Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 211 of 328
Found at i:63327153 original size:54 final size:53
Alignment explanation
Indices: 63327037--63327211 Score: 190
Period size: 54 Copynumber: 3.3 Consensus size: 53
63327027 AATACTTTAG
* * * * ***
63327037 TTTACCAAATTACTGAAATATCCTC-AGTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATC-AAATACCCTCAA
* * *
63327090 TTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAATACCCTCAA
1 TTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATC-AAATACCCTCAA
* * * *
63327144 TTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTCAA
1 TTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAA-TACCCTCAA
63327198 TTTACAAAATTACC
1 TTTACAAAATTACC
63327212 ATTTTACCCT
Statistics
Matches: 101, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
53 24 0.24
54 77 0.76
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAATACCCTCAA
Found at i:63327179 original size:27 final size:27
Alignment explanation
Indices: 63327043--63327210 Score: 135
Period size: 27 Copynumber: 6.3 Consensus size: 27
63327033 TTAGTTTACC
* *
63327043 AAATTACTGAAATATCCTC-AGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * * *
63327069 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
63327096 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
63327123 AAATTA-TCGAAATACCCTCAATTTGCA
1 AAATTACT-GAAATACCCTCGATTTGTA
**
63327150 AAATTACTGAAATACCCTCGACATGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * **
63327177 AAATTA-TCAAAGTACCCTCAATTTACA
1 AAATTACTGAAA-TACCCTCGATTTGTA
63327204 AAATTAC
1 AAATTAC
63327211 CATTTTACCC
Statistics
Matches: 110, Mismatches: 27, Indels: 8
0.76 0.19 0.06
Matches are distributed among these distances:
26 19 0.17
27 90 0.82
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:63327219 original size:27 final size:27
Alignment explanation
Indices: 63327189--63327926 Score: 490
Period size: 27 Copynumber: 27.3 Consensus size: 27
63327179 ATTATCAAAG
* * *
63327189 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
63327216 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
63327243 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
63327270 TACCCTTGATTTATAGAGTTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
63327297 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * ** *
63327324 TACCCTTGTTTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACTATTT
* *
63327351 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
63327378 TTCCCTCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* ***
63327405 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAGAATTACTATTT
* * * **
63327432 TACCCCTAGTTTGTA-A-AATTACCCA-AA
1 TA-CCCTCGATT-TACAGAATTA-CTATTT
* ** * **
63327459 TACCCCCTGATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTACAGAATTACT-ATTT
* * * * ***
63327487 TACCATCGACTGGTA-AAAATTACCAAAG
1 TACCCTCGA-T-TTACAGAATTACTATTT
* * * *
63327515 TAGCCTCGATTTATAGAATTATTATAT
1 TACCCTCGATTTACAGAATTACTATTT
*
63327542 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
63327569 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
63327596 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
63327623 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* ** *
63327650 T-CCCTTGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACTATTT
* *
63327676 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
63327703 TACCCTCGATTTAGAGAATTACCA-TT
1 TACCCTCGATTTACAGAATTACTATTT
* ***
63327729 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAGAATTACTATTT
* * * ***
63327756 TACCCCTGGTTTGTA-A-AATTAATAAAA
1 TA-CCCTCGATT-TACAGAATTACTATTT
* * ** * **
63327783 CACCCCCTGATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTACAGAATTACT-ATTT
* * * * ***
63327811 TACCCTCAACTGGTA-AAAATTACCAAAG
1 TACCCTCGA-T-TTACAGAATTACTATTT
*
63327839 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
63327866 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * **
63327893 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
63327920 TACCCTC
1 TACCCTC
63327927 AATTGTGAAA
Statistics
Matches: 573, Mismatches: 115, Indels: 46
0.78 0.16 0.06
Matches are distributed among these distances:
26 55 0.10
27 432 0.75
28 79 0.14
29 7 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:63327474 original size:28 final size:27
Alignment explanation
Indices: 63327419--63327490 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 27
63327409 CTCGATTTAC
63327419 AAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCCTAGTTTGT
**
63327446 AAAATTACCCAAATACCCCCT-GATTTGT
1 AAAATTACTAAAATA-CCCCTAG-TTTGT
*
63327474 AAAATTACTGAAATACC
1 AAAATTACTAAAATACC
63327491 ATCGACTGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 16 0.41
28 23 0.59
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTAGTTTGT
Found at i:63327815 original size:28 final size:28
Alignment explanation
Indices: 63327743--63327815 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
63327733 CTCGATTTAC
*
63327743 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* *
63327770 AAAATTAATAAAACACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
*
63327798 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
63327816 TCAACTGGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 13 0.33
28 26 0.67
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:63328021 original size:324 final size:325
Alignment explanation
Indices: 63327117--63327930 Score: 972
Period size: 324 Copynumber: 2.5 Consensus size: 325
63327107 ATATCCTCGA
* * * * * * * *
63327117 TTTGTAAAATTATCGAAATACCCTC-AATTTGCAAAATTACTGAAATACCCTCGACAT-GT-AAA
1 TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAAC-TGGTAAAA
* * * * * * *
63327179 ATTATCAAAGTACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTT
65 ATTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTT
* ** * ** **
63327244 ACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTATAGAGTTACTATTTTACCCTCGAATT
130 ACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAGTTACTATAATACCCTCGAAGG
*** * * **** **
63327309 ACAAAATTACTATTTTA-CCCTTGTTTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTAC
195 ACAAAATTAC-A-AACACCCCTAGATTTACAGAATTACCAAAATACCCTCGATGGATAGAATTAC
*
63327373 CATTTTTCCCTCGATTTAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCC
258 CATTTTACCCTCGATTTAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCC
63327438 TAG
323 TAG
* * * *
63327441 TTTGTAAAATTACCCAAATACCCCCTGATTTGTAAAATTACTGAAATACCATCGACTGGTAAAAA
1 TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAACTGGTAAAAA
* * *
63327506 TTACCAAAGTAGCCTCGATTTATAGAATTATTATATTACCCTCGATTTACAGAATTACTGTTTTA
66 TTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTTA
* * ** **
63327571 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAGTTACTATTTTACCCTCGAATTA
131 CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAGTTACTATAATACCCTCGAAGGA
* **** * **** **
63327636 CAAAATTACTATTTTCCCTTGATTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTACCAT
196 CAAAATTACAAACACCCCTAGATTTACAGAATTACCAAAATACCCTCGATGGATAGAATTACCAT
*
63327701 TTTACCCTCGATTTAGAGAATTACCA-TTTACCCTCGATTTACAAAATTACTAAAATACCCCTGG
261 TTTACCCTCGATTTAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCCTAG
* *
63327765 TTTGTAAAATTAATAAAACACCCCCTGATTTGTAAAATTACTGAAATACCCTCAACTGGTAAAAA
1 TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAACTGGTAAAAA
*
63327830 TTACCAAAGTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTA
66 TTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTTA
* *
63327895 CCCTTGATTTACAAAATTACCGTTTTACCCTCAATT
131 CCCTCGATTTACAAAATTACCATTTTACCCTCAATT
63327931 GTGAAATTAC
Statistics
Matches: 450, Mismatches: 36, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
324 214 0.48
325 103 0.23
326 133 0.30
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (325 bp):
TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAACTGGTAAAAA
TTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTTA
CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAGTTACTATAATACCCTCGAAGGA
CAAAATTACAAACACCCCTAGATTTACAGAATTACCAAAATACCCTCGATGGATAGAATTACCAT
TTTACCCTCGATTTAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCCTAG
Found at i:63328047 original size:324 final size:324
Alignment explanation
Indices: 63327117--63328048 Score: 875
Period size: 324 Copynumber: 2.9 Consensus size: 324
63327107 ATATCCTCGA
* * * * * * * *
63327117 TTTGTAAAATTATCGAAATACCCTC-AATTTGCAAAATTACTGAAATACCCTCGACAT-GT-AAA
1 TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAAC-TGGTAAAA
* * * * * * *
63327179 ATTATCAAAGTACCCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTT
65 ATTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTT
* ** * ** **
63327244 ACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTATAGAGTTACTATTTTACCCTCGAATT
130 ACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAGTTACTATAATACCCTCGAAGG
*** * * **** **
63327309 ACAAAATTACTATTTTA-CCCTTGTTTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTAC
195 ACAAAATTAC-A-AACACCCCTAGATTTACAGAATTACCAAAATACCCTCGATGGATAGAATTAC
*** * * *
63327373 CATTTTTCCCTCGATTTAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCC
258 CAAAATACCCTC-AGTAAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCC
63327438 TAG
322 TAG
* * * *
63327441 TTTGTAAAATTACCCAAATACCCCCTGATTTGTAAAATTACTGAAATACCATCGACTGGTAAAAA
1 TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAACTGGTAAAAA
* * *
63327506 TTACCAAAGTAGCCTCGATTTATAGAATTATTATATTACCCTCGATTTACAGAATTACTGTTTTA
66 TTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTTA
* * ** **
63327571 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAGTTACTATTTTACCCTCGAATTA
131 CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAGTTACTATAATACCCTCGAAGGA
* **** * **** ** *
63327636 CAAAATTACTATTTTCCCTTGATTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTACCAT
196 CAAAATTACAAACACCCCTAGATTTACAGAATTACCAAAATACCCTCGATGGATAGAATTACCAA
** * * *
63327701 TTTACCCTCGATTTAGAGAATTACCA-TTTACCCTCGATTTACAAAATTACTAAAATACCCCTGG
261 AATACCCTC-AGTAAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCCTAG
* *
63327765 TTTGTAAAATTAATAAAACACCCCCTGATTTGTAAAATTACTGAAATACCCTCAACTGGTAAAAA
1 TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAACTGGTAAAAA
*
63327830 TTACCAAAGTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTA
66 TTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTTA
* * *
63327895 CCCTTGATTTACAAAATTACCGTTTTACCCTCAATTGTGA-A-A-TTACTGA-AATACCC-CTAT
131 CCCTCGATTTACAAAATTACCATTTTACCCTCAATT-T-ACAGAGTTACT-ATAATACCCTCGA-
** * * * *
63327955 AGGGTAGAATTACCAAAACACCCCTAGTTTGTA-A-AATTACCAAAATACCCTTG-TAGGGTAGA
192 AGGACAAAATTA-C-AAACACCCCTAGATT-TACAGAATTACCAAAATACCCTCGAT-GGATAGA
*
63328017 ATTACTAAAATACCCT-AGTAAGGTAGAATTAC
253 ATTACCAAAATACCCTCAGTAA-G-AGAATTAC
63328049 TAAAATACCC
Statistics
Matches: 529, Mismatches: 65, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
322 5 0.01
323 19 0.04
324 255 0.48
325 114 0.22
326 136 0.26
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.35
Consensus pattern (324 bp):
TTTGTAAAATTAACAAAACACCCCCTGATTTGTAAAATTACTGAAATACCATCAACTGGTAAAAA
TTACCAAAGTACCCTCGATTTATAGAATTACTATATTACCCTCGATTTACAGAATTACTATTTTA
CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAGTTACTATAATACCCTCGAAGGA
CAAAATTACAAACACCCCTAGATTTACAGAATTACCAAAATACCCTCGATGGATAGAATTACCAA
AATACCCTCAGTAAGAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCCTAG
Found at i:63328326 original size:27 final size:27
Alignment explanation
Indices: 63327935--63328326 Score: 457
Period size: 27 Copynumber: 14.5 Consensus size: 27
63327925 TCAATTGTGA
* *
63327935 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
63327962 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
63327989 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
63328016 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
**
63328043 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63328070 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
63328097 AATTACTGAAATACCTCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63328124 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63328151 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
63328178 AATTACTAAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63328205 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63328232 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63328259 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63328286 AATT-CCTAAAATACCCCTGTAGGGTGG
1 AATTACC-GAAATACCCCTGTAGGGTAG
* *
63328313 ATTTACCGAGATAC
1 AATTACCGAAATAC
63328327 TTTGTGGGGT
Statistics
Matches: 316, Mismatches: 43, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.02
27 302 0.96
28 7 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:63328628 original size:27 final size:26
Alignment explanation
Indices: 63328590--63328641 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
63328580 CTCGCTGCAA
*
63328590 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
63328617 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
63328642 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:63328684 original size:67 final size:67
Alignment explanation
Indices: 63328576--63328724 Score: 298
Period size: 67 Copynumber: 2.2 Consensus size: 67
63328566 AGCGTTTTGA
63328576 CAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCT
1 CAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCT
63328641 GG
66 GG
63328643 CAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCT
1 CAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCT
63328708 GG
66 GG
63328710 CAGCCTCGCTGCAAT
1 CAGCCTCGCTGCAAT
63328725 TTCTGTGGTG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 82 1.00
ACGTcount: A:0.18, C:0.30, G:0.22, T:0.30
Consensus pattern (67 bp):
CAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCT
GG
Found at i:63328695 original size:27 final size:26
Alignment explanation
Indices: 63328657--63328708 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
63328647 CTCGCTGCAA
*
63328657 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
63328684 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
63328709 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:63328835 original size:6 final size:6
Alignment explanation
Indices: 63328826--63328947 Score: 106
Period size: 6 Copynumber: 19.8 Consensus size: 6
63328816 TTGCATTCAC
* * *
63328826 ATTCTG ATTCTG ATTCTG -TTACCTT ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
63328876 ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
63328925 ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
63328948 AGTTATGATA
Statistics
Matches: 93, Mismatches: 14, Indels: 18
0.74 0.11 0.14
Matches are distributed among these distances:
5 5 0.05
6 77 0.83
7 7 0.08
8 4 0.04
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:63328857 original size:25 final size:25
Alignment explanation
Indices: 63328829--63328893 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
63328819 CATTCACATT
*
63328829 CTGATTCTGATTCTGTTACCTTATA
1 CTGATTCTGATTCTGTTACCTAATA
*
63328854 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
63328879 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
63328894 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:63328864 original size:31 final size:31
Alignment explanation
Indices: 63328826--63328936 Score: 111
Period size: 31 Copynumber: 3.6 Consensus size: 31
63328816 TTGCATTCAC
* *
63328826 ATTCTGATTCTGATTCTGTTACCTTATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
*
63328857 ATTCTGATTCTG-TTACCTAATT--CTGATTCTG
1 ATTCTGATTCTGATT--CT-GTTACCTGATTCTG
* * *
63328888 GTTCTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
*
63328919 ATTCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
63328937 ATTCTGATTC
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
29 1 0.02
30 4 0.06
31 53 0.83
32 4 0.06
33 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:63328895 original size:37 final size:37
Alignment explanation
Indices: 63328854--63328942 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
63328844 TTACCTTATA
* **
63328854 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
* *
63328891 CTGATTTTGATTCTGTCACCTGATTCTGATTCTAATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
63328928 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
63328943 ATTCTAGTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT
Found at i:63328903 original size:18 final size:18
Alignment explanation
Indices: 63328826--63328947 Score: 106
Period size: 19 Copynumber: 6.6 Consensus size: 18
63328816 TTGCATTCAC
63328826 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
* *
63328844 -TTACCTTATACTGATTCTG
1 ATT--CTGATTCTGATTCTG
*
63328863 ATTCTG-TTACCTAATTCTG
1 ATTCTGATT--CTGATTCTG
* *
63328882 ATTCTGGTTCTGATTTTG
1 ATTCTGATTCTGATTCTG
*
63328900 ATTCTG-TCACCTGATTCTG
1 ATTCTGAT--TCTGATTCTG
*
63328919 ATTCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
63328937 ATTCTGATTCT
1 ATTCTGATTCT
63328948 AGTTATGATA
Statistics
Matches: 83, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
17 4 0.05
18 34 0.41
19 40 0.48
20 5 0.06
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:63328956 original size:12 final size:12
Alignment explanation
Indices: 63328914--63328956 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
63328904 TGTCACCTGA
*
63328914 TTCTGATTCTAA
1 TTCTGATTCTAG
63328926 TTCTGATTCT-G
1 TTCTGATTCTAG
63328937 ATTCTGATTCTAG
1 -TTCTGATTCTAG
*
63328950 TTATGAT
1 TTCTGAT
63328957 AATGTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 26 0.96
13 1 0.04
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.51
Consensus pattern (12 bp):
TTCTGATTCTAG
Found at i:63328965 original size:24 final size:24
Alignment explanation
Indices: 63328911--63328972 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
63328901 TTCTGTCACC
* **
63328911 TGATTCTGATTCTAATTCTGATTC
1 TGATTCTGATTCTAATTATGATAA
*
63328935 TGATTCTGATTCTAGTTATGATAA
1 TGATTCTGATTCTAATTATGATAA
* *
63328959 TGTTTCTTATTCTA
1 TGATTCTGATTCTA
63328973 TAATGGGTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.52
Consensus pattern (24 bp):
TGATTCTGATTCTAATTATGATAA
Found at i:63331458 original size:26 final size:26
Alignment explanation
Indices: 63331427--63331507 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
63331417 AACACACCAA
* *
63331427 TATCACAGCAAGGCTACCAGTAATAG
1 TATCACAGCAAAGCTACCAGTAACAG
*
63331453 TATCACAGCAAAGCTACTAGTAACAG
1 TATCACAGCAAAGCTACCAGTAACAG
* *
63331479 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCACAGCAAAGCTACCAGTAACAG
63331505 TAT
1 TAT
63331508 ATGTGGCGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (26 bp):
TATCACAGCAAAGCTACCAGTAACAG
Found at i:63332516 original size:30 final size:31
Alignment explanation
Indices: 63332436--63332518 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
63332426 TCAGTCTCGA
63332436 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
63332466 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
63332497 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
63332519 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 17 0.33
31 34 0.67
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:63332772 original size:25 final size:25
Alignment explanation
Indices: 63332738--63332807 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
63332728 CTCTTTTAAT
63332738 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
63332763 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
63332788 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
63332808 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:63333764 original size:27 final size:27
Alignment explanation
Indices: 63333734--63333841 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
63333724 GAAAATCTAC
63333734 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
63333761 AAACCAACGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
63333787 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
63333817 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
63333842 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:63333839 original size:56 final size:54
Alignment explanation
Indices: 63333731--63333900 Score: 157
Period size: 54 Copynumber: 3.1 Consensus size: 54
63333721 TTGGAAAATC
* * *
63333731 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAACGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAA-CAGCGGTATTT-TGGTAATTTT
* * *
63333786 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAA-CAGCGGTATTTTGGTAATTTT
** * *** *
63333841 TACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAAC-AGCGGTATTTTGGTAATTTT
63333895 TACAAA
1 TACAAA
63333901 CTAGGGGTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 45 0.46
55 14 0.14
56 37 0.38
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACAGCGGTATTTTGGTAATTTT
Found at i:63333847 original size:27 final size:27
Alignment explanation
Indices: 63333783--63333953 Score: 129
Period size: 27 Copynumber: 6.3 Consensus size: 27
63333773 TTTCTATAAT
* *
63333783 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
63333811 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
63333838 TTTTACAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* *
63333865 TTTCACAAA-CTAGTGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
63333892 TTTTACAAA-CTAGGGGTATTTTGGT-A
1 TTTTACAAATC-AGGGGTATTTTGGTAA
** *
63333918 TTTCTACCTTAT-AGGGGTATTTTAGTAA
1 TTT-TA-CAAATCAGGGGTATTTTGGTAA
*
63333946 TTTCACAA
1 TTTTACAA
63333954 TCGATGGGTA
Statistics
Matches: 116, Mismatches: 19, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
26 7 0.06
27 95 0.82
28 14 0.12
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:63333937 original size:54 final size:54
Alignment explanation
Indices: 63333796--63333953 Score: 153
Period size: 54 Copynumber: 2.9 Consensus size: 54
63333786 TAGAAAGTCA
* *** *
63333796 AGGGTATTTCTGTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTCACAAACT-AGGGGTATTTTGGTAATTTTACAAATAG
*
63333850 AGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA-TAG
* ** * *
63333905 -GGGTATTTTGGT-ATTTCTACCTTA-TAGGGGTATTTTAGTAATTTCACAA
1 AGGGTATTTCGGTAATTTC-A-CAAACTAGGGGTATTTTGGTAATTTTACAA
63333954 TCGATGGGTA
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
53 5 0.06
54 78 0.89
55 5 0.06
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAATAG
Found at i:63333989 original size:27 final size:27
Alignment explanation
Indices: 63333952--63334044 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
63333942 GTAATTTCAC
* *
63333952 AATCGATGGGTAAAACGGTAATTTTATA
1 AATCGA-GGGTAAAACAGTAATTCTATA
* * *
63333980 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
63334007 AATCAATGGTAAAACAGTGATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
63334034 AATCGAGGGTA
1 AATCGAGGGTA
63334045 CTTTGGTAAT
Statistics
Matches: 52, Mismatches: 13, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
27 47 0.90
28 5 0.10
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:63333990 original size:54 final size:53
Alignment explanation
Indices: 63333932--63334066 Score: 128
Period size: 54 Copynumber: 2.5 Consensus size: 53
63333922 TACCTTATAG
* * * * *
63333932 GGGTATTTTAGTAATTTCACAATCGATGGGTAAAACGGTAATTTTATAAATTGA
1 GGGTAATTTAGTAATTTTACAATCGAT-GGTAAAACAGTAATTCTATAAATCGA
** * *
63333986 GGGTAAAATAGTAATTCTGTA-AATCAATGGTAAAACAGTGATTCTATAAATCGA
1 GGGTAATTTAGTAATT-T-TACAATCGATGGTAAAACAGTAATTCTATAAATCGA
* *
63334040 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAATTTAGTAATTTTACAA-TCGA
63334067 GGGCATTTCT
Statistics
Matches: 63, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 50 0.79
55 7 0.11
56 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (53 bp):
GGGTAATTTAGTAATTTTACAATCGATGGTAAAACAGTAATTCTATAAATCGA
Found at i:63335151 original size:27 final size:26
Alignment explanation
Indices: 63335081--63335154 Score: 112
Period size: 26 Copynumber: 2.8 Consensus size: 26
63335071 GGTGTTACAG
63335081 GTCATTTACCCTTGAGGGGTAAAATA
1 GTCATTTACCCTTGAGGGGTAAAATA
63335107 GTCATTTACCCTTGAGGGGTAAAATA
1 GTCATTTACCCTTGAGGGGTAAAATA
* * *
63335133 GTTATTTTACCATTTAGGGGTA
1 GTCA-TTTACCCTTGAGGGGTA
63335155 TTTTGGTCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 29 0.66
27 15 0.34
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (26 bp):
GTCATTTACCCTTGAGGGGTAAAATA
Found at i:63340743 original size:50 final size:50
Alignment explanation
Indices: 63340651--63340899 Score: 277
Period size: 50 Copynumber: 5.0 Consensus size: 50
63340641 ATTCAGACAC
* * * * *
63340651 ATAGGTATGTACATATGTGATGTTGTATTGGATCTTGAATATTCGGCCAT
1 ATAGGTAAGTACATATGTGATATTATATTTGATCTTGCATATTCGGCCAT
* * * *
63340701 GA-AGGTATGTACAAATTTGATATTATATTTGAAT-TTGTATATTCGGCCAT
1 -ATAGGTAAGTACATATGTGATATTATATTTG-ATCTTGCATATTCGGCCAT
* * * * *
63340751 CTAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGGCTAT
1 ATAGGTAAGTACATATGTGATATTATATTTGATCTTGCATATTCGGCCAT
* * *
63340801 ATAGTTAAGCACATATGTGATATTAAATTTGATCTTGCATATTCGGCCAT
1 ATAGGTAAGTACATATGTGATATTATATTTGATCTTGCATATTCGGCCAT
* * * *
63340851 ATAGGTAAGCACATATGTGCTATTATATTTGATCTTGTATATTTGGCCA
1 ATAGGTAAGTACATATGTGATATTATATTTGATCTTGCATATTCGGCCA
63340900 AATGAGTGAT
Statistics
Matches: 169, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
49 2 0.01
50 164 0.97
51 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (50 bp):
ATAGGTAAGTACATATGTGATATTATATTTGATCTTGCATATTCGGCCAT
Found at i:63346157 original size:129 final size:129
Alignment explanation
Indices: 63345927--63346184 Score: 471
Period size: 129 Copynumber: 2.0 Consensus size: 129
63345917 GCTAAATTGT
63345927 ATGTTTCTCAGATTGTGAGACTACACGAAGTACCTATTTCTACTGTGTCAGATAGAGATCCGAGA
1 ATGTTTCTCAGATTGTGAGACTACACGAAGTACCTATTTCTACTGTGTCAGATAGAGATCCGAGA
63345992 TTTACATCACAGTTTTAGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
66 TTTACATCACAGTTTTAGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
* * * *
63346056 ATGTTTCTCAGATTGTGAGACTACATGGAGTACCTATTTCTATTGTGTCAGATAGAGATCTGAGA
1 ATGTTTCTCAGATTGTGAGACTACACGAAGTACCTATTTCTACTGTGTCAGATAGAGATCCGAGA
*
63346121 TTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
66 TTTACATCACAGTTTTAGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
63346185 CTTTTCATCC
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 124 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (129 bp):
ATGTTTCTCAGATTGTGAGACTACACGAAGTACCTATTTCTACTGTGTCAGATAGAGATCCGAGA
TTTACATCACAGTTTTAGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
Found at i:63346295 original size:17 final size:17
Alignment explanation
Indices: 63346273--63346309 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
63346263 AGTTCCAAGG
63346273 TACGTGGGAATGATATT
1 TACGTGGGAATGATATT
63346290 TACGTGGGAATGATATT
1 TACGTGGGAATGATATT
63346307 TAC
1 TAC
63346310 CTTTGGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (17 bp):
TACGTGGGAATGATATT
Found at i:63348660 original size:50 final size:50
Alignment explanation
Indices: 63348513--63348778 Score: 259
Period size: 50 Copynumber: 5.3 Consensus size: 50
63348503 GCTAAATGAC
* ** * * * *
63348513 CTTGTATATTTGGCCGCATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * *
63348563 CTTGAATATTCGGCCATGA-AGGTATGTACAAATGAGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGTACATATGTGATATTATATTTG-AT
* * * *
63348614 -TTGTATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * *
63348663 CTT-TCATATTCGTCTATATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGT-ATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * * *
63348713 CTTGCATATTCAGCCATATAGGTAAGCACATATGTGCTATTATATTTGAC
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
*
63348763 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
63348779 AATGAGTGAT
Statistics
Matches: 177, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
49 4 0.02
50 170 0.96
51 3 0.02
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
Found at i:63350496 original size:43 final size:43
Alignment explanation
Indices: 63350399--63350500 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
63350389 ATCGAGATGT
* * * *
63350399 GATTACATGTAAGACCATGTCTGGGACTTTGGTATTATATTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCATATTAA
*
63350442 GATTACATGTAAGACCATGTTTGGGACATTGGCATCAT-TATAA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCATAT-TAA
* *
63350485 GATTTCGTGTAAGACC
1 GATTACATGTAAGACC
63350501 CTATCTAGGA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCATATTAA
Found at i:63352920 original size:7 final size:7
Alignment explanation
Indices: 63352908--63352933 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
63352898 ATCGGTGGTA
63352908 CATAAGT
1 CATAAGT
63352915 CATAAGT
1 CATAAGT
63352922 CATAAGT
1 CATAAGT
63352929 CATAA
1 CATAA
63352934 ACAGTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (7 bp):
CATAAGT
Found at i:63365318 original size:24 final size:22
Alignment explanation
Indices: 63365275--63365319 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
63365265 ACAGGTGTAT
63365275 GCCTAGGCTGTGTGTGACACAC
1 GCCTAGGCTGTGTGTGACACAC
63365297 GCCTAGG-TCGTGTGTGACACAC
1 GCCTAGGCT-GTGTGTGACACAC
63365319 G
1 G
63365320 GGCCCCACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (22 bp):
GCCTAGGCTGTGTGTGACACAC
Found at i:63366412 original size:45 final size:45
Alignment explanation
Indices: 63366347--63366509 Score: 254
Period size: 45 Copynumber: 3.6 Consensus size: 45
63366337 CATTGGCATT
* * *
63366347 TAGCCTGCTAGGCTCAAAGGCGTGAATAGTATCTCACCAGCATCA
1 TAGCCTGCTAGGCTCAAAGGCCTGAATAGTATTTCACCGGCATCA
* *
63366392 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGCATCA
1 TAGCCTGCTAGGCTCAAAGGCCTGAATAGTATTTCACCGGCATCA
*
63366437 TAGCCTGCTAGGCTCGAAGGCCTGAATAGTATTTCACCGGCATCA
1 TAGCCTGCTAGGCTCAAAGGCCTGAATAGTATTTCACCGGCATCA
* *
63366482 CAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TAGCCTGCTAGGCTCAAAGGCCTGAATA
63366510 ATACTGTACG
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 109 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.21
Consensus pattern (45 bp):
TAGCCTGCTAGGCTCAAAGGCCTGAATAGTATTTCACCGGCATCA
Found at i:63373555 original size:85 final size:83
Alignment explanation
Indices: 63373416--63373575 Score: 234
Period size: 85 Copynumber: 1.9 Consensus size: 83
63373406 CACCGGCATT
*
63373416 TAGCCTACTAGGCTCGAAGCCCGATATCATTTCACCAGCATTATAGCCTACTAGGCTCGAAGGCC
1 TAGCCTACTAGGCTCGAAGCCCGATATCATTTCACCAGCATCATAGCCTACTAGGCTCGAAGGCC
63373481 CGAATAGTATCTCACCGA
66 CGAATAGTATCTCACCGA
* * *
63373499 TAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATTTCA-CAGGCATCATAGCCTGCTAGGCTTGAA
1 TAGCCTACTAGGCTCGAA-GCCCG-ATA-TCATTTCACCA-GCATCATAGCCTACTAGGCTCGAA
63373562 GGCCCGAATAGTAT
62 GGCCCGAATAGTAT
63373576 TTACCGGCAT
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
83 17 0.25
84 7 0.10
85 44 0.64
86 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (83 bp):
TAGCCTACTAGGCTCGAAGCCCGATATCATTTCACCAGCATCATAGCCTACTAGGCTCGAAGGCC
CGAATAGTATCTCACCGA
Found at i:63373563 original size:45 final size:44
Alignment explanation
Indices: 63373416--63373609 Score: 224
Period size: 45 Copynumber: 4.5 Consensus size: 44
63373406 CACCGGCATT
* *
63373416 TAGCCTACTAGGCTCGAA-GCCCG-ATA-TCATTTCACCAGCATTA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATTTCA-CAGCATCA
* * *
63373459 TAGCCTACTAGGCTCGAAGGCCCGAATAGTATCTCAC--C--GA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACAGCATCA
63373499 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACAGGCATCA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACA-GCATCA
* *
63373544 TAGCCTGCTAGGCTTGAAGGCCCGAATAGTATTT-ACCGGCATCA
1 TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCA-CAGCATCA
*
63373588 TAGCCTGCTAGGCTCAAAGGCC
1 TAGCCTGCTAGGCTCGAAGGCC
63373610 TGAGTGGTGT
Statistics
Matches: 133, Mismatches: 9, Indels: 17
0.84 0.06 0.11
Matches are distributed among these distances:
40 36 0.27
42 1 0.01
43 19 0.14
44 33 0.25
45 43 0.32
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (44 bp):
TAGCCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACAGCATCA
Found at i:63377981 original size:22 final size:23
Alignment explanation
Indices: 63377953--63378003 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
63377943 TGGAAACGAG
*
63377953 AAGCTCTATT-GAGCT-ATACATT
1 AAGCTCT-TTCGAGCTGATACAGT
*
63377975 AAGCTCTTTCGAGCTGATTCAGT
1 AAGCTCTTTCGAGCTGATACAGT
63377998 AAGCTC
1 AAGCTC
63378004 ACACAAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 12 0.48
23 11 0.44
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (23 bp):
AAGCTCTTTCGAGCTGATACAGT
Found at i:63378003 original size:23 final size:22
Alignment explanation
Indices: 63377903--63378003 Score: 64
Period size: 24 Copynumber: 4.3 Consensus size: 22
63377893 ACATGGCCAA
*
63377903 TAAGCTCATAATGAGCTGATAACAG
1 TAAGCTC-TATTGAGCT-AT-ACAG
*
63377928 TAAGCT-TGATTGAGCTGGAAACGAG
1 TAAGCTCT-ATTGAGCT--ATAC-AG
*
63377953 -AAGCTCTATTGAGCTATACAT
1 TAAGCTCTATTGAGCTATACAG
*
63377974 TAAGCTCT-TTCGAGCTGATTCAG
1 TAAGCTCTATT-GAGCT-ATACAG
63377997 TAAGCTC
1 TAAGCTC
63378004 ACACAAACTA
Statistics
Matches: 63, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
21 3 0.05
22 15 0.24
23 12 0.19
24 22 0.35
25 11 0.17
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (22 bp):
TAAGCTCTATTGAGCTATACAG
Found at i:63378787 original size:43 final size:43
Alignment explanation
Indices: 63378736--63378821 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
63378726 CAAAAACGTA
* *
63378736 GAAATCATTAAAAACGAATCAAAATCGTTCCTTAATTGCTCCC
1 GAAATCATTAAAAACGAATCAAAAACGTACCTTAATTGCTCCC
*
63378779 GAAATCATTAAAAACGAGTCAAAAACGTACCTTAATTGCTCCC
1 GAAATCATTAAAAACGAATCAAAAACGTACCTTAATTGCTCCC
63378822 TCAAGCCTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.26
Consensus pattern (43 bp):
GAAATCATTAAAAACGAATCAAAAACGTACCTTAATTGCTCCC
Found at i:63390187 original size:39 final size:41
Alignment explanation
Indices: 63390133--63390272 Score: 225
Period size: 40 Copynumber: 3.5 Consensus size: 41
63390123 AACCCAAGTA
* *
63390133 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
63390172 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
63390212 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
63390252 CTTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
63390273 GTCATCCGAA
Statistics
Matches: 95, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
39 14 0.15
40 78 0.82
41 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:63391897 original size:40 final size:40
Alignment explanation
Indices: 63391852--63391980 Score: 131
Period size: 40 Copynumber: 3.2 Consensus size: 40
63391842 CGGAATATAA
*
63391852 CCGGATATAAG-CATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCCAT-AGCACAAATGCCTTCGGGTCTTAGC
* * * *
63391892 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCCATAGCACAAATGCCTTCGGGTCTTAGC
* * *
63391932 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCCA-TAGCACAAATGCCTTCGGGTCTTAGC
63391972 CCGG-TATAA
1 CCGGATATAA
63391981 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
38 2 0.03
39 3 0.04
40 65 0.89
41 2 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAAGCCATAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63399886 original size:40 final size:40
Alignment explanation
Indices: 63399841--63400007 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
63399831 CGGAATATAA
63399841 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
63399881 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63399921 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
63399961 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
63400000 CCGGATAT
1 CCGGATAT
63400008 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63399991 original size:80 final size:79
Alignment explanation
Indices: 63399857--63400005 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
63399847 ATAACCACGT
*
63399857 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
63399922 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
63399937 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
63400000 CCGGAT
64 CCGGAT
63400006 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:63403065 original size:28 final size:28
Alignment explanation
Indices: 63402996--63403093 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
63402986 GACAAGATTG
* * * *
63402996 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63403026 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
63403054 GCACTAAGTGTGCGAG--TGAATACATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63403080 TCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63403094 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
26 21 0.34
28 22 0.36
30 18 0.30
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63403091 original size:26 final size:27
Alignment explanation
Indices: 63403025--63403093 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
63403015 AAAATTGTAC
* *
63403025 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGAATACAT
63403053 AGCACTAAGTGTGCGAG-TGAATACAT
1 AGCACTAAGTGTGCGAGTTGAATACAT
*
63403079 ATCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63403094 GATTCACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 21 0.55
28 17 0.45
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATACAT
Found at i:63411006 original size:28 final size:28
Alignment explanation
Indices: 63410937--63411037 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63410927 GACAAGATTG
* * * *
63410937 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63410967 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63410995 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63411024 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63411038 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63416548 original size:26 final size:26
Alignment explanation
Indices: 63416517--63416571 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
63416507 AACACACCAA
* *
63416517 TATCGCAGCAAGGCTACCAGTAATAG
1 TATCGCAACAAAGCTACCAGTAATAG
*
63416543 TATCGCAACAAAGCTTCCAGTAATAG
1 TATCGCAACAAAGCTACCAGTAATAG
63416569 TAT
1 TAT
63416572 TATAGCAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (26 bp):
TATCGCAACAAAGCTACCAGTAATAG
Found at i:63416580 original size:26 final size:26
Alignment explanation
Indices: 63416523--63416624 Score: 87
Period size: 26 Copynumber: 3.9 Consensus size: 26
63416513 CCAATATCGC
* * *
63416523 AGCAAGGCTACCAGTAATAGTATCGC
1 AGCAAAGCTACCAGTAATAGTATTGT
* * *
63416549 AACAAAGCTTCCAGTAATAGTATTAT
1 AGCAAAGCTACCAGTAATAGTATTGT
** *
63416575 AGCAAAGCTGGCAGTAACAGTATATGT
1 AGCAAAGCTACCAGTAATAGTAT-TGT
* * *
63416602 GGCAAAGCCACCAGAAATAGTAT
1 AGCAAAGCTACCAGTAATAGTAT
63416625 ATGTGGCGAA
Statistics
Matches: 58, Mismatches: 17, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
26 39 0.67
27 19 0.33
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.22
Consensus pattern (26 bp):
AGCAAAGCTACCAGTAATAGTATTGT
Found at i:63417161 original size:8 final size:8
Alignment explanation
Indices: 63417150--63417176 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
63417140 AAGGCCATCC
63417150 TTTCGGCT
1 TTTCGGCT
63417158 TTTCGGCT
1 TTTCGGCT
63417166 TTTCGGCT
1 TTTCGGCT
63417174 TTT
1 TTT
63417177 GTTGATCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.56
Consensus pattern (8 bp):
TTTCGGCT
Found at i:63420169 original size:25 final size:25
Alignment explanation
Indices: 63420140--63420187 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63420130 TTGTAACATG
* * *
63420140 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63420165 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63420188 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63420271 original size:11 final size:11
Alignment explanation
Indices: 63420235--63420290 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
63420225 CATGGTATGT
63420235 ATGATATGCAC
1 ATGATATGCAC
* *
63420246 ATGACATG--T
1 ATGATATGCAC
63420255 ATGATATGCAC
1 ATGATATGCAC
*
63420266 ATGATATG--T
1 ATGATATGCAC
63420275 ATGATATGCAC
1 ATGATATGCAC
63420286 ATGAT
1 ATGAT
63420291 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63420290 original size:20 final size:20
Alignment explanation
Indices: 63420224--63420290 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
63420214 ATTTTGATAA
*
63420224 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63420244 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63420264 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63420284 ACATGAT
1 ACATGAT
63420291 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63420409 original size:47 final size:48
Alignment explanation
Indices: 63420339--63420506 Score: 254
Period size: 47 Copynumber: 3.6 Consensus size: 48
63420329 GGTGGAAGTG
63420339 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
63420387 AAAAA-GGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
**
63420434 -AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* * *
63420480 AAAAAGGGTTTTTG-CCTAGTTATTAAA
1 AAAAAGGGCTTATGCCCCAGTTATTAAA
63420507 AGAGGCTAGG
Statistics
Matches: 109, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
46 16 0.15
47 88 0.81
48 5 0.05
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (48 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:63420507 original size:23 final size:24
Alignment explanation
Indices: 63420340--63420527 Score: 224
Period size: 23 Copynumber: 8.0 Consensus size: 24
63420330 GTGGAAGTGA
63420340 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63420364 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
63420387 AAAAAGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63420411 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
**
63420434 AAAAGGGCTTACACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63420458 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
63420481 AAAAGGGTTTTTG-CCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63420504 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63420528 ATGATAAAGC
Statistics
Matches: 137, Mismatches: 21, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
23 77 0.56
24 53 0.39
25 7 0.05
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:63425208 original size:21 final size:20
Alignment explanation
Indices: 63425165--63425222 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
63425155 TGCGTTTGAG
* *
63425165 TGTATTGATTGTAGTTCTAT
1 TGTATTGATTGTAATTCCAT
*
63425185 TGTAGTTGATTGTAATTCCCT
1 TGTA-TTGATTGTAATTCCAT
* *
63425206 TGTCTTGGATTATAATT
1 TGTATT-GATTGTAATT
63425223 TCCCTGAGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.21, C:0.09, G:0.19, T:0.52
Consensus pattern (20 bp):
TGTATTGATTGTAATTCCAT
Found at i:63433691 original size:27 final size:27
Alignment explanation
Indices: 63433661--63433927 Score: 419
Period size: 27 Copynumber: 9.9 Consensus size: 27
63433651 TTTCTAAAAC
*
63433661 TACCATTTTACCCTCGATTTACAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
63433688 TACCGTTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
63433715 TACCATTTTACCCTCGATTTACAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
63433742 TACCATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
* * *
63433769 TACCGTTTTACCTTTGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
63433796 TACCATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
* *
63433823 TAACGTTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
* *
63433850 TACCATTTTACCCTCAATTTACAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
63433877 TCCCATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
63433904 TA-CAGTTTTACCCTCGATTTATAG
1 TACCA-TTTTACCCTCGATTTATAG
63433928 TCGATTTATA
Statistics
Matches: 218, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 2 0.01
27 216 0.99
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCATTTTACCCTCGATTTATAGAAT
Found at i:63433719 original size:54 final size:54
Alignment explanation
Indices: 63433661--63434025 Score: 453
Period size: 54 Copynumber: 6.6 Consensus size: 54
63433651 TTTCTAAAAC
* * *
63433661 TACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
* *
63433715 TACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
* *
63433769 TACCGTTTTACCTTTGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
* * *
63433823 TAACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
* *
63433877 TCCCATTTTACCCTCGATTTATAGAATTA-CAGTTTTACCCTCGATTTATAGTCGATTTATAGAA
1 TACCGTTTTACCCTCGATTTATAGAATTACCA-TTTTA-CC-C---------TCGATTTATAGAA
63433941 T
54 T
* *
63433942 TATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
* * * *
63433996 TACTGTTTTACCCTCAATTTACAAAATTAC
1 TACCGTTTTACCCTCGATTTATAGAATTAC
63434026 TAAAATACTC
Statistics
Matches: 274, Mismatches: 24, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
53 2 0.01
54 221 0.81
55 2 0.01
56 1 0.00
63 1 0.00
64 2 0.01
65 43 0.16
66 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
Found at i:63433768 original size:81 final size:81
Alignment explanation
Indices: 63433661--63434025 Score: 462
Period size: 81 Copynumber: 4.4 Consensus size: 81
63433651 TTTCTAAAAC
*
63433661 TACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
63433726 CCTCGATTTACAGAAT
66 CCTCGATTTACAGAAT
* *
63433742 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCTTTGATTTATAGAATTACCATTTTAC
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
*
63433807 CCTCGATTTATAGAAT
66 CCTCGATTTACAGAAT
* * * * * *
63433823 TAACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTCCCATTTTAC
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
*
63433888 CCTCGATTTATAGAAT
66 CCTCGATTTACAGAAT
*
63433904 TA-CAGTTTTACCCTCGATTTATAGTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAA
1 TACCA-TTTTA-CC-C---------TCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAA
63433968 TTACCATTTTACCCTCGATTTACAGAAT
54 TTACCATTTTACCCTCGATTTACAGAAT
** * * *
63433996 TACTGTTTTACCCTCAATTTACAAAATTAC
1 TACCATTTTACCCTCGATTTATAGAATTAC
63434026 TAAAATACTC
Statistics
Matches: 246, Mismatches: 25, Indels: 26
0.83 0.08 0.09
Matches are distributed among these distances:
80 1 0.00
81 170 0.69
82 2 0.01
83 1 0.00
90 1 0.00
91 2 0.01
92 69 0.28
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTAC
CCTCGATTTACAGAAT
Found at i:63433933 original size:38 final size:38
Alignment explanation
Indices: 63433890--63433965 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
63433880 CATTTTACCC
63433890 TCGATTTATAGAATTA-CAGTTTTACCCTCGATTTATAG
1 TCGATTTATAGAATTATC-GTTTTACCCTCGATTTATAG
63433928 TCGATTTATAGAATTATCGTTTTACCCTCGATTTATAG
1 TCGATTTATAGAATTATCGTTTTACCCTCGATTTATAG
63433966 AATTACCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 36 0.97
39 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (38 bp):
TCGATTTATAGAATTATCGTTTTACCCTCGATTTATAG
Found at i:63433955 original size:92 final size:92
Alignment explanation
Indices: 63433836--63434016 Score: 290
Period size: 92 Copynumber: 2.0 Consensus size: 92
63433826 CGTTTTACCC
* *
63433836 TCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTCCCATTTTACCCTCGATTTATAG
1 TCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAG
*
63433901 AATTACAGTTTTACCCTCGATTTATAG
66 AATTACAGTTTTACCCTCAATTTATAG
* * * *
63433928 TCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAG
1 TCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAG
*
63433993 AATTACTGTTTTACCCTCAATTTA
66 AATTACAGTTTTACCCTCAATTTA
63434017 CAAAATTACT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 81 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (92 bp):
TCGATTTATAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTACAG
AATTACAGTTTTACCCTCAATTTATAG
Found at i:63433956 original size:119 final size:119
Alignment explanation
Indices: 63433809--63434025 Score: 362
Period size: 119 Copynumber: 1.8 Consensus size: 119
63433799 CATTTTACCC
63433809 TCGATTTATAGAATTAACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
1 TCGATTTATAGAATTAACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
* * * *
63433874 AATTCCCATTTTACCCTCGATTTATAGAATTACAGTTTTACCCTCGATTTATAG
66 AATTACCATTTTACCCTCAATTTACAAAATTACAGTTTTACCCTCGATTTATAG
* *
63433928 TCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAG
1 TCGATTTATAGAATTAACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
**
63433993 AATTACTGTTTTACCCTCAATTTACAAAATTAC
66 AATTACCATTTTACCCTCAATTTACAAAATTAC
63434026 TAAAATACTC
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 90 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.41
Consensus pattern (119 bp):
TCGATTTATAGAATTAACGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
AATTACCATTTTACCCTCAATTTACAAAATTACAGTTTTACCCTCGATTTATAG
Found at i:63434026 original size:27 final size:27
Alignment explanation
Indices: 63433928--63434026 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
63433918 CGATTTATAG
*
63433928 TCGATTTATAGAATTA-TCGTTTTACCC
1 TCGATTTACAGAATTACT-GTTTTACCC
* **
63433955 TCGATTTATAGAATTACCATTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
63433982 TCGATTTACAGAATTACTGTTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
* *
63434009 TCAATTTACAAAATTACT
1 TCGATTTACAGAATTACT
63434027 AAAATACTCT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
TCGATTTACAGAATTACTGTTTTACCC
Found at i:63434062 original size:146 final size:146
Alignment explanation
Indices: 63433784--63434067 Score: 363
Period size: 146 Copynumber: 1.9 Consensus size: 146
63433774 TTTTACCTTT
* *
63433784 GATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTAACGTTTTACCCTCGATTTATAGAA
1 GATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTAACATTTTACCCTCGATTTACAGAA
* * *** * * ***
63433849 TTACCATTTTACCCTCAATTTACAGAATTCCCATTTTACCCTCGATTTATAGAATTACAGTTTTA
66 TTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACAGAAATA
63433914 CCCTCGATTTATAGTC
131 CCCTCGATTTATAGTC
* * *
63433930 GATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAA
1 GATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTAACATTTTACCCTCGATTTACAGAA
** * * * *
63433995 TTACTGTTTTACCCTCAATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTATCA-AAAT
66 TTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATTTACAAAATTA-CAGAAAT
63434059 ACCCTCGAT
130 ACCCTCGAT
63434068 CAGTAAAATT
Statistics
Matches: 116, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
146 114 0.98
147 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.39
Consensus pattern (146 bp):
GATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTAACATTTTACCCTCGATTTACAGAA
TTACCATTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACAGAAATA
CCCTCGATTTATAGTC
Found at i:63434179 original size:27 final size:27
Alignment explanation
Indices: 63434018--63434251 Score: 177
Period size: 27 Copynumber: 8.7 Consensus size: 27
63434008 CTCAATTTAC
* * * **
63434018 AAAATTACTAAAATACTCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGATTTGT
* * **
63434045 AAAATTATCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTTGATTTGT
*
63434072 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGA-TTTGT
* * *
63434099 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* **
63434126 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
63434153 AAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* ** * **
63434180 GAAATTGTCAAAATACTCTCAATTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * **
63434207 AAAA-TATCGAAATACCCCTTG-TAGGAT
1 AAAATTACCAAAATA-CCCTTGATTTG-T
*
63434234 AGAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
63434252 CTGTAGGGTA
Statistics
Matches: 164, Mismatches: 38, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
26 11 0.07
27 145 0.88
28 8 0.05
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTGT
Found at i:63434179 original size:54 final size:54
Alignment explanation
Indices: 63434018--63434195 Score: 203
Period size: 54 Copynumber: 3.3 Consensus size: 54
63434008 CTCAATTTAC
* * * ** * * **
63434018 AAAATTACTAAAATACTCTTGGTTTACAAAATTATCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGT
* * * *
63434072 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGT
*
63434126 AAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGT
* **
63434180 GAAATTGTCAAAATAC
1 AAAATTACCAAAATAC
63434196 TCTCAATTTG
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGT
Found at i:63434185 original size:81 final size:81
Alignment explanation
Indices: 63434018--63434170 Score: 218
Period size: 81 Copynumber: 1.9 Consensus size: 81
63434008 CTCAATTTAC
* * *
63434018 AAAATTACTAAAATACTCTTGGTTTACAAAATTATCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
63434083 AATACCCCTAGTTTGT
66 AATACCCCTAGTTTGT
** * * *
63434099 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCT-TGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
63434163 AAATACCC
65 AAATACCC
63434171 TTGATTTGTG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 57 0.90
82 6 0.10
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
AATACCCCTAGTTTGT
Found at i:63434207 original size:54 final size:54
Alignment explanation
Indices: 63434018--63434253 Score: 199
Period size: 54 Copynumber: 4.4 Consensus size: 54
63434008 CTCAATTTAC
* * * * ** * * **
63434018 AAAATTACTAAAATACTCTTGGTTTACAAAATTATCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGT
* * *
63434072 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGT
* *
63434126 AAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGT
* ** * * * * **
63434180 GAAATTGTCAAAATA-CTCTCAATTTGTAAAA-TATCGAAATACCCCTTG-TAGGAT
1 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATA-CCCTTGATTTG-T
*
63434234 AGAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
63434254 GTAGGGTAGA
Statistics
Matches: 144, Mismatches: 34, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 13 0.09
54 128 0.89
55 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGT
Found at i:63434263 original size:27 final size:27
Alignment explanation
Indices: 63434214--63434455 Score: 310
Period size: 27 Copynumber: 9.0 Consensus size: 27
63434204 TGTAAAATAT
*
63434214 CGAAATACCCCTTGTAGGATAGAATTAC
1 CGAAATACCCC-TGTAGGGTAGAATTAC
* *
63434242 CAAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
63434269 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
63434296 TGAAATAACCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
63434323 CGAAATACCCCTGTTGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
63434350 TGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
63434377 CGAAATACCCTTGTAGGGTAGAAGTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
63434404 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
63434431 CGAGATA-CCCT-T-GGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
63434455 C
1 C
63434456 ATTTTGCCCC
Statistics
Matches: 189, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
24 12 0.06
25 1 0.01
26 3 0.02
27 163 0.86
28 10 0.05
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:63434696 original size:25 final size:25
Alignment explanation
Indices: 63434658--63434727 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
63434648 AGGAAGTGCT
* *
63434658 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
63434683 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
63434708 AAAAGGGCTTTACTCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
63434728 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:63443944 original size:23 final size:22
Alignment explanation
Indices: 63443913--63443961 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
63443903 CATGCAGAGA
*
63443913 TCCAATCCAACCATCCTCTACAC
1 TCCAATCCAACCAGCC-CTACAC
* *
63443936 TCCACTCCACCCAGCCCTACAC
1 TCCAATCCAACCAGCCCTACAC
63443958 TCCA
1 TCCA
63443962 TGTATGGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.27, C:0.53, G:0.02, T:0.18
Consensus pattern (22 bp):
TCCAATCCAACCAGCCCTACAC
Found at i:63451199 original size:40 final size:40
Alignment explanation
Indices: 63451105--63451249 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
63451095 TACTCGAATG
*
63451105 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63451146 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63451186 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
63451226 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63451250 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63460115 original size:37 final size:37
Alignment explanation
Indices: 63460073--63460153 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
63460063 CGGGGTTTTA
* * *
63460073 ACCCGGATAAAATCTCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCACCGGGTCTT
*
63460110 ACCCGGACAGAATCTCCACACGTAGTCACCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCACCGGGTCTT
63460147 ACCCGGA
1 ACCCGGA
63460154 ATATGTTTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.20
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCACCGGGTCTT
Found at i:63460427 original size:48 final size:48
Alignment explanation
Indices: 63460312--63460437 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
63460302 TATGGCACAA
* * *
63460312 TAGCCATTCGGCTTTACCAAATATACATCTCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
63460360 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
63460408 TAGCCATTCGGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
63460438 ATTTACCTTG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
Found at i:63464304 original size:40 final size:40
Alignment explanation
Indices: 63464246--63464507 Score: 301
Period size: 40 Copynumber: 6.6 Consensus size: 40
63464236 AAATACACAT
*
63464246 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* * *
63464286 CATCGGCACGAATACCCTTCGGGATTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* *
63464326 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACAT
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
** * *
63464366 CACTAGAACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* * * * * *
63464406 CACCGGTACGAATGCCTTTTGGGACTTAGCCCGAATACAT
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
*** * *
63464446 CACTACCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
** *
63464486 CACTAGCACGATTG-CCTTCGGG
1 CACCGGCACGAATGCCCTTCGGG
63464508 CTTTGTGACA
Statistics
Matches: 188, Mismatches: 34, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
39 7 0.04
40 181 0.96
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
Found at i:63464386 original size:80 final size:80
Alignment explanation
Indices: 63464246--63464507 Score: 348
Period size: 80 Copynumber: 3.3 Consensus size: 80
63464236 AAATACACAT
* * * * * *
63464246 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACA-TCGGCACGAATACCCTTCGGGA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACT-AGCACGAATGCTCTTCGGGA
*
63464310 TTTAGCCCGGATATAA
65 CTTAGCCCGGATATAA
*
63464326 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGAACGAATGCTCTTCGGGAC
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
63464391 TTAGCCCGGATATAA
66 TTAGCCCGGATATAA
* * * * *
63464406 CACCGGTACGAATGCCTTTTGGGACTTAGCCCGAATACATCACTACCACGAATGCTCTTCGGGAC
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
*
63464471 TTAGCCCGGATATAT
66 TTAGCCCGGATATAA
** *
63464486 CACTAGCACGATTG-CCTTCGGG
1 CACCGGCACGAATGCCCTTCGGG
63464508 CTTTGTGACA
Statistics
Matches: 160, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 6 0.04
80 153 0.96
81 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (80 bp):
CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
TTAGCCCGGATATAA
Found at i:63464456 original size:120 final size:119
Alignment explanation
Indices: 63464253--63464507 Score: 339
Period size: 120 Copynumber: 2.1 Consensus size: 119
63464243 CATCACCGGC
* * *
63464253 ACGAATGCCCTTCGGGATTTAGCCCGGATATAACATCGGCACGAATACCCTTCGGGATTTAGCCC
1 ACGAATG-CCTTCGGGACTTAGCCCGGATATAACACCGGCACGAATACCCTTCGGGACTTAGCCC
* * **
63464318 GGATATAACACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGA
65 GAATACAACACCACCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGA
* * * *
63464373 ACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCGGTACGAATGCCTTTTGGGACTTAGCCC
1 ACGAATGC-CTTCGGGACTTAGCCCGGATATAACACCGGCACGAATACCCTTCGGGACTTAGCCC
* * * * *
63464438 GAATACATCACTACCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
65 GAATACAACACCACCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGA
*
63464493 ACGATTGCCTTCGGG
1 ACGAATGCCTTCGGG
63464508 CTTTGTGACA
Statistics
Matches: 117, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
119 8 0.07
120 109 0.93
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (119 bp):
ACGAATGCCTTCGGGACTTAGCCCGGATATAACACCGGCACGAATACCCTTCGGGACTTAGCCCG
AATACAACACCACCACGAATGCCCTTCGGGACTTAGCCCGGATACATCACTAGA
Found at i:63466751 original size:40 final size:40
Alignment explanation
Indices: 63466706--63466873 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
63466696 CGGAATGCAA
63466706 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * * *
63466746 CCGGATATAACGACTCGCACAAATGCCTTCGGATATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* ** *
63466786 CCGGATATAACAACTTGAACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
** *
63466826 CCGGATATAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
63466866 CCGGATAT
1 CCGGATAT
63466874 CATTCAATTG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 107 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:63466846 original size:80 final size:80
Alignment explanation
Indices: 63466706--63466873 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 80
63466696 CGGAATGCAA
* * *
63466706 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGAACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
63466771 CCTTCGGATATTAGC
66 CCTTCGGATATTAAC
** * *
63466786 CCGGATATAACAACTTGAACGAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAATT
1 CCGGATATAACAACACGAACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
* *
63466850 GCCTTCGGGTCTTAAC
65 GCCTTCGGATATTAAC
63466866 CCGGATAT
1 CCGGATAT
63466874 CATTCAATTG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 76 0.99
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACACGAACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGATATTAAC
Found at i:63466979 original size:124 final size:125
Alignment explanation
Indices: 63466830--63467055 Score: 319
Period size: 124 Copynumber: 1.8 Consensus size: 125
63466820 CTTAGCCCGG
* * * * * *
63466830 ATATAGTCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATCATTCAATTGCTCATGCACAC
1 ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
* *
63466895 ATACATCAATAATCATTACACATTCAT-GTTTCATTTTCGTTACTAAGGCTCAAACACAA
66 ATACATCAATAATCATTACACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
* * *
63466954 ATATAATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACAC
1 ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
* * *
63467019 GTATATCAGTAATCATTACACATCCATAATTTCATTT
66 ATACATCAATAATCATTACACATCCATAATTTCATTT
63467056 CACATAATTC
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
124 79 0.91
125 8 0.09
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (125 bp):
ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
ATACATCAATAATCATTACACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
Found at i:63469486 original size:29 final size:28
Alignment explanation
Indices: 63469384--63469486 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
63469374 GTGACAAGAT
*
63469384 TGGCACTAAGTGTGCAAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
**
63469413 TGGCACTAAGTGTGCGAATTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
63469442 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
63469471 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63469487 TGATCGATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.06
29 58 0.92
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:63472775 original size:40 final size:40
Alignment explanation
Indices: 63472729--63472936 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
63472719 CGGAATACAA
*
63472729 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
63472769 TCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
63472809 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
63472849 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * * *
63472889 CCGGATATAATTACTAGCATAAACGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
63472929 CCGGATAT
1 CCGGATAT
63472937 CATTCAATTG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:63476482 original size:37 final size:37
Alignment explanation
Indices: 63476440--63476520 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
63476430 CGGGGTTTTA
* *
63476440 ACCCGGATAAAATCTCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
*
63476477 ACCCGGACAGAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
63476514 ACCCGGA
1 ACCCGGA
63476521 ATATATTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
Found at i:63476792 original size:48 final size:48
Alignment explanation
Indices: 63476677--63476802 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
63476667 GTATGCACAA
* * *
63476677 TAGCCATTCGGCTTTACCAAATATACATCTCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
63476725 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
63476773 TAGCCATTCGGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
63476803 TTACCTTGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
Found at i:63480160 original size:40 final size:40
Alignment explanation
Indices: 63480066--63480210 Score: 195
Period size: 40 Copynumber: 3.6 Consensus size: 40
63480056 TACTCGAATG
*
63480066 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63480107 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* *
63480147 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
63480186 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGTCCCGAAGGC
63480211 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
39 2 0.02
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63481890 original size:43 final size:43
Alignment explanation
Indices: 63481840--63481990 Score: 212
Period size: 43 Copynumber: 3.5 Consensus size: 43
63481830 TATCCCAGAT
* * * * *
63481840 ATGGTCTTACATGTTATAACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACACGTAATCACATAACGATGCCAATGTCCTAGAC
* * *
63481883 AGGGTCTTACACGAAATCATATAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAATCACATAACGATGCCAATGTCCTAGAC
*
63481926 ATGGTCTTACACGTAATCATATAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAATCACATAACGATGCCAATGTCCTAGAC
*
63481969 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
63481991 CTCGATAACC
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 96 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATAACGATGCCAATGTCCTAGAC
Found at i:63487298 original size:28 final size:28
Alignment explanation
Indices: 63487258--63487360 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
63487248 ATTGCATGAG
* * *
63487258 TATGAATGTGATTGGGCCTGACGAGCCA
1 TATGAATGAGATTGGGCCTGATGGGCCA
* * *
63487286 TATGAAAGTGATTGGGCCTGATGGGTCA
1 TATGAATGAGATTGGGCCTGATGGGCCA
* *
63487314 TATGAATGAGATTGGGCCCGATGGGCTA
1 TATGAATGAGATTGGGCCTGATGGGCCA
63487342 TATGAATGAGATTGGGCCT
1 TATGAATGAGATTGGGCCT
63487361 AAAGGGGCCA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.27
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTGATGGGCCA
Found at i:63489944 original size:40 final size:40
Alignment explanation
Indices: 63489857--63489994 Score: 188
Period size: 40 Copynumber: 3.4 Consensus size: 40
63489847 ATGATATTCA
* *
63489857 GGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACTATATCCG
*
63489898 GACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTATATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACTATATCCG
* * *
63489938 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCG
*
63489978 GGCTAAGACCCGAAGGC
1 GGCTAAGTCCCGAAGGC
63489995 CTTGTGCGAG
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.72
41 22 0.25
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCG
Found at i:63495811 original size:29 final size:29
Alignment explanation
Indices: 63495769--63495826 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
63495759 TAATATATGA
*
63495769 ATATTTTATTTTTAGTTCGAAAATAACAC
1 ATATTTTATTTTTAGTTCAAAAATAACAC
63495798 ATATTTTATTTTTAGTTCAAAAATAACAC
1 ATATTTTATTTTTAGTTCAAAAATAACAC
63495827 CAAATCCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (29 bp):
ATATTTTATTTTTAGTTCAAAAATAACAC
Found at i:63498769 original size:25 final size:26
Alignment explanation
Indices: 63498740--63498819 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
63498730 CCCCACATAT
63498740 ATACTGATACTGGCAGCTTTG-TGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* *
63498765 ATACTGCTACTGCCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
* *
63498791 TTACTGATACTAGCAGCTTTGCTGCG
1 ATACTGATACTGGCAGCTTTGCTGCG
63498817 ATA
1 ATA
63498820 TTGGTGTGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 19 0.40
26 28 0.60
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCG
Found at i:63501798 original size:29 final size:29
Alignment explanation
Indices: 63501763--63501984 Score: 329
Period size: 29 Copynumber: 7.7 Consensus size: 29
63501753 ATAAACGATC
*** *
63501763 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
63501792 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
63501821 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
63501850 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
** * *
63501879 TCGCACACTTAGTGCCATA-CCTTCCAAGC
1 TCGCACACTTAGTGCCATATAATT-TAAGT
*
63501908 CCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
63501937 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
63501966 TCGCACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
63501985 CCTTCCAAGC
Statistics
Matches: 173, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
28 2 0.01
29 169 0.98
30 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:63501866 original size:87 final size:87
Alignment explanation
Indices: 63501763--63502011 Score: 365
Period size: 87 Copynumber: 2.9 Consensus size: 87
63501753 ATAAACGATC
*** * * * ***
63501763 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATT-TAAGTTTGCAC
1 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATA-AATTCCAAGCCCGCAC
63501827 ACTTAGTGCCATATAATTTAAGT
65 ACTTAGTGCCATATAATTTAAGT
**
63501850 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATACCTTCCAAGCCCGCACA
1 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATAAATTCCAAGCCCGCACA
63501915 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
**
63501937 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATACCTTCCAAGCCCGCACA
1 TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATAAATTCCAAGCCCGCACA
63502002 CTTAGTGCCA
66 CTTAGTGCCA
63502012 ATCTTGTCAC
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
86 2 0.01
87 148 0.99
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (87 bp):
TCGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATAAATTCCAAGCCCGCACA
CTTAGTGCCATATAATTTAAGT
Found at i:63501999 original size:29 final size:29
Alignment explanation
Indices: 63501764--63502011 Score: 230
Period size: 29 Copynumber: 8.6 Consensus size: 29
63501754 TAAACGATCT
*** * *
63501764 CGCACACTTAGTGCCATGCGATTTAAGCT
1 CGCACACTTAGTGCCATATAATTCAAGCC
* * **
63501793 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTCAAGCC
* * **
63501822 TGCACACTTAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTCAAGCC
* **
63501851 CGCACACTTAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTCAAGCC
**
63501880 CGCACACTTAGTGCCATA-CCTTCCAAGCC
1 CGCACACTTAGTGCCATATAATT-CAAGCC
* **
63501909 CGCACACTTAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTCAAGCC
* **
63501938 CGCACACTTAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATATAATTCAAGCC
**
63501967 CGCACACTTAGTGCCATA-CCTTCCAAGCC
1 CGCACACTTAGTGCCATATAATT-CAAGCC
63501996 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63502012 ATCTTGTCAC
Statistics
Matches: 193, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
28 4 0.02
29 187 0.97
30 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAATTCAAGCC
Found at i:63508640 original size:39 final size:40
Alignment explanation
Indices: 63508582--63508747 Score: 198
Period size: 39 Copynumber: 4.2 Consensus size: 40
63508572 CGGAATACAA
* *
63508582 CCGGATATAACCACACGCACGAATGCCTT-GGGTCTTAGC
1 CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
* *
63508621 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
* *
63508661 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
* *
63508700 CCGGATA-AA-GTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACG--ACTCGCACGAA-TGCCTTCGGGTCTTAGC
63508740 CCGGATAT
1 CCGGATAT
63508748 CATTCAATTG
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
38 4 0.04
39 55 0.50
40 51 0.46
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACGACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:63508720 original size:79 final size:79
Alignment explanation
Indices: 63508582--63508747 Score: 221
Period size: 79 Copynumber: 2.1 Consensus size: 79
63508572 CGGAATACAA
* *
63508582 CCGGATATAACCACACGCACGAATGCCTTGGGTCTTAGCCCGGATATAACGACTCGCACAAATGC
1 CCGGATATAACAACACGCACGAATGCCTTGGGTCTTAGCCCGGATATAACGACTAGCACAAATGC
*
63508647 CTTCGGGTATTAGC
66 CTTCGGGTATTAAC
** *
63508661 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG-CCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTT-GGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
63508723 TGCCTTCGGGTCTTAAC
63 TGCCTTCGGGTATTAAC
63508740 CCGGATAT
1 CCGGATAT
63508748 CATTCAATTG
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 2 0.03
79 65 0.84
80 9 0.12
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (79 bp):
CCGGATATAACAACACGCACGAATGCCTTGGGTCTTAGCCCGGATATAACGACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:63518555 original size:40 final size:40
Alignment explanation
Indices: 63518470--63518620 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
63518460 AATTGAATGA
* * * *
63518470 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
63518510 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
63518551 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
63518590 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63518621 ACATGTTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:63518604 original size:80 final size:80
Alignment explanation
Indices: 63518471--63518620 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
63518461 ATTGAATGAT
* *
63518471 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
63518536 TGTGCTAGTGGCTAC
66 TGTGCTAGTGGCTAC
* * * *
63518551 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
63518614 TTTGTGC
64 ATTGTGC
63518621 ACATGTTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 4 0.07
80 57 0.93
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:63519987 original size:549 final size:549
Alignment explanation
Indices: 63518949--63520046 Score: 2178
Period size: 549 Copynumber: 2.0 Consensus size: 549
63518939 AATGCTTACC
63518949 CCGTTGCTTTGGCTCTCTGTTTTATAGATTTCGCTCGATAGCAATCGGATTCGGGATCAATAAAG
1 CCGTTGCTTTGGCTCTCTGTTTTATAGATTTCGCTCGATAGCAATCGGATTCGGGATCAATAAAG
63519014 TCGAAGTCATCCACACTATCAACGTCTCTATTTTGGTATAAATTTTTGGTTGAACTTTGAAATGG
66 TCGAAGTCATCCACACTATCAACGTCTCTATTTTGGTATAAATTTTTGGTTGAACTTTGAAATGG
63519079 CATGTATAGGACTACCCCTTGTTGGTTAAATATGTTGTGATGTATTTGTGTACGGCCATGCGAAA
131 CATGTATAGGACTACCCCTTGTTGGTTAAATATGTTGTGATGTATTTGTGTACGGCCATGCGAAA
63519144 ATGGCTCGTAAAAGGAAGCATGAACTTAGACTATTTGTGGTTTGTATGTATATATATGGTGTCAT
196 ATGGCTCGTAAAAGGAAGCATGAACTTAGACTATTTGTGGTTTGTATGTATATATATGGTGTCAT
63519209 GATGTGATTATGGATTGGAAATGGGAGTGTTGGTCACATGATCAGCCATTGGTATGGTTAAAATG
261 GATGTGATTATGGATTGGAAATGGGAGTGTTGGTCACATGATCAGCCATTGGTATGGTTAAAATG
63519274 ATCATATATGAACCTATGTATGGCAAGACTAGTTGGTTCATGGAGACTACCAAATAGGTAAGACC
326 ATCATATATGAACCTATGTATGGCAAGACTAGTTGGTTCATGGAGACTACCAAATAGGTAAGACC
*
63519339 TACTTTAAAAACAGATGCTGCCAGCTGCAGTGACGTGAATGTGAAAAATCACCAAAATTTGTAGG
391 TACCTTAAAAACAGATGCTGCCAGCTGCAGTGACGTGAATGTGAAAAATCACCAAAATTTGTAGG
*
63519404 AATGGTATTAAATAGTGAATAAGCTATTTAAATGAACCTTGATGAGTCTATTTTCATATGGAAGA
456 AATGGTATTAAATAGTGAATAAGCTATGTAAATGAACCTTGATGAGTCTATTTTCATATGGAAGA
63519469 AACGAAATGGTCATAGGAGTTACATGTTA
521 AACGAAATGGTCATAGGAGTTACATGTTA
63519498 CCGTTGCTTTGGCTCTCTGTTTTATAGATTTCGCTCGATAGCAATCGGATTCGGGATCAATAAAG
1 CCGTTGCTTTGGCTCTCTGTTTTATAGATTTCGCTCGATAGCAATCGGATTCGGGATCAATAAAG
63519563 TCGAAGTCATCCACACTATCAACGTCTCTATTTTGGTATAAATTTTTGGTTGAACTTTGAAATGG
66 TCGAAGTCATCCACACTATCAACGTCTCTATTTTGGTATAAATTTTTGGTTGAACTTTGAAATGG
63519628 CATGTATAGGACTACCCCTTGTTGGTTAAATATGTTGTGATGTATTTGTGTACGGCCATGCGAAA
131 CATGTATAGGACTACCCCTTGTTGGTTAAATATGTTGTGATGTATTTGTGTACGGCCATGCGAAA
63519693 ATGGCTCGTAAAAGGAAGCATGAACTTAGACTATTTGTGGTTTGTATGTATATATATGGTGTCAT
196 ATGGCTCGTAAAAGGAAGCATGAACTTAGACTATTTGTGGTTTGTATGTATATATATGGTGTCAT
63519758 GATGTGATTATGGATTGGAAATGGGAGTGTTGGTCACATGATCAGCCATTGGTATGGTTAAAATG
261 GATGTGATTATGGATTGGAAATGGGAGTGTTGGTCACATGATCAGCCATTGGTATGGTTAAAATG
63519823 ATCATATATGAACCTATGTATGGCAAGACTAGTTGGTTCATGGAGACTACCAAATAGGTAAGACC
326 ATCATATATGAACCTATGTATGGCAAGACTAGTTGGTTCATGGAGACTACCAAATAGGTAAGACC
63519888 TACCTTAAAAACAGATGCTGCCAGCTGCAGTGACGTGAATGTGAAAAATCACCAAAATTTGTAGG
391 TACCTTAAAAACAGATGCTGCCAGCTGCAGTGACGTGAATGTGAAAAATCACCAAAATTTGTAGG
63519953 AATGGTATTAAATAGTGAATAAGCTATGTAAATGAACCTTGATGAGTCTATTTTCATATGGAAGA
456 AATGGTATTAAATAGTGAATAAGCTATGTAAATGAACCTTGATGAGTCTATTTTCATATGGAAGA
63520018 AACGAAATGGTCATAGGAGTTACATGTTA
521 AACGAAATGGTCATAGGAGTTACATGTTA
63520047 AGAGATATTA
Statistics
Matches: 547, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
549 547 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (549 bp):
CCGTTGCTTTGGCTCTCTGTTTTATAGATTTCGCTCGATAGCAATCGGATTCGGGATCAATAAAG
TCGAAGTCATCCACACTATCAACGTCTCTATTTTGGTATAAATTTTTGGTTGAACTTTGAAATGG
CATGTATAGGACTACCCCTTGTTGGTTAAATATGTTGTGATGTATTTGTGTACGGCCATGCGAAA
ATGGCTCGTAAAAGGAAGCATGAACTTAGACTATTTGTGGTTTGTATGTATATATATGGTGTCAT
GATGTGATTATGGATTGGAAATGGGAGTGTTGGTCACATGATCAGCCATTGGTATGGTTAAAATG
ATCATATATGAACCTATGTATGGCAAGACTAGTTGGTTCATGGAGACTACCAAATAGGTAAGACC
TACCTTAAAAACAGATGCTGCCAGCTGCAGTGACGTGAATGTGAAAAATCACCAAAATTTGTAGG
AATGGTATTAAATAGTGAATAAGCTATGTAAATGAACCTTGATGAGTCTATTTTCATATGGAAGA
AACGAAATGGTCATAGGAGTTACATGTTA
Found at i:63521368 original size:40 final size:40
Alignment explanation
Indices: 63521331--63521516 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
63521321 GCTACTCGTT
* *
63521331 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
63521371 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
63521411 CCAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
63521451 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
63521492 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
63521517 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.86
41 15 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:63524720 original size:39 final size:40
Alignment explanation
Indices: 63524666--63524844 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
63524656 AACCCAAGTA
* *
63524666 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
63524705 CCTTCGGGACTTAGCCCGGATATAGTTAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63524745 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63524784 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63524824 CCTTTGGGACTTAGCTCGGAT
1 CCTTCGGGACTTAGCCCGGAT
63524845 GTCATCCGAA
Statistics
Matches: 127, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 51 0.40
40 76 0.60
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63524797 original size:79 final size:80
Alignment explanation
Indices: 63524666--63524844 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 80
63524656 AACCCAAGTA
* *
63524666 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
63524730 TTAATAGCACAAATG
66 TCAATAGCACAAATG
*
63524745 CCTTCAGGACTTAGCCCGGATATAGTC-ACTAGCAC-AATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
63524808 GTCACTAGCACAAATG
65 GTCAATAGCACAAATG
* *
63524824 CCTTTGGGACTTAGCTCGGAT
1 CCTTCGGGACTTAGCCCGGAT
63524845 GTCATCCGAA
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 72 0.80
80 17 0.19
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAATG
Found at i:63527127 original size:16 final size:16
Alignment explanation
Indices: 63527106--63527140 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63527096 GCAAATCTTA
63527106 AAATGCCAAAAAGTCG
1 AAATGCCAAAAAGTCG
* *
63527122 AAATGCCGAAAAGTTG
1 AAATGCCAAAAAGTCG
63527138 AAA
1 AAA
63527141 GTCTGGCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.14
Consensus pattern (16 bp):
AAATGCCAAAAAGTCG
Found at i:63527399 original size:29 final size:28
Alignment explanation
Indices: 63527373--63527429 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
63527363 TTCGGGCCAG
*
63527373 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGA-TTGGGCCTA
63527402 ATGGGCCATATGAATGAGATTGGGCCTA
1 ATGGGCCATATGAATGAGATTGGGCCTA
63527430 GTGGATTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (28 bp):
ATGGGCCATATGAATGAGATTGGGCCTA
Found at i:63529614 original size:40 final size:40
Alignment explanation
Indices: 63529565--63530066 Score: 833
Period size: 40 Copynumber: 12.6 Consensus size: 40
63529555 CCAGCATGAT
*** *
63529565 TGCTCTTCGGGACCCAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
*
63529605 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* *
63529645 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
63529685 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* * *
63529725 TGCTCTCCGGGATTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
63529765 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
*
63529805 TGCTCTTCAGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* *
63529845 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
*
63529885 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
63529925 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
*
63529965 TGCTCTTCGGGATTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* *
63530005 TGCTCTTCGGGATTTAGTCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
* *
63530045 TGCTCTTCGGGACTTAGCCCGG
1 TGCTCTTCGGGATTTAGTCCGG
63530067 CTATACAACT
Statistics
Matches: 440, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 440 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGTCCGGATACATCACTAGCACGAA
Found at i:63532416 original size:46 final size:45
Alignment explanation
Indices: 63532345--63532433 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 45
63532335 ATATATATAC
* * *
63532345 ATCTCATACATATTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATTCACATTAGCCATTCGGCCTTACCACATATCT
*
63532390 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 ATCTCATACACA-TTCACATTAGCCATTCGGCCTTACCACATAT
63532434 ATACATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 11 0.28
46 28 0.72
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (45 bp):
ATCTCATACACATTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:63532469 original size:47 final size:47
Alignment explanation
Indices: 63532407--63532669 Score: 454
Period size: 47 Copynumber: 5.6 Consensus size: 47
63532397 ACACATTTCG
* * * *
63532407 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
63532454 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
63532501 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
63532548 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
63532595 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
63532642 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
63532670 TATATACAGG
Statistics
Matches: 209, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 209 1.00
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:63532732 original size:141 final size:138
Alignment explanation
Indices: 63532438--63532724 Score: 348
Period size: 141 Copynumber: 2.1 Consensus size: 138
63532428 ACATATATAC
*
63532438 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA
1 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
* * ** * *
63532503 TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
66 TTGGCCATTCGGCCTTATCACACATACACAGGTTCACATTCATCACATT-GAAAAT--GCCTAAT
* **
63532568 CACACATACGC
128 CACAAATACAA
63532579 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
1 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
* *
63532644 TTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACA-T-AAAAT-CCTAA
66 TTGGCCATTCGGCCTTATCA--C--ACATACACAGGTTCACATTCATCACATTGAAAATGCCT-A
*
63532706 ATCA-AAATATAA
126 ATCACAAATACAA
*
63532718 ATTTTCA
1 ATGTTCA
63532725 TGTATTCACA
Statistics
Matches: 127, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
139 13 0.10
140 4 0.03
141 84 0.66
142 2 0.02
143 1 0.01
144 1 0.01
145 22 0.17
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.31
Consensus pattern (138 bp):
ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA
TTGGCCATTCGGCCTTATCACACATACACAGGTTCACATTCATCACATTGAAAATGCCTAATCAC
AAATACAA
Found at i:63534933 original size:20 final size:20
Alignment explanation
Indices: 63534880--63534934 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
63534870 GAGCTCAAAT
63534880 GAGCT-GAAACGAGCTGAAAG
1 GAGCTGGAAACGAGCTG-AAG
63534900 GAGCTGG--ACGGAGCTCG-AG
1 GAGCTGGAAAC-GAGCT-GAAG
63534919 GAGCTGGAAACGAGCT
1 GAGCTGGAAACGAGCT
63534935 AGGATTAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
19 11 0.37
20 15 0.50
21 4 0.13
ACGTcount: A:0.31, C:0.18, G:0.40, T:0.11
Consensus pattern (20 bp):
GAGCTGGAAACGAGCTGAAG
Found at i:63535492 original size:11 final size:11
Alignment explanation
Indices: 63535476--63535501 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63535466 ATTGCATGTA
63535476 TGATATTATTG
1 TGATATTATTG
63535487 TGATATTATTG
1 TGATATTATTG
63535498 TGAT
1 TGAT
63535502 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:63538299 original size:16 final size:16
Alignment explanation
Indices: 63538278--63538312 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63538268 GCAAATCTTA
*
63538278 AAATGCCAAAAAGTCG
1 AAATGCCAAAAAGCCG
*
63538294 AAATGCCGAAAAGCCG
1 AAATGCCAAAAAGCCG
63538310 AAA
1 AAA
63538313 GTCTAGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.09
Consensus pattern (16 bp):
AAATGCCAAAAAGCCG
Found at i:63538565 original size:29 final size:29
Alignment explanation
Indices: 63538529--63538619 Score: 109
Period size: 28 Copynumber: 3.2 Consensus size: 29
63538519 ACATGGCTTG
*
63538529 GAAT-TGATTCGGGCC-AGATGGGCTATAT
1 GAATGTGATT-GGGCCTAGATGGGCCATAT
63538557 GAATGTGATTTGGGCCTA-ATGGGCCATAT
1 GAATGTGA-TTGGGCCTAGATGGGCCATAT
*
63538586 GAATGAGATTGGGCCTAG-TGGGCCATAT
1 GAATGTGATTGGGCCTAGATGGGCCATAT
*
63538614 GCATGT
1 GAATGT
63538620 ATGTAGACTT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
28 27 0.49
29 25 0.45
30 3 0.05
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (29 bp):
GAATGTGATTGGGCCTAGATGGGCCATAT
Found at i:63545633 original size:46 final size:47
Alignment explanation
Indices: 63545561--63545701 Score: 160
Period size: 46 Copynumber: 3.0 Consensus size: 47
63545551 GACAGGACAG
* *
63545561 GACAGAAATGAGCCATGTAAGTCCATATCAG-ATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGGA
* *
63545607 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAG--A-ATATATGGCATTGGA
* * * * *
63545657 GACAGGAATAATCCATGTAAGTCCATGTC-GAAGACATGGCATTGG
1 GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGG
63545702 CAGGATATTG
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
46 40 0.50
47 1 0.01
49 1 0.01
50 38 0.47
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGGA
Found at i:63545867 original size:12 final size:12
Alignment explanation
Indices: 63545845--63545870 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63545835 CAGGTAAGAA
63545845 AGAAGGTAAGTG
1 AGAAGGTAAGTG
63545857 AGAAGGTAAGTG
1 AGAAGGTAAGTG
63545869 AG
1 AG
63545871 TAAAGAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.42, T:0.15
Consensus pattern (12 bp):
AGAAGGTAAGTG
Found at i:63558801 original size:20 final size:21
Alignment explanation
Indices: 63558758--63558803 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
63558748 ACTGTTTTGT
63558758 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
63558778 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
63558797 TATGGGC
1 TATGGGC
63558804 AATGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:63568096 original size:22 final size:22
Alignment explanation
Indices: 63568071--63568114 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
63568061 CCCATTCTCA
*
63568071 ATCACTAATCATGCTTATAACC
1 ATCACTAACCATGCTTATAACC
*
63568093 ATCACTAACCATGCTTCTAACC
1 ATCACTAACCATGCTTATAACC
63568115 TTTCTATCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.30
Consensus pattern (22 bp):
ATCACTAACCATGCTTATAACC
Found at i:63569981 original size:46 final size:46
Alignment explanation
Indices: 63569921--63570096 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
63569911 TATTTGGGCA
*
63569921 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63569967 TCCGAACTCATTGAGTTGAGTCCGAGTT-AGTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
63570012 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63570059 TCCCGAGCTCATTGAGTTGAGTCCAAGTTCTCTTATGG
1 T-CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
63570097 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 5 0.05
46 60 0.56
47 26 0.24
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63570028 original size:93 final size:93
Alignment explanation
Indices: 63569917--63570087 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63569907 TGGATATTTG
63569917 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT-CCGAACTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-TCCCGAACTCATTGA
*
63569981 GTTGAGTCCGAGTTAGTGAGATGTAACTA
65 GTTGAGTCCAAGTTAGTGAGATGTAACTA
* *
63570010 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTCCCGAACTCATTGAG
63570075 TTGAGTCCAAGTT
66 TTGAGTCCAAGTT
63570088 CTCTTATGGG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTCCCGAACTCATTGAG
TTGAGTCCAAGTTAGTGAGATGTAACTA
Found at i:63574086 original size:43 final size:43
Alignment explanation
Indices: 63574035--63574181 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
63574025 TAACCTAGAT
* * **
63574035 ATGGTCTTACATGTTATCATATATCAATGCCAACATCCCAGAC
1 ATGGTCTTACATGTAATCATATATCAATGCAAATGTCCCAGAC
* *** * * *
63574078 GTGGTCTTACACAAAATCATATAACGATGCTAATGTCCCAGAC
1 ATGGTCTTACATGTAATCATATATCAATGCAAATGTCCCAGAC
63574121 ATGGTCTTACATGTAATC-TCA-ATACAATGCAAATGTCCCAGAC
1 ATGGTCTTACATGTAATCAT-ATAT-CAATGCAAATGTCCCAGAC
63574164 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
63574182 TCATCTCGAT
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 2 0.02
43 83 0.98
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCATATATCAATGCAAATGTCCCAGAC
Found at i:63575789 original size:11 final size:11
Alignment explanation
Indices: 63575773--63575797 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63575763 TGTTTGCTCG
63575773 TTTTGAATTTA
1 TTTTGAATTTA
63575784 TTTTGAATTTA
1 TTTTGAATTTA
63575795 TTT
1 TTT
63575798 CATTTTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTTGAATTTA
Done.