Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 209 of 328
Found at i:62634000 original size:40 final size:39
Alignment explanation
Indices: 62633811--62633993 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 39
62633801 CGAATGATGT
* * *
62633811 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
62633851 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
62633890 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62633928 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62633969 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
62633994 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 26 0.20
39 20 0.16
40 71 0.56
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62642585 original size:71 final size:71
Alignment explanation
Indices: 62642501--62642664 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
62642491 CGATTTGTCT
62642501 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
62642566 CTTTCA
66 CTTTCA
* *
62642572 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
62642637 CTTTCA
66 CTTTCA
62642643 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62642665 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:62642702 original size:71 final size:70
Alignment explanation
Indices: 62642501--62642698 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
62642491 CGATTTGTCT
* * * *
62642501 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
62642566 CTTTCA
65 CTTTCA
* * *
62642572 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
62642637 CTTTCA
65 CTTTCA
* *
62642643 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
62642699 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 94 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62645888 original size:30 final size:30
Alignment explanation
Indices: 62645852--62646011 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
62645842 GACAAGATTG
* * * * *
62645852 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
62645882 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
62645910 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62645939 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62645969 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62645998 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62646012 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:62645979 original size:59 final size:57
Alignment explanation
Indices: 62645852--62646011 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
62645842 GACAAGATTG
* * * * * *
62645852 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
62645910 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
62645969 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
62646012 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:62657280 original size:30 final size:30
Alignment explanation
Indices: 62657244--62657403 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
62657234 GACAAGATTG
* * * * *
62657244 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
62657274 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
62657302 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62657331 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62657361 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62657390 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62657404 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:62657371 original size:59 final size:57
Alignment explanation
Indices: 62657244--62657403 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
62657234 GACAAGATTG
* * * * * *
62657244 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
62657302 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
62657361 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
62657404 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:62664673 original size:70 final size:71
Alignment explanation
Indices: 62664590--62664752 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
62664580 CGATTTGTCT
62664590 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62664654 CTTTCA
66 CTTTCA
*
62664660 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62664725 CTTTCA
66 CTTTCA
62664731 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62664753 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:62664790 original size:71 final size:70
Alignment explanation
Indices: 62664590--62664786 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
62664580 CGATTTGTCT
* * * *
62664590 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62664654 CTTTCA
65 CTTTCA
* * * *
62664660 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62664725 CTTTCA
65 CTTTCA
* *
62664731 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
62664787 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62666995 original size:40 final size:40
Alignment explanation
Indices: 62666804--62666995 Score: 180
Period size: 40 Copynumber: 4.8 Consensus size: 40
62666794 CCGAATGATG
* * * *
62666804 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAA
* * *
62666844 TCCGGACTAAGAT-CCGAAGGAATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTAAA
** *
62666883 TCCCGGGCTAA-AACCGAAGGCATTTGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
*
62666923 TCCGGGTTAAGTCCCGAAGGCATTT-ATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTA-AA
* *
62666964 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
62666996 AGCTATATCC
Statistics
Matches: 128, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
39 33 0.26
40 84 0.66
41 11 0.09
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAA
Found at i:62667010 original size:79 final size:77
Alignment explanation
Indices: 62666805--62667021 Score: 199
Period size: 79 Copynumber: 2.7 Consensus size: 77
62666795 CGAATGATGT
* *
62666805 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGAATT
1 CCGGGCT-AGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGAATT
* *
62666868 TGTGCGAGTTACTAATC
61 TATGCGAGTTACTAATA
*** * *
62666885 CCGGGCTAAAACCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTTA
1 CCGGGCTAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGAATTTA
62666949 TGCGAGTTACT-ATAA
63 TGCGAGTTACTAAT-A
** *
62666964 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTA-GTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
62667022 TACGTGATTT
Statistics
Matches: 112, Mismatches: 16, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
78 3 0.03
79 65 0.58
80 44 0.39
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (77 bp):
CCGGGCTAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGAATTTATGC
GAGTTACTAATA
Found at i:62675199 original size:22 final size:23
Alignment explanation
Indices: 62675162--62675213 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
62675152 CCAAATAGTT
*
62675162 AATATTATTAACTTTTTGATTAA
1 AATATTATAAACTTTTTGATTAA
62675185 AATATTA-AAACTTTTTGATTAA
1 AATATTATAAACTTTTTGATTAA
*
62675207 AACATTA
1 AATATTA
62675214 CATGGTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 20 0.74
23 7 0.26
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (23 bp):
AATATTATAAACTTTTTGATTAA
Found at i:62676448 original size:46 final size:48
Alignment explanation
Indices: 62676350--62676668 Score: 229
Period size: 46 Copynumber: 6.7 Consensus size: 48
62676340 TTATTGTGAG
* * **
62676350 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGTG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGAGATGTAGAC
*
62676398 CTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-AC
1 CTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTAGAC
*
62676444 CTAGTGTAAGA-CACGTCTGGGACATGCATCGG-CTATGAGATGT-G-C
1 CTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-TGAGATGTAGAC
* * * * *
62676489 C-AGTGTAAGACCATGTCTGGGACATGGCATTGACAC-GGATATGTGAGAG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTTGAGATGT-AGAC
* * **
62676538 CTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCT-ATTTTGATAG-C
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCT-TGA-GATG-TAGAC
* ***
62676588 C-AGTGTAAGACCATGTCTGAGACATGGCAT-TAACTTGATGGATG-AG-C
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGA--GATGTAGAC
*
62676635 C-AGTGTAAGGCCATGTCTGGGACATGGCATCGGC
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC
62676669 ATTATACCCA
Statistics
Matches: 220, Mismatches: 33, Indels: 36
0.76 0.11 0.12
Matches are distributed among these distances:
44 9 0.04
45 17 0.08
46 63 0.29
47 47 0.21
48 16 0.07
49 31 0.14
50 31 0.14
51 5 0.02
52 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGTAGAC
Found at i:62676612 original size:49 final size:50
Alignment explanation
Indices: 62676487--62676664 Score: 172
Period size: 49 Copynumber: 3.6 Consensus size: 50
62676477 TATGAGATGT
*
62676487 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGACACGGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATAGACACGGATATGTGAGA
* * * * * * *
62676537 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTC-TAT-TTTGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAT-AGACACGGATATGTGAGA
* * *
62676586 GCCAGTGTAAGACCATGTCTGAGACATGGCAT-TA-AC--TTGATG-GATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATAGACACGGAT-ATGTGA-GA
*
62676633 GCCAGTGTAAGGCCATGTCTGGGACATGGCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
62676665 CGGCATTATA
Statistics
Matches: 105, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 3 0.03
47 32 0.30
49 34 0.32
50 32 0.30
51 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (50 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATAGACACGGATATGTGAGA
Found at i:62676612 original size:99 final size:96
Alignment explanation
Indices: 62676487--62676662 Score: 257
Period size: 96 Copynumber: 1.8 Consensus size: 96
62676477 TATGAGATGT
* *
62676487 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGACACGGAT-ATGTGA-GAGCTAGTGTAAGAC
1 GCCAGTGTAAGACCATGTCTGAGACATGGCATT-A-AC--ATGATG-GATGAGCCAGTGTAAGAC
62676550 CATGTCTGGGACATGGCGTCAGCCTCTATTTTGATA
61 CATGTCTGGGACATGGCGTCAGCCTCTATTTTGATA
* *
62676586 GCCAGTGTAAGACCATGTCTGAGACATGGCATTAACTTGATGGATGAGCCAGTGTAAGGCCATGT
1 GCCAGTGTAAGACCATGTCTGAGACATGGCATTAACATGATGGATGAGCCAGTGTAAGACCATGT
62676651 CTGGGACATGGC
66 CTGGGACATGGC
62676663 ATCGGCATTA
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
95 3 0.04
96 33 0.46
97 2 0.03
98 1 0.01
99 32 0.45
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGAGACATGGCATTAACATGATGGATGAGCCAGTGTAAGACCATGT
CTGGGACATGGCGTCAGCCTCTATTTTGATA
Found at i:62678922 original size:7 final size:7
Alignment explanation
Indices: 62678867--62679176 Score: 104
Period size: 7 Copynumber: 43.0 Consensus size: 7
62678857 ATTTTCTATA
62678867 GTTTAGG
1 GTTTAGG
*
62678874 GTTTTATG
1 G-TTTAGG
*
62678882 GTTTTGG
1 GTTTAGG
*
62678889 ATTTAGG
1 GTTTAGG
*
62678896 GTTTAAG
1 GTTTAGG
**
62678903 GTTTAAA
1 GTTTAGG
62678910 GTTTAGG
1 GTTTAGG
*
62678917 GTTTAGA
1 GTTTAGG
*
62678924 GTTT-GT
1 GTTTAGG
*
62678930 ATTTAAGG
1 GTTT-AGG
*
62678938 GTTTAATG
1 GTTT-AGG
*
62678946 GTTTAGT
1 GTTTAGG
* *
62678953 GATTCGG
1 GTTTAGG
62678960 GTTTAGAG
1 GTTTAG-G
* *
62678968 TTTTAAG
1 GTTTAGG
* *
62678975 ATTTAAG
1 GTTTAGG
* * *
62678982 ATTTTGT
1 GTTTAGG
*
62678989 ATTTAGGG
1 GTTTA-GG
62678997 GTTTAAGG
1 GTTT-AGG
**
62679005 GTTTAAT
1 GTTTAGG
* **
62679012 GTCTATA
1 GTTTAGG
62679019 GTTTAGG
1 GTTTAGG
*
62679026 GTTTATG
1 GTTTAGG
62679033 GTTTAGG
1 GTTTAGG
*
62679040 ATTTAGG
1 GTTTAGG
62679047 GTTT-GG
1 GTTTAGG
62679053 GCTTTAGG
1 G-TTTAGG
*
62679061 GTTTAAG
1 GTTTAGG
*
62679068 GTTTATAG
1 GTTTA-GG
*
62679076 TTTTAGG
1 GTTTAGG
*
62679083 ATTTAGG
1 GTTTAGG
*
62679090 ATTTAGG
1 GTTTAGG
*
62679097 ATTTAGG
1 GTTTAGG
* * *
62679104 ATTTTGT
1 GTTTAGG
*
62679111 ATTTAAGG
1 GTTT-AGG
*
62679119 GCTTAAGG
1 G-TTTAGG
62679127 GTTTAGTG
1 GTTTAG-G
*
62679135 ATTTA-G
1 GTTTAGG
62679141 GTTTAGG
1 GTTTAGG
*
62679148 GTTTAAG
1 GTTTAGG
62679155 GTTTAGAG
1 GTTTAG-G
*
62679163 TTTTAGG
1 GTTTAGG
*
62679170 ATTTAGG
1 GTTTAGG
62679177 ATTTTGTATT
Statistics
Matches: 228, Mismatches: 61, Indels: 28
0.72 0.19 0.09
Matches are distributed among these distances:
6 12 0.05
7 156 0.68
8 57 0.25
9 3 0.01
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:62679036 original size:14 final size:14
Alignment explanation
Indices: 62679019--62679196 Score: 110
Period size: 14 Copynumber: 12.4 Consensus size: 14
62679009 AATGTCTATA
* *
62679019 GTTTAGGGTTTATG
1 GTTTAGGATTTAGG
62679033 GTTTAGGATTTAGG
1 GTTTAGGATTTAGG
* *
62679047 GTTTGGGCTTTAGG
1 GTTTAGGATTTAGG
*
62679061 GTTTAAGG-TTTATAG
1 GTTT-AGGATTTA-GG
*
62679076 TTTTAGGATTTAGG
1 GTTTAGGATTTAGG
*
62679090 ATTTAGGATTTAGG
1 GTTTAGGATTTAGG
* * *
62679104 ATTTTGTATTTAAGG
1 GTTTAGGATTT-AGG
* *
62679119 GCTTAAGGGTTTAGTG
1 G-TTTAGGATTTAG-G
*
62679135 ATTTAGG-TTTAGG
1 GTTTAGGATTTAGG
62679148 GTTTAAGG-TTTAGAG
1 GTTT-AGGATTTAG-G
*
62679163 TTTTAGGATTTAGG
1 GTTTAGGATTTAGG
* * *
62679177 ATTTTGTATTTAAGG
1 GTTTAGGATTT-AGG
62679192 GTTTA
1 GTTTA
62679197 AGTGACTTTT
Statistics
Matches: 129, Mismatches: 25, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
13 4 0.03
14 83 0.64
15 35 0.27
16 7 0.05
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.47
Consensus pattern (14 bp):
GTTTAGGATTTAGG
Found at i:62679044 original size:21 final size:21
Alignment explanation
Indices: 62678868--62679107 Score: 115
Period size: 21 Copynumber: 11.1 Consensus size: 21
62678858 TTTTCTATAG
*
62678868 TTTAGGGTTTTATGGTTTTGGA
1 TTTAGGG-TTTATGGTTTAGGA
* *
62678890 TTTAGGGTTTAAGGTTTA-AA
1 TTTAGGGTTTATGGTTTAGGA
*
62678910 GTTTAGGGTTTA-GAGTTT-GTA
1 -TTTAGGGTTTATG-GTTTAGGA
62678931 TTTAAGGGTTTAATGGTTTAGTGA
1 TTT-AGGGTTT-ATGGTTTAG-GA
* *
62678955 -TTCGGGTTTA-GAGTTTTAAGA
1 TTTAGGGTTTATG-G-TTTAGGA
* * * *
62678976 TTTAAGATTT-TGTATTTAGGGG
1 TTTAGGGTTTATG-GTTTA-GGA
62678998 TTTAAGGGTTTAAT-GTCTATA-G-
1 TTT-AGGGTTT-ATGGT-T-TAGGA
62679020 TTTAGGGTTTATGGTTTAGGA
1 TTTAGGGTTTATGGTTTAGGA
* *
62679041 TTTAGGGTTT-GGGCTTTAGGG
1 TTTAGGGTTTATGG-TTTAGGA
* *
62679062 TTTAAGGTTTATAGTTTTAGGA
1 TTTAGGGTTTAT-GGTTTAGGA
*
62679084 TTTAGGATTTA-GGATTTAGGA
1 TTTAGGGTTTATGG-TTTAGGA
62679105 TTT
1 TTT
62679108 TGTATTTAAG
Statistics
Matches: 167, Mismatches: 26, Indels: 51
0.68 0.11 0.21
Matches are distributed among these distances:
19 2 0.01
20 13 0.08
21 84 0.50
22 51 0.31
23 12 0.07
24 2 0.01
25 3 0.02
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.47
Consensus pattern (21 bp):
TTTAGGGTTTATGGTTTAGGA
Found at i:62679542 original size:40 final size:40
Alignment explanation
Indices: 62679491--62679655 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
62679481 TTTTGTGGCG
* * *
62679491 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCA
* *
62679531 TTTTTCAAAAAGCACCACTAATGCTCAATCTATAGCGGCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCA
** * * *
62679571 TTTTTTGAAAAGAGCCGCTAATGCTCAATCTATAGTGACA
1 TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCA
* * * **
62679611 TTTTTCAGAAAGCGCTGCTAATGCTCGATCTATAATGGCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCA
62679651 TTTTT
1 TTTTT
62679656 ATATAAACGT
Statistics
Matches: 105, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCA
Found at i:62681698 original size:13 final size:13
Alignment explanation
Indices: 62681680--62681704 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62681670 ACCATGGCAT
62681680 CGATATGTGTTTC
1 CGATATGTGTTTC
62681693 CGATATGTGTTT
1 CGATATGTGTTT
62681705 ACGAGTAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.24, T:0.48
Consensus pattern (13 bp):
CGATATGTGTTTC
Found at i:62687197 original size:27 final size:28
Alignment explanation
Indices: 62687138--62687206 Score: 122
Period size: 27 Copynumber: 2.5 Consensus size: 28
62687128 AAATTTGTAC
*
62687138 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCCAGTTTGATTATAT
62687166 AGCACTAAGTGTGCCAGTTT-ATTATAT
1 AGCACTAAGTGTGCCAGTTTGATTATAT
62687193 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
62687207 GGACTCACTA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCCAGTTTGATTATAT
Found at i:62687218 original size:27 final size:27
Alignment explanation
Indices: 62687138--62687219 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
62687128 AAATTTGTAC
* *
62687138 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCG-GATTCATTATAT
* *
62687166 AGCACTAAGTGTGC-CAGTTTATTATAT
1 AGCACTAAGTGTGCGGA-TTCATTATAT
* *
62687193 AGCACTAAGTGTGCGGACTCACTATAT
1 AGCACTAAGTGTGCGGATTCATTATAT
62687220 GCTTTTGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
27 30 0.67
28 15 0.33
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGATTCATTATAT
Found at i:62695398 original size:42 final size:42
Alignment explanation
Indices: 62695279--62695400 Score: 174
Period size: 43 Copynumber: 2.9 Consensus size: 42
62695269 TACCGTACCA
*
62695279 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATCG
* *
62695321 ATGCCAATAGCCTA-ACTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCTAGA-TATGGTCTTACACGTAATCTCATATCG
* *
62695364 ATGCCATATCCCAGGTATGGTCTTACACGTAATCTCA
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
62695401 ATAACCCTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
42 33 0.47
43 37 0.53
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATCG
Found at i:62697911 original size:23 final size:23
Alignment explanation
Indices: 62697884--62697932 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
62697874 CAATTTATTA
62697884 ATTAACATATTTGTTTATGAACT
1 ATTAACATATTTGTTTATGAACT
62697907 ATTAACATATTTGTTTATGAACT
1 ATTAACATATTTGTTTATGAACT
62697930 ATT
1 ATT
62697933 TATTTTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.49
Consensus pattern (23 bp):
ATTAACATATTTGTTTATGAACT
Found at i:62697936 original size:27 final size:27
Alignment explanation
Indices: 62697879--62697936 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 27
62697869 AACATCAATT
*
62697879 TATTAATTAACATATTTGTTTATGAAC
1 TATTTATTAACATATTTGTTTATGAAC
62697906 ----TATTAACATATTTGTTTATGAAC
1 TATTTATTAACATATTTGTTTATGAAC
62697929 TATTTATT
1 TATTTATT
62697937 TTCATCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
23 22 0.85
27 4 0.15
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (27 bp):
TATTTATTAACATATTTGTTTATGAAC
Found at i:62702102 original size:70 final size:70
Alignment explanation
Indices: 62702028--62702172 Score: 272
Period size: 70 Copynumber: 2.1 Consensus size: 70
62702018 GACAATAAAA
62702028 CAATTCATTTTATGCAATTTAGTCATTTTTGAAATTTTTAAAAAATTACCCCTAAATTTTTACTT
1 CAATTCATTTTATGCAATTTAGTCATTTTTGAAATTTTTAAAAAATTACCCCTAAATTTTTACTT
62702093 TTATT
66 TTATT
* *
62702098 CAATTCATTTTATGCAATTTATTCATTTTTGAAATTTTTAAAAAATTGCCCCTAAATTTTTACTT
1 CAATTCATTTTATGCAATTTAGTCATTTTTGAAATTTTTAAAAAATTACCCCTAAATTTTTACTT
62702163 TTATT
66 TTATT
62702168 CAATT
1 CAATT
62702173 TAGTCCTTGA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.32, C:0.13, G:0.04, T:0.50
Consensus pattern (70 bp):
CAATTCATTTTATGCAATTTAGTCATTTTTGAAATTTTTAAAAAATTACCCCTAAATTTTTACTT
TTATT
Found at i:62704166 original size:42 final size:42
Alignment explanation
Indices: 62704108--62704224 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 42
62704098 AGGGTTATTT
** * * *
62704108 GAGATTATGTGTAAGACTATATCTAGGATATGACATCGATAT
1 GAGATTACATGTAAGACCATATCTAGGATATGACATCAATAC
* *
62704150 GAGACTT-CATGTAAGACCATAGCTAGGATATTGGCATCAATAC
1 GAGA-TTACATGTAAGACCATATCTAGGATA-TGACATCAATAC
* * *
62704193 GAGATTACAGGTAAGACCATATTTGGGATATG
1 GAGATTACATGTAAGACCATATCTAGGATATG
62704225 GCATTGGTAC
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 27 0.44
43 34 0.56
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTAGGATATGACATCAATAC
Found at i:62715851 original size:27 final size:26
Alignment explanation
Indices: 62715796--62716026 Score: 130
Period size: 27 Copynumber: 8.5 Consensus size: 26
62715786 TTATGATACA
* * * *
62715796 CCACAGAGGCTTTCCTTTCACATTATG
1 CCACAAAGGCTTTTCTTTCAGAAT-TG
*
62715823 CCACAAAGGCATTTCTTTTCAGAATTG
1 CCACAAAGGCTTTTC-TTTCAGAATTG
* *
62715850 CCACCAAGACTTTTCTTTCAG-ATTACG
1 CCACAAAGGCTTTTCTTTCAGAATT--G
* ** * *
62715877 TCACAGGGGCATTTACTTTCATGAATTA
1 CCACAAAGGC-TTTTCTTTCA-GAATTG
*
62715905 CCACAAAGGCTTTTCATTCAG-ATTG
1 CCACAAAGGCTTTTCTTTCAGAATTG
** * *
62715930 CGTCATTAGGGCTTTCCTTTCATGAATTG
1 C--CACAAAGGCTTTTCTTTCA-GAATTG
*
62715959 CCATAAAGGCTTTTCATTT-AG-ATTG
1 CCACAAAGGCTTTTC-TTTCAGAATTG
*
62715984 CGC-CATTAGGGCTTTTCTTTCATGAATTG
1 C-CACA--AAGGCTTTTCTTTCA-GAATTG
62716013 CCACAAAGGCTTTT
1 CCACAAAGGCTTTT
62716027 AAATCTAAAA
Statistics
Matches: 154, Mismatches: 32, Indels: 36
0.69 0.14 0.16
Matches are distributed among these distances:
25 13 0.08
26 12 0.08
27 84 0.55
28 29 0.19
29 13 0.08
30 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (26 bp):
CCACAAAGGCTTTTCTTTCAGAATTG
Found at i:62715888 original size:54 final size:54
Alignment explanation
Indices: 62715830--62716026 Score: 240
Period size: 54 Copynumber: 3.6 Consensus size: 54
62715820 ATGCCACAAA
* * * *
62715830 GGCATTTCTTTTCA-GAATTGCCACCAAGACTTTTCTTTCAGATTACGTCA-CAGG
1 GGCATTTC-TTTCATGAATTGCCACAAAGGCTTTTCTTTCAGATTGCGTCATTA-G
* *
62715884 GGCATTTACTTTCATGAATTACCACAAAGGCTTTTCATTCAGATTGCGTCATTAG
1 GGCATTT-CTTTCATGAATTGCCACAAAGGCTTTTCTTTCAGATTGCGTCATTAG
* *
62715939 GGC-TTTCCTTTCATGAATTGCCATAAAGGCTTTTCATTT-AGATTGCGCCATTAG
1 GGCATTT-CTTTCATGAATTGCCACAAAGGCTTTTC-TTTCAGATTGCGTCATTAG
*
62715993 GGCTTTTCTTTCATGAATTGCCACAAAGGCTTTT
1 GGCATTTCTTTCATGAATTGCCACAAAGGCTTTT
62716027 AAATCTAAAA
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
54 84 0.67
55 41 0.33
56 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (54 bp):
GGCATTTCTTTCATGAATTGCCACAAAGGCTTTTCTTTCAGATTGCGTCATTAG
Found at i:62716120 original size:29 final size:29
Alignment explanation
Indices: 62716050--62716175 Score: 114
Period size: 29 Copynumber: 4.4 Consensus size: 29
62716040 TCGATGAAGC
* * *
62716050 TTCCTTTATCAGAGG-TTGCCACAAAGACT
1 TTCCTTTAT-AGAGGTTTACCATAAAGGCT
* * *
62716079 TTCCTTT-CAGAGGCTCACCATAAAGGCT
1 TTCCTTTATAGAGGTTTACCATAAAGGCT
* * *
62716107 TTTCTTTATAGAGGTTTGCCACAAAGGCT
1 TTCCTTTATAGAGGTTTACCATAAAGGCT
* * *
62716136 CTCCTTTATAGAGGTTTTCCATAAAGCCT
1 TTCCTTTATAGAGGTTTACCATAAAGGCT
62716165 TTCCTTT-TAGA
1 TTCCTTTATAGA
62716176 TACGCCACAA
Statistics
Matches: 78, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
27 5 0.06
28 20 0.26
29 53 0.68
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (29 bp):
TTCCTTTATAGAGGTTTACCATAAAGGCT
Found at i:62728059 original size:16 final size:18
Alignment explanation
Indices: 62728033--62728065 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
62728023 TTTAATTAAC
62728033 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
62728050 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
62728066 GTCAATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:62730771 original size:35 final size:35
Alignment explanation
Indices: 62730702--62730768 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
62730692 TAACAATTAG
* *
62730702 TTGAAGTTCAAAAAAAGGTCCTCATCTTCAAAATT
1 TTGAAGTTCAAAAAAAGGTCCTCACCTTAAAAATT
* *
62730737 TTGAGGTT-AAAAAAAGGTCTTCACCTTAAAAA
1 TTGAAGTTCAAAAAAAGGTCCTCACCTTAAAAA
62730769 ATTCTCAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 21 0.75
35 7 0.25
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (35 bp):
TTGAAGTTCAAAAAAAGGTCCTCACCTTAAAAATT
Found at i:62730915 original size:3 final size:3
Alignment explanation
Indices: 62730907--62730938 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
62730897 TGAATGGATT
*
62730907 TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
62730939 AATTTGGGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:62743726 original size:5 final size:5
Alignment explanation
Indices: 62743716--62743740 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
62743706 AGAATCAAAT
62743716 AGAGA AGAGA AGAGA AGAGA AGAGA
1 AGAGA AGAGA AGAGA AGAGA AGAGA
62743741 GAGTAGCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (5 bp):
AGAGA
Found at i:62744321 original size:11 final size:11
Alignment explanation
Indices: 62744305--62744340 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
62744295 TATTATAATT
62744305 TTTTCCTACCC
1 TTTTCCTACCC
62744316 TTTTCCTACCC
1 TTTTCCTACCC
62744327 TTTTCCTACCC
1 TTTTCCTACCC
62744338 TTT
1 TTT
62744341 CTCAGACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.08, C:0.42, G:0.00, T:0.50
Consensus pattern (11 bp):
TTTTCCTACCC
Found at i:62754851 original size:2 final size:2
Alignment explanation
Indices: 62754844--62754879 Score: 54
Period size: 2 Copynumber: 17.5 Consensus size: 2
62754834 TCAATGTCAC
*
62754844 AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT A
62754880 CAATTCACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62756889 original size:122 final size:123
Alignment explanation
Indices: 62756658--62756903 Score: 370
Period size: 122 Copynumber: 2.0 Consensus size: 123
62756648 CCGTACTACT
* *
62756658 TGTATTAACTATACCATTTTTCTTATCTTGGTACTTAATTGTTTTTTTTTTTGTCACAAGTGATA
1 TGTATTAACTATACCATTTTTCTCATCTTGGTACTTAATTG----TTTTTTTGTCACAAGTAATA
** *
62756723 CCCTTTTTGCTTTAGTTAGTACTTCCGTTAGTCAAACAATTAAATCTATTTTAAAAAAAATA
62 CCCTTTTTGCCCTAGTTAGTACCTCCGTTAGTCAAACAATTAAATCTATTTTAAAAAAAATA
*
62756785 TGTATTAACTATACCATTTTTCTCATCTTGGTACTTAATTG-TTTTTTGTCACAAGTAATACCTT
1 TGTATTAACTATACCATTTTTCTCATCTTGGTACTTAATTGTTTTTTTGTCACAAGTAATACCCT
*
62756849 TTTTGCCCTAGTT-GTTACCTCTGTTAGTCAAACAATTAAATCTATTTTAAAAAAA
66 TTTTGCCCTAGTTAG-TACCTCCGTTAGTCAAACAATTAAATCTATTTTAAAAAAA
62756904 GATAAATTAT
Statistics
Matches: 111, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
121 1 0.01
122 70 0.63
127 40 0.36
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.46
Consensus pattern (123 bp):
TGTATTAACTATACCATTTTTCTCATCTTGGTACTTAATTGTTTTTTTGTCACAAGTAATACCCT
TTTTGCCCTAGTTAGTACCTCCGTTAGTCAAACAATTAAATCTATTTTAAAAAAAATA
Found at i:62757336 original size:18 final size:20
Alignment explanation
Indices: 62757300--62757341 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
62757290 ATTTATTTAT
*
62757300 TAAATAATACTTTTAT-AAA
1 TAAAAAATACTTTTATAAAA
*
62757319 TAAAAAATA-TTTTTTAAAA
1 TAAAAAATACTTTTATAAAA
62757338 TAAA
1 TAAA
62757342 TTCGCACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAAAAATACTTTTATAAAA
Found at i:62760872 original size:31 final size:31
Alignment explanation
Indices: 62760834--62760933 Score: 146
Period size: 31 Copynumber: 3.0 Consensus size: 31
62760824 TTAATTTTAC
62760834 AATATTAAAATTAATCATAGTATATGTACAT
1 AATATTAAAATTAATCATAGTATATGTACAT
62760865 AATATTAAAATTAAAATTAATCATAGTATATGTACAT
1 -A-A-T---ATTAAAATTAATCATAGTATATGTACAT
62760902 AATATTAAAATTAATCATAGTATATGTACAT
1 AATATTAAAATTAATCATAGTATATGTACAT
62760933 A
1 A
62760934 CTTTATGCAC
Statistics
Matches: 63, Mismatches: 0, Indels: 11
0.85 0.00 0.15
Matches are distributed among these distances:
31 29 0.46
32 1 0.02
33 1 0.02
34 2 0.03
35 1 0.02
36 1 0.02
37 28 0.44
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (31 bp):
AATATTAAAATTAATCATAGTATATGTACAT
Found at i:62760878 original size:37 final size:37
Alignment explanation
Indices: 62760837--62760915 Score: 158
Period size: 37 Copynumber: 2.1 Consensus size: 37
62760827 ATTTTACAAT
62760837 ATTAAAATTAATCATAGTATATGTACATAATATTAAA
1 ATTAAAATTAATCATAGTATATGTACATAATATTAAA
62760874 ATTAAAATTAATCATAGTATATGTACATAATATTAAA
1 ATTAAAATTAATCATAGTATATGTACATAATATTAAA
62760911 ATTAA
1 ATTAA
62760916 TCATAGTATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (37 bp):
ATTAAAATTAATCATAGTATATGTACATAATATTAAA
Found at i:62761065 original size:23 final size:22
Alignment explanation
Indices: 62761018--62761066 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
62761008 GCCTTTTTGA
*
62761018 ATTAAATTGATTAGGATTTTAG
1 ATTAAATTGATTAGGAGTTTAG
* *
62761040 ATTAATTTGATTAAGGGGTTTAG
1 ATTAAATTGATT-AGGAGTTTAG
62761063 ATTA
1 ATTA
62761067 GGATTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (22 bp):
ATTAAATTGATTAGGAGTTTAG
Found at i:62761267 original size:10 final size:11
Alignment explanation
Indices: 62761240--62761266 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
62761230 TCCTAGCAGC
62761240 AAAAAAGAAAA
1 AAAAAAGAAAA
62761251 AAAAAAGAAAA
1 AAAAAAGAAAA
62761262 AAAAA
1 AAAAA
62761267 GCTATTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:62761738 original size:43 final size:43
Alignment explanation
Indices: 62761680--62761803 Score: 146
Period size: 43 Copynumber: 2.9 Consensus size: 43
62761670 ACTTGAAAAA
* * *
62761680 TAAAAAAACAGTTTAAGTACTACTTGTG-ACAA-AAAACTTGAAG
1 TAAAAAAAAAGTTTAAATACCA-TTGTGTA-AATAAAACTTGAAG
* *
62761723 TAAAAAAAAAGTTTAAATACCATTTTGTAAATTAAACTTGAAG
1 TAAAAAAAAAGTTTAAATACCATTGTGTAAATAAAACTTGAAG
* *
62761766 TAAAAAAAAAGTTTAAATA-CATTTTGTAAATTAAACTT
1 TAAAAAAAAAGTTTAAATACCATTGTGTAAATAAAACTT
62761804 TTATTTTATT
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
42 25 0.34
43 49 0.66
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (43 bp):
TAAAAAAAAAGTTTAAATACCATTGTGTAAATAAAACTTGAAG
Found at i:62761789 original size:42 final size:43
Alignment explanation
Indices: 62761713--62761803 Score: 175
Period size: 43 Copynumber: 2.1 Consensus size: 43
62761703 TTGTGACAAA
62761713 AAACTTGAAGTAAAAAAAAAGTTTAAATACCATTTTGTAAATT
1 AAACTTGAAGTAAAAAAAAAGTTTAAATACCATTTTGTAAATT
62761756 AAACTTGAAGTAAAAAAAAAGTTTAAATA-CATTTTGTAAATT
1 AAACTTGAAGTAAAAAAAAAGTTTAAATACCATTTTGTAAATT
62761798 AAACTT
1 AAACTT
62761804 TTATTTTATT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 19 0.40
43 29 0.60
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (43 bp):
AAACTTGAAGTAAAAAAAAAGTTTAAATACCATTTTGTAAATT
Found at i:62762297 original size:58 final size:58
Alignment explanation
Indices: 62762189--62762306 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
62762179 AAAATTCAAA
* *
62762189 ATATAATTGAATGTAGAAATTTAAACATGATTTATATATAACCAAGCTTAATCTCTAG
1 ATATAATTGAATGTAGAAATTTAAACATGATTTATATATAACCAAACTTAAACTCTAG
62762247 ATATAATTGAATGTAGAAATTTAAACATGATTTATATATAACCAAACTTAAACTCTAG
1 ATATAATTGAATGTAGAAATTTAAACATGATTTATATATAACCAAACTTAAACTCTAG
62762305 AT
1 AT
62762307 TAAAAAGTCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (58 bp):
ATATAATTGAATGTAGAAATTTAAACATGATTTATATATAACCAAACTTAAACTCTAG
Found at i:62766294 original size:29 final size:29
Alignment explanation
Indices: 62766261--62766392 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
62766251 GTGACGAGAT
62766261 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
62766290 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
62766319 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
62766348 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
62766377 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
62766393 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:62774194 original size:29 final size:29
Alignment explanation
Indices: 62774161--62774292 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
62774151 GTGACGAGAT
62774161 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
62774190 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
62774219 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
62774248 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
62774277 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
62774293 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:62777809 original size:30 final size:30
Alignment explanation
Indices: 62777773--62777903 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
62777763 GACAAGATTG
* * * * *
62777773 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
62777803 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
62777831 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62777861 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
62777890 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62777904 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:62777864 original size:58 final size:58
Alignment explanation
Indices: 62777773--62777903 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
62777763 GACAAGATTG
* * * * * *
62777773 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
62777831 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
62777890 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62777904 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:62781521 original size:29 final size:29
Alignment explanation
Indices: 62781487--62781589 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
62781477 TAATCAGCCG
** *
62781487 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
62781516 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
62781545 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
62781574 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
62781590 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:62786681 original size:40 final size:40
Alignment explanation
Indices: 62786573--62786742 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
62786563 CGGGATTTAA
* * * * *
62786573 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
62786613 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62786653 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62786693 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62786733 CCGGATATAT
1 CCGGATATAT
62786743 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:62794774 original size:40 final size:40
Alignment explanation
Indices: 62794666--62794835 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
62794656 CGGGATTTAA
* * * * *
62794666 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
62794706 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62794746 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62794786 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62794826 CCGGATATAT
1 CCGGATATAT
62794836 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:62800831 original size:29 final size:29
Alignment explanation
Indices: 62800797--62800899 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
62800787 TAATCAGCCG
** *
62800797 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
62800826 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
62800855 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
62800884 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
62800900 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:62812073 original size:17 final size:18
Alignment explanation
Indices: 62812041--62812077 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
62812031 CGTACATGAG
*
62812041 AGAAACAAAAACAAAGAA
1 AGAAACAAAAAAAAAGAA
62812059 AGAAA-AAAAAAAAAGAA
1 AGAAACAAAAAAAAAGAA
62812076 AG
1 AG
62812078 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAACAAAAAAAAAGAA
Found at i:62812085 original size:17 final size:18
Alignment explanation
Indices: 62812041--62812077 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
62812031 CGTACATGAG
*
62812041 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAACAAAGAA
62812059 AGAAAAAAAAA-AAAGAA
1 AGAAAAAAAAACAAAGAA
62812076 AG
1 AG
62812078 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAACAAAGAA
Found at i:62813442 original size:40 final size:40
Alignment explanation
Indices: 62813354--62813483 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
62813344 ATGCTGGAAA
* * *
62813354 TTATATCCGGGTTAAGACCCAAAGGCAATT-GTGCTAGT-G
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG
* *
62813393 ACTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 -TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * * *
62813434 TTCTATCCGGGCTAAGACCCGAGGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
62813474 TTATATCCGG
1 TTATATCCGG
62813484 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
Found at i:62827496 original size:27 final size:27
Alignment explanation
Indices: 62827458--62827511 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
62827448 ACTTCCCAAT
*
62827458 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTAGTATGCCCCTATG
*
62827485 TGATAAAATGACTGGTATGCCCCTATG
1 TGATAAAATGACTAGTATGCCCCTATG
62827512 AGATGAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (27 bp):
TGATAAAATGACTAGTATGCCCCTATG
Found at i:62829207 original size:13 final size:13
Alignment explanation
Indices: 62829189--62829214 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62829179 TTGAATCCGT
62829189 ACCAAAACAATCA
1 ACCAAAACAATCA
62829202 ACCAAAACAATCA
1 ACCAAAACAATCA
62829215 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:62830139 original size:44 final size:44
Alignment explanation
Indices: 62830050--62830178 Score: 192
Period size: 43 Copynumber: 3.0 Consensus size: 44
62830040 CTTGTACAAC
62830050 GCCAACGTCCCAGACGTGGTCTTACATGT-AATCACATATCGAT
1 GCCAACGTCCCAGACGTGGTCTTACATGTAAATCACATATCGAT
* * * *
62830093 GCC-ACTGTCCCAAACATGGTCTTACACGTAAATCACAAATCGAT
1 GCCAAC-GTCCCAGACGTGGTCTTACATGTAAATCACATATCGAT
62830137 GCCAACGTCCCAGACGTGGTCTTACATG-AAATCACATATCGA
1 GCCAACGTCCCAGACGTGGTCTTACATGTAAATCACATATCGA
62830179 AATCCTATGT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.03
43 36 0.48
44 35 0.47
45 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (44 bp):
GCCAACGTCCCAGACGTGGTCTTACATGTAAATCACATATCGAT
Found at i:62833597 original size:40 final size:40
Alignment explanation
Indices: 62833550--62833625 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
62833540 CTAAAAAAAA
62833550 TGGCACTTAGTGTGCGGTTCGAAATAGCTTCTGCTAAATG
1 TGGCACTTAGTGTGCGGTTCGAAATAGCTTCTGCTAAATG
* * *
62833590 TGGCACTTGGTGTGCGGTTGGAGATAGCTTCTGCTA
1 TGGCACTTAGTGTGCGGTTCGAAATAGCTTCTGCTA
62833626 TATATGTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.18, C:0.17, G:0.32, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGGTTCGAAATAGCTTCTGCTAAATG
Found at i:62838214 original size:31 final size:31
Alignment explanation
Indices: 62838171--62838285 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
62838161 TTAGTCTTGA
*
62838171 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
62838201 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
62838232 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
62838263 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
62838286 ACTGTAAACG
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
30 5 0.06
31 77 0.94
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:62838357 original size:42 final size:42
Alignment explanation
Indices: 62838310--62838400 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
62838300 GGCCCATAGG
* ** * *
62838310 CCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAA
1 CCCATTTCAATATCACATGAAATACCAAAGAATGTATGCAAA
* *
62838352 CCCATTTCAATATCATATGAAATACCAAAGAATGTATGCAAG
1 CCCATTTCAATATCACATGAAATACCAAAGAATGTATGCAAA
62838394 CCCATTT
1 CCCATTT
62838401 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (42 bp):
CCCATTTCAATATCACATGAAATACCAAAGAATGTATGCAAA
Found at i:62838649 original size:26 final size:26
Alignment explanation
Indices: 62838533--62838667 Score: 172
Period size: 25 Copynumber: 5.3 Consensus size: 26
62838523 TTGGAGGCCT
62838533 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
62838557 AGCTCTTTTCAGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
62838582 AGCCCTTTTCAATAAATTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
62838608 AGCCC-TTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
62838633 AACCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
62838659 AGCCCTTTT
1 AGCCCTTTT
62838668 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 53 0.56
26 32 0.34
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:62838655 original size:51 final size:50
Alignment explanation
Indices: 62838538--62838666 Score: 183
Period size: 51 Copynumber: 2.6 Consensus size: 50
62838528 GGCCTAGCCT
* *
62838538 CTTTT-AAT-AACTGGGGCA-AAGCTCTTTTCAGTAAACTGGGGCAAAGCC
1 CTTTTCAATAAACTGGGGCATAAGC-CCTTTCAGTAAACTGGGGCAAAACC
* *
62838586 CTTTTCAATAAATTGGGGCATAAGCCCTTTCGGTAAACTGGGGCATAAACC
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTCAGTAAACTGGGGCA-AAACC
62838637 CTTTTCAATAAACTGGGGCATAAGCCCTTT
1 CTTTTCAATAAACTGGGGCATAAGCCCTTT
62838667 TGCACTTCCT
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
48 5 0.07
49 3 0.04
50 27 0.38
51 37 0.51
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (50 bp):
CTTTTCAATAAACTGGGGCATAAGCCCTTTCAGTAAACTGGGGCAAAACC
Found at i:62838727 original size:20 final size:20
Alignment explanation
Indices: 62838702--62838782 Score: 128
Period size: 20 Copynumber: 4.0 Consensus size: 20
62838692 CCCAACCCAA
62838702 TGCATTTCATACATATCATG
1 TGCATTTCATACATATCATG
62838722 TGCATTTCATACATATCATG
1 TGCATTTCATACATATCATG
*
62838742 TGCATTTTATACATATCATG
1 TGCATTTCATACATATCATG
*
62838762 TGCATATCATATCA-ATCATG
1 TGCATTTCATA-CATATCATG
62838782 T
1 T
62838783 ATATCATATC
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
20 55 0.96
21 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.41
Consensus pattern (20 bp):
TGCATTTCATACATATCATG
Found at i:62839613 original size:27 final size:27
Alignment explanation
Indices: 62839583--62839736 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
62839573 TTTCATCCTA
* * *
62839583 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
62839610 CAAGGGTATTTCT-GTAATTTTGCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
62839637 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
62839664 TGAGGGTATTTTCGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
62839690 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
62839717 CTAGGGGTATTATGGTAATT
1 C-AAGGGTATTTTGGTAATT
62839737 CTATCTTACA
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 107 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:62839750 original size:54 final size:53
Alignment explanation
Indices: 62839586--62839778 Score: 169
Period size: 54 Copynumber: 3.6 Consensus size: 53
62839576 CATCCTACAA
* * * * *
62839586 GGGTGTTTTGGTAAATCTACAAATCA-AGGGTATT-TCTGTAATTTTGCAAATCAG
1 GGGTATTTTGGTAATTTTACAAAT-AGAGGGTATTATC-GTAATTCTACAAA-CAG
* * *
62839640 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTCGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAATAGAGGGTATTATCGTAATTCTACAAAC-AG
* **
62839694 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTATGGTAATTCTATCTTACAG
1 GGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTATCGTAATTCTA-CAAACAG
** * *
62839748 GGGTATTTCAGTAATTTCAC-AATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATAGAGGGTA
62839779 AAATGGTAAT
Statistics
Matches: 118, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
52 2 0.02
53 8 0.07
54 101 0.86
55 7 0.06
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATAGAGGGTATTATCGTAATTCTACAAACAG
Found at i:62839776 original size:27 final size:26
Alignment explanation
Indices: 62839607--62839776 Score: 82
Period size: 27 Copynumber: 6.3 Consensus size: 26
62839597 TAAATCTACA
* *
62839607 AATCAAGGGTATTTCTGTAATTTTGCA-
1 AATCAGGGGTATTTCGGTAA-TTT-CAC
* *
62839634 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
* *
62839660 AAAT-TGAGGGTATTTTC-GTAATTTTAC
1 -AATCAG-GGGTA-TTTCGGTAATTTCAC
* * *
62839687 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTCGGTAATTTCAC
*
62839714 AAACTAGGGGTATTAT-GGTAA-TTCTATC
1 AATC-AGGGGTATT-TCGGTAATTTC-A-C
* *
62839742 -TTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTCGGTAATTTCAC
62839768 AATCGAGGG
1 AATC-AGGG
62839777 TAAAATGGTA
Statistics
Matches: 114, Mismatches: 14, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.01
26 14 0.12
27 89 0.78
28 10 0.09
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
AATCAGGGGTATTTCGGTAATTTCAC
Found at i:62839806 original size:27 final size:27
Alignment explanation
Indices: 62839768--62839967 Score: 249
Period size: 27 Copynumber: 7.4 Consensus size: 27
62839758 GTAATTTCAC
*
62839768 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
62839795 AA-CTAAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
*
62839822 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
62839849 AATCGAGGATAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
62839876 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * * *
62839903 AATCAAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
62839930 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
62839957 AATCGAGGGTA
1 AATCGAGGGTA
62839968 TTTCAGTAAT
Statistics
Matches: 148, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 146 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:62839885 original size:81 final size:81
Alignment explanation
Indices: 62839768--62839967 Score: 294
Period size: 81 Copynumber: 2.5 Consensus size: 81
62839758 GTAATTTCAC
* * * * *
62839768 AATCGAGGGTAAAATGGTAATTTTGTAAA-CTAAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATAGTAATTTTGTAAATCAAGGGT
* *
62839832 AAAACGGTAATTCTGTA
65 AAAACGATAATTCTATA
* *
62839849 AATCGAGGATAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTA
62839914 AAACGATAATTCTATA
66 AAACGATAATTCTATA
*
62839930 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
62839968 TTTCAGTAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 106 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTA
AAACGATAATTCTATA
Found at i:62841381 original size:37 final size:37
Alignment explanation
Indices: 62841326--62841428 Score: 165
Period size: 37 Copynumber: 2.8 Consensus size: 37
62841316 ATGTGGTAAG
*
62841326 TGTAAGACCATAGCTGGGCTATGGCATCGTGATGACA
1 TGTAAGACCATAGTTGGGCTATGGCATCGTGATGACA
62841363 TGTAAGACCATAGTTGGGCTATGGCATCGTGATGACA
1 TGTAAGACCATAGTTGGGCTATGGCATCGTGATGACA
62841400 TGTAAGACCATA-TCTGGGAC-ATGGCATCG
1 TGTAAGACCATAGT-TGGG-CTATGGCATCG
62841429 GTATGAGATC
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
36 1 0.02
37 61 0.97
38 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (37 bp):
TGTAAGACCATAGTTGGGCTATGGCATCGTGATGACA
Found at i:62841466 original size:42 final size:42
Alignment explanation
Indices: 62841400--62841738 Score: 233
Period size: 42 Copynumber: 7.7 Consensus size: 42
62841390 CGTGATGACA
* *
62841400 TGTAAGACCATATCTGGGACATGGCATCGGTATGAGATCCTG
1 TGTAAGACCATATCTGGGATATGGCATCGGTATGAGATCTTG
*
62841442 TGTAAGACCATATCTAGGATATGGCATCAGCATCGATATGAGATCTTG
1 TGTAAGACCATATCTGGGATATGGCATC-G----G-TATGAGATCTTG
*
62841490 TGTAAGACCATATCTGGGATATGGCATCAACATCGATATGAGATCTTG
1 TGTAAGACCATATCTGGGATATGG------CATCGGTATGAGATCTTG
* *
62841538 TGTAAGACCATATCTGGGAATGACATCGGCATCGATATGAGAT-TACG
1 TGTAAGACCATATCTGGG-AT---AT-GGCATCGGTATGAGATCT-TG
* *
62841585 TGTAAGACTATATCTGGGATATGGCTTCGGTATGAGAT-TTCG
1 TGTAAGACCATATCTGGGATATGGCATCGGTATGAGATCTT-G
* * * * * *
62841627 TGTAAGACCGTGTTTGGGATGCT-GCATCGATATGTGAT-TTCG
1 TGTAAGACCATATCTGGGAT-ATGGCATCGGTATGAGATCTT-G
* * * * * *
62841669 TATAAGACCATGTCTGGGACATGGCATCGATGTGAGA-CTTTA
1 TGTAAGACCATATCTGGGATATGGCATCGGTATGAGATC-TTG
62841711 TGTAAGACCATAGT-T-GGACTATGGCATC
1 TGTAAGACCATA-TCTGGGA-TATGGCATC
62841739 AAGTAAACGA
Statistics
Matches: 243, Mismatches: 29, Indels: 50
0.75 0.09 0.16
Matches are distributed among these distances:
41 4 0.02
42 121 0.50
43 7 0.03
46 3 0.01
47 33 0.14
48 64 0.26
49 2 0.01
52 2 0.01
53 3 0.01
54 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGGTATGAGATCTTG
Found at i:62841494 original size:48 final size:48
Alignment explanation
Indices: 62841400--62841609 Score: 283
Period size: 48 Copynumber: 4.5 Consensus size: 48
62841390 CGTGATGACA
* *
62841400 TGTAAGACCATATCTGGGACATGGCATC-G----G-TATGAGATCCTG
1 TGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGAGATCTTG
*
62841442 TGTAAGACCATATCTAGGATATGGCATCAGCATCGATATGAGATCTTG
1 TGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGAGATCTTG
*
62841490 TGTAAGACCATATCTGGGATATGGCATCAACATCGATATGAGATCTTG
1 TGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGAGATCTTG
* * *
62841538 TGTAAGACCATATCTGGGA-ATGACATCGGCATCGATATGAGAT-TACG
1 TGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGAGATCT-TG
*
62841585 TGTAAGACTATATCTGGGATATGGC
1 TGTAAGACCATATCTGGGATATGGC
62841610 TTCGGTATGA
Statistics
Matches: 149, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
42 26 0.17
43 1 0.01
46 1 0.01
47 41 0.28
48 80 0.54
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGAGATCTTG
Found at i:62841600 original size:95 final size:96
Alignment explanation
Indices: 62841424--62841609 Score: 286
Period size: 95 Copynumber: 1.9 Consensus size: 96
62841414 TGGGACATGG
* * *
62841424 CATCGGTATGAGATCCTGTGTAAGACCATATCTAGGATATGGCATCAGCATCGATATGAGATCTT
1 CATCGATATGAGATCCTGTGTAAGACCATATCTAGGATATGACATCAGCATCGATATGAGATCTC
62841489 GTGTAAGACCATATCTGGGATATGGCATCAA
66 GTGTAAGACCATATCTGGGATATGGCATCAA
* * *
62841520 CATCGATATGAGATCTTGTGTAAGACCATATCTGGGA-ATGACATCGGCATCGATATGAGAT-TA
1 CATCGATATGAGATCCTGTGTAAGACCATATCTAGGATATGACATCAGCATCGATATGAGATCT-
*
62841583 CGTGTAAGACTATATCTGGGATATGGC
65 CGTGTAAGACCATATCTGGGATATGGC
62841610 TTCGGTATGA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 1 0.01
95 47 0.57
96 34 0.41
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (96 bp):
CATCGATATGAGATCCTGTGTAAGACCATATCTAGGATATGACATCAGCATCGATATGAGATCTC
GTGTAAGACCATATCTGGGATATGGCATCAA
Found at i:62845393 original size:28 final size:28
Alignment explanation
Indices: 62845362--62845418 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
62845352 ACTGTGCAAA
* * *
62845362 ATATTAAGAATGGCACTTGGTGTGCGAG
1 ATATTAAGAATGACACTTAGTGTACGAG
* *
62845390 ATATTGAGTATGACACTTAGTGTACGAG
1 ATATTAAGAATGACACTTAGTGTACGAG
62845418 A
1 A
62845419 CATCGAAGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATTAAGAATGACACTTAGTGTACGAG
Found at i:62847783 original size:26 final size:26
Alignment explanation
Indices: 62847745--62847807 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 26
62847735 GTAAATACGT
*
62847745 TTGGCACAAAGCCATCCATTTTTATG
1 TTGGCACAGAGCCATCCATTTTTATG
62847771 TTGGCACAGAG----CCATTTTTATG
1 TTGGCACAGAGCCATCCATTTTTATG
62847793 TTGGCACAGAGCCAT
1 TTGGCACAGAGCCAT
62847808 AATCAGATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
22 22 0.69
26 10 0.31
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (26 bp):
TTGGCACAGAGCCATCCATTTTTATG
Found at i:62847788 original size:22 final size:22
Alignment explanation
Indices: 62847760--62847807 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
62847750 ACAAAGCCAT
62847760 CCATTTTTATGTTGGCACAGAG
1 CCATTTTTATGTTGGCACAGAG
62847782 CCATTTTTATGTTGGCACAGAG
1 CCATTTTTATGTTGGCACAGAG
62847804 CCAT
1 CCAT
62847808 AATCAGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (22 bp):
CCATTTTTATGTTGGCACAGAG
Found at i:62848192 original size:26 final size:26
Alignment explanation
Indices: 62848163--62848264 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 26
62848153 CAAAACAGTC
62848163 ATTTTAC-CTTAAGAGGTATTTCAATA
1 ATTTTACACTTAAG-GGTATTTCAATA
* ***
62848189 ATTTTACACTACAAGGGTATTTCAGCC
1 ATTTTACACT-TAAGGGTATTTCAATA
* * *
62848216 ATTTTACAAGTCAGGGGTATTTCAATA
1 ATTTTAC-ACTTAAGGGTATTTCAATA
* *
62848243 ATTTTACAAGTCAAGGGTATTT
1 ATTTTAC-ACTTAAGGGTATTT
62848265 TGGTAATTTC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.11
27 51 0.81
28 5 0.08
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (26 bp):
ATTTTACACTTAAGGGTATTTCAATA
Found at i:62848205 original size:53 final size:54
Alignment explanation
Indices: 62848146--62848250 Score: 122
Period size: 54 Copynumber: 2.0 Consensus size: 54
62848136 TCATTTACCC
* **
62848146 ACAAGGGCAAAACAGTCATTTTAC-CTTAAGAGGTATTTCAATAATTTTACACT
1 ACAAGGGCAAAACAGCCATTTTACAAGTAAGAGGTATTTCAATAATTTTACACT
* *** * *
62848199 ACAAGGGTATTTCAGCCATTTTACAAGTCAGGGGTATTTCAATAATTTTACA
1 ACAAGGGCAAAACAGCCATTTTACAAGTAAGAGGTATTTCAATAATTTTACA
62848251 AGTCAAGGGT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
53 19 0.45
54 23 0.55
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Consensus pattern (54 bp):
ACAAGGGCAAAACAGCCATTTTACAAGTAAGAGGTATTTCAATAATTTTACACT
Found at i:62848210 original size:27 final size:27
Alignment explanation
Indices: 62848177--62848368 Score: 145
Period size: 27 Copynumber: 7.1 Consensus size: 27
62848167 TACCTTAAGA
*
62848177 GGTATTTCAATAATTTTAC-ACTACAAG
1 GGTATTTCAATAATTTTACAAGT-CAAG
*** *
62848204 GGTATTTCAGCCATTTTACAAGTCAGG
1 GGTATTTCAATAATTTTACAAGTCAAG
62848231 GGTATTTCAATAATTTTACAAGTCAAG
1 GGTATTTCAATAATTTTACAAGTCAAG
*** * * *
62848258 GGTATTTTGGTAATTTCACAAATCGAG
1 GGTATTTCAATAATTTTACAAGTCAAG
* * * * *
62848285 GGTATTTCAGTAATTTCACAAATTAGG
1 GGTATTTCAATAATTTTACAAGTCAAG
* * * *
62848312 GGTGTTTCAGTAATTTTACAA-CCAGAA
1 GGTATTTCAATAATTTTACAAGTCA-AG
* * *
62848339 GTTATTTCAGTAATTTTACAAGTCAGG
1 GGTATTTCAATAATTTTACAAGTCAAG
62848366 GGT
1 GGT
62848369 CTTAACGACC
Statistics
Matches: 130, Mismatches: 32, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
26 1 0.01
27 125 0.96
28 4 0.03
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTTCAATAATTTTACAAGTCAAG
Found at i:62848288 original size:54 final size:54
Alignment explanation
Indices: 62848177--62848368 Score: 174
Period size: 54 Copynumber: 3.6 Consensus size: 54
62848167 TACCTTAAGA
* ** *
62848177 GGTATTTCAATAATTTTAC-ACTACAAGGGTATTTCAGCCATTTTACAAGTC-AGG
1 GGTATTTCAATAATTTTACAAGT-CAAGGGTATTTCAGTAATTTTACAAATCGA-G
** *
62848231 GGTATTTCAATAATTTTACAAGTCAAGGGTATTTTGGTAATTTCACAAATCGAG
1 GGTATTTCAATAATTTTACAAGTCAAGGGTATTTCAGTAATTTTACAAATCGAG
* * * * * * * *
62848285 GGTATTTCAGTAATTTCACAAATTAGGGGTGTTTCAGTAATTTTAC-AACCAGAA
1 GGTATTTCAATAATTTTACAAGTCAAGGGTATTTCAGTAATTTTACAAATC-GAG
* * *
62848339 GTTATTTCAGTAATTTTACAAGTCAGGGGT
1 GGTATTTCAATAATTTTACAAGTCAAGGGT
62848369 CTTAACGACC
Statistics
Matches: 113, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
53 3 0.03
54 107 0.95
55 3 0.03
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTATTTCAATAATTTTACAAGTCAAGGGTATTTCAGTAATTTTACAAATCGAG
Found at i:62848345 original size:81 final size:81
Alignment explanation
Indices: 62848176--62848359 Score: 183
Period size: 81 Copynumber: 2.3 Consensus size: 81
62848166 TTACCTTAAG
* * * * * * *
62848176 AGGTATTTCAATAATTTTAC-ACTACAAGGGTATTTCAGCCATTTTACAAGTCAGGGGTATTTCA
1 AGGTATTTCAGTAATTTCACAAAT-CGAGGGTATTTCAGCAATTTCACAAATCAGGGGTATTTCA
*
62848240 ATAATTTTACAAGTCAA
65 ATAATTTTACAAGCCAA
* ** * * * *
62848257 GGGTATTTTGGTAATTTCACAAATCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTGTTTCAG
1 AGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGCAATTTCACAAATCAGGGGTATTTCAA
62848322 TAATTTTACAA-CCAGA
66 TAATTTTACAAGCCA-A
* *
62848338 AGTTATTTCAGTAATTTTACAA
1 AGGTATTTCAGTAATTTCACAA
62848360 GTCAGGGGTC
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
80 2 0.02
81 77 0.95
82 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (81 bp):
AGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAGCAATTTCACAAATCAGGGGTATTTCAA
TAATTTTACAAGCCAA
Found at i:62858079 original size:40 final size:39
Alignment explanation
Indices: 62858034--62858163 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
62858024 CGGAATACAA
62858034 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
62858074 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
62858114 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
62858154 CCGGATATAA
1 CCGGATATAA
62858164 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:62866142 original size:40 final size:39
Alignment explanation
Indices: 62866097--62866226 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
62866087 CGGAATACAA
62866097 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
62866137 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
62866177 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
62866217 CCGGATATAA
1 CCGGATATAA
62866227 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:62872638 original size:27 final size:27
Alignment explanation
Indices: 62872608--62872805 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
62872598 TACTGAAATG
** *
62872608 CCCTCGATTTGTAAAATTACAATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * ** *
62872635 CCCTCGATTTATAGAATTACTGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
*
62872662 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
62872689 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
62872716 CCCTTGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
62872743 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
62872770 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
*
62872797 CCCTTGATT
1 CCCTCGATT
62872806 GTAAATTACT
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:62872725 original size:81 final size:81
Alignment explanation
Indices: 62872608--62872805 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
62872598 TACTGAAATG
* * * * **
62872608 CCCTCGATTTGTAAAATTACAATTTTACCCTCGATTTATAGAATTACTGTTTCACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCATTTCACCCTCGATTTA
*
62872673 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* *
62872689 CCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCATTTCACCCTCGATTTA
62872754 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
62872770 CCCTC-AGTTTACAAAATTATCGTTTTACCCTTGATT
1 CCCTCGA-TTTATAAAATTACCATTTTACCCTTGATT
62872806 GTAAATTACT
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 102 0.99
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCATTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:62872887 original size:27 final size:27
Alignment explanation
Indices: 62872857--62872930 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
62872847 TACCTTTAGC
**
62872857 TTGTAAAATTACCAAAATACCAAT-GGT
1 TTGTAAAATTACCAAAATACC-ATCAAT
* * *
62872884 TTGTGAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCATCAAT
62872911 TTG-AAAATTACCAAAATACC
1 TTGTAAAATTACCAAAATACC
62872931 TTTGATTTAC
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 16 0.41
27 23 0.59
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.28
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCATCAAT
Found at i:62872927 original size:26 final size:26
Alignment explanation
Indices: 62872889--62872956 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
62872879 ATGGTTTGTG
*
62872889 AAATTACCGAAATACCCTCAATTTGA-
1 AAATTACCAAAATACCCTCAATTT-AC
* **
62872915 AAATTACCAAAATACCTTTGATTTAC
1 AAATTACCAAAATACCCTCAATTTAC
*
62872941 AAATTACAAAAATACC
1 AAATTACCAAAATACC
62872957 TTGACTTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
25 1 0.03
26 35 0.97
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (26 bp):
AAATTACCAAAATACCCTCAATTTAC
Found at i:62872946 original size:106 final size:107
Alignment explanation
Indices: 62872836--62873033 Score: 238
Period size: 106 Copynumber: 1.9 Consensus size: 107
62872826 TGTAGGATAG
* * * * *** *
62872836 AATTACCACAATACCTTTAGCTTGT-AAAATTACCAAAATACCAATGGTTTGTGAAATTACCGAA
1 AATTACAAAAATACCTTGA-CTTGTAAAAATTACAAAAATACCAATGGTTTACAAAATTACCAAA
62872900 ATACCCTCAATTTG-AAAATTACCAAAATACCTTTGATTTACA
65 ATACCCTCAATTTGTAAAATTACCAAAATACCTTTGATTTACA
* * * *
62872942 AATTACAAAAATACCTTGACTTTTAAAAATTATAAAAATACCATTGGTTTACAAAATTACTAAAA
1 AATTACAAAAATACCTTGACTTGTAAAAATTACAAAAATACCAATGGTTTACAAAATTACCAAAA
* * *
62873007 TACCCTCAGTTTGTAGATTTACCAAAA
66 TACCCTCAATTTGTAAAATTACCAAAA
62873034 CACCCTTGTA
Statistics
Matches: 75, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
105 4 0.05
106 60 0.80
107 11 0.15
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.32
Consensus pattern (107 bp):
AATTACAAAAATACCTTGACTTGTAAAAATTACAAAAATACCAATGGTTTACAAAATTACCAAAA
TACCCTCAATTTGTAAAATTACCAAAATACCTTTGATTTACA
Found at i:62872973 original size:27 final size:26
Alignment explanation
Indices: 62872909--62873010 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 26
62872899 AATACCCTCA
* * *
62872909 ATTTGAAAATTACCAAAATACCTTTG
1 ATTTAAAAATTACAAAAATACCATTG
*
62872935 ATTTACAAATTACAAAAATACC-TTG
1 ATTTAAAAATTACAAAAATACCATTG
*
62872960 ACTTTTAAAAATTATAAAAATACCATTG
1 A--TTTAAAAATTACAAAAATACCATTG
* *
62872988 GTTTACAAAATTACTAAAATACC
1 ATTTA-AAAATTACAAAAATACC
62873011 CTCAGTTTGT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
25 4 0.06
26 23 0.36
27 34 0.53
28 3 0.05
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (26 bp):
ATTTAAAAATTACAAAAATACCATTG
Found at i:62873018 original size:27 final size:27
Alignment explanation
Indices: 62872889--62873018 Score: 79
Period size: 27 Copynumber: 4.9 Consensus size: 27
62872879 ATGGTTTGTG
* * *
62872889 AAATTACCGAAATACCCTCAATTT-GA
1 AAATTACCAAAATACCCTCAGTTTACA
**
62872915 AAATTACCAAAATA-CCTTTGATTTAC-
1 AAATTACCAAAATACCCTCAG-TTTACA
* * * *
62872941 AAATTACAAAAATACCTTGACTTTTA-A
1 AAATTACCAAAATACCCTCA-GTTTACA
** * **
62872968 AAATTATAAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTCAGTTTACA
*
62872995 AAATTACTAAAATACCCTCAGTTT
1 AAATTACCAAAATACCCTCAGTTT
62873019 GTAGATTTAC
Statistics
Matches: 78, Mismatches: 20, Indels: 11
0.72 0.18 0.10
Matches are distributed among these distances:
25 3 0.04
26 33 0.42
27 42 0.54
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAGTTTACA
Found at i:62873114 original size:27 final size:27
Alignment explanation
Indices: 62873059--62873136 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
62873049 AAATGACTAA
* * *
62873059 AATACCCCTAATA-GGTAAAAAGACTGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
*
62873086 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
62873113 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
62873137 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:62873994 original size:25 final size:23
Alignment explanation
Indices: 62873965--62874036 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
62873955 CAATTTACCG
62873965 AAAAGGGCTTTGCCCCAGTTTATT
1 AAAAGGGCTTTGCCCCAG-TTATT
*
62873989 AGAAAGGACTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATT
**
62874013 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
62874037 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 4 0.10
24 13 0.32
25 24 0.59
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATT
Found at i:62874214 original size:42 final size:42
Alignment explanation
Indices: 62874155--62874289 Score: 234
Period size: 42 Copynumber: 3.2 Consensus size: 42
62874145 TAGTCTCCCC
62874155 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
62874197 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
* * *
62874239 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTTA
1 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATA-TTG
62874282 AAATGGGC
1 AAATGGGC
62874290 CTAAGGCCAT
Statistics
Matches: 89, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
42 79 0.89
43 10 0.11
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
Found at i:62874424 original size:30 final size:31
Alignment explanation
Indices: 62874312--62874424 Score: 151
Period size: 30 Copynumber: 3.7 Consensus size: 31
62874302 CGTTTACAGT
62874312 AAAGGCTTCAGCCCAGTGATATGATTTAT-G
1 AAAGGCTTCAGCCCAGTGATATGATTTATGG
* * *
62874342 AAAAGCTTTAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGG
*
62874373 AAAGGCTTC-GGCCAGTGATATGATTTATGG
1 AAAGGCTTCAGCCCAGTGATATGATTTATGG
* *
62874403 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
62874425 TCAAGACTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
30 60 0.83
31 12 0.17
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGG
Found at i:62880687 original size:27 final size:26
Alignment explanation
Indices: 62880646--62880749 Score: 131
Period size: 26 Copynumber: 4.0 Consensus size: 26
62880636 TCGAATTTGT
*
62880646 AAAATTACCA-ATTACCCTCGATTTA-
1 AAAATTACCATTTTACCCTC-ATTTAC
*
62880671 AAAATTATCCGTTTTACCCTCAATTTAC
1 AAAATTA-CCATTTTACCCTC-ATTTAC
*
62880699 AAAATTACCATTTTACCCTCATTTAT
1 AAAATTACCATTTTACCCTCATTTAC
*
62880725 AGAATTACCATTTTACCCTCATTTA
1 AAAATTACCATTTTACCCTCATTTA
62880750 AGATTGTTAC
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
25 7 0.10
26 31 0.44
27 25 0.36
28 7 0.10
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (26 bp):
AAAATTACCATTTTACCCTCATTTAC
Found at i:62880703 original size:53 final size:52
Alignment explanation
Indices: 62880646--62880749 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 52
62880636 TCGAATTTGT
*
62880646 AAAATTACCA-ATTACCCTCGATTTA-AAAATTATCCGTTTTACCCTCAATTTAC
1 AAAATTACCATATTACCCTC-ATTTATAAAATTA-CCATTTTACCCTC-ATTTAC
* *
62880699 AAAATTACCATTTTACCCTCATTTATAGAATTACCATTTTACCCTCATTTA
1 AAAATTACCATATTACCCTCATTTATAAAATTACCATTTTACCCTCATTTA
62880750 AGATTGTTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
52 5 0.11
53 27 0.59
54 14 0.30
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (52 bp):
AAAATTACCATATTACCCTCATTTATAAAATTACCATTTTACCCTCATTTAC
Found at i:62880794 original size:19 final size:19
Alignment explanation
Indices: 62880729--62880794 Score: 53
Period size: 19 Copynumber: 3.2 Consensus size: 19
62880719 ATTTATAGAA
62880729 TTACCATTTTACCCTC-AT
1 TTACCATTTTACCCTCGAT
**
62880747 TTAAGATTGTTACCCTCGATT
1 TTACCATT-TTACCCTCGA-T
62880768 CGAATTACCATTTTACCCTCGAT
1 ----TTACCATTTTACCCTCGAT
62880791 TTAC
1 TTAC
62880795 AAAATTACCA
Statistics
Matches: 37, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
18 6 0.16
19 12 0.32
20 1 0.03
21 1 0.03
23 1 0.03
24 10 0.27
25 6 0.16
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (19 bp):
TTACCATTTTACCCTCGAT
Found at i:62882230 original size:40 final size:39
Alignment explanation
Indices: 62882185--62882314 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
62882175 CGGAATACAA
62882185 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
62882225 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
62882265 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
62882305 CCGGATATAA
1 CCGGATATAA
62882315 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:62890288 original size:40 final size:39
Alignment explanation
Indices: 62890243--62890372 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
62890233 CGGAATACAA
62890243 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
62890283 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
62890323 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
62890363 CCGGATATAA
1 CCGGATATAA
62890373 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:62896780 original size:27 final size:27
Alignment explanation
Indices: 62896750--62896947 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
62896740 TACTGAAATG
** *
62896750 CCCTCGATTTGTAAAATTACAATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * ** *
62896777 CCCTCGATTTATAGAATTACTGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
*
62896804 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
62896831 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
62896858 CCCTTGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
62896885 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
62896912 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
*
62896939 CCCTTGATT
1 CCCTCGATT
62896948 GTGAAATTAC
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:62896867 original size:81 final size:81
Alignment explanation
Indices: 62896750--62896947 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
62896740 TACTGAAATG
* * * * **
62896750 CCCTCGATTTGTAAAATTACAATTTTACCCTCGATTTATAGAATTACTGTTTCACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCATTTCACCCTCGATTTA
*
62896815 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* *
62896831 CCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCATTTCACCCTCGATTTA
62896896 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
62896912 CCCTC-AGTTTACAAAATTATCGTTTTACCCTTGATT
1 CCCTCGA-TTTATAAAATTACCATTTTACCCTTGATT
62896948 GTGAAATTAC
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 102 0.99
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTTGATTTACAGAATTACCATTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:62897028 original size:27 final size:26
Alignment explanation
Indices: 62896998--62897173 Score: 108
Period size: 27 Copynumber: 6.7 Consensus size: 26
62896988 TACCTTTAGC
* *
62896998 TTGTAAAATTACCAAAATACCAATGGT
1 TTGTAAAATTACCAAAATACC-TTGAT
* * **
62897025 TTGTGAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTACCAAAATA-CCTTGAT
62897052 TTGTAAAATTACCAAAATACC-TGAT
1 TTGTAAAATTACCAAAATACCTTGAT
**
62897077 TTACAAAATTA-CAAAATACCCTTGACT
1 TTGTAAAATTACCAAAATA-CCTTGA-T
* *
62897104 TT-TAAAAATTA-TAAAATACCATTGGT
1 TTGT-AAAATTACCAAAATACC-TTGAT
** * * *
62897130 TTACAAAATTACTAAAATACCCTCAGT
1 TTGTAAAATTACCAAAATACCTTGA-T
* *
62897157 TTGTAGATTTACCAAAA
1 TTGTAAAATTACCAAAA
62897174 CACCCTTGTA
Statistics
Matches: 116, Mismatches: 24, Indels: 18
0.73 0.15 0.11
Matches are distributed among these distances:
24 7 0.06
25 13 0.11
26 18 0.16
27 76 0.66
28 2 0.02
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCTTGAT
Found at i:62897254 original size:27 final size:27
Alignment explanation
Indices: 62897199--62897276 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
62897189 AAATGACTAA
* * *
62897199 AATACCCCTAATA-GGTAAAAAGACTGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
*
62897226 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
62897253 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
62897277 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:62898140 original size:25 final size:23
Alignment explanation
Indices: 62898111--62898182 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
62898101 CAATTTACCG
62898111 AAAAGGGCTTTGCCCCAGTTTATT
1 AAAAGGGCTTTGCCCCAG-TTATT
*
62898135 AGAAAGGACTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATT
**
62898159 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
62898183 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 4 0.10
24 13 0.32
25 24 0.59
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATT
Found at i:62898362 original size:42 final size:42
Alignment explanation
Indices: 62898303--62898436 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
62898293 TAGTCTCCCC
62898303 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
62898345 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
* * *
62898387 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTA
1 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
62898429 AAATGGGC
1 AAATGGGC
62898437 CTAAGGGCCA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
Found at i:62898498 original size:31 final size:31
Alignment explanation
Indices: 62898460--62898574 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
62898450 CGTTTACAGT
62898460 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
62898491 AAAGGCTTTAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* *
62898522 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* *
62898553 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
62898575 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:62899847 original size:34 final size:34
Alignment explanation
Indices: 62899809--62899890 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
62899799 GTATCAGTTA
* * * *
62899809 GGCCTTAGCCTATTTCAGTAACTGTAGCAGTATG
1 GGCCTGAGCCCATTTCAGTAACAGTAACAGTATG
* *
62899843 GGCCTGAGCCCGTTTTAGTAACAGTAACAGTATG
1 GGCCTGAGCCCATTTCAGTAACAGTAACAGTATG
* *
62899877 GGCCTAAGCTCATT
1 GGCCTGAGCCCATT
62899891 AACATATCAG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (34 bp):
GGCCTGAGCCCATTTCAGTAACAGTAACAGTATG
Found at i:62914918 original size:28 final size:28
Alignment explanation
Indices: 62914870--62914937 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
62914860 TTTAAAACTC
* *
62914870 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
62914897 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
62914925 TAGGGGTAATTTC
1 TAGGGGTAATTTC
62914938 GTGATCTACG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.21, C:0.10, G:0.25, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCAGTAATTTTGCTCTT
Found at i:62918557 original size:32 final size:33
Alignment explanation
Indices: 62918511--62918576 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
62918501 ATAACACAGC
62918511 ATCAGTACAGTCTGGGCCAAAGCCCTATTCAGT
1 ATCAGTACAGTCTGGGCCAAAGCCCTATTCAGT
*
62918544 ATCAGTA-AGTCTGGGCCAAAGCCTTATTCAGT
1 ATCAGTACAGTCTGGGCCAAAGCCCTATTCAGT
62918576 A
1 A
62918577 ACAATATAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 25 0.78
33 7 0.22
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (33 bp):
ATCAGTACAGTCTGGGCCAAAGCCCTATTCAGT
Found at i:62918772 original size:26 final size:27
Alignment explanation
Indices: 62918729--62918787 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
62918719 AGCGTAGCTG
* *
62918729 CCAGTAATAGTAAGTGTGGCA-AGCCA
1 CCAGTAATAGCAAGTGTGACATAGCCA
*
62918755 CCAGTAATAGCATA-TGTGACATAGTCA
1 CCAGTAATAGCA-AGTGTGACATAGCCA
62918782 CCAGTA
1 CCAGTA
62918788 TAGTACTTCC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
CCAGTAATAGCAAGTGTGACATAGCCA
Found at i:62926566 original size:33 final size:33
Alignment explanation
Indices: 62926524--62926600 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 33
62926514 ATAACACAGC
*
62926524 ATCAGTACAGTCTAGGCAAAAGCCTTAGTCAGT
1 ATCAGTACAGTCTAGGCAAAAGCCCTAGTCAGT
* * *
62926557 ATCAGTACAGTCTGGGCCAAAGCCCTATTCAGT
1 ATCAGTACAGTCTAGGCAAAAGCCCTAGTCAGT
62926590 ATCAGTACAGT
1 ATCAGTACAGT
62926601 GCAAAATGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (33 bp):
ATCAGTACAGTCTAGGCAAAAGCCCTAGTCAGT
Found at i:62929256 original size:43 final size:43
Alignment explanation
Indices: 62929175--62929260 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
62929165 AAATCGTACA
**
62929175 ATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
62929218 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATATCG
62929261 GAATCACATA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 34 0.89
44 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:62930450 original size:14 final size:15
Alignment explanation
Indices: 62930433--62930461 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62930423 TTACAAAAAT
62930433 TTCACACAT-ATAAA
1 TTCACACATGATAAA
62930447 TTCACACATGATAAA
1 TTCACACATGATAAA
62930462 CACAAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
TTCACACATGATAAA
Found at i:62938729 original size:14 final size:15
Alignment explanation
Indices: 62938712--62938740 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62938702 TCATGAAAAT
62938712 TTCACACAT-ATAAA
1 TTCACACATAATAAA
62938726 TTCACACATAATAAA
1 TTCACACATAATAAA
62938741 CACAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:62941641 original size:29 final size:29
Alignment explanation
Indices: 62941608--62941678 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
62941598 ATTCATATTT
* *
62941608 CCCATTTGGCCCAAATCACCTGTATATGG
1 CCCATTAGGCCCAAATCACATGTATATGG
*
62941637 CCCATTAGGCCCAAATCACATTTATATGG
1 CCCATTAGGCCCAAATCACATGTATATGG
*
62941666 CCCGTTAGGCCCA
1 CCCATTAGGCCCA
62941679 GTCACATTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATGTATATGG
Found at i:62941915 original size:8 final size:8
Alignment explanation
Indices: 62941902--62941952 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
62941892 ATAGCCAAAC
62941902 TTTCGGCT
1 TTTCGGCT
*
62941910 TTTCGGCA
1 TTTCGGCT
*
62941918 TTTCAGCT
1 TTTCGGCT
**
62941926 TTTCAACT
1 TTTCGGCT
*
62941934 TTTCGGCA
1 TTTCGGCT
62941942 TTTCGGCT
1 TTTCGGCT
62941950 TTT
1 TTT
62941953 GCTGATACAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.10, C:0.24, G:0.18, T:0.49
Consensus pattern (8 bp):
TTTCGGCT
Found at i:62945034 original size:75 final size:73
Alignment explanation
Indices: 62944949--62945125 Score: 231
Period size: 67 Copynumber: 2.5 Consensus size: 73
62944939 TCACTAGATA
* * * * *
62944949 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATATATGTGGCGAAGCCACCGGATTACA
1 CAGATATTGTGACGAAGTCACCAGAACAG--ATATATATATATGTGGCGAAGCCACCAGATTACA
62945014 GCGAGGCTGC
64 GCGAGGCTGC
* *
62945024 CAGATATTGTGACGAAGTCACCAGAACAG------ATATATGTGGCGAGGCCACCAGATTGCAGC
1 CAGATATTGTGACGAAGTCACCAGAACAGATATATATATATGTGGCGAAGCCACCAGATTACAGC
62945083 GAGGCTGC
66 GAGGCTGC
62945091 CAGATATTGTGACGAAGTCACCAGAACAGATATAT
1 CAGATATTGTGACGAAGTCACCAGAACAGATATAT
62945126 GTGGCGAGGT
Statistics
Matches: 89, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
67 64 0.72
75 25 0.28
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (73 bp):
CAGATATTGTGACGAAGTCACCAGAACAGATATATATATATGTGGCGAAGCCACCAGATTACAGC
GAGGCTGC
Found at i:62945072 original size:27 final size:26
Alignment explanation
Indices: 62945024--62945075 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62945014 GCGAGGCTGC
*
62945024 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
62945050 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
62945076 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62945094 original size:67 final size:67
Alignment explanation
Indices: 62944986--62945161 Score: 307
Period size: 67 Copynumber: 2.6 Consensus size: 67
62944976 AGATATATAT
* * *
62944986 ATATATGTGGCGAAGCCACCGGATTACAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
62945051 AG
66 AG
62945053 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
62945118 AG
66 AG
* *
62945120 ATATATGTGGCGAGGTCACCAGATTGCAGCGAGTCTGCCAGA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
62945162 ACGCTTCCTC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 104 1.00
ACGTcount: A:0.30, C:0.22, G:0.30, T:0.19
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
AG
Done.