Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 205 of 328
Found at i:61667861 original size:57 final size:56
Alignment explanation
Indices: 61667717--61667862 Score: 163
Period size: 58 Copynumber: 2.5 Consensus size: 56
61667707 TGGAAGGTAT
*
61667717 GGCACTAAGTGTGCGAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATTATA
1 GGCACTAAGTGTGCGAACTTAAA-TGTATGGCACTAAGTGTGCGAACTTAAATTATA
* *
61667774 TGGCACTATGTGTGCGAACTTAAATCGTATGGCACTAAGTGTGCGAGATCGTT-TATTA-A
1 -GGCACTAAGTGTGCGAACTTAAAT-GTATGGCACTAAGTGTGCGA-A-C-TTAAATTATA
* *
61667833 -GCACTACGTGTGCGAATTTAATATGTATGG
1 GGCACTAAGTGTGCGAACTTAA-ATGTATGG
61667863 TCTATCGATT
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
57 26 0.33
58 43 0.55
59 2 0.03
60 5 0.06
61 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (56 bp):
GGCACTAAGTGTGCGAACTTAAATGTATGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:61670418 original size:29 final size:29
Alignment explanation
Indices: 61670383--61670515 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
61670373 ATAAACGATC
*** *
61670383 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
61670412 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
61670441 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
61670470 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
61670499 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
61670516 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:61678237 original size:29 final size:29
Alignment explanation
Indices: 61678202--61678363 Score: 261
Period size: 29 Copynumber: 5.6 Consensus size: 29
61678192 ATAAACGATC
*** *
61678202 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
61678231 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
61678260 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
61678289 TCACACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
61678318 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
61678347 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
61678364 ATCTTGTCAC
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:61683731 original size:35 final size:35
Alignment explanation
Indices: 61683685--61683832 Score: 134
Period size: 40 Copynumber: 3.9 Consensus size: 35
61683675 ATATCACGAT
61683685 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATAAA
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATAAA
*
61683720 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCA
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-A---A
* * * *
61683759 CTAGCACAATTGCCTTCGGGTCTTAACCCGGTTATAAT
1 -TTGCACAAATGCCTTCGGGTCTTAGCCCGG--ATAAA
* * *
61683797 TTCCAGCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 TTGCA-CA-AA-TGCCTTCGGGTCTTAGCCCGGATA
61683833 TCATTCAATT
Statistics
Matches: 91, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
35 32 0.35
36 1 0.01
37 3 0.03
38 5 0.05
39 2 0.02
40 44 0.48
41 1 0.01
42 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.28
Consensus pattern (35 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATAAA
Found at i:61683789 original size:40 final size:36
Alignment explanation
Indices: 61683655--61683794 Score: 131
Period size: 40 Copynumber: 3.7 Consensus size: 36
61683645 CCGCACCAAG
* *
61683655 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-AC-A-TTGCAC-AAT
*
61683695 GCCTTCGGGTCTTAGCCCGGATA-A-ATTGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATATACATTGCAC-AAT
* *
61683730 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATT
1 GCCTTCGGGTCTTAACCCGGATATA--CA-TTGCACAA-T
*
61683770 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
61683795 ATTTCCAGCA
Statistics
Matches: 87, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
35 32 0.37
36 2 0.02
38 1 0.01
39 3 0.03
40 49 0.56
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (36 bp):
GCCTTCGGGTCTTAACCCGGATATACATTGCACAAT
Found at i:61687131 original size:40 final size:40
Alignment explanation
Indices: 61687065--61687215 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
61687055 AAATTGAATG
* * *
61687065 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
61687104 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
61687144 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
61687184 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
61687216 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:61687229 original size:40 final size:40
Alignment explanation
Indices: 61687102--61687231 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
61687092 ATGCTGGAAA
* * *
61687102 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
61687142 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
61687182 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
61687222 TTATATCCGG
1 TTATATCCGG
61687232 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:61695150 original size:40 final size:40
Alignment explanation
Indices: 61695065--61695215 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
61695055 AATTGAATGA
* * * *
61695065 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
61695105 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
61695146 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
61695185 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
61695216 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:61695229 original size:40 final size:40
Alignment explanation
Indices: 61695102--61695231 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
61695092 ATGCTGGAAA
* * *
61695102 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
61695142 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
61695182 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
61695222 TTATATCCGG
1 TTATATCCGG
61695232 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:61695230 original size:80 final size:80
Alignment explanation
Indices: 61695064--61695231 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
61695054 AAATTGAATG
* *
61695064 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
61695129 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
61695144 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
61695207 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
61695224 ATATCCGG
1 ATATCCGG
61695232 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:61701276 original size:50 final size:50
Alignment explanation
Indices: 61701146--61701276 Score: 201
Period size: 50 Copynumber: 2.6 Consensus size: 50
61701136 ATATGTGTCA
* *
61701146 GTGTAAGACCAT-TTTGGGACATGGCATCGACACAGATATGCTAGAGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGCTAGAGCCT
* * *
61701195 ATGTAAAACCATGTCTGGGACATGGCATCGGCATAGATATGCTAGAGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGCTAGAGCCT
*
61701245 GTGTAAGACCATGTCTGGGACATGGCTTCGGC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC
61701277 TCCTTACCCC
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 10 0.14
50 63 0.86
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGCTAGAGCCT
Found at i:61706235 original size:28 final size:28
Alignment explanation
Indices: 61706203--61706301 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
61706193 GCCATAAGCC
*
61706203 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
61706231 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
61706259 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
61706288 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61706302 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:61715446 original size:14 final size:16
Alignment explanation
Indices: 61715427--61715459 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
61715417 ATTATGTGAT
61715427 AATGAATGT-A-ATTG
1 AATGAATGTGAGATTG
61715441 AATGAATGTGAGATTG
1 AATGAATGTGAGATTG
61715457 AAT
1 AAT
61715460 AAGTGAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.24, T:0.33
Consensus pattern (16 bp):
AATGAATGTGAGATTG
Found at i:61719336 original size:40 final size:40
Alignment explanation
Indices: 61719281--61719465 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
61719271 CTCACACAAG
* * * *
61719281 GCCTTCGGGTCTTAGCCTGGGTAT-GATCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAG-TCACTAGCACAAAT
*
61719321 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
** * * * *
61719361 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
61719401 GCCTTC-GGATCTTAGTCCGGATATAGTCACTTAACACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
61719442 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
61719466 CATTCGAATA
Statistics
Matches: 119, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.74
41 26 0.22
42 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:61724196 original size:48 final size:48
Alignment explanation
Indices: 61724118--61724218 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
61724108 CACAAGATAG
*
61724118 GATGCCAATGCCATATCCCAGATATCGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATCGTCTTACATGGGATCACATATC
* *
61724166 GATGCCAATGCCATGTCCCAGACATTGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATCGTCTTACATGGGATCACATATC
*
61724214 AATGC
1 GATGC
61724219 TGATAGCCCA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATCGTCTTACATGGGATCACATATC
Found at i:61726455 original size:22 final size:21
Alignment explanation
Indices: 61726430--61726494 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
61726420 GCAAATACGT
61726430 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
61726452 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
61726474 TTAGCACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
61726495 AATAATTGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:61726759 original size:41 final size:41
Alignment explanation
Indices: 61726637--61726759 Score: 165
Period size: 41 Copynumber: 3.0 Consensus size: 41
61726627 AAAAGCCACC
* * *
61726637 GGTGGATCCACGGTCGTCAAGTAACCATGCGATCCTTAATC
1 GGTGGATCCACGATCGTCAAGTAACCATGCGATCCTCAATT
* * * *
61726678 GATGGATCCACGTTCGTCAAGAAACCATGCGATCTTCAATT
1 GGTGGATCCACGATCGTCAAGTAACCATGCGATCCTCAATT
* *
61726719 GGTGGATCCACGATCGTGAAGTAACCAGGCGATCCTCAATT
1 GGTGGATCCACGATCGTCAAGTAACCATGCGATCCTCAATT
61726760 TCTTCCTCCG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (41 bp):
GGTGGATCCACGATCGTCAAGTAACCATGCGATCCTCAATT
Found at i:61726973 original size:27 final size:27
Alignment explanation
Indices: 61726943--61726999 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
61726933 GGGGCAGAAC
* *
61726943 AGTCTTTTTA-CCTATCAGGGGTATTTT
1 AGTCATTTTACCCTA-CAAGGGTATTTT
*
61726970 AGTCATTTTACCCTACAAGGGTGTTTT
1 AGTCATTTTACCCTACAAGGGTATTTT
61726997 AGT
1 AGT
61727000 AAATCTACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (27 bp):
AGTCATTTTACCCTACAAGGGTATTTT
Found at i:61727041 original size:27 final size:27
Alignment explanation
Indices: 61726985--61727380 Score: 225
Period size: 27 Copynumber: 14.7 Consensus size: 27
61726975 TTTTACCCTA
* * * * *
61726985 CAAGGGTGTTTTAGTAAATCTACAAAC
1 CAAGGGTATTTCAGTAATTTTACAAAT
* **
61727012 CAAGGGTATTTCAGTAATTTTGCAAGC
1 CAAGGGTATTTCAGTAATTTTACAAAT
* **
61727039 CAATGGTATTTCTA-TAATTTTTGAAAGT
1 CAAGGGTATTTC-AGTAATTTTACAAA-T
** *
61727067 CAAGGGTATTTTTGTAATTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
*
61727094 CAAGGGTATTTCTA-TAATTTTCCAAAT
1 CAAGGGTATTTC-AGTAATTTTACAAAT
* * *
61727121 TAAGGGTATTTCGGTAATTTTCCAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
**
61727148 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
* * * *
61727175 CGAGGGTATTT-TGATAATTTTAGAAGT
1 CAAGGGTATTTCAG-TAATTTTACAAAT
*
61727202 CAAGGGTATTTC-GATAATTTTACAACT
1 CAAGGGTATTTCAG-TAATTTTACAAAT
** * *
61727229 TGAGGGTATTTCAGTAATTTCATAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAT
* * **
61727256 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTCAGTAATTTTACAAAT
* * **
61727282 CTAGGGGTGTTTTGGTAATTTT-CAAA-
1 C-AAGGGTATTTCAGTAATTTTACAAAT
* * ** * *
61727308 CGAGGGGCATTTTGGTAATTTTGCTAAT
1 C-AAGGGTATTTCAGTAATTTTACAAAT
* * ** *
61727336 CGAGGGTATTT-TGATAATTTTGTAAAC
1 CAAGGGTATTTCAG-TAATTTTACAAAT
61727363 CAAGGGTA-TTCAGTAATT
1 CAAGGGTATTTCAGTAATT
61727381 CTATCCTACA
Statistics
Matches: 298, Mismatches: 58, Indels: 27
0.78 0.15 0.07
Matches are distributed among these distances:
26 32 0.11
27 243 0.82
28 23 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTACAAAT
Found at i:61727183 original size:81 final size:80
Alignment explanation
Indices: 61726985--61727372 Score: 305
Period size: 81 Copynumber: 4.8 Consensus size: 80
61726975 TTTTACCCTA
* * * * * * * *
61726985 CAAGGGTGTTTTAGTAAATCTACAAACCAAGGGTA-TTTCAGTAATTTTGCAAGCCAATGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGA-TAATTTTACAAACCAAGGGTATT
* *
61727049 TCTATAATTTTTGAAAGT
65 TCGATAA-TTTTCAAA-T
* * * **
61727067 CAAGGGTATTTTTGTAATTTTATAAATCAAGGGTATTTCT-ATAATTTTCCAAATTAAGGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTT-TGATAATTTTACAAACCAAGGGTATT
*
61727131 TCGGTAATTTTCCAAAT
65 TCGATAATTTT-CAAAT
* * * **
61727148 CAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGATAATTTTAGAAGTCAAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
*
61727213 CGATAATTTTACAACT
66 CGATAATTTT-CAAAT
** * * * * * * * * *
61727229 TGAGGGTATTTCAGTAATTTCATAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTGTTT
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
* *
61727294 TGGTAATTTTCAAA-
66 CGATAATTTTCAAAT
* * * * * * **
61727308 CGAGGGGCATTTTGGTAATTTTGCTAATCGAGGGTATTTTGATAATTTTGTAAACCAAGGGTATT
1 C-AAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATT
61727373 CAGTAATTCT
Statistics
Matches: 239, Mismatches: 62, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
80 49 0.21
81 131 0.55
82 55 0.23
83 3 0.01
84 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAACCAAGGGTATTT
CGATAATTTTCAAAT
Found at i:61727395 original size:26 final size:27
Alignment explanation
Indices: 61727366--61727417 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
61727356 TGTAAACCAA
* *
61727366 GGGTA-TTCAGTAATTCTATCCTACAG
1 GGGTATTTCAGTAATACTAGCCTACAG
*
61727392 GGGTATTTTAGTAATACTAGCCTACA
1 GGGTATTTCAGTAATACTAGCCTACA
61727418 AATATGAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (27 bp):
GGGTATTTCAGTAATACTAGCCTACAG
Found at i:61728720 original size:43 final size:42
Alignment explanation
Indices: 61728640--61728795 Score: 156
Period size: 42 Copynumber: 3.7 Consensus size: 42
61728630 AGTATTACAC
* * *
61728640 CAATGCCATATCCCAGATATGGTCTTACA-TAGGATCTCGTAT
1 CAATGCCATATCCCAGATATGGTCTTACACGA-AATCTCATAT
* * *
61728682 CGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATAT
** *
61728725 CAAAACCATATCCCAGATATGGTCTTACACGAAGTCTCATCAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-AT
* * *
61728768 -GATGTCATATCCCATATAT-GTCTTACAC
1 CAATGCCATATCCCAGATATGGTCTTACAC
61728796 CTAAACTTAA
Statistics
Matches: 94, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
41 9 0.10
42 50 0.53
43 34 0.36
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
Found at i:61732296 original size:80 final size:80
Alignment explanation
Indices: 61732164--61732375 Score: 295
Period size: 80 Copynumber: 2.7 Consensus size: 80
61732154 ACCCAAGTAT
* * * *
61732164 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGACTTAGCCCAGATATAGT
61732228 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* * *
61732243 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCAGGACTTAGCCCGGGTATAG
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCAGGACTTAGCCCAGATATAG
61732307 TCACTAGCATAAATGC
65 TCACTAGCATAAATGC
* * *
61732323 CTTCGGGACTTAGCCTGGATATAGCAACTCGCACAAATTCCTTC-GGATCTTAG
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGA-CTTAG
61732376 TCCGGTTATC
Statistics
Matches: 118, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 16 0.14
80 101 0.86
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGACTTAGCCCAGATATAGT
CACTAGCATAAATGC
Found at i:61732375 original size:40 final size:40
Alignment explanation
Indices: 61732164--61732368 Score: 263
Period size: 40 Copynumber: 5.2 Consensus size: 40
61732154 ACCCAAGTAT
* *
61732164 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
61732203 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
61732243 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
61732283 CTTCAGGACTTAGCCCGGGTATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
61732323 CTTCGGGACTTAGCCTGGATATAG-CAACTCGCACAAATTC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
61732363 CTTCGG
1 CTTCGG
61732369 ATCTTAGTCC
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 12 0.08
40 131 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:61736595 original size:93 final size:93
Alignment explanation
Indices: 61736483--61736652 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
61736473 GCCCAAAAGT
* *
61736483 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61736547 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
61736576 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
61736641 CGAGTTCGGATG
66 CGAGCTCGGATG
61736653 ATCAACCATC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:61736645 original size:46 final size:46
Alignment explanation
Indices: 61736479--61736650 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
61736469 ACCCGCCCAA
* * *
61736479 AAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCAT
* * *
61736525 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CAT
*
61736575 ---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
61736618 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61736651 TGATCAACCA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
45 1 0.01
46 58 0.55
47 28 0.27
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
Found at i:61743101 original size:40 final size:39
Alignment explanation
Indices: 61743038--61743244 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
61743028 AAGAATTTAA
* *
61743038 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
* *
61743078 CCGGTTATAGTATCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
* * *
61743118 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
* *
61743157 CCGGAT-TAGTAACTCGCACAAAAGCCTTC-GGATCTTAGT
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
61743196 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGC
61743237 CCGGATAT
1 CCGGATAT
61743245 CATTCGAATA
Statistics
Matches: 144, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
37 2 0.01
38 21 0.15
39 23 0.16
40 66 0.46
41 29 0.20
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:61746682 original size:48 final size:43
Alignment explanation
Indices: 61746581--61746710 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 43
61746571 GGGCTATTGT
* * *
61746581 GAGCTAGTGTGAGACATGTCTGGGACATGCATCAGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--GCATTATAA
61746627 GAGCTAGTGTAAGACTATGTCTGGGACATGGCATCGGCATTGAGATAA
1 GAGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATT---ATAA
*
61746675 GAGCTAGTGTAAGACGTGTCTGGGACATGCATCGGC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
61746711 GTCGTAAGGT
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
45 4 0.05
46 22 0.29
47 26 0.35
48 23 0.31
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.24
Consensus pattern (43 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTATAA
Found at i:61749535 original size:79 final size:79
Alignment explanation
Indices: 61749452--61749598 Score: 172
Period size: 79 Copynumber: 1.9 Consensus size: 79
61749442 TATGGTAACC
* * * *
61749452 CGCACCAAGGCCTACGGGAC-TAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGAT-T-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
61749515 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
61749531 CGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATTAGCCACTAGCACAAATGCCTTCGGGTCTTAACC
61749596 CGG
66 CGG
61749599 TTATATTTCC
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
78 1 0.02
79 46 0.82
80 9 0.16
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATTAGCCACTAGCACAAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:61749598 original size:39 final size:38
Alignment explanation
Indices: 61749492--61749598 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 38
61749482 ATCACGATTT
** *
61749492 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAG-ACCACTA
61749532 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA-TAGACCACTA
*
61749571 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
61749599 TTATATTTCC
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.03
39 27 0.45
40 28 0.47
41 3 0.05
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGACCACTA
Found at i:61754319 original size:40 final size:38
Alignment explanation
Indices: 61754270--61754377 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
61754260 ATCACGATTT
*
61754270 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
61754310 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
61754350 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
61754378 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:61754337 original size:80 final size:80
Alignment explanation
Indices: 61754229--61754377 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
61754219 TATGGTAACC
* * * *
61754229 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
61754293 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
61754309 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
61754374 CCGG
66 CCGG
61754378 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:61762387 original size:40 final size:38
Alignment explanation
Indices: 61762338--61762445 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
61762328 ATCACGATTT
*
61762338 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
61762378 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
61762418 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
61762446 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:61770714 original size:65 final size:65
Alignment explanation
Indices: 61770610--61770741 Score: 228
Period size: 65 Copynumber: 2.0 Consensus size: 65
61770600 TGAGCCAGAG
* * *
61770610 TAAGACCATGTCTAGGACATGTCATCGGCAACATACCTTATGTTTGAGGTTTAGTGAATATTTGA
1 TAAGACCATGTCTAGGACATGGCATCGACAACATACCTTATGTTTGAGGTTTAATGAATATTTGA
*
61770675 TAAGACCATGTCTAGGACATGGCATCGACATCATACCTTATGTTTGAGGTTTAATGAATATTTGA
1 TAAGACCATGTCTAGGACATGGCATCGACAACATACCTTATGTTTGAGGTTTAATGAATATTTGA
61770740 TA
1 TA
61770742 GTATTCCAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.34
Consensus pattern (65 bp):
TAAGACCATGTCTAGGACATGGCATCGACAACATACCTTATGTTTGAGGTTTAATGAATATTTGA
Found at i:61772874 original size:40 final size:39
Alignment explanation
Indices: 61772829--61772957 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
61772819 CGGAATACAA
61772829 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * *
61772869 CCGGATAGAACGACTTGCACGAATGCCTTCGAGT-TTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
61772908 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
61772948 CCGGATATAA
1 CCGGATATAA
61772958 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
38 3 0.04
39 28 0.38
40 42 0.58
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:61780613 original size:46 final size:46
Alignment explanation
Indices: 61780560--61780735 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
61780550 TATTTGGGCA
* *
61780560 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
61780606 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
61780653 TGCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
61780699 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61780736 TCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 60 0.56
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:61782970 original size:40 final size:40
Alignment explanation
Indices: 61782926--61783054 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
61782916 TGCTGGAAAT
* *
61782926 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
61782966 TATATCCGGGCTT-AGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGG-TTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * * *
61783006 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGA-GTGAC
61783046 TATATCCGG
1 TATATCCGG
61783055 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
39 5 0.07
40 66 0.88
41 4 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:61788054 original size:29 final size:29
Alignment explanation
Indices: 61788021--61788152 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
61788011 CCTCCGAACT
** * * *
61788021 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
61788050 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
61788079 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
61788108 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
61788137 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
61788153 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:61790145 original size:15 final size:15
Alignment explanation
Indices: 61790125--61790180 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
61790115 GTATCTTGGG
61790125 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
61790140 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
61790155 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
61790170 TTTCTTTATTC
1 TTTCTTTATTC
61790181 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:61792628 original size:46 final size:46
Alignment explanation
Indices: 61792575--61792750 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
61792565 TATTTGGGCA
*
61792575 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
61792621 TCCGAACTCGTTCAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
61792668 TGCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
61792714 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61792751 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 26 0.25
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:61792709 original size:93 final size:93
Alignment explanation
Indices: 61792571--61792743 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
61792561 AGGATATTTG
* ***
61792571 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTCAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTCAG
61792636 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
61792664 GGCATGCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTCAG
*
61792729 TTGAGTCCGAGTTCG
66 TTGAGTCCAAGTTCG
61792744 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTCAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:61795426 original size:40 final size:40
Alignment explanation
Indices: 61795378--61795553 Score: 257
Period size: 40 Copynumber: 4.4 Consensus size: 40
61795368 GGACTAAGAT
61795378 CCGAAGGCATTTGTG-TGAGTTG-CTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCT-AG-TGACTATATCCGGGCTAAGTC
* * *
61795418 CTGAAGGCATTTATGCTAGTGACTATACCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
61795458 CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
61795498 CCGAAGGCATTTATGCTAGTGACTATATCCGGACTAAGAC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
61795538 CCGAAGGCATTTGTGC
1 CCGAAGGCATTTGTGC
61795554 GAGTTGCGAT
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.02
40 119 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:61795504 original size:80 final size:81
Alignment explanation
Indices: 61795366--61795582 Score: 300
Period size: 80 Copynumber: 2.7 Consensus size: 81
61795356 CGGATGATAA
* * *
61795366 CCGGACTAAGATCCGAAGGCATTTGTG-TGAGTTGCTATATCCGGGCTAAGTCCTGAAGGCATTT
1 CCGGACTAAGACCCGAAGGCATTTGTGCTGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTT
61795430 ATGCTAGTGACTATAC
66 ATGCTAGTGACTATAC
* *
61795446 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-CGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGACTAAGACCCGAAGGCATTTGTGCTGAGTCG-CTATATCCGGGCTAAGTCCCGAAGGCATT
*
61795509 TATGCTAGTGACTATAT
65 TATGCTAGTGACTATAC
* * * *
61795526 CCGGACTAAGACCCGAAGGCATTTGTGC-GAGTTGCGATAGCC-GGCTAAATCCCGAAG
1 CCGGACTAAGACCCGAAGGCATTTGTGCTGAGTCGCTATATCCGGGCTAAGTCCCGAAG
61795583 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
79 15 0.12
80 104 0.86
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGACTAAGACCCGAAGGCATTTGTGCTGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTT
ATGCTAGTGACTATAC
Found at i:61800416 original size:29 final size:28
Alignment explanation
Indices: 61800382--61800484 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
61800372 TACTCAATCA
*
61800382 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
61800411 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
61800440 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
61800469 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61800485 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:61808419 original size:29 final size:28
Alignment explanation
Indices: 61808385--61808487 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
61808375 TACTCAATCA
*
61808385 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
61808414 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
61808443 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
61808472 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61808488 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:61814365 original size:48 final size:47
Alignment explanation
Indices: 61814300--61814499 Score: 159
Period size: 47 Copynumber: 4.4 Consensus size: 47
61814290 ATACGTGTAA
*
61814300 GTGGTGCTAAGTGGATATACAATGATTACACATATTGATACATGTAAAT
1 GTGGTGCTAAGTGGATATACAACGATTACACATATTGATACAT-T-AAT
* *** *
61814349 -TGGTGCTAAGTGGATATACGACGATTACTTTTATTGATTCATTAAT
1 GTGGTGCTAAGTGGATATACAACGATTACACATATTGATACATTAAT
* * * *
61814395 GTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------TAAC
1 GTGGTGCTAAGTGGATATACAACGATTACACATATTGATACATTAAT
* * * * * *
61814433 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACAACGATTACACATATTGATACATTAAT
*
61814480 ATGGTGCTAAGTGGATATAC
1 GTGGTGCTAAGTGGATATAC
61814500 CACGGTTAAA
Statistics
Matches: 125, Mismatches: 16, Indels: 22
0.77 0.10 0.13
Matches are distributed among these distances:
38 30 0.24
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 1 0.01
46 3 0.02
47 48 0.38
48 36 0.29
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.34
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACAACGATTACACATATTGATACATTAAT
Found at i:61814446 original size:38 final size:38
Alignment explanation
Indices: 61814395--61814552 Score: 190
Period size: 38 Copynumber: 3.9 Consensus size: 38
61814385 ATTCATTAAT
61814395 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
* *
61814433 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------TAAC
*
61814480 ATGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
* *
61814518 GTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGT
61814553 TAATTTGAAA
Statistics
Matches: 103, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
38 63 0.61
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 30 0.29
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
Found at i:61814542 original size:85 final size:85
Alignment explanation
Indices: 61814339--61814545 Score: 333
Period size: 85 Copynumber: 2.4 Consensus size: 85
61814329 ACATATTGAT
** * * * * * **
61814339 ACATGTAAATTGGTGCTAAGTGGATATACGACGATTACTTTTATTGATTCATTAATGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
61814404 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
61814424 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
61814489 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
61814509 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
61814546 TACATGTTAA
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:61818744 original size:29 final size:28
Alignment explanation
Indices: 61818707--61818809 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
61818697 GTGACGAGAT
* *
61818707 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
61818736 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
61818765 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
61818794 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61818810 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:61824324 original size:33 final size:33
Alignment explanation
Indices: 61824281--61824344 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
61824271 GCATGTAGTA
* *
61824281 ACAGTCTGGGCCTGAGCTCTATTCAGTAACAGT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
* *
61824314 ACAGTTTGGGCCTTAGCCCTATACAGTAACA
1 ACAGTCTGGGCCTGAGCCCTATACAGTAACA
61824345 ATGTGGGCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (33 bp):
ACAGTCTGGGCCTGAGCCCTATACAGTAACAGT
Found at i:61824580 original size:27 final size:26
Alignment explanation
Indices: 61824531--61824589 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
61824521 GCTGCCAGAA
*
61824531 ACAGTAAATGTGGCAAAGCCACCAGT
1 ACAGTAAATGTGACAAAGCCACCAGT
* * *
61824557 ATCAGTAATTGTGACATAGTCACCAGT
1 A-CAGTAAATGTGACAAAGCCACCAGT
61824584 ACAGTA
1 ACAGTA
61824590 CTTCCCCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
ACAGTAAATGTGACAAAGCCACCAGT
Found at i:61824771 original size:54 final size:54
Alignment explanation
Indices: 61824713--61824819 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
61824703 TACGAAACAT
*
61824713 AAGGGCATAA-TCATCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTAC
1 AAGGGCATAACT-ATCATTTTACCATACAGGAGTATTACGGTCATTTTACCCTAC
* * * *
61824767 AAGGGTATTACTGTCATTTTACCCTACAGGAGTATTACGGTCATTTTACCCTA
1 AAGGGCATAACTATCATTTTACCATACAGGAGTATTACGGTCATTTTACCCTA
61824820 TAGGGGTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 46 0.98
55 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (54 bp):
AAGGGCATAACTATCATTTTACCATACAGGAGTATTACGGTCATTTTACCCTAC
Found at i:61824827 original size:54 final size:54
Alignment explanation
Indices: 61824726--61824843 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
61824716 GGCATAATCA
*
61824726 TCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTACAAGGGTATTACT-G
1 TCATTTTACCATACAGGAGTATTACGGTCATTTTACCCTACAAGGGTATTA-TAG
* * *
61824780 TCATTTTACCCTACAGGAGTATTACGGTCATTTTACCCTATAGGGGTATTATAG
1 TCATTTTACCATACAGGAGTATTACGGTCATTTTACCCTACAAGGGTATTATAG
*
61824834 TTATTTTACC
1 TCATTTTACC
61824844 TATTTTAGGG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.02
54 57 0.98
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (54 bp):
TCATTTTACCATACAGGAGTATTACGGTCATTTTACCCTACAAGGGTATTATAG
Found at i:61824843 original size:27 final size:27
Alignment explanation
Indices: 61824726--61824830 Score: 165
Period size: 27 Copynumber: 3.9 Consensus size: 27
61824716 GGCATAATCA
*
61824726 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
61824753 TCATTTTACCCTACAAGGGTATTACTG
1 TCATTTTACCCTACAGGGGTATTACGG
*
61824780 TCATTTTACCCTACAGGAGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
*
61824807 TCATTTTACCCTATAGGGGTATTA
1 TCATTTTACCCTACAGGGGTATTA
61824831 TAGTTATTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:61827523 original size:17 final size:16
Alignment explanation
Indices: 61827476--61827523 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
61827466 CAGAGTCTCA
*
61827476 CTACAGTTTTCAGTCTT
1 CTACAG-TTTCAGTTTT
* *
61827493 CTATAGTCTCAGTTTT
1 CTACAGTTTCAGTTTT
61827509 CCTACAGTTTCAGTT
1 -CTACAGTTTCAGTT
61827524 AACTCAGACT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.46
Consensus pattern (16 bp):
CTACAGTTTCAGTTTT
Found at i:61828807 original size:27 final size:27
Alignment explanation
Indices: 61828777--61828944 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
61828767 TAATCATCAA
* *
61828777 TTTACCATACATGGGTATTACGGTCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
* * * *
61828804 TTTACCATAC-AGGGCTATTATGCTTAT
1 TTTACCCTACAAGGG-TATTACGGTCAT
* *
61828831 TTTACCCTACAGGGGCATTACGGTCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
* *
61828858 TTTACCCTACAGGGGTATTACGCTCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
* *
61828885 TTTACCCTATAAGGGCATTACGGTCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
* * *
61828912 TTTATCCTACAAAGGTATTACGGTTAT
1 TTTACCCTACAAGGGTATTACGGTCAT
61828939 TTTACC
1 TTTACC
61828945 TATTTTGGGG
Statistics
Matches: 117, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.03
27 111 0.95
28 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAAGGGTATTACGGTCAT
Found at i:61828914 original size:81 final size:81
Alignment explanation
Indices: 61828777--61828944 Score: 205
Period size: 81 Copynumber: 2.1 Consensus size: 81
61828767 TAATCATCAA
* * * *
61828777 TTTACCATACATGGGTATTACGGTCATTTTACCATACAGGGCTATTATGCTTATTTTACCCTACA
1 TTTACCATACAGGGGTATTACGCTCATTTTACCATACAGGGCTATTACGCTCATTTTACCCTACA
**
61828842 GGGGCATTACGGTCAT
66 AAGGCATTACGGTCAT
* * *
61828858 TTTACCCTACAGGGGTATTACGCTCATTTTACCCTATA-AGGGC-ATTACGGTCATTTTATCCTA
1 TTTACCATACAGGGGTATTACGCTCATTTTA-CC-ATACAGGGCTATTACGCTCATTTTACCCTA
* *
61828921 CAAAGGTATTACGGTTAT
64 CAAAGGCATTACGGTCAT
61828939 TTTACC
1 TTTACC
61828945 TATTTTGGGG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
81 64 0.86
82 7 0.09
83 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (81 bp):
TTTACCATACAGGGGTATTACGCTCATTTTACCATACAGGGCTATTACGCTCATTTTACCCTACA
AAGGCATTACGGTCAT
Found at i:61828921 original size:54 final size:53
Alignment explanation
Indices: 61828777--61828944 Score: 210
Period size: 54 Copynumber: 3.1 Consensus size: 53
61828767 TAATCATCAA
* * * * *
61828777 TTTACCATACATGGGTATTACGGTCATTTTACCATACAGGGCTATTATGCTTAT
1 TTTACCCTACAAGGGCATTACGGTCATTTTACC-TACAGGGGTATTACGCTTAT
* *
61828831 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTACAGGGGTATTACGCTCAT
1 TTTACCCTACAAGGGCATTACGGTCATTTTA-CCTACAGGGGTATTACGCTTAT
* ** *
61828885 TTTACCCTATAAGGGCATTACGGTCATTTTATCCTACAAAGGTATTACGGTTAT
1 TTTACCCTACAAGGGCATTACGGTCATTTTA-CCTACAGGGGTATTACGCTTAT
61828939 TTTACC
1 TTTACC
61828945 TATTTTGGGG
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 98 0.98
55 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.36
Consensus pattern (53 bp):
TTTACCCTACAAGGGCATTACGGTCATTTTACCTACAGGGGTATTACGCTTAT
Found at i:61836457 original size:40 final size:40
Alignment explanation
Indices: 61836412--61836558 Score: 240
Period size: 40 Copynumber: 3.7 Consensus size: 40
61836402 CAAGCACCAT
* * * *
61836412 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGTACGAA
* *
61836452 TGCCTTCGGGTCCTAGCCCGGATATAACAACTCGTACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGTACGAA
61836492 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGTACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGTACGAA
61836532 TGCCTTCGGGTCTTAGCCCGGATATAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA
61836559 TCACTAGCAT
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGTACGAA
Found at i:61836578 original size:80 final size:79
Alignment explanation
Indices: 61836389--61836592 Score: 264
Period size: 80 Copynumber: 2.5 Consensus size: 79
61836379 TGGAATTTAA
* * * * *
61836389 CCGGATATAACCACAAGCACCATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATG
1 CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
61836454 CCTTCGGGTCCTAGC
65 CCTTCGGGTCCTAGC
* * * *
61836469 CCGGATATAACAACTCGTACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGTACGAATG
1 CCGGATATAAC-ACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
*
61836534 CCTTCGGGTCTTAGC
65 CCTTCGGGTCCTAGC
* * *
61836549 CCGGATATAATCACTAGCATAATTTCCTTCGGGACTTAGCCCGG
1 CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCCGG
61836593 GTATCATTCA
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 104 0.98
81 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
CCGGATATAACACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGC
CTTCGGGTCCTAGC
Found at i:61837331 original size:2 final size:2
Alignment explanation
Indices: 61837324--61837349 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
61837314 ATGTGCAAAC
61837324 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
61837350 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61844562 original size:40 final size:40
Alignment explanation
Indices: 61844492--61844695 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
61844482 CGGAATTTAA
* ** * * *
61844492 CCGGATATAACCACAAGCACCATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* *
61844532 CCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
61844572 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
61844612 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * *
61844652 CCGGATATAATC-ACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACGAA-TGCCTTCGGGTCTTAGC
61844692 CCGG
1 CCGG
61844696 GTATCATTCA
Statistics
Matches: 146, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 143 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:61844626 original size:80 final size:79
Alignment explanation
Indices: 61844492--61844695 Score: 291
Period size: 80 Copynumber: 2.5 Consensus size: 79
61844482 CGGAATTTAA
* * * * *
61844492 CCGGATATAACCACAAGCACCATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATG
1 CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
61844557 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* * *
61844572 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACGAATG
1 CCGGATATAAC-ACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATG
61844637 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
* *
61844652 CCGGATATAATCACTAGCATAATTGCCTTCGGGACTTAGCCCGG
1 CCGGATATAA-CACTAGCACAATTGCCTTCGGGTCTTAGCCCGG
61844696 GTATCATTCA
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 108 0.98
81 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
CCGGATATAACACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGC
CTTCGGGTCTTAGC
Found at i:61847624 original size:28 final size:28
Alignment explanation
Indices: 61847555--61847655 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
61847545 TGACAAGATT
* * * *
61847555 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
61847585 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
61847613 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
61847642 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
61847656 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:61855559 original size:28 final size:28
Alignment explanation
Indices: 61855490--61855590 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
61855480 TGACAAGATT
* * * *
61855490 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
61855520 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
61855548 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
61855577 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
61855591 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:61877920 original size:40 final size:41
Alignment explanation
Indices: 61877860--61878083 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 41
61877850 ACCCAAGTAT
* * *
61877860 CTTCGGGATTTAG-TCGGATATA-TCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
* **
61877899 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
61877939 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
* *
61877979 CTTCGGGACTTAGCCTGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTA---GCACAAATGC
* *
61878022 CTTCAGGACTTAGCCCGGATATAGT-AACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
61878062 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
61878084 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 113 0.70
41 2 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
Found at i:61878046 original size:83 final size:80
Alignment explanation
Indices: 61877874--61878083 Score: 280
Period size: 83 Copynumber: 2.6 Consensus size: 80
61877864 GGGATTTAGT
* * **
61877874 CGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATG
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
61877938 CCTTCGGGACTTAGCC
65 CCTTCAGGACTTAGCC
* *
61877954 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCTGGGTATAG-CAACTACTCGCACAA
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAA
61878018 ATGCCTTCAGGACTTAGCC
62 ATGCCTTCAGGACTTAGCC
* *
61878037 CGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
61878084 CATCCGAATA
Statistics
Matches: 114, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
79 1 0.01
80 46 0.40
81 2 0.02
83 65 0.57
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
CTTCAGGACTTAGCC
Found at i:61881919 original size:66 final size:68
Alignment explanation
Indices: 61881841--61882027 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61881831 TAGTACCACT
*
61881841 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61881903 CACG
65 CACG
61881907 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61881972 ATCACG
63 ATCACG
61881978 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61882028 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61881952 original size:71 final size:71
Alignment explanation
Indices: 61881864--61882027 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61881854 CGATTTGTCT
61881864 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61881929 CTTTCA
66 CTTTCA
61881935 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61882000 CTTTCA
66 CTTTCA
61882006 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61882028 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61882065 original size:71 final size:70
Alignment explanation
Indices: 61881864--61882061 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
61881854 CGATTTGTCT
* * * *
61881864 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61881929 CTTTCA
65 CTTTCA
* * * *
61881935 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61882000 CTTTCA
65 CTTTCA
* *
61882006 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
61882062 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61889455 original size:66 final size:68
Alignment explanation
Indices: 61889377--61889563 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
61889367 TAGTACCACT
*
61889377 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
61889439 CACG
65 CACG
61889443 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
61889508 ATCACG
63 ATCACG
61889514 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
61889564 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:61889488 original size:71 final size:71
Alignment explanation
Indices: 61889400--61889563 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
61889390 CGATTTGTCT
61889400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61889465 CTTTCA
66 CTTTCA
61889471 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
61889536 CTTTCA
66 CTTTCA
61889542 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
61889564 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:61889601 original size:71 final size:70
Alignment explanation
Indices: 61889400--61889597 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
61889390 CGATTTGTCT
* * * *
61889400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61889465 CTTTCA
65 CTTTCA
* * * *
61889471 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
61889536 CTTTCA
65 CTTTCA
* *
61889542 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
61889598 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:61895009 original size:40 final size:40
Alignment explanation
Indices: 61894901--61895010 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
61894891 ATTGAATGAT
* * * * *
61894901 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
61894941 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
61894981 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
61895011 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:61895025 original size:40 final size:39
Alignment explanation
Indices: 61894901--61895050 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
61894891 ATTGAATGAT
* * * * * * *
61894901 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
61894941 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
61894981 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
61895021 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
61895051 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:61903031 original size:40 final size:39
Alignment explanation
Indices: 61902945--61903056 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 39
61902935 GCTGGTAATT
*
61902945 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGAC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
* *
61902984 TACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-
1 -ACATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGAC
* *
61903026 A-ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGC
61903057 GGGTTACCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
40 57 0.90
41 1 0.02
43 5 0.08
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
Found at i:61905443 original size:11 final size:11
Alignment explanation
Indices: 61905429--61905477 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
61905419 TAAGTTTCAA
*
61905429 AAAAAAATTTG
1 AAAAAAATTCG
*
61905440 AAAAAAATTCA
1 AAAAAAATTCG
61905451 AAAAAAATTCG
1 AAAAAAATTCG
*
61905462 AAAAAAATTAG
1 AAAAAAATTCG
61905473 AAAAA
1 AAAAA
61905478 CATTTTGAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.71, C:0.04, G:0.06, T:0.18
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:61906559 original size:30 final size:28
Alignment explanation
Indices: 61906525--61906581 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
61906515 AGTCGAAAAA
* *
61906525 GAAAAAGAGTGTGTGCAAGAAAGTAAAGTT
1 GAAAAAGAGAGTGAGCAA-AAAG-AAAGTT
61906555 GAAAAAGAGAGTGAGCAAAAAGAAAGT
1 GAAAAAGAGAGTGAGCAAAAAGAAAGT
61906582 ATGGAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.20
29 4 0.16
30 16 0.64
ACGTcount: A:0.53, C:0.04, G:0.30, T:0.14
Consensus pattern (28 bp):
GAAAAAGAGAGTGAGCAAAAAGAAAGTT
Found at i:61913520 original size:31 final size:31
Alignment explanation
Indices: 61913482--61913589 Score: 189
Period size: 31 Copynumber: 3.5 Consensus size: 31
61913472 TACCAGTTAT
61913482 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
61913513 TGGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
61913544 TGGGCCGAAGCCTTTTCATAAATCATTTCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
* *
61913575 TGGGTCGAAACCTTT
1 TGGGCCGAAGCCTTT
61913590 ACTGTGAACG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:61913685 original size:42 final size:42
Alignment explanation
Indices: 61913613--61913703 Score: 137
Period size: 42 Copynumber: 2.2 Consensus size: 42
61913603 TGGCCCATAG
* ** *
61913613 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
61913655 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
61913697 GCCCATT
1 GCCCATT
61913704 CGGGGAGACT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:61914283 original size:27 final size:27
Alignment explanation
Indices: 61914230--61914359 Score: 120
Period size: 27 Copynumber: 4.8 Consensus size: 27
61914220 TTTCATCCTA
* * * *
61914230 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
61914257 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
61914284 TAGGGGTATTTTGGTAATTTTATAAATT
1 CAAGGGTATTTTGGTAATTTTATAAA-T
* * *
61914312 C-AGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
61914337 CCAGTGGTATTTTGGTAATTTTA
1 CAAG-GGTATTTTGGTAATTTTA
61914360 CAAACTAGTT
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 79 0.95
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:61914317 original size:54 final size:54
Alignment explanation
Indices: 61914233--61914363 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
61914223 CATCCTACAA
* * * ** *** **
61914233 GGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAACCAG
*
61914287 GGGTATTTTGGTAATTTTATAAATTC-AGGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAA-TCAAGGGTATTTCGGTAATTTCACAAACCAG
*
61914341 TGGTATTTTGGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
61914364 CTAGTTTTGG
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
54 61 0.97
55 2 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAACCAG
Found at i:61914440 original size:27 final size:27
Alignment explanation
Indices: 61914410--61914501 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
61914400 ATAATTTCAC
* *
61914410 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
61914437 AATC-AGGGGTAAAATAGTAATTCTGTAA
1 AATCGA-GGGTAAAATAGTAATTCTGT-A
* *
61914465 AAT-GAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
61914491 AATCGAGGGTA
1 AATCGAGGGTA
61914502 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
26 5 0.09
27 47 0.82
28 5 0.09
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTGTA
Found at i:61914510 original size:27 final size:26
Alignment explanation
Indices: 61914480--61914702 Score: 83
Period size: 27 Copynumber: 8.2 Consensus size: 26
61914470 GGGTAAAACA
61914480 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTA-TTTG
* * *
61914507 GTAATT-TTTACATGTCGAGGGTATTTCA
1 GTAATTCTATA-A-ATCGAGGGTATTT-G
* * * *
61914535 GTAATTTTACAATTC-AGGGGTATTTTA
1 GTAATTCTATAAATCGA-GGGTA-TTTG
* * * *
61914562 GTAATTTTACAAA-CCAGGGGTATTGTA
1 GTAATTCTATAAATCGA-GGGTATT-TG
* * * * ***
61914589 GTAATTTTTTAAATCCAGGTTAAAACG
1 GTAATTCTATAAATCGAGGGT-ATTTG
* * **
61914616 GTAGTTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGT-ATTTG
***
61914643 GTAATTCTATAAATCGAGGGTAGAACG
1 GTAATTCTATAAATCGAGGGTA-TTTG
*
61914670 GTAATTCTATAAATCGGGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTA-TTTG
61914697 GTAATT
1 GTAATT
61914703 TGGTAAACTA
Statistics
Matches: 156, Mismatches: 29, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
26 8 0.05
27 123 0.79
28 23 0.15
29 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (26 bp):
GTAATTCTATAAATCGAGGGTATTTG
Found at i:61914607 original size:28 final size:28
Alignment explanation
Indices: 61914539--61914607 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
61914529 ATTTCAGTAA
* *
61914539 TTTTACAATTCAGGGGTATTTTAGTAATT
1 TTTTA-AATCCAGGGGTATTGTAGTAATT
**
61914568 TTACAAA-CCAGGGGTATTGTAGTAATT
1 TTTTAAATCCAGGGGTATTGTAGTAATT
61914595 TTTTAAATCCAGG
1 TTTTAAATCCAGG
61914608 TTAAAACGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 23 0.70
28 7 0.21
29 3 0.09
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (28 bp):
TTTTAAATCCAGGGGTATTGTAGTAATT
Found at i:61914702 original size:54 final size:54
Alignment explanation
Indices: 61914589--61914691 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 54
61914579 GGGTATTGTA
* * * * *
61914589 GTAATTTTTTAAATCCAGGTTAAAACGGTAGTTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
* * *
61914643 GTAATTCTATAAATCGAGGGTAGAACGGTAATTCTATAAATCGGGGGTA
1 GTAATTCTATAAATCCAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
61914692 CTTTGGTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (54 bp):
GTAATTCTATAAATCCAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATG
Found at i:61916992 original size:31 final size:31
Alignment explanation
Indices: 61916915--61916992 Score: 131
Period size: 30 Copynumber: 2.5 Consensus size: 31
61916905 TTTATCGGTT
61916915 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
61916946 ACT-GGCCGAATCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
61916976 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
61916993 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 28 0.65
31 15 0.35
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:61917063 original size:42 final size:42
Alignment explanation
Indices: 61917016--61917107 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
61917006 TGGCCCATAG
* **
61917016 GCCCATTTCAATATCACATGTAATGTCAAT-AGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGA-ATGTATGCAA
*
61917058 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
61917100 CCCCATTT
1 GCCCATTT
61917108 GAGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:61917281 original size:25 final size:25
Alignment explanation
Indices: 61917240--61917307 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
61917230 CTGGAGGCCT
61917240 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
61917264 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
61917289 AGCCCTTTTCAATAAACTG
1 AGCCCTTTTCAATAAACTG
61917308 CCTTTTCGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 5 0.13
24 5 0.13
25 28 0.74
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:61917328 original size:41 final size:42
Alignment explanation
Indices: 61917267--61917349 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 42
61917257 GGGGCAAAGC
*
61917267 CCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTG
1 CCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATAAACTG
61917308 CCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATAAACTG
1 CCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATAAACTG
61917350 GGGCATAAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 20 0.50
42 20 0.50
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (42 bp):
CCTTTTCGGTAAACTAGGGCATAAGCCCTTTTCAATAAACTG
Found at i:61917338 original size:26 final size:26
Alignment explanation
Indices: 61917308--61917365 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
61917298 CAATAAACTG
**
61917308 CCTTTTCGGTAAACTAGGGCATAAGC
1 CCTTTTCAATAAACTAGGGCATAAGC
*
61917334 CCTTTTCAATAAACTGGGGCATAAGC
1 CCTTTTCAATAAACTAGGGCATAAGC
61917360 CCTTTT
1 CCTTTT
61917366 GCACTTCCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
CCTTTTCAATAAACTAGGGCATAAGC
Found at i:61917441 original size:20 final size:20
Alignment explanation
Indices: 61917416--61917481 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
61917406 TATGAATACG
61917416 TCATGTGCATTTCATATATA
1 TCATGTGCATTTCATATATA
* *
61917436 TCATGTGCATTTTATACATA
1 TCATGTGCATTTCATATATA
* *
61917456 TCATATGCATATCATATCA-A
1 TCATGTGCATTTCATAT-ATA
61917476 TCATGT
1 TCATGT
61917482 ATATCATATC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 37 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (20 bp):
TCATGTGCATTTCATATATA
Found at i:61917487 original size:18 final size:16
Alignment explanation
Indices: 61917448--61917491 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
61917438 ATGTGCATTT
61917448 TATA-CATATCATATG
1 TATATCATATCATATG
*
61917463 CATATCATATCAATCATG
1 TATATCATATC-AT-ATG
61917481 TATATCATATC
1 TATATCATATC
61917492 CCACGTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 6 0.25
17 2 0.08
18 13 0.54
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.39
Consensus pattern (16 bp):
TATATCATATCATATG
Found at i:61917562 original size:23 final size:25
Alignment explanation
Indices: 61917517--61917562 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61917507 ATAATTAAAC
*
61917517 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTATAATAGTCATTTTTA
61917542 CCTAGGGGTA-AA-AGTCATTTT
1 CCTAGGGGTATAATAGTCATTTT
61917563 CATACTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (25 bp):
CCTAGGGGTATAATAGTCATTTTTA
Found at i:61918412 original size:27 final size:26
Alignment explanation
Indices: 61918279--61918414 Score: 119
Period size: 27 Copynumber: 5.1 Consensus size: 26
61918269 ATTTCATCCT
* * *
61918279 ACAAGGGTGTTTTGGTAAATCTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* **
61918305 ATCAAGGGTATTTTTGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
**
61918332 ATTAGAGGTATTTTGGTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
** * *
61918359 ATTGAGGGTATTTCGGTAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
61918386 ACCAGTGGTATTTTGGTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
61918413 AC
1 AC
61918415 TAGTTTTGGT
Statistics
Matches: 88, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.06
27 80 0.91
28 3 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:61918497 original size:27 final size:27
Alignment explanation
Indices: 61918459--61918740 Score: 160
Period size: 27 Copynumber: 10.4 Consensus size: 27
61918449 GTAATTTCAC
* *
61918459 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
61918486 AATC-AGGGGTAAAATAGTAATTCTGTA
1 AATCGA-GGGTAAAATAGTAATTCTGTA
* *
61918513 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
*** * *
61918540 AATCGAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
** * **
61918566 CAAGTCGAGGGT-ATTTCAGTAATTTTACA
1 -AA-TCGAGGGTAAAAT-AGTAATTCTGTA
* *** * *
61918595 AATCAGGGGGTATTTTAGTAATTTTATA
1 AATC-GAGGGTAAAATAGTAATTCTGTA
* *** * *
61918623 AA-CCAGGGGTATTTTAGTAATTTTTTA
1 AATCGA-GGGTAAAATAGTAATTCTGTA
** *
61918650 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* * *
61918677 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTGTA
* *
61918704 AATCGAGGGTAGAACAGTAATT-TGTA
1 AATCGAGGGTAAAATAGTAATTCTGTA
*
61918730 AATCGGGGGTA
1 AATCGAGGGTA
61918741 CTTCGGTAAT
Statistics
Matches: 209, Mismatches: 36, Indels: 21
0.79 0.14 0.08
Matches are distributed among these distances:
26 17 0.08
27 150 0.72
28 37 0.18
29 5 0.02
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTGTA
Found at i:61918524 original size:54 final size:53
Alignment explanation
Indices: 61918459--61918740 Score: 183
Period size: 54 Copynumber: 5.2 Consensus size: 53
61918449 GTAATTTCAC
* * *
61918459 AATCGAGGGTAAAATGGTAATTTTGTAAATC-AGGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGA-GGGTAAAATAGTAATT-TATA
* * *** * *
61918513 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTTATA
** * * ***
61918566 CAAGTCGAGGGT-ATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTATA
1 -AA-TCGAGGGTAAAAT-AGTAATTTTATAAATC-GAGGGTAAAATAGTAA-TTTATA
* *** * **
61918623 AA-CCAGGGGTATTTTAGTAATTTTTTAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGA-GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATT-TATA
* * * * * *
61918677 AATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACAGTAATTTGTA
1 AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTTATA
*
61918730 AATCGGGGGTA
1 AATCGAGGGTA
61918741 CTTCGGTAAT
Statistics
Matches: 177, Mismatches: 41, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
53 17 0.10
54 95 0.54
55 42 0.24
56 18 0.10
57 5 0.03
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (53 bp):
AATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTTATA
Found at i:61918577 original size:28 final size:27
Alignment explanation
Indices: 61918539--61918660 Score: 108
Period size: 28 Copynumber: 4.4 Consensus size: 27
61918529 GTAATTCTAT
*
61918539 AAATCGAGGGTACTTTGGTAATTTTTAC
1 AAATCGAGGGTA-TTTAGTAATTTTTAC
*
61918567 AAGTCGAGGGTATTTCAGTAA-TTTTAC
1 AAATCGAGGGTATTT-AGTAATTTTTAC
* *
61918594 AAATCAGGGGGTATTTTAGTAA-TTTTAT
1 AAATC-GAGGGTA-TTTAGTAATTTTTAC
* *
61918622 AAA-CCAGGGGTATTTTAGTAATTTTT-T
1 AAATCGA-GGGTA-TTTAGTAATTTTTAC
61918649 AAATCGAGGGTA
1 AAATCGAGGGTA
61918661 AAACGGTAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
27 37 0.46
28 40 0.50
29 3 0.04
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTAGTAATTTTTAC
Found at i:61918589 original size:55 final size:54
Alignment explanation
Indices: 61918527--61918660 Score: 146
Period size: 55 Copynumber: 2.4 Consensus size: 54
61918517 GAGGGTAAAA
* * *
61918527 CAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTT-TACAAGTC-GAGGGTATTT
1 CAGTAATTTTATAAATCGAGGGTACTTTAGTAATTTTATA-AA-CCAG-GGGTATTT
* * *
61918582 CAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTATAAACCAGGGGTATTT
1 CAGTAATTTTATAAATC-GAGGGTACTTTAGTAATTTTATAAACCAGGGGTATTT
* *
61918637 TAGTAATTTTTTAAATCGAGGGTA
1 CAGTAATTTTATAAATCGAGGGTA
61918661 AAACGGTAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
54 6 0.09
55 38 0.58
56 20 0.30
57 2 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGTAATTTTATAAATCGAGGGTACTTTAGTAATTTTATAAACCAGGGGTATTT
Found at i:61921284 original size:25 final size:25
Alignment explanation
Indices: 61921242--61921377 Score: 159
Period size: 26 Copynumber: 5.4 Consensus size: 25
61921232 CTGGAGGCCT
*
61921242 AGCCTCTTTT-AAT-AACTGTGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
61921266 AGCCCTTTTCTGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
*
61921291 AGCCCTTTTCAATAAACTGGGGTAA
1 AGCCCTTTTCAATAAACTGGGGCAA
** *
61921316 AGGCCCTTTTCGGTAAACTAGGGCATA
1 A-GCCCTTTTCAATAAACTGGGGCA-A
61921343 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
61921369 AGCCCTTTT
1 AGCCCTTTT
61921378 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 33 0.35
26 50 0.53
27 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:61921362 original size:52 final size:50
Alignment explanation
Indices: 61921242--61921377 Score: 186
Period size: 52 Copynumber: 2.7 Consensus size: 50
61921232 CTGGAGGCCT
* * *
61921242 AGCCTCTTTT-AAT-AACTGTGGCAAAGCCCTTTTCTGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAAAGCCCTTTTCGGTAAACTAGGGCAA
*
61921291 AGCCCTTTTCAATAAACTGGGGTAAAGGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCAAA-GCCCTTTTCGGTAAACTAGGGCA-A
61921343 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCA-AAGCCCTTTT
61921378 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.13
51 21 0.27
52 32 0.42
53 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (50 bp):
AGCCCTTTTCAATAAACTGGGGCAAAGCCCTTTTCGGTAAACTAGGGCAA
Found at i:61921476 original size:20 final size:21
Alignment explanation
Indices: 61921427--61921477 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
61921417 TTATGAATAC
*
61921427 ATCATGTGC-TTTTCATACAT
1 ATCATATGCATTTTCATACAT
61921447 ATCA-AGTGCATTTT-ATACAT
1 ATCATA-TGCATTTTCATACAT
61921467 ATCATATGCAT
1 ATCATATGCAT
61921478 ATCATATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (21 bp):
ATCATATGCATTTTCATACAT
Found at i:61921499 original size:18 final size:16
Alignment explanation
Indices: 61921460--61921503 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
61921450 AAGTGCATTT
61921460 TATA-CATATCATATG
1 TATATCATATCATATG
*
61921475 CATATCATATCAATCATG
1 TATATCATATC-AT-ATG
61921493 TATATCATATC
1 TATATCATATC
61921504 CCACGTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 6 0.25
17 2 0.08
18 13 0.54
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.39
Consensus pattern (16 bp):
TATATCATATCATATG
Found at i:61922348 original size:27 final size:27
Alignment explanation
Indices: 61922295--61922680 Score: 93
Period size: 27 Copynumber: 14.3 Consensus size: 27
61922285 TTTCATCCTA
* * * **
61922295 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
*
61922322 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* * **
61922349 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
** * * ***
61922376 TGAGGGTATTTCGATAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* **
61922402 CCAGTGGTATTTT-GTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTGTAAAT
* * * * **
61922429 TAGGGGTGTTTTGGTAA--TTCTACCCT
1 CAAGGGTATTTTGGTAATTTTGTA-AAT
* * ** *
61922455 GTAGGGGTATTTCAGTAA-TTT-CACAAT
1 -CAAGGGTATTTTGGTAATTTTGTA-AAT
* ***
61922482 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* *** *
61922509 CAGGGGTAAAATAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* **** * *
61922536 CGAGGGTCA-AACAGTAATTCTATAAAT
1 CAAGGGT-ATTTTGGTAATTTTGTAAAT
* * * *
61922563 CGAGGGTACTTTGGTAATTTTTGCAAGT
1 CAAGGGTATTTTGGTAA-TTTTGTAAAT
* * **
61922591 CTAGGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
* * ** *
61922618 CAGGGGGTATTTTAGTAATTTTACAAAC
1 CA-AGGGTATTTTGGTAATTTTGTAAAT
* *
61922646 CAAGGATATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAT
*
61922673 CGAGGGTA
1 CAAGGGTA
61922681 AAACGGTAAT
Statistics
Matches: 272, Mismatches: 75, Indels: 24
0.73 0.20 0.06
Matches are distributed among these distances:
25 3 0.01
26 31 0.11
27 189 0.69
28 49 0.18
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAT
Found at i:61922360 original size:26 final size:26
Alignment explanation
Indices: 61922315--61922447 Score: 124
Period size: 27 Copynumber: 5.0 Consensus size: 26
61922305 TTGGTAAATC
* *
61922315 TACAAATCAAGGGTATTTTTGTAATTT
1 TACAAATTAGGGGTA-TTTTGTAATTT
**
61922342 TGTAAATTAGGGGTATTTTGGTAATTT
1 TACAAATTAGGGGTATTTT-GTAATTT
*
61922369 TACAAATT-GAGGGTATTTCGATAATTT
1 TACAAATTAG-GGGTATTTTG-TAATTT
* ** *
61922396 CACAAACCAGTGGTATTTTGTAATTT
1 TACAAATTAGGGGTATTTTGTAATTT
*
61922422 TACAAATTAGGGGTGTTTTGGTAATT
1 TACAAATTAGGGGTATTTT-GTAATT
61922448 CTACCCTGTA
Statistics
Matches: 84, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
26 26 0.31
27 57 0.68
28 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (26 bp):
TACAAATTAGGGGTATTTTGTAATTT
Found at i:61922394 original size:54 final size:53
Alignment explanation
Indices: 61922298--61922447 Score: 133
Period size: 54 Copynumber: 2.8 Consensus size: 53
61922288 CATCCTACAA
* * * * * *** **
61922298 GGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAAT-TAGGGTATTTTCGTAATTTCACAAACCAG
61922352 GGGTATTTTGGTAATTTTACAAATTGAGGGTA-TTTCGATAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATT-AGGGTATTTTCG-TAATTTCACAAACCAG
* * *
61922406 TGGTATTTT-GTAATTTTACAAATTAGGGGTGTTTTGGTAATT
1 GGGTATTTTGGTAATTTTACAAATTA-GGGTATTTTCGTAATT
61922448 CTACCCTGTA
Statistics
Matches: 79, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
52 1 0.01
53 28 0.35
54 50 0.63
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.43
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATTAGGGTATTTTCGTAATTTCACAAACCAG
Found at i:61922463 original size:80 final size:81
Alignment explanation
Indices: 61922326--61922480 Score: 201
Period size: 80 Copynumber: 1.9 Consensus size: 81
61922316 ACAAATCAAG
** *
61922326 GGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC-GA
1 GGTATTTTTGTAATTTTACAAATTAGGGGTATTTTGGTAATTCTACAAATTGAGGGTATTTCAG-
61922390 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
* **
61922407 GGTA-TTTTGTAATTTTACAAATTAGGGGTGTTTTGGTAATTCTAC--CCTGTAGGGGTATTTCA
1 GGTATTTTTGTAATTTTACAAATTAGGGGTATTTTGGTAATTCTACAAATTG-A-GGGTATTTCA
61922469 GTAATTTCACAA
64 GTAATTTCACAA
61922481 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.03
79 1 0.02
80 57 0.88
81 5 0.08
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (81 bp):
GGTATTTTTGTAATTTTACAAATTAGGGGTATTTTGGTAATTCTACAAATTGAGGGTATTTCAGT
AATTTCACAAACCAGT
Found at i:61922514 original size:80 final size:80
Alignment explanation
Indices: 61922335--61922516 Score: 192
Period size: 80 Copynumber: 2.3 Consensus size: 80
61922325 GGGTATTTTT
*
61922335 GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACA
1 GTAATTTTGTAAATTAGGGGTATTTTGGTAATTCTACAAATTGAGGGTATTTCGATAATTTCACA
** *
61922400 AACCAGTGGTATTTT
66 AACCAGTGGTAAATG
** * **
61922415 GTAATTTTACAAATTAGGGGTGTTTTGGTAATTCTAC--CCTGTAGGGGTATTTC-AGTAATTTC
1 GTAATTTTGTAAATTAGGGGTATTTTGGTAATTCTACAAATTG-A-GGGTATTTCGA-TAATTTC
* *
61922477 ACAATCGAG-GGTAAAATG
63 ACAAACCAGTGGT-AAATG
*
61922495 GTAATTTTGTAAATCAGGGGTA
1 GTAATTTTGTAAATTAGGGGTA
61922517 AAATAGTAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
78 2 0.02
79 5 0.06
80 76 0.92
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (80 bp):
GTAATTTTGTAAATTAGGGGTATTTTGGTAATTCTACAAATTGAGGGTATTTCGATAATTTCACA
AACCAGTGGTAAATG
Found at i:61922618 original size:55 final size:54
Alignment explanation
Indices: 61922548--61922680 Score: 149
Period size: 55 Copynumber: 2.4 Consensus size: 54
61922538 AGGGTCAAAC
* * * ** * *
61922548 AGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTGCAAGTCTAGGGTATTTT
1 AGTAATTTTATAAATCGAGGGTACTTTAGTAA-TTTTACAAACCAAGGATATTTT
* * *
61922603 AGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACCAAGGATATTTT
1 AGTAATTTTATAAATC-GAGGGTACTTTAGTAATTTTACAAACCAAGGATATTTT
*
61922658 AGTAATTTTGTAAATCGAGGGTA
1 AGTAATTTTATAAATCGAGGGTA
61922681 AAACGGTAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
54 6 0.09
55 45 0.70
56 13 0.20
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (54 bp):
AGTAATTTTATAAATCGAGGGTACTTTAGTAATTTTACAAACCAAGGATATTTT
Found at i:61922625 original size:28 final size:27
Alignment explanation
Indices: 61922593--61922666 Score: 112
Period size: 28 Copynumber: 2.7 Consensus size: 27
61922583 TTGCAAGTCT
*
61922593 AGGGTATTTTAGTAATTTTACAAATCA
1 AGGGTATTTTAGTAATTTTACAAACCA
*
61922620 GGGGGTATTTTAGTAATTTTACAAACCA
1 -AGGGTATTTTAGTAATTTTACAAACCA
*
61922648 AGGATATTTTAGTAATTTT
1 AGGGTATTTTAGTAATTTT
61922667 GTAAATCGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 17 0.40
28 25 0.60
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.42
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAACCA
Found at i:61922689 original size:27 final size:27
Alignment explanation
Indices: 61922659--61922753 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
61922649 GGATATTTTA
* *
61922659 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61922686 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
61922713 GTAATTCTATAAATCGAGGGTAGAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
61922740 GTAATTCTGTAAAT
1 GTAATTCTATAAAT
61922754 TGGGGTACTT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:61922717 original size:54 final size:53
Alignment explanation
Indices: 61922659--61922778 Score: 159
Period size: 54 Copynumber: 2.2 Consensus size: 53
61922649 GGATATTTTA
61922659 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTG-GGGTAAAATG
* * * * ***
61922713 GTAATTCTATAAATCGAGGGTAGAACGGTAATTCTGTAAATTGGGGTACTTTG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGGGGTAAAATG
*
61922766 GTAATTTGGTAAA
1 GTAATTTTGTAAA
61922779 CTAAAGTATT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 17 0.30
54 39 0.70
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (53 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGGGGTAAAATG
Found at i:61925033 original size:30 final size:31
Alignment explanation
Indices: 61924982--61925090 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
61924972 TTTACCGGTT
*
61924982 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
61925013 ACTGGGCCGAAGCC-TTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
61925043 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
61925074 ACTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
61925091 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
30 30 0.41
31 44 0.59
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:61925418 original size:51 final size:51
Alignment explanation
Indices: 61925340--61925474 Score: 213
Period size: 51 Copynumber: 2.7 Consensus size: 51
61925330 CTGGAGGCCT
* *
61925340 AGCCTCTTTTAAT-AACTGCGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTAATAAACTGGGGCATAAGCCCTTTTCAGTAAACTGGGGCATA
61925389 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAGTAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCATAAGCCCTTTTCAGTAAACTGGGGCATA
61925441 AGCCCTTTTAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAAACTGGGGCATAAGCCCTTTT
61925475 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.11
51 49 0.61
52 10 0.12
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTAATAAACTGGGGCATAAGCCCTTTTCAGTAAACTGGGGCATA
Found at i:61925424 original size:26 final size:26
Alignment explanation
Indices: 61925340--61925474 Score: 190
Period size: 25 Copynumber: 5.3 Consensus size: 26
61925330 CTGGAGGCCT
*
61925340 AGCCTCTTTT-AAT-AACTGCGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
61925364 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
61925389 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
61925415 AGCCCTTTTCAGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
61925441 AGCCCTTTT-AATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
61925466 AGCCCTTTT
1 AGCCCTTTT
61925475 GCACTTCCTC
Statistics
Matches: 101, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 56 0.55
26 35 0.35
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:61925549 original size:20 final size:20
Alignment explanation
Indices: 61925524--61925590 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
61925514 TTATGAATAC
61925524 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
61925544 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
61925564 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
61925584 ATCATGT
1 ATCATGT
61925591 ACATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:61926479 original size:54 final size:54
Alignment explanation
Indices: 61926416--61926776 Score: 239
Period size: 54 Copynumber: 6.6 Consensus size: 54
61926406 TAAATCTACC
* * * * *
61926416 AATCAAGGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACA
1 AATCGAGGGTATTTTAGTAATTTTATAAATCAGGGGTATTTTAGTAATTTTACA
* * * * * * *
61926470 AATTGAGGGTA-TTTCGATAATTTCACAAACCAGTGGTATTTTGGTAATTTTACA
1 AATCGAGGGTATTTTAG-TAATTTTATAAATCAGGGGTATTTTAGTAATTTTACA
* * * * *** *
61926524 AA-CTAAGGGTGTTTTGGTAATTCTACCCTAT-AGGGGTATTTTAGTAATTTCAC-
1 AATC-GAGGGTATTTTAGTAATTTTA-TAAATCAGGGGTATTTTAGTAATTTTACA
*** * * *** **
61926577 AATCGAGGGTAAAATGGTAATTTTGTAAATCAGGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTATTTTAGTAATTTTATAAATCAGGGGTATTTTAGTAATTTTACA
* *** * * *
61926631 AATCAAGGGTAAAATAGTAATTCTATAAATC-GAGGGTACTTTGGTAATTTTTACA
1 AATCGAGGGTATTTTAGTAATTTTATAAATCAG-GGGTATTTTAGTAA-TTTTACA
* *
61926686 AGTCGAGGGTATTTTAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACA
1 AATCGAGGGTATTTTAGTAATTTTATAAATCA-GGGGTATTTTAGTAATTTTACA
* *
61926741 AA-CTAGGGGTATTTTAGTAATTTTTTAAATCGAGGG
1 AATCGA-GGGTATTTTAGTAATTTTATAAATC-AGGG
61926777 TAAAACGGTA
Statistics
Matches: 234, Mismatches: 60, Indels: 25
0.73 0.19 0.08
Matches are distributed among these distances:
52 2 0.01
53 37 0.16
54 112 0.48
55 69 0.29
56 13 0.06
57 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
AATCGAGGGTATTTTAGTAATTTTATAAATCAGGGGTATTTTAGTAATTTTACA
Found at i:61926695 original size:28 final size:27
Alignment explanation
Indices: 61926416--61926778 Score: 202
Period size: 27 Copynumber: 13.4 Consensus size: 27
61926406 TAAATCTACC
* * **
61926416 AATCAAGGGTATTTTTGTAATTTTGTA
1 AATCGAGGGTATTTTAGTAATTTTACA
* *
61926443 AAT-TAGGGGTATTTTGGTAATTTTACA
1 AATCGA-GGGTATTTTAGTAATTTTACA
* * *
61926470 AATTGAGGGTA-TTTCGATAATTTCACA
1 AATCGAGGGTATTTTAG-TAATTTTACA
* *
61926497 AA-CCAGTGGTATTTTGGTAATTTTACA
1 AATCGAG-GGTATTTTAGTAATTTTACA
* * * * *
61926524 AA-CTAAGGGTGTTTTGGTAATTCTACCC
1 AATC-GAGGGTATTTTAGTAATTTTA-CA
* * *
61926552 TATAG-GGGTATTTTAGTAATTTCAC-
1 AATCGAGGGTATTTTAGTAATTTTACA
*** * **
61926577 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTATTTTAGTAATTTTACA
*** **
61926604 AATC-AGGGGTAAAATAGTAATTTTGTA
1 AATCGA-GGGTATTTTAGTAATTTTACA
* *** * *
61926631 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTATTTTAGTAATTTTACA
* *
61926658 AATCGAGGGTACTTTGGTAATTTTTACA
1 AATCGAGGGTATTTTAGTAA-TTTTACA
*
61926686 AGTCGAGGGTATTTTAGTAATTTTACA
1 AATCGAGGGTATTTTAGTAATTTTACA
*
61926713 AATCAGGGGGTATTTTAGTAATTTTACA
1 AATC-GAGGGTATTTTAGTAATTTTACA
* **
61926741 AA-CTAGGGGTATTTTAGTAATTTTTTA
1 AATCGA-GGGTATTTTAGTAATTTTACA
61926768 AATCGAGGGTA
1 AATCGAGGGTA
61926779 AAACGGTAAT
Statistics
Matches: 269, Mismatches: 51, Indels: 32
0.76 0.14 0.09
Matches are distributed among these distances:
25 3 0.01
26 22 0.08
27 186 0.69
28 58 0.22
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AATCGAGGGTATTTTAGTAATTTTACA
Found at i:61926716 original size:55 final size:54
Alignment explanation
Indices: 61926645--61926778 Score: 162
Period size: 55 Copynumber: 2.4 Consensus size: 54
61926635 AAGGGTAAAA
* * *
61926645 TAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAAGTCGA-GGGTATTT
1 TAGTAATTTTATAAATCGAGGGTACTTTAGTAA-TTTTACAA-ACGAGGGGTATTT
* * * *
61926700 TAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
1 TAGTAATTTTATAAATC-GAGGGTACTTTAGTAATTTTACAAACGAGGGGTATTT
*
61926755 TAGTAATTTTTTAAATCGAGGGTA
1 TAGTAATTTTATAAATCGAGGGTA
61926779 AAACGGTAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
54 8 0.12
55 46 0.69
56 13 0.19
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
TAGTAATTTTATAAATCGAGGGTACTTTAGTAATTTTACAAACGAGGGGTATTT
Found at i:61926787 original size:27 final size:27
Alignment explanation
Indices: 61926757--61926858 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
61926747 GGGTATTTTA
* *
61926757 GTAATTTTTTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61926784 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
61926811 GTAATTCTATAAATCGAGCGTAGAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
61926838 GTAATTCTGTAAATCG-GGGTA
1 GTAATTCTATAAATCGAGGGTA
61926859 CTTTGGTAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.06
27 61 0.94
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Done.