Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 210 of 328
Found at i:62945137 original size:27 final size:26
Alignment explanation
Indices: 62945091--62945142 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
62945081 GCGAGGCTGC
62945091 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGTCACCAGAA
* *
62945117 CAGATATATGTGGCGAGGTCACCAGA
1 CAGATAT-TGTGACGAAGTCACCAGA
62945143 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGTCACCAGAA
Found at i:62945770 original size:26 final size:26
Alignment explanation
Indices: 62945741--62945793 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
62945731 TCACACAAGT
* *
62945741 TAGTCATTTACGCACGAGGGGCAAAA
1 TAGTCATTAACACACGAGGGGCAAAA
* *
62945767 TAGTCATTAACACCCTAGGGGCAAAA
1 TAGTCATTAACACACGAGGGGCAAAA
62945793 T
1 T
62945794 GGTAATTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
TAGTCATTAACACACGAGGGGCAAAA
Found at i:62945824 original size:27 final size:27
Alignment explanation
Indices: 62945794--62945937 Score: 155
Period size: 27 Copynumber: 5.4 Consensus size: 27
62945784 GGGGCAAAAT
* * * *
62945794 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62945821 GGTAATTCAACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
62945848 GGTATTTCTACCTTACAAGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62945875 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62945902 TGTAATTCTACCTTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
62945928 GGTAATTCTA
1 GGTAATTCTA
62945938 AAACTTATCC
Statistics
Matches: 94, Mismatches: 23, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
26 12 0.13
27 82 0.87
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:62952826 original size:40 final size:40
Alignment explanation
Indices: 62952725--62952869 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
62952715 TACTCGAATG
*
62952725 ATATCCGGGCTAAGTCTCGAAGG-ATTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCT-AGCGACT
* * *
62952766 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
62952806 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
62952846 ATATCCGGGCTAAGACTCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
62952870 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 26 0.29
42 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:62957746 original size:40 final size:40
Alignment explanation
Indices: 62957638--62957847 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
62957628 CGGGATTTAA
* * * * *
62957638 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
62957678 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62957718 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62957758 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62957798 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62957838 CCGGATATAT
1 CCGGATATAT
62957848 TCGCATTCGT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:62957894 original size:21 final size:22
Alignment explanation
Indices: 62957858--62957900 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
62957848 TCGCATTCGT
62957858 CTTAGCATATATTCAAT-TTCA
1 CTTAGCATATATTCAATATTCA
62957879 CTTA-CATATATATCAATATTCA
1 CTTAGCATATAT-TCAATATTCA
62957901 AGACACGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 9 0.45
22 4 0.20
ACGTcount: A:0.37, C:0.19, G:0.02, T:0.42
Consensus pattern (22 bp):
CTTAGCATATATTCAATATTCA
Found at i:62965899 original size:40 final size:40
Alignment explanation
Indices: 62965791--62966040 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
62965781 CGGGATTTAA
* * * * *
62965791 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
62965831 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62965871 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62965911 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62965951 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62965991 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62966031 CCGGATATAT
1 CCGGATATAT
62966041 TCCAATGTTC
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:62968663 original size:40 final size:39
Alignment explanation
Indices: 62968536--62968665 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
62968526 ATGCTGGAAA
* *
62968536 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
62968576 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
62968616 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
62968656 TTATATCCGG
1 TTATATCCGG
62968666 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:62971074 original size:16 final size:18
Alignment explanation
Indices: 62971055--62971087 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
62971045 CATACGAATT
62971055 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
62971071 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
62971088 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:62971716 original size:43 final size:43
Alignment explanation
Indices: 62971654--62971808 Score: 206
Period size: 43 Copynumber: 3.6 Consensus size: 43
62971644 CTGAACTCAT
* * *
62971654 TCACTGGCATTA-CGCCTGCTACGCTCAAAGCCTGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCTGATATTAAC
*
62971696 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCTGATATTAAC
** * * *
62971739 TCACCAACATTATAGCCTGCTAGGATTGAAA-CCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGCCTGATATTAAC
62971782 TCACCGGCATTATAGCCTGCTAGGCTC
1 TCACCGGCATTATAGCCTGCTAGGCTC
62971809 GAGGGCCCGA
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
42 12 0.12
43 82 0.85
44 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCTGATATTAAC
Found at i:62974610 original size:40 final size:40
Alignment explanation
Indices: 62974555--62974735 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
62974545 CATTTGAATG
62974555 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
62974595 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
62974635 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
62974675 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
62974715 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
62974736 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:62982604 original size:40 final size:40
Alignment explanation
Indices: 62982549--62982729 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
62982539 CATTTGAATG
62982549 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
62982589 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
62982629 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
62982669 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
62982709 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
62982730 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:63002441 original size:47 final size:47
Alignment explanation
Indices: 63002372--63002494 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
63002362 AACAGCTCGT
63002372 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63002419 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
63002466 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
63002495 TAATGTGAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:63002531 original size:48 final size:48
Alignment explanation
Indices: 63002472--63002691 Score: 332
Period size: 48 Copynumber: 4.6 Consensus size: 48
63002462 TGAAAGTGTA
* *
63002472 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* * *
63002520 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* *
63002568 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* * * *
63002616 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
*
63002664 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
63002692 AGAATGTTGT
Statistics
Matches: 157, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 157 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
Found at i:63002790 original size:37 final size:37
Alignment explanation
Indices: 63002740--63002825 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
63002730 GGAAATATAT
*
63002740 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
63002777 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
63002814 TCCGGGTAAGAC
1 TCCGGGTAAGAC
63002826 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:63005130 original size:24 final size:24
Alignment explanation
Indices: 63005102--63005162 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
63005092 AACCGAATTT
* * *
63005102 GCACACATAGTGCTA-ATTATACTC
1 GCACACATAGTGCCATAGTAAAC-C
63005126 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
63005150 GCACACATAGTGC
1 GCACACATAGTGC
63005163 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:63007676 original size:30 final size:29
Alignment explanation
Indices: 63007583--63007686 Score: 138
Period size: 29 Copynumber: 3.6 Consensus size: 29
63007573 TAATCGATCA
* *
63007583 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATATAATTTAAGCT
* *
63007612 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTTAAGCT
*
63007641 CGCACACTTAGTGCCATACT-TTTTCAAGCT
1 CGCACACTTAGTGCCATA-TAATTT-AAGCT
63007671 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63007687 ACCTTGTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
29 45 0.68
30 21 0.32
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAATTTAAGCT
Found at i:63009397 original size:28 final size:29
Alignment explanation
Indices: 63009330--63009430 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
63009320 ATAGTGAATC
*
63009330 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
63009359 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
63009387 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
63009417 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63009431 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:63017194 original size:28 final size:29
Alignment explanation
Indices: 63017127--63017227 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
63017117 ATAGTGAATC
*
63017127 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
63017156 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
63017184 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
63017214 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63017228 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:63022362 original size:40 final size:40
Alignment explanation
Indices: 63022307--63022516 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
63022297 AACATTGGAA
63022307 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63022347 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63022387 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
63022427 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
63022466 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
63022507 CTATATCCGG
1 ATATATCCGG
63022517 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63030498 original size:40 final size:40
Alignment explanation
Indices: 63030443--63030652 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
63030433 AACATTGGAA
63030443 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63030483 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63030523 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
63030563 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
63030602 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
63030643 CTATATCCGG
1 ATATATCCGG
63030653 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63036548 original size:40 final size:40
Alignment explanation
Indices: 63036457--63036651 Score: 281
Period size: 40 Copynumber: 5.0 Consensus size: 40
63036447 AACATTGGAA
63036457 ATATATCCGGGCTAAGACCCGAAGGCATTCGT-CGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63036495 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63036535 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * *
63036575 ATATATCCGGGCTAAGACCCGAAGGCCTT-GTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * *
63036613 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGT
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
63036652 CGCTAATCCG
Statistics
Matches: 142, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
38 34 0.24
39 32 0.23
40 76 0.54
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63036646 original size:79 final size:80
Alignment explanation
Indices: 63036461--63036651 Score: 273
Period size: 79 Copynumber: 2.4 Consensus size: 80
63036451 TTGGAAATAT
63036461 ATCCGGGCTAAGACCCGAAGGCATTCGT-CGAG-TGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * *
63036524 CGTGCGAGTTGATAT
66 CGTGCAAGTTCACAA
*
63036539 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCCTT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
63036604 -GTGCAAG-TCACCAA
66 CGTGCAAGTTCA-CAA
* * *
63036618 ATCCGGGTTATGACCCGAAGGCAATCGTGCGAGT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
63036652 CGCTAATCCG
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
78 30 0.29
79 42 0.41
80 30 0.29
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTCACAA
Found at i:63051094 original size:23 final size:21
Alignment explanation
Indices: 63051062--63051104 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
63051052 TTTATGTAAA
*
63051062 AGAAAGGAAATAATAAAAGAAAT
1 AGAAAAGAAA-AA-AAAAGAAAT
63051085 AGAAAAGAAAAAAAAAGAAA
1 AGAAAAGAAAAAAAAAGAAA
63051105 AGATAAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 2 0.11
23 9 0.47
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (21 bp):
AGAAAAGAAAAAAAAAGAAAT
Found at i:63052348 original size:29 final size:28
Alignment explanation
Indices: 63052289--63052391 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
63052279 GTGACGAGAT
* *
63052289 TGGCACTAAGTGTGCAAGCTGGAAA-TATA
1 TGGCACT-AGTGTGCGAGCT-CAAATTATA
*
63052318 TGGCACTGAGTGTGCGAGCTCAAATTGTA
1 TGGCACT-AGTGTGCGAGCTCAAATTATA
* * * *
63052347 TGGCACTATGTGTGCGGGCTTAAATCACA
1 TGGCACTA-GTGTGCGAGCTCAAATTATA
*
63052376 TGCCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
63052392 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 4 0.07
29 56 0.92
30 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTCAAATTATA
Found at i:63068647 original size:26 final size:26
Alignment explanation
Indices: 63068575--63068649 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
63068565 GGCCACATAT
63068575 ATACTGATACTAGCAGCTTTGCTGCG
1 ATACTGATACTAGCAGCTTTGCTGCG
* * * *
63068601 ATACTGCTATTGGCAACTTTGCTGC-
1 ATACTGATACTAGCAGCTTTGCTGCG
* *
63068626 ACTACTGGTACTAGCAGTTTTGCT
1 A-TACTGATACTAGCAGCTTTGCT
63068650 ACAATATTGG
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 1 0.03
26 38 0.97
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
ATACTGATACTAGCAGCTTTGCTGCG
Found at i:63073065 original size:92 final size:92
Alignment explanation
Indices: 63072908--63073078 Score: 288
Period size: 92 Copynumber: 1.9 Consensus size: 92
63072898 CGCCCATAAG
* * *
63072908 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTGGCATCCATGAGTGAACTCGGAATCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTGGCATCCATAAGTGAACTCGGAATCAACTCA
63072973 ACGAGTTCGGATGCCTAGTTCATCTCA
66 ACGAGTTCGGATGCCTAGTTCATCTCA
* * *
63073000 CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTGGCATCCATAAGTGAACTCGGAATCAACTCA
63073065 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
63073079 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTGGCATCCATAAGTGAACTCGGAATCAACTCA
ACGAGTTCGGATGCCTAGTTCATCTCA
Found at i:63073075 original size:46 final size:46
Alignment explanation
Indices: 63072901--63073075 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
63072891 TGTAACCCGC
* * * *
63072901 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTGGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * *
63072947 CCATGAGTGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTT-CAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
63072996 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
63073039 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGA
63073076 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
45 2 0.02
46 86 0.83
47 2 0.02
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:63074573 original size:25 final size:25
Alignment explanation
Indices: 63074545--63074604 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
63074535 CCTTGCCATG
63074545 CATGTGACGCCACCTCTAAGCCCCA
1 CATGTGACGCCACCTCTAAGCCCCA
63074570 CATGTGACGCCACCTCTAAGCCCCA
1 CATGTGACGCCACCTCTAAGCCCCA
63074595 CATGTGACGC
1 CATGTGACGC
63074605 TAGTTGCCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.23, C:0.42, G:0.18, T:0.17
Consensus pattern (25 bp):
CATGTGACGCCACCTCTAAGCCCCA
Found at i:63078245 original size:48 final size:48
Alignment explanation
Indices: 63078134--63078343 Score: 218
Period size: 46 Copynumber: 4.5 Consensus size: 48
63078124 TGTGTGCTAA
* *
63078134 TGTAAGACATGTCTGGGACATGCATCGGCC---ACATTATGA-GAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA-TAT-ACAAGCCAG
* * *
63078180 TGTAAGACATGTTTGGGACATGCATCGGCCTTGAGATATACAATCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCAG
* * * **
63078228 TGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CTA-GAGTTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCAG
* * *
63078274 TGTAAGACATGTCTGGGACGTGCATCGGCCTCGAGATATACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCAG
*
63078322 TGT-AGAACCTGTCTGGGACATG
1 TGTAAG-ACATGTCTGGGACATG
63078344 GTGTCAGCTT
Statistics
Matches: 136, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
46 64 0.47
47 7 0.05
48 63 0.46
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCAG
Found at i:63078281 original size:94 final size:92
Alignment explanation
Indices: 63078132--63078343 Score: 259
Period size: 94 Copynumber: 2.3 Consensus size: 92
63078122 TATGTGTGCT
*
63078132 AATGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTTTGGG
1 AATGTAAGACATGTCTGGGACATGCATCGG-C-CATTATGAGAGCCAGTGTAAGACATGTCTGGG
* *
63078197 ACATGCATCGGCCTTGAGATATACAATCC
64 ACATGCATCGGCCTCGAGATATACAAGCC
**
63078226 AATGTAAGACATGTCTGGGACATGCATCGG-CATTGA-GACTAGAGTTAGTGTAAGACATGTCTG
1 AATGTAAGACATGTCTGGGACATGCATCGGCCATT-ATG---AGAGCCAGTGTAAGACATGTCTG
* *
63078289 GGACGTGCATCGGCCTCGAGATATACAAGCT
62 GGACATGCATCGGCCTCGAGATATACAAGCC
* *
63078320 AGTGT-AGAACCTGTCTGGGACATG
1 AATGTAAG-ACATGTCTGGGACATG
63078344 GTGTCAGCTT
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
91 5 0.05
92 1 0.01
93 2 0.02
94 96 0.92
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (92 bp):
AATGTAAGACATGTCTGGGACATGCATCGGCCATTATGAGAGCCAGTGTAAGACATGTCTGGGAC
ATGCATCGGCCTCGAGATATACAAGCC
Found at i:63078440 original size:49 final size:49
Alignment explanation
Indices: 63078363--63078492 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 49
63078353 TGTTGTGTTT
* * * *
63078363 CAGTGTAAGACCTATCTTGGATATGGCATCGACATCGATA-G-ACGAGAGC
1 CAGTGTAAGACTTATCTGGGACATGGCATCGACATCGATATGTA--AAAGC
* * * *
63078412 CAGTGTAAGACTTATCTGGGACACGGCATTGACCTCGATATGTAAAAGT
1 CAGTGTAAGACTTATCTGGGACATGGCATCGACATCGATATGTAAAAGC
* *
63078461 CAGTGTAAGACTTGTTTGGGACATGGCATCGA
1 CAGTGTAAGACTTATCTGGGACATGGCATCGA
63078493 TTTTGATGTG
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 65 0.97
50 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACTTATCTGGGACATGGCATCGACATCGATATGTAAAAGC
Found at i:63089827 original size:27 final size:28
Alignment explanation
Indices: 63089785--63089890 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 28
63089775 GAGAAAGCGT
* *
63089785 TCTGGTGACTCTGCCACAAATATATG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
63089812 TCTGGTGGCTCAGCCATAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
63089840 TCTGGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
63089867 TCTGGTGACTCTGTCAC-AATATCT
1 TCTGGTGGCTCTGCCACAAATATCT
63089891 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:63092032 original size:29 final size:29
Alignment explanation
Indices: 63091998--63092072 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
63091988 TACTCGATTT
*
63091998 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
63092027 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
63092056 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
63092073 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:63092089 original size:29 final size:29
Alignment explanation
Indices: 63092056--63092129 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
63092046 CCTTCGAGCT
63092056 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
63092085 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63092114 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63092130 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63098474 original size:40 final size:39
Alignment explanation
Indices: 63098429--63098558 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
63098419 CGGAATACAA
63098429 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
63098469 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
63098509 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
63098549 CCGGATATAA
1 CCGGATATAA
63098559 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:63106514 original size:40 final size:39
Alignment explanation
Indices: 63106469--63106598 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
63106459 CGGAATACAA
63106469 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
63106509 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
63106549 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
63106589 CCGGATATAA
1 CCGGATATAA
63106599 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:63111368 original size:26 final size:26
Alignment explanation
Indices: 63111328--63111408 Score: 112
Period size: 26 Copynumber: 3.1 Consensus size: 26
63111318 AACACACCAA
*
63111328 TATCGCAGCAAAGCTACCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTATCAG
63111354 TAGT-GCAGCAAAGCTGCCAGTAGT-AG
1 TA-TCGCAGCAAAGCTGCCAGTA-TCAG
*
63111380 TATCGCAGCAAAGCTGCTAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTATCAG
63111406 TAT
1 TAT
63111409 ATATGTGACA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.04
26 45 0.92
27 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTATCAG
Found at i:63113219 original size:29 final size:28
Alignment explanation
Indices: 63113181--63113280 Score: 128
Period size: 29 Copynumber: 3.5 Consensus size: 28
63113171 ACGAGATTGT
* *
63113181 CACTAAGTGTGCAAGCTTGAAATGTATGG
1 CACTAAGTGTGCGAGCTT-AAATATATGG
63113210 CACTAAGTGTGCGAGCTTAAATTATATGG
1 CACTAAGTGTGCGAGCTTAAA-TATATGG
* * *
63113239 CACTATGTGTGTGAGCTTAAATCAAATGG
1 CACTAAGTGTGCGAGCTTAAAT-ATATGG
63113268 CACTAAGTGTGCG
1 CACTAAGTGTGCG
63113281 TGATCGATTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 58 0.94
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAGCTTAAATATATGG
Found at i:63117799 original size:18 final size:18
Alignment explanation
Indices: 63117776--63117811 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
63117766 GAATGTCAGT
63117776 CCACCCGGGTAGTACTAA
1 CCACCCGGGTAGTACTAA
63117794 CCACCCGGGTAGTACTAA
1 CCACCCGGGTAGTACTAA
63117812 AATGTACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.22, T:0.17
Consensus pattern (18 bp):
CCACCCGGGTAGTACTAA
Found at i:63120866 original size:29 final size:28
Alignment explanation
Indices: 63120828--63120927 Score: 128
Period size: 29 Copynumber: 3.5 Consensus size: 28
63120818 ACGAGATTGT
* *
63120828 CACTAAGTGTGCAAGCTTGAAATGTATGG
1 CACTAAGTGTGCGAGCTT-AAATATATGG
63120857 CACTAAGTGTGCGAGCTTAAATTATATGG
1 CACTAAGTGTGCGAGCTTAAA-TATATGG
* * *
63120886 CACTATGTGTGTGAGCTTAAATCAAATGG
1 CACTAAGTGTGCGAGCTTAAAT-ATATGG
63120915 CACTAAGTGTGCG
1 CACTAAGTGTGCG
63120928 TGATCGATTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 58 0.94
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAGCTTAAATATATGG
Found at i:63126899 original size:27 final size:28
Alignment explanation
Indices: 63126861--63126974 Score: 126
Period size: 28 Copynumber: 4.2 Consensus size: 28
63126851 GAGGAAGCGT
63126861 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
63126888 TCTGGTAGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
63126916 TCTGGTGGCCCTGCCACAATTATCTATA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * * *
63126944 TCTAGTGACTCTGTCA-TAATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
63126970 TCTGG
1 TCTGG
63126975 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 4 0.06
27 32 0.45
28 35 0.49
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:63126929 original size:28 final size:27
Alignment explanation
Indices: 63126859--63126974 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
63126849 TGGAGGAAGC
63126859 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
63126886 GATCTGGTAGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
63126913 GTTTCTGGTGGCCCTGCCACAATTATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCT
* * * * *
63126941 ATATCTAGTGACTCTGTCA-TAATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
63126968 GTTCTGG
1 GTTCTGG
63126975 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
26 4 0.06
27 34 0.47
28 34 0.47
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:63126965 original size:55 final size:54
Alignment explanation
Indices: 63126859--63126974 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
63126849 TGGAGGAAGC
* *
63126859 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTAGCTCTGCCACAAATATCT
1 GTTCTGGTGGCCCTGCCACAAATATCTGATCTAGTAGCTCTGCCACAAATATCT
* * * *
63126913 GTTTCTGGTGGCCCTGCCACAATTATCTATATCTAGT-GACTCTGTCA-TAATATCT
1 G-TTCTGGTGGCCCTGCCACAAATATCT-GATCTAGTAG-CTCTGCCACAAATATCT
63126968 GTTCTGG
1 GTTCTGG
63126975 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
54 7 0.13
55 33 0.62
56 13 0.25
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
GTTCTGGTGGCCCTGCCACAAATATCTGATCTAGTAGCTCTGCCACAAATATCT
Found at i:63132414 original size:26 final size:26
Alignment explanation
Indices: 63132334--63132414 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
63132324 AACACACCAA
*
63132334 TATCGCAGCAAAGCTGCTAGTACTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
* * *
63132360 TAGCGCAGCAAAGTTGCCAGTAGTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
*
63132386 TATCGCAGCAAAGCTGCCAGTATTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
63132412 TAT
1 TAT
63132415 ATATGTGGCC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTACTAG
Found at i:63134135 original size:39 final size:39
Alignment explanation
Indices: 63134064--63134206 Score: 182
Period size: 39 Copynumber: 3.6 Consensus size: 39
63134054 GCTACTCGTT
*
63134064 CAAATGCCTTCGGGACGTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTT-GGGACTTAGCCCGGTTATAGTAACTCGCA
*
63134104 CAAATGCCTTGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
63134143 CAAATGCCTTTGGATCTTAGTCCGGTTATAGTCACTTAGCA
1 CAAATGCCTTGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
63134184 CAAA-GCCTTGGGACTTAGCCCGG
1 CAAATGCCTTGGGACTTAGCCCGG
63134207 ACATCATTCG
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
39 48 0.53
40 34 0.38
41 8 0.09
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63142036 original size:40 final size:40
Alignment explanation
Indices: 63141999--63142183 Score: 241
Period size: 40 Copynumber: 4.6 Consensus size: 40
63141989 GCTACTCGTT
*
63141999 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63142039 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
63142079 CAAATGCCTTCGGGACTTAACCTGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
63142119 CAAATGCCTTC-GGATCTTAGTTCGGTTATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
63142160 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
63142184 ACATCATTCG
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.03
40 110 0.87
41 13 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63142902 original size:2 final size:2
Alignment explanation
Indices: 63142895--63142920 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63142885 ATGTGCAAGC
63142895 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
63142921 GTGCAAGGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63148115 original size:18 final size:18
Alignment explanation
Indices: 63148076--63148116 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
63148066 TTTTTATAGC
* *
63148076 AGATTATTGAAGCTTAGT
1 AGATTATTAAAGCTTAGA
*
63148094 AGATTATTAAAGCTTGGA
1 AGATTATTAAAGCTTAGA
63148112 AGATT
1 AGATT
63148117 GATAATGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.22, T:0.37
Consensus pattern (18 bp):
AGATTATTAAAGCTTAGA
Found at i:63159303 original size:43 final size:43
Alignment explanation
Indices: 63158871--63159286 Score: 543
Period size: 43 Copynumber: 9.7 Consensus size: 43
63158861 GTATATGAGA
* * *
63158871 CATCAATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * *
63158914 CATTGATATATGATTACGTGTAAGACCATGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
** * *
63158957 CATCGATATGTGATTACGCATAAGACCATGTCTGGGATGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
*
63159000 CATCGATATGTGATTACGTGTAAGACCACGTTTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
*
63159043 GATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* *
63159086 CATCGATATGTGATTACGTGTAAGACGACATCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
63159129 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * * *
63159172 CATCGATATGTGTTTAAGAGTAAGACC-CTTTCTGGGACAG-TGG
1 CATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGG
* * * * *
63159215 CATTGATATGTGTTTAAGAGTAAGACC-CTTTCTGGGACAG-TGG
1 CATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGG
* *
63159258 CATCGATATGAGATTACATGTAAGACCAC
1 CATCGATATGTGATTACGTGTAAGACCAC
63159287 ATCAAGGAAG
Statistics
Matches: 336, Mismatches: 34, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
42 1 0.00
43 333 0.99
44 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
Found at i:63165192 original size:6 final size:6
Alignment explanation
Indices: 63165181--63165349 Score: 152
Period size: 6 Copynumber: 27.8 Consensus size: 6
63165171 AACCAAAATG
* *
63165181 AGAATC AGAATC AGAATC AGTAA-C AGAATT AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
63165229 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
63165278 AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC
*
63165326 ACGTGA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
63165350 GTGAATGCAA
Statistics
Matches: 133, Mismatches: 16, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
5 9 0.07
6 113 0.85
7 8 0.06
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:63165194 original size:30 final size:30
Alignment explanation
Indices: 63165181--63165318 Score: 215
Period size: 30 Copynumber: 4.6 Consensus size: 30
63165171 AACCAAAATG
* *
63165181 AGAATCAGAATCAGAATCAGTAACAGAATT
1 AGAATCAGAATCAGAATTAGTAACAGAATC
63165211 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
63165241 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
63165272 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
63165302 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
63165319 CAGAATTACG
Statistics
Matches: 99, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
29 1 0.01
30 69 0.70
31 29 0.29
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:63165283 original size:67 final size:67
Alignment explanation
Indices: 63165204--63165349 Score: 213
Period size: 67 Copynumber: 2.2 Consensus size: 67
63165194 GAATCAGTAA
* ** *
63165204 CAGAATTAGAATCAGAATCAATATTAGTAA-CAGAATCAGAATCAGAATCAGAATTAGGTGACAG
1 CAGAATCAGAATCAGAATCAATAACAG-AATCAGAATCAGAATCAGAATCAGAATTACGTGACAG
63165268 AAT
65 AAT
* * *
63165271 CAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATCAGAATTACGTGACAGA
1 CAGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAGAATCAGAATTACGTGACAGA
63165336 AT
66 AT
63165338 CAGAATCAGAAT
1 CAGAATCAGAAT
63165350 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
66 2 0.03
67 69 0.97
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (67 bp):
CAGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAGAATCAGAATTACGTGACAGA
AT
Found at i:63165336 original size:61 final size:61
Alignment explanation
Indices: 63165181--63165349 Score: 232
Period size: 61 Copynumber: 2.7 Consensus size: 61
63165171 AACCAAAATG
* * *
63165181 AGAATCAGAATCAGAATCAG-TAACAGAATTAGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGATGACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATC
* *
63165241 AGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGATGACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATC
63165302 AGAATCAGAATCAGAATCAGAATTACGTGACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATCAG----A--TGACAGAATCAGAATCAGAAT
63165350 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
60 19 0.20
61 56 0.58
67 21 0.22
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (61 bp):
AGAATCAGAATCAGAATCAGATGACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATC
Found at i:63165752 original size:22 final size:22
Alignment explanation
Indices: 63165704--63165762 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
63165694 GTAAATACGT
*
63165704 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
63165726 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
63165748 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
63165763 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:63165889 original size:27 final size:26
Alignment explanation
Indices: 63165850--63165933 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 26
63165840 TCGATCGGTC
*
63165850 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGACAGAGCCACCAA
* *
63165876 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAA
* * *
63165903 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGACAGAGCCACCAA
63165930 AACA
1 AACA
63165934 CTTCCTCCGT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAA
Found at i:63166161 original size:27 final size:27
Alignment explanation
Indices: 63166131--63166326 Score: 232
Period size: 27 Copynumber: 7.3 Consensus size: 27
63166121 GGGGCAAAAT
* * *
63166131 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63166158 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63166185 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63166212 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63166239 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63166266 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63166293 AGAAATTCTACCTTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
63166320 AGTAATT
1 GGTAATT
63166327 TCACAATCAA
Statistics
Matches: 147, Mismatches: 21, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 145 0.99
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63166367 original size:27 final size:27
Alignment explanation
Indices: 63166331--63166551 Score: 241
Period size: 27 Copynumber: 8.2 Consensus size: 27
63166321 GTAATTTCAC
*
63166331 AATCAAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
63166358 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
63166385 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAACGA-TAATTCTGTA
** * * **
63166412 AATTAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
63166439 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
63166466 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * * *
63166493 AA-CTGAGAGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
*
63166520 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
63166547 AATCG
1 AATCG
63166552 GGAGTACTTT
Statistics
Matches: 160, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 7 0.04
27 148 0.93
28 5 0.03
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:63166442 original size:81 final size:81
Alignment explanation
Indices: 63166335--63166551 Score: 294
Period size: 81 Copynumber: 2.7 Consensus size: 81
63166325 TTTCACAATC
* * * *
63166335 AAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT-AAA
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAA
* * *
63166398 CTAGTAATTCTGTAAATT
65 C-AATAATTCTATAAACT
**
63166416 AAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
63166481 AATAATTCTATAAACT
66 AATAATTCTATAAACT
* * *
63166497 GAGAGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
63166552 GGAGTACTTT
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
81 115 0.96
82 5 0.04
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
AATAATTCTATAAACT
Found at i:63170698 original size:29 final size:29
Alignment explanation
Indices: 63170656--63170758 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
63170646 GTGACAAGAT
63170656 TGGCACTAAGTGTGCGGGCTTGGAAGGTA
1 TGGCACTAAGTGTGCGGGCTTGGAAGGTA
** * **
63170685 TGGCACTAAGTGTGCGAACTT-AAATTATA
1 TGGCACTAAGTGTGCGGGCTTGGAA-GGTA
63170714 TGGCACTAAGTGTGCGGGCTTGGAAGGTA
1 TGGCACTAAGTGTGCGGGCTTGGAAGGTA
63170743 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63170759 AACTTAAATT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.94
30 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGGGCTTGGAAGGTA
Found at i:63170746 original size:58 final size:58
Alignment explanation
Indices: 63170656--63170845 Score: 310
Period size: 58 Copynumber: 3.3 Consensus size: 58
63170646 GTGACAAGAT
63170656 TGGCACTAAGTGTGCGGGCTTGGAAGGTATGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGGGCTTGGAAGGTATGGCACTAAGTGTGCGAACTTAAATTATA
63170714 TGGCACTAAGTGTGCGGGCTTGGAAGGTATGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGGGCTTGGAAGGTATGGCACTAAGTGTGCGAACTTAAATTATA
** * **
63170772 TGGCACTAAGTGTGCGAACTT-AAATTATATGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGGGCTTGGAA-GGTATGGCACTAAGTGTGCGAACTTAAATTATA
*
63170830 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
63170846 AGTTTAAATC
Statistics
Matches: 125, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
57 2 0.02
58 123 0.98
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGGGCTTGGAAGGTATGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:63170846 original size:58 final size:58
Alignment explanation
Indices: 63170656--63170875 Score: 300
Period size: 58 Copynumber: 3.8 Consensus size: 58
63170646 GTGACAAGAT
* * *
63170656 TGGCACTAAGTGTGCGGGCTTGGAA-GGTATGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTT-AAATCGTATGGCACTAAGTGTGCGAACTTAAATTATA
* * *
63170714 TGGCACTAAGTGTGCGGGCTTGGAA-GGTATGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTT-AAATCGTATGGCACTAAGTGTGCGAACTTAAATTATA
* **
63170772 TGGCACTAAGTGTGCGAACTTAAATTATATGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAATCGTATGGCACTAAGTGTGCGAACTTAAATTATA
* * *
63170830 TGGCACTATGTGTGCGAGTTTAAATCGCATGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGAGCTTAAATCGTATGGCACTAAGTGTGCGA
63170876 GATCGTTTAT
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
57 2 0.01
58 148 0.99
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTTAAATCGTATGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:63170876 original size:29 final size:29
Alignment explanation
Indices: 63170683--63170875 Score: 271
Period size: 29 Copynumber: 6.7 Consensus size: 29
63170673 GCTTGGAAGG
63170683 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
** * **
63170712 TATGGCACTAAGTGTGCGGGCTTGGAA-GG
1 TATGGCACTAAGTGTGCGAACTT-AAATTA
63170741 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
63170770 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
63170799 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* ** **
63170828 TATGGCACTATGTGTGCGAGTTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
63170857 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
63170876 GATCGTTTAT
Statistics
Matches: 145, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
28 2 0.01
29 141 0.97
30 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:63175953 original size:29 final size:29
Alignment explanation
Indices: 63175920--63176022 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
63175910 GTGACGAGAT
63175920 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63175949 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
63175978 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
63176007 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
63176023 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63183157 original size:29 final size:29
Alignment explanation
Indices: 63183124--63183226 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
63183114 GTGACGAGAT
63183124 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63183153 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
63183182 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
63183211 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
63183227 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63184990 original size:40 final size:40
Alignment explanation
Indices: 63184934--63185101 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
63184924 CAATTGAATG
* *
63184934 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
63184975 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * * *
63185014 ATATCCGGGCTTATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
63185054 ATATCCGGGCTAAGACCCAAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
63185094 ATATCCGG
1 ATATCCGG
63185102 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
39 8 0.07
40 95 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:63185067 original size:80 final size:79
Alignment explanation
Indices: 63184934--63185101 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 79
63184924 CAATTGAATG
* *
63184934 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCAAAGGCA
*
63184999 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
63185014 ATATCCGGGCTT-ATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCAAAGG
1 ATATCCGGG-TTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCAAAGG
**
63185077 CATTCGTGCGTGTGGTT
63 CATTCGTGCAAGTGGTT
63185094 ATATCCGG
1 ATATCCGG
63185102 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
79 2 0.03
80 73 0.94
81 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCAAAGGCAT
TCGTGCAAGTGGTT
Found at i:63194902 original size:29 final size:30
Alignment explanation
Indices: 63194831--63194903 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 30
63194821 GACAAGATTG
* * * *
63194831 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
*
63194861 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
63194890 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63194904 GATTCACTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
29 18 0.47
30 20 0.53
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACA
Found at i:63196606 original size:39 final size:39
Alignment explanation
Indices: 63196544--63196657 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
63196534 CAGTGATGTT
*
63196544 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
** *
63196583 TATCCGGACTTAAGGTCTACAGGCTATGTGCTAGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
63196622 TAACCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
63196658 ATATGTCCCG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:63206380 original size:40 final size:40
Alignment explanation
Indices: 63206335--63206502 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
63206325 CGGAATACAA
63206335 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * * *
63206375 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTATC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
63206415 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * *
63206455 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTGTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
63206495 CCGGATAT
1 CCGGATAT
63206503 CATTCAATTG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 105 0.96
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:63206475 original size:80 final size:80
Alignment explanation
Indices: 63206335--63206502 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
63206325 CGGAATACAA
* *
63206335 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
63206400 CCTTCGGGTATTATC
66 CCTTCGGGTATTAAC
** *
63206415 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
63206478 TGCCTTCGGGTGTTAAC
64 TGCCTTCGGGTATTAAC
63206495 CCGGATAT
1 CCGGATAT
63206503 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:63208817 original size:28 final size:27
Alignment explanation
Indices: 63208751--63208823 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
63208741 ATAGTGAGTC
*
63208751 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
63208778 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
63208806 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
63208824 CAAATTTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 23 0.53
28 20 0.47
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:63216860 original size:28 final size:27
Alignment explanation
Indices: 63216794--63216866 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
63216784 ATAGTGAGTC
*
63216794 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
63216821 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
63216849 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
63216867 CAAATTTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 23 0.53
28 20 0.47
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:63224565 original size:20 final size:20
Alignment explanation
Indices: 63224540--63224579 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
63224530 CATGTTACAG
63224540 GGGTCGACTACACTGATCTT
1 GGGTCGACTACACTGATCTT
63224560 GGGTCGACTACACTGATCTT
1 GGGTCGACTACACTGATCTT
63224580 CGCGCATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (20 bp):
GGGTCGACTACACTGATCTT
Found at i:63225706 original size:40 final size:40
Alignment explanation
Indices: 63225661--63225828 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
63225651 CGGAATACAA
63225661 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
63225701 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * **
63225741 CGGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
63225781 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
63225821 CCGGATAT
1 CCGGATAT
63225829 CATTCAATTG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 106 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:63225801 original size:80 final size:80
Alignment explanation
Indices: 63225661--63225828 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
63225651 CGGAATACAA
* *
63225661 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
63225726 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* ** *
63225741 CGGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
63225804 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
63225821 CCGGATAT
1 CCGGATAT
63225829 CATTCAATTG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 74 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:63227959 original size:39 final size:39
Alignment explanation
Indices: 63227898--63228050 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
63227888 CAGTGATGTT
*
63227898 TATCCAGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
63227937 TATTCAGACTTAGGGTTCGCAGGCTATGTGTTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
63227976 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
63228015 TAACCGGACTTAAGGTCCGCAGGTTACGTGCTGGAA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAA
63228051 ATATGTCCGG
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 102 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (39 bp):
TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:63228074 original size:78 final size:78
Alignment explanation
Indices: 63227898--63228078 Score: 193
Period size: 78 Copynumber: 2.3 Consensus size: 78
63227888 CAGTGATGTT
** * ** * *
63227898 TATCCAGACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATTCAGACTTAGGGTTCGCAGGCTA
1 TATCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
* * *
63227963 TGTGTTGGAATTA
66 CGTGCTGGAAATA
** * *
63227976 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGTTA
1 TATCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
63228041 CGTGCTGGAAATA
66 CGTGCTGGAAATA
* **
63228054 TGTCC-GGGTTAAAGTCCCGCAGGCT
1 TATCCAGACTTAAAGT-CCGCAGGCT
63228079 TCGAGCTGGT
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 6 0.07
78 81 0.93
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (78 bp):
TATCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATA
Found at i:63228087 original size:39 final size:40
Alignment explanation
Indices: 63227992--63228118 Score: 93
Period size: 39 Copynumber: 3.2 Consensus size: 40
63227982 GACTTAGGGT
* * * ** *
63227992 CCGCAGGC-TATGTGCTGGAATTATAACCGGACTTAAGGT-
1 CCGCAGGCTTACGAGCTGGAAATAT-ACCGGGTTTAAAGTC
* *
63228031 CCGCAGG-TTACGTGCTGGAAATATGTCCGGG-TTAAAGTC
1 CCGCAGGCTTACGAGCTGGAAATAT-ACCGGGTTTAAAGTC
* * *
63228070 CCGCAGGCTT-CGAGCTGGTATTATACCGGGTTTAAATTC
1 CCGCAGGCTTACGAGCTGGAAATATACCGGGTTTAAAGTC
*
63228109 CCACAGGCTT
1 CCGCAGGCTT
63228119 GTGCTGGTAA
Statistics
Matches: 72, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
38 11 0.15
39 59 0.82
40 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGCAGGCTTACGAGCTGGAAATATACCGGGTTTAAAGTC
Found at i:63228603 original size:16 final size:16
Alignment explanation
Indices: 63228584--63228636 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
63228574 AGAAGAAAAA
63228584 TATGTGTTGAGAAATC
1 TATGTGTTGAGAAATC
* **
63228600 TATG-GTAGAAGAAAAA
1 TATGTGTTG-AGAAATC
*
63228616 TATGTGCTGAGAAATC
1 TATGTGTTGAGAAATC
63228632 TATGT
1 TATGT
63228637 ATATGTTTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
15 3 0.11
16 23 0.82
17 2 0.07
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (16 bp):
TATGTGTTGAGAAATC
Found at i:63228613 original size:32 final size:32
Alignment explanation
Indices: 63228572--63228635 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
63228562 TGGACTTTAA
*
63228572 GTAGAAGAAAAATATGTGTTGAGAAATCTATG
1 GTAGAAGAAAAATATGTGCTGAGAAATCTATG
63228604 GTAGAAGAAAAATATGTGCTGAGAAATCTATG
1 GTAGAAGAAAAATATGTGCTGAGAAATCTATG
63228636 TATATGTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.05, G:0.25, T:0.27
Consensus pattern (32 bp):
GTAGAAGAAAAATATGTGCTGAGAAATCTATG
Found at i:63230688 original size:29 final size:30
Alignment explanation
Indices: 63230641--63230708 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
63230631 TGGCCCAAGA
* * *
63230641 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
63230671 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
63230701 GAAAATAT
1 GTAAATAT
63230709 TTAAGGGTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.47, C:0.04, G:0.21, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:63255813 original size:93 final size:92
Alignment explanation
Indices: 63255706--63255971 Score: 406
Period size: 93 Copynumber: 2.9 Consensus size: 92
63255696 CGCCCATAAG
*
63255706 CGAACTCGGACTCAACTCAACGAGCTCGAGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCG-GCGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
* *
63255771 ATGAGCTCGGATGCCTAATTACATCTCA
65 ACGAGTTCGGATGCCTAATTACATCTCA
* *
63255799 CGAACTCGGACTCAACTCAACGAGTTTGGGCGTTTGCATCTATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAG-TTCGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
* *
63255864 ACAAGTTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAATTACATCTCA
* ** *
63255892 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGG-CGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
63255957 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
63255972 CAAATATCAG
Statistics
Matches: 157, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
92 4 0.03
93 151 0.96
94 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAATTACATCTCA
Found at i:63255966 original size:46 final size:47
Alignment explanation
Indices: 63255699--63255967 Score: 250
Period size: 46 Copynumber: 5.8 Consensus size: 47
63255689 TGTAACCCGC
* * * *
63255699 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGAGCGTTTACAT
* * *
63255745 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAATTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA-GCGT--TTACAT
* * * * *
63255795 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGG-GCGTTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGAGCGTTTACAT
* * *
63255838 CTATAAGTGAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA-GCGT--TTACAT
* * *
63255888 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGA-CGTTCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGAGCGTTTACAT
*
63255931 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
63255968 TGCCCAAATA
Statistics
Matches: 180, Mismatches: 29, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 10 0.06
44 1 0.01
45 9 0.05
46 85 0.47
47 54 0.30
48 10 0.06
49 1 0.01
50 10 0.06
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGAGCGTTTACAT
Found at i:63257645 original size:40 final size:40
Alignment explanation
Indices: 63257569--63257789 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
63257559 AACCCAAGTA
* * *
63257569 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
63257608 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
63257648 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGAACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
63257688 CCTTCGGGACATAGCCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63257728 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63257767 CCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
63257790 CATCCGAATT
Statistics
Matches: 158, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 119 0.75
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63261768 original size:13 final size:13
Alignment explanation
Indices: 63261752--63261795 Score: 88
Period size: 13 Copynumber: 3.4 Consensus size: 13
63261742 CTAGCACGAG
63261752 CGTGCGGCACGTC
1 CGTGCGGCACGTC
63261765 CGTGCGGCACGTC
1 CGTGCGGCACGTC
63261778 CGTGCGGCACGTC
1 CGTGCGGCACGTC
63261791 CGTGC
1 CGTGC
63261796 TCATCATCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.07, C:0.39, G:0.39, T:0.16
Consensus pattern (13 bp):
CGTGCGGCACGTC
Found at i:63262891 original size:12 final size:12
Alignment explanation
Indices: 63262861--63262900 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
63262851 TCAAAATGTG
63262861 CACTTGAGCTTA
1 CACTTGAGCTTA
63262873 C-CTTGAGCTTA
1 CACTTGAGCTTA
63262884 CACTTGAGCTTA
1 CACTTGAGCTTA
63262896 CACTT
1 CACTT
63262901 CGATGACCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.35
Consensus pattern (12 bp):
CACTTGAGCTTA
Found at i:63267788 original size:21 final size:21
Alignment explanation
Indices: 63267762--63267823 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
63267752 CACGCCTATA
63267762 GGGCTGACCGTGTGTCACACG
1 GGGCTGACCGTGTGTCACACG
* ** * *
63267783 GGGCTGAACGACATG-CCCATG
1 GGGCTGACCG-TGTGTCACACG
63267804 GGGCTGACCGTGTGTCACAC
1 GGGCTGACCGTGTGTCACAC
63267824 ATGGCGTAGA
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.18
Consensus pattern (21 bp):
GGGCTGACCGTGTGTCACACG
Found at i:63274228 original size:26 final size:26
Alignment explanation
Indices: 63274199--63274266 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
63274189 CCTGAAGATT
63274199 TATGCTCACACGAGCTGTGAAATGAG
1 TATGCTCACACGAGCTGTGAAATGAG
** *
63274225 TATGCTCACATTAGCTGTGAAATGGG
1 TATGCTCACACGAGCTGTGAAATGAG
** *
63274251 CCTACTCACACGAGCT
1 TATGCTCACACGAGCT
63274267 ATGGGTCGGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.25
Consensus pattern (26 bp):
TATGCTCACACGAGCTGTGAAATGAG
Found at i:63277944 original size:44 final size:43
Alignment explanation
Indices: 63277890--63278046 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
63277880 CTGTTTTGCG
* *
63277890 TGTAAAACCATGTCTAGGACATTGGCATCGACT-TCTG-TTTTA
1 TGTAAGACCATGTCTAGGACATTGGCATCGA-TATATGATTTTA
* *
63277932 TGTACAAGACCATGTCT-GAGACATTGGCTTCG-TATATGATTTTG
1 TGT--AAGACCATGTCTAG-GACATTGGCATCGATATATGATTTTA
* * * * **
63277976 TGTAAGACCCTGTCTAGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTTA
* * *
63278019 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTAGGACATTGGCAT
63278047 TGTATTTACT
Statistics
Matches: 91, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 26 0.29
43 35 0.38
44 30 0.33
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTTA
Found at i:63280379 original size:40 final size:40
Alignment explanation
Indices: 63280308--63280417 Score: 130
Period size: 40 Copynumber: 2.8 Consensus size: 40
63280298 ATTGAATGAT
* * * * *
63280308 ATCCGGGCTAAGGCCCGAAGACATTTATGCTAGTAATTAC
1 ATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
63280348 ATCCAGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* *
63280388 ATCCGGGCTAAGACCCGGAGGCATTTGTGC
1 ATCCAGGCTAAGACCCGAAGGCATTTGTGC
63280418 AAATTGTGAA
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:63285634 original size:39 final size:39
Alignment explanation
Indices: 63285591--63285733 Score: 223
Period size: 39 Copynumber: 3.7 Consensus size: 39
63285581 CGTAGTTTGT
* * *
63285591 GGACCTCAAGTCCAGATATATTTCCAGCATATAGCTTGC
1 GGACCTCATGTCCGGATATATTTCCAGCATATAGCCTGC
* *
63285630 GGACCTCATGTCCGGATATATTTCCAGTATATAGCCTGT
1 GGACCTCATGTCCGGATATATTTCCAGCATATAGCCTGC
*
63285669 AGACCTCATGTCCGGATATATTTCCAGCATATAGCCTGC
1 GGACCTCATGTCCGGATATATTTCCAGCATATAGCCTGC
*
63285708 GGACCTCATGTCCGGACATATTTCCA
1 GGACCTCATGTCCGGATATATTTCCA
63285734 ATCTTATATA
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 94 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (39 bp):
GGACCTCATGTCCGGATATATTTCCAGCATATAGCCTGC
Found at i:63286891 original size:2 final size:2
Alignment explanation
Indices: 63286884--63286939 Score: 51
Period size: 2 Copynumber: 28.0 Consensus size: 2
63286874 ACATCAAATC
** * *
63286884 TA TA TA TA TA TA TA TA TA TA TA GCC GA -A TA TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
*
63286926 TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA
63286940 GCCCATCAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (2 bp):
TA
Found at i:63287617 original size:24 final size:24
Alignment explanation
Indices: 63287585--63287632 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
63287575 AGAAAGAAAG
63287585 ATGAGTCTCCCTTATTTTTATTAT
1 ATGAGTCTCCCTTATTTTTATTAT
63287609 ATGAGTCTCCCTTATTTTTATTAT
1 ATGAGTCTCCCTTATTTTTATTAT
63287633 CTTTACCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.08, T:0.54
Consensus pattern (24 bp):
ATGAGTCTCCCTTATTTTTATTAT
Found at i:63294737 original size:40 final size:39
Alignment explanation
Indices: 63294572--63294755 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63294562 AAATTGAATG
* * *
63294572 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63294612 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63294652 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63294692 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63294731 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63294756 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63294780 original size:80 final size:81
Alignment explanation
Indices: 63294612--63294800 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63294602 GCTGGAAATT
* * * *
63294612 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63294677 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63294693 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63294756 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63294772 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63294801 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63308133 original size:31 final size:33
Alignment explanation
Indices: 63308071--63308134 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
63308061 GAGTTTGATC
*
63308071 ATATAGCACTAAGTGTGTGAGCTGAATATATAT
1 ATATAGCACTAAGTGTGGGAGCTGAATATATAT
*
63308104 ATATAGCACTAAGTGTGCGGA-CTCAATATAT
1 ATATAGCACTAAGTGTG-GGAGCTGAATATAT
63308135 GCTTTTGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (33 bp):
ATATAGCACTAAGTGTGGGAGCTGAATATATAT
Found at i:63310529 original size:40 final size:40
Alignment explanation
Indices: 63310411--63310586 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
63310401 CGGATGATAA
* * *
63310411 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
63310451 CCGGGCTATG-TCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
63310490 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
63310530 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
63310570 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
63310587 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 3 0.03
39 44 0.37
40 71 0.59
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:63310576 original size:79 final size:78
Alignment explanation
Indices: 63310411--63310586 Score: 239
Period size: 79 Copynumber: 2.2 Consensus size: 78
63310401 CGGATGATAA
* * *
63310411 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCGAAGGCATTTAT
1 CCGG-CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGCCCGAAGGCATTTAT
*
63310476 GCTAGTGATTATAT
65 GCGAGTGATTATAT
* *
63310490 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAG-CCCGAAGGCATTTA
63310555 TGCGAGTTG-TTATAT
64 TGCGAG-TGATTATAT
63310570 CCGGCTAA-ATCCCGAAG
1 CCGGCTAAGA-CCCGAAG
63310587 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.66
80 27 0.31
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGCCCGAAGGCATTTATG
CGAGTGATTATAT
Found at i:63310855 original size:22 final size:22
Alignment explanation
Indices: 63310815--63310856 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
63310805 GAATGTGCAT
*
63310815 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
63310837 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
63310857 TCAAAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:63314895 original size:26 final size:27
Alignment explanation
Indices: 63314866--63314920 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
63314856 AATATTATGC
63314866 TTATGGTTTATGC-ACCATACTAAGCA
1 TTATGGTTTATGCGACCATACTAAGCA
* *
63314892 TTATGGTTTATGCGAGCTTACTAAGCA
1 TTATGGTTTATGCGACCATACTAAGCA
63314919 TT
1 TT
63314921 CATTGCTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.38
Consensus pattern (27 bp):
TTATGGTTTATGCGACCATACTAAGCA
Found at i:63317575 original size:40 final size:40
Alignment explanation
Indices: 63317402--63317611 Score: 266
Period size: 40 Copynumber: 5.2 Consensus size: 40
63317392 GCTACTCGTT
* *
63317402 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
**
63317442 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
63317482 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
*
63317522 CAAATGCCTTCGGATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * * * *
63317562 CGAATGCCTTCGGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
63317603 CAAA-GCCTT
1 CAAATGCCTT
63317612 TGGGACTTAG
Statistics
Matches: 155, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.02
40 143 0.92
41 9 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:63319555 original size:48 final size:48
Alignment explanation
Indices: 63319472--63319563 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 48
63319462 ACCATGATTA
*
63319472 ATGAGATCCCATGTAAGACCATGGCTGAGACATGGCATCGGCATTGAT
1 ATGAGATCCCATGTAAGACCATAGCTGAGACATGGCATCGGCATTGAT
** * * * *
63319520 ATGAGATCCTGTGTAAGACCATATCTGGGATATGGCTTCGGCAT
1 ATGAGATCCCATGTAAGACCATAGCTGAGACATGGCATCGGCAT
63319564 CGTTAAGTGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 37 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (48 bp):
ATGAGATCCCATGTAAGACCATAGCTGAGACATGGCATCGGCATTGAT
Found at i:63319674 original size:90 final size:90
Alignment explanation
Indices: 63319580--63319744 Score: 224
Period size: 90 Copynumber: 1.8 Consensus size: 90
63319570 GTGATTTAGT
* * *
63319580 ATAAGGCCATGTCTGGGACATGGCATCGAA-ATGAGGTCCCATATAAGACCATGTCTGGGACATG
1 ATAAGACCATATCTGGGACATGGCAT-GAATATGAGGTCCCATATAAGACCATGTCTAGGACATG
*
63319644 GCATTGGCACCGATTCAAGACTTCAC
65 GCATTGACACCGATTCAAGACTTCAC
* * * * *
63319670 ATAAGACCATATCTGGGATATGGCATGAATGTGTGGTTCCATGTAAGACCATGTCTAGGACATGG
1 ATAAGACCATATCTGGGACATGGCATGAATATGAGGTCCCATATAAGACCATGTCTAGGACATGG
*
63319735 CTTTGACACC
66 CATTGACACC
63319745 CTACTTGGTG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
89 3 0.05
90 61 0.95
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (90 bp):
ATAAGACCATATCTGGGACATGGCATGAATATGAGGTCCCATATAAGACCATGTCTAGGACATGG
CATTGACACCGATTCAAGACTTCAC
Found at i:63323421 original size:54 final size:53
Alignment explanation
Indices: 63323303--63323478 Score: 176
Period size: 54 Copynumber: 3.3 Consensus size: 53
63323293 AGAATACTTT
* * * * *
63323303 AGTTTACCAAATTACTGAAATATCCTCAGTTGTAAAATTACCAAAGTACCTTT
1 AGTTTACAAAATTACTGAAATATCCTCACTTGTAAAATTATCAAAGTACCCTC
* * ** *
63323356 GGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATATCCTC-ACTTGTAAAATTATC-AAAGTACCCTC
* * *
63323410 AGTTTGCAAAATTACTGAAATACCCTCAACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATATCCTC-ACTTGTAAAATTATCAAAGTACCCTC
*
63323464 -GATTAACAAAATTAC
1 AG-TTTACAAAATTAC
63323479 CATTTTACCC
Statistics
Matches: 99, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
53 26 0.26
54 70 0.71
55 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
AGTTTACAAAATTACTGAAATATCCTCACTTGTAAAATTATCAAAGTACCCTC
Found at i:63323429 original size:27 final size:27
Alignment explanation
Indices: 63323311--63323463 Score: 109
Period size: 27 Copynumber: 5.7 Consensus size: 27
63323301 TTAGTTTACC
*
63323311 AAATTACTGAAATATCCTCAG-TTGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
* * ** *
63323337 AAATTAC-CAAAGTACCTTTGGTTTATA
1 AAATTACTGAAA-TACCCTCAGTTTGTA
** *
63323364 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
*
63323391 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-GAAATACCCTCAGTTTGTA
***
63323418 AAATTACTGAAATACCCTCAACATGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
*
63323445 AAATTA-TCAAAGTACCCTC
1 AAATTACTGAAA-TACCCTC
63323464 GATTAACAAA
Statistics
Matches: 100, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
25 3 0.03
26 17 0.17
27 74 0.74
28 6 0.06
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAGTTTGTA
Found at i:63323487 original size:27 final size:27
Alignment explanation
Indices: 63323457--63324170 Score: 505
Period size: 27 Copynumber: 26.4 Consensus size: 27
63323447 ATTATCAAAG
* *
63323457 TACCCTCGATTAACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
63323484 TACCCTCAATTTACAGAATTACTGCTT
1 TACCCTCGATTTACAAAATTACTATTT
63323511 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
63323538 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63323565 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* ** *
63323592 TACCCTTGATTTACAAAATTACCGTTC
1 TACCCTCGATTTACAAAATTACTATTT
* * *
63323619 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
***
63323646 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTATTT
* ** ***
63323673 TACCC-CTGGTTT-GTAAATTACTAAAA
1 TACCCTC-GATTTACAAAATTACTATTT
* ** **
63323699 TACCCCCTGATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTACAAAATTACT-ATTT
* * * ***
63323727 TACCCTCGACTGGTA-AAAACTACAAAAG
1 TACCCTCGA-T-TTACAAAATTACTATTT
* * *
63323755 TACCCTCGATTT-CTAGAATTATTGTTT
1 TACCCTCGATTTAC-AAAATTACTATTT
* * *
63323782 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
63323809 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
63323836 TACCCTCGATTTACAGAGTTAC-ATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63323862 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * ** *
63323889 TACCCTTGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAAAATTACTATTT
* * *
63323916 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
63323943 TACCATCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
***
63323970 TACCCTCGATTTA-ATAAATTACTAAAA
1 TACCCTCGATTTACA-AAATTACTATTT
* ** **
63323997 TACCC-CTGGTTTGTAAAATTACTA-AA
1 TACCCTC-GATTTACAAAATTACTATTT
** **
63324023 TACCCTCTGATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTACAAAATTACT-ATTT
* * ***
63324051 TACCCTCGACTGGTA-AAAATTACCAAAG
1 TACCCTCGA-T-TTACAAAATTACTATTT
* * * *
63324079 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
63324106 TATCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
63324133 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
63324160 TACCCTCGATT
1 TACCCTCGATT
63324171 GTGAAATTAC
Statistics
Matches: 563, Mismatches: 104, Indels: 40
0.80 0.15 0.06
Matches are distributed among these distances:
26 53 0.09
27 443 0.79
28 64 0.11
29 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:63323694 original size:26 final size:27
Alignment explanation
Indices: 63323660--63323731 Score: 110
Period size: 26 Copynumber: 2.7 Consensus size: 27
63323650 CTCGATTTAC
*
63323660 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCCTGATTTGT
63323687 -AAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATA-CCCCTGATTTGT
*
63323714 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
63323732 TCGACTGGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 14 0.34
27 14 0.34
28 13 0.32
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGATTTGT
Found at i:63323727 original size:28 final size:28
Alignment explanation
Indices: 63323660--63323731 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
63323650 CTCGATTTAC
*
63323660 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
63323687 -AAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
*
63323714 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
63323732 TCGACTGGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 14 0.34
27 11 0.27
28 16 0.39
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:63323745 original size:28 final size:27
Alignment explanation
Indices: 63323660--63323763 Score: 79
Period size: 28 Copynumber: 3.8 Consensus size: 27
63323650 CTCGATTTAC
** *
63323660 AAAATTACTAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTC-GACTGGT
* * *
63323687 -AAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCTC-GACTGGT
*
63323714 AAAATTACTGAAATACCCTCGACTGGT
1 AAAATTACTAAAATACCCTCGACTGGT
*
63323741 AAAAACTAC-AAAAGTACCCTCGA
1 -AAAATTACTAAAA-TACCCTCGA
63323764 TTTCTAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
26 17 0.26
27 16 0.24
28 33 0.50
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGACTGGT
Found at i:63323938 original size:324 final size:325
Alignment explanation
Indices: 63323457--63324170 Score: 1083
Period size: 324 Copynumber: 2.2 Consensus size: 325
63323447 ATTATCAAAG
* * * * * **
63323457 TACCCTCGATTAACAAAATTACCATTTTACCCTCAATTTACAGAATTACTGCTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* * *
63323522 TACAAAATTACTATTTTACCCTCGATTTACAGAGTTACTATTTTACCCTCGAATTACAAAATTAC
66 TACAAAATTACTATTTTACCCTCGAATTACAAAATTACTATTTTACCCTCGAATTACAAAATTAC
* * * * * *
63323587 TATTTTACCCTTGATTTACAAAATTACCGTTCTACCCTCGATTTATAGAATTACCATTTTACCCT
131 CATTCTACCCTCGATTTACAAAATTACCATTCTACCATCGATTTAGAGAATTACCATTTTACCCT
63323652 CGATTTACA-AAATTACTAAAATACCCCTGGTTTGT-AAATTACTAAAATACCCCCTGATTTGTA
196 CGATTTA-ATAAATTACTAAAATACCCCTGGTTTGTAAAATTACT-AAATACCCCCTGATTTGTA
*
63323715 AAATTACTGAAATACCCTCGACTGGTAAAAACTACAAAAGTACCCTCGATTTCTAGAATTATTGT
259 AAATTACTGAAATACCCTCGACTGGTAAAAACTACAAAAGTACCCTCGATTTATAGAATTATTGT
63323780 TT
324 TT
* *
63323782 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* * * * *
63323847 TACAGAGTTAC-ATTTTACCCTCGAATTACAAAATTACTATTTTACCCTTGATTTACAGAATTAC
66 TACAAAATTACTATTTTACCCTCGAATTACAAAATTACTATTTTACCCTCGAATTACAAAATTAC
* * * *
63323911 CGTTCTACCCTCGATTTATAGAATTACCATTTTACCATCGATTTAGAGAATTACCATTTTACCCT
131 CATTCTACCCTCGATTTACAAAATTACCATTCTACCATCGATTTAGAGAATTACCATTTTACCCT
*
63323976 CGATTTAATAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAATACCCTCTGATTTGTAAA
196 CGATTTAATAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAATACCCCCTGATTTGTAAA
* *
63324041 ATTACTGAAATACCCTCGACTGGTAAAAATTACCAAAGTACCCTCGATTTATAGAATTATTGTTT
261 ATTACTGAAATACCCTCGACTGGTAAAAACTACAAAAGTACCCTCGATTTATAGAATTATTGTTT
* * *
63324106 TATCCTCGATTTACAGAATTACTATTTTACCCTTGATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
63324171 GTGAAATTAC
Statistics
Matches: 351, Mismatches: 36, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
323 1 0.00
324 277 0.79
325 73 0.21
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (325 bp):
TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTACTATTTTACCCTCGAATTACAAAATTACTATTTTACCCTCGAATTACAAAATTAC
CATTCTACCCTCGATTTACAAAATTACCATTCTACCATCGATTTAGAGAATTACCATTTTACCCT
CGATTTAATAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAATACCCCCTGATTTGTAAA
ATTACTGAAATACCCTCGACTGGTAAAAACTACAAAAGTACCCTCGATTTATAGAATTATTGTTT
Found at i:63324069 original size:28 final size:26
Alignment explanation
Indices: 63324009--63324087 Score: 95
Period size: 28 Copynumber: 2.9 Consensus size: 26
63323999 CCCCTGGTTT
* *
63324009 GTAAAATTACTAAATACCCTCTGATTT
1 GTAAAATTACTAAATACCCTC-GACTG
63324036 GTAAAATTACTGAAATACCCTCGACTG
1 GTAAAATTACT-AAATACCCTCGACTG
*
63324063 GTAAAAATTACCAAAGTACCCTCGA
1 GT-AAAATTACTAAA-TACCCTCGA
63324088 TTTATAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 19 0.41
28 27 0.59
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (26 bp):
GTAAAATTACTAAATACCCTCGACTG
Found at i:63324220 original size:27 final size:27
Alignment explanation
Indices: 63324175--63324538 Score: 430
Period size: 27 Copynumber: 13.5 Consensus size: 27
63324165 TCGATTGTGA
* * *
63324175 AATTACTGAAATACGCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * ** *
63324202 AATTACCAAAACACCCCT-AATCTGTAA
1 AATTACCGAAATACCCCTGTA-GGGTAG
* *
63324229 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
63324256 AATTACTAAAATA-CCCTAGTCA-GGTAG
1 AATTACCGAAATACCCCT-GT-AGGGTAG
*
63324283 AATTACCG-AATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63324309 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
63324336 AATTACTGAAATACCTTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63324363 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63324390 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63324417 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63324444 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63324471 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
63324498 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63324525 ATTTACCGAGATAC
1 AATTACCGAAATAC
63324539 TTTGTGGGGT
Statistics
Matches: 289, Mismatches: 41, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.00
26 23 0.08
27 263 0.91
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:63324261 original size:324 final size:323
Alignment explanation
Indices: 63323608--63324245 Score: 817
Period size: 324 Copynumber: 2.0 Consensus size: 323
63323598 TGATTTACAA
* * *
63323608 AATTACCGTTCTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAA
1 AATTACCATTCTACCATCGATTTAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAA
63323673 TACCCCTGGTTTGTAAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACT
66 TACCCCTGGTTTGTAAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACT
* *
63323738 GGTAAAAACTACAAAAGTACCCTCGATTTCTAGAATTATTGTTTTACCCTCGATTTATAGAATTA
131 GGTAAAAACTACAAAAGTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAGAATTA
* * **
63323803 CTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAGTTACATTTTACCCT
196 CTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAGTTACATAATACCCT
** * **** * * **** **
63323868 CGAATTACAAAATTACTATTTTACCCTTGATTTACAGAATTACCGTTCTACCCTCGATTTATAG
261 C-AAGGACAAAATTACCAAAACACCCCTAATTTACAGAATTACCAAAATACCCTCGATGGATAG
*
63323932 AATTACCATTTTACCATCGATTTAGAGAATTACCATTTTACCCTCGATTTA-ATAAATTACTAAA
1 AATTACCATTCTACCATCGATTTAGAGAATTACCATTTTACCCTCGATTTACA-AAATTACTAAA
*
63323996 ATACCCCTGGTTTGTAAAATTACT-AAATACCCTCTGATTTGTAAAATTACTGAAATACCCTCGA
65 ATACCCCTGGTTTGT-AAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGA
* * *
63324060 CTGGTAAAAATTACCAAAGTACCCTCGATTTATAGAATTATTGTTTTATCCTCGATTTACAGAAT
129 CTGGTAAAAACTACAAAAGTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAGAAT
*
63324125 TACTATTTTACCCTTGATTTACAAAATTACCATTTTACCCTCGATTGTGA-A-A-TTAC-TGAAA
194 TACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT-T-ACAGAGTTACAT--AA
** *
63324186 TACGCCT-ATAGGGTAGAATTACCAAAACACCCCTAATCTGTA-A-AATTACCAAAATACCCT
255 TAC-CCTCA-AGGACAAAATTACCAAAACACCCCTAAT-T-TACAGAATTACCAAAATACCCT
63324246 TGTAGGGTAG
Statistics
Matches: 273, Mismatches: 31, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
322 1 0.00
323 6 0.02
324 248 0.91
325 15 0.05
326 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.35
Consensus pattern (323 bp):
AATTACCATTCTACCATCGATTTAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAA
TACCCCTGGTTTGTAAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACT
GGTAAAAACTACAAAAGTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAGAATTA
CTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAGTTACATAATACCCT
CAAGGACAAAATTACCAAAACACCCCTAATTTACAGAATTACCAAAATACCCTCGATGGATAG
Found at i:63324287 original size:134 final size:134
Alignment explanation
Indices: 63324175--63324531 Score: 400
Period size: 134 Copynumber: 2.7 Consensus size: 134
63324165 TCGATTGTGA
* * *
63324175 AATTACTGAAATACGCCTATAGGGTAGAATTACCAAAACACCCCTAAT-CTGTAAAATTACCAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAACA-CCCTAATACGGTAAAATTACCAAA
* * *
63324239 ATACCCTTGTAGGGTAGAATTACTAAAATACCCTAGTCA-GGTAGAATTACCGAATACCCTTGTA
65 ATACCCCTGTAGGGTAGAATTACCAAAATACCCTAGT-AGGGTAGAATTACCGAATACCCTCGTA
63324303 GGGTAG
129 GGGTAG
** * * * * * *
63324309 AATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCTTTATAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAACACCCTAATACGGTAAAATTACCAAAA
* *
63324374 TACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCC-CTGTA
66 TACCCCTGTAGGGTAGAATTACCAAAATACCCTAGTAGGGTAGAATTACCG-AATACCCTC-GTA
63324438 GGGTAG
129 GGGTAG
* * * * * * *
63324444 AATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATAC-CCCT-GTAGGGTAGAATTACTAA
1 AATTACCGAAATACCCCTATAGGGTAGAATTACC-AAA-ACACCCTAATACGGTAAAATTACCAA
* *
63324507 AATACCCCTGTAGGGTGGATTTACC
64 AATACCCCTGTAGGGTAGAATTACC
63324532 GAGATACTTT
Statistics
Matches: 189, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
133 6 0.03
134 93 0.49
135 84 0.44
136 5 0.03
137 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (134 bp):
AATTACCGAAATACCCCTATAGGGTAGAATTACCAAAACACCCTAATACGGTAAAATTACCAAAA
TACCCCTGTAGGGTAGAATTACCAAAATACCCTAGTAGGGTAGAATTACCGAATACCCTCGTAGG
GTAG
Found at i:63324981 original size:6 final size:6
Alignment explanation
Indices: 63324972--63325093 Score: 97
Period size: 6 Copynumber: 19.8 Consensus size: 6
63324962 TTGCATTCAC
* * *
63324972 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTA ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * * *
63325022 ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TCACCTG ATTCTA ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
63325071 ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
63325094 AGTTATGATA
Statistics
Matches: 93, Mismatches: 14, Indels: 18
0.74 0.11 0.14
Matches are distributed among these distances:
5 6 0.06
6 75 0.81
7 7 0.08
8 5 0.05
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:63325007 original size:31 final size:31
Alignment explanation
Indices: 63324972--63325093 Score: 101
Period size: 31 Copynumber: 4.0 Consensus size: 31
63324962 TTGCATTCAC
* *
63324972 ATTCTGATTCTGATTCTATTACCTGATACTG
1 ATTCTAATTCTGATTCTATTACCTGATTCTG
63325003 ATTCTAATTCTG-TTACCTAATT--CTGATTCTG
1 ATTCTAATTCTGATT--CT-ATTACCTGATTCTG
* * * * * *
63325034 GTTCTGATTTTGATTCTGTCACCTGATTCTA
1 ATTCTAATTCTGATTCTATTACCTGATTCTG
63325065 ATTCTAATTCTGATTCTGATT--CTGATTCT
1 ATTCTAATTCTGATTCT-ATTACCTGATTCT
63325094 AGTTATGATA
Statistics
Matches: 71, Mismatches: 13, Indels: 15
0.72 0.13 0.15
Matches are distributed among these distances:
29 1 0.01
30 12 0.17
31 50 0.70
32 5 0.07
33 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTAATTCTGATTCTATTACCTGATTCTG
Found at i:63325025 original size:19 final size:19
Alignment explanation
Indices: 63325000--63325069 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
63324990 TTACCTGATA
63325000 CTGATTCTAATTCTGTTAC
1 CTGATTCTAATTCTGTTAC
* *
63325019 CTAATTCTGATTCTGGTT--
1 CTGATTCTAATTCT-GTTAC
* * *
63325037 CTGATTTTGATTCTGTCAC
1 CTGATTCTAATTCTGTTAC
63325056 CTGATTCTAATTCT
1 CTGATTCTAATTCT
63325070 AATTCTGATT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 2 0.05
18 12 0.29
19 24 0.59
20 3 0.07
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.49
Consensus pattern (19 bp):
CTGATTCTAATTCTGTTAC
Found at i:63325039 original size:25 final size:25
Alignment explanation
Indices: 63324972--63325039 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
63324962 TTGCATTCAC
* *
63324972 ATTCTGATTCTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
* *
63324997 ATACTGATTCTAATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
63325022 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
63325040 ATTTTGATTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:63325041 original size:37 final size:37
Alignment explanation
Indices: 63325000--63325088 Score: 115
Period size: 37 Copynumber: 2.4 Consensus size: 37
63324990 TTACCTGATA
* * * **
63325000 CTGATTCTAATTCTGTTACCTAATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTCACCTAATTCTAATTCTAATT
* *
63325037 CTGATTTTGATTCTGTCACCTGATTCTAATTCTAATT
1 CTGATTCTGATTCTGTCACCTAATTCTAATTCTAATT
63325074 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
63325089 ATTCTAGTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATTCTAATTCTAATT
Done.