Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 212 of 328
Found at i:63577644 original size:11 final size:11
Alignment explanation
Indices: 63577628--63577653 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63577618 AACTAAAATG
63577628 AAATAAATTCA
1 AAATAAATTCA
63577639 AAATAAATTCA
1 AAATAAATTCA
63577650 AAAT
1 AAAT
63577654 GAGCAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAATTCA
Found at i:63580884 original size:29 final size:28
Alignment explanation
Indices: 63580850--63580952 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
63580840 TAATCGATCA
*
63580850 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* *
63580879 CGCACACATAGTGCCATATAATTTAAGTT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
63580908 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
63580937 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63580953 ATCTTGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.05
29 61 0.94
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:63583805 original size:11 final size:10
Alignment explanation
Indices: 63583788--63583815 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
63583778 ATTCAAAAAT
63583788 ATTTTTTTGA
1 ATTTTTTTGA
63583798 ATTTTTTTGA
1 ATTTTTTTGA
63583808 ATTTTTTT
1 ATTTTTTT
63583816 CAAATACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (10 bp):
ATTTTTTTGA
Found at i:63585610 original size:40 final size:40
Alignment explanation
Indices: 63585544--63585732 Score: 265
Period size: 40 Copynumber: 4.7 Consensus size: 40
63585534 GGACTAAGAT
* *
63585544 CCGAAGGAATTTGTGCGAGTTG-CTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
*
63585584 CCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
63585624 CCGAAGGCATTTGGGCTAGCGACCATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
63585664 CCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
63585704 CCGAAGGCATTTGTGCGAGTTG-CTATATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATC
63585733 TGGCTAAATC
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.02
40 129 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:63585732 original size:80 final size:80
Alignment explanation
Indices: 63585532--63585732 Score: 314
Period size: 80 Copynumber: 2.5 Consensus size: 80
63585522 CGGATGATAA
* * *
63585532 CCGGACTAAGATCCGAAGGAATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTA
63585597 TGCTAGTGACTATAT
66 TGCTAGTGACTATAT
* * * * *
63585612 CCGGGCTAAGTCCCGAAGGCATTTGGGCTAG-CGACCATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCATTT
63585676 ATGCTAGTGACTATAT
65 ATGCTAGTGACTATAT
63585692 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATC
63585733 TGGCTAAATC
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 104 0.98
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTA
TGCTAGTGACTATAT
Found at i:63588410 original size:11 final size:11
Alignment explanation
Indices: 63588394--63588419 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63588384 AACTAAAATG
63588394 AAATAAATTCA
1 AAATAAATTCA
63588405 AAATAAATTCA
1 AAATAAATTCA
63588416 AAAT
1 AAAT
63588420 GAGCAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAATTCA
Found at i:63589413 original size:30 final size:30
Alignment explanation
Indices: 63589379--63589439 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
63589369 TTCCTGAGCC
63589379 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
63589409 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
63589439 T
1 T
63589440 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:63591387 original size:2 final size:2
Alignment explanation
Indices: 63591380--63591404 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63591370 TCATGACATG
63591380 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
63591405 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63596492 original size:44 final size:44
Alignment explanation
Indices: 63596429--63596517 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
63596419 AAGAAGCTAC
63596429 TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
1 TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
*
63596473 TTTGGAAAATGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
1 TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
63596517 T
1 T
63596518 CACAAGTATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (44 bp):
TTTGGAAAAGGAAAGTTTAAAGAAAGAACAATACACTGAAATTT
Found at i:63597771 original size:65 final size:66
Alignment explanation
Indices: 63597666--63597793 Score: 213
Period size: 65 Copynumber: 2.0 Consensus size: 66
63597656 CCGTGTGCCT
* *
63597666 CACACGGCCACAAAACATGCCCGTGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGTA
1 CACACGGCCACAAAACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGTA
63597731 C
66 C
**
63597732 CACACGGCCA-AGGACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTG
1 CACACGGCCACAAAACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTG
63597794 GGTAACACGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
65 48 0.83
66 10 0.17
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (66 bp):
CACACGGCCACAAAACACGCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGTA
C
Found at i:63597814 original size:65 final size:63
Alignment explanation
Indices: 63597684--63597825 Score: 198
Period size: 65 Copynumber: 2.2 Consensus size: 63
63597674 CACAAAACAT
*
63597684 GCCCGTGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGTACCACACGGCCAAGGACAC
1 GCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGTA-CACACGGCC-AGGACAC
63597749 GCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGGGTA-ACACGGCC-GGCCAC
1 GCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTT--GTACACACGGCCAGG--AC
63597812 AC
62 AC
*
63597814 GCCTATGTGCCA
1 GCCCATGTGCCA
63597826 CACACAGGCA
Statistics
Matches: 71, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
63 2 0.03
65 66 0.93
67 3 0.04
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (63 bp):
GCCCATGTGCCAGGCTGTGTGAAATTTAGGGAGGTTACTGACTTGTACACACGGCCAGGACAC
Found at i:63597931 original size:13 final size:13
Alignment explanation
Indices: 63597913--63597950 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
63597903 CGCCGGGGAC
63597913 ACATGGCCGTGTA
1 ACATGGCCGTGTA
*
63597926 ACATGGCCGTTTA
1 ACATGGCCGTGTA
*
63597939 ACATGACCGTGT
1 ACATGGCCGTGT
63597951 GTCACACACG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (13 bp):
ACATGGCCGTGTA
Found at i:63609737 original size:31 final size:31
Alignment explanation
Indices: 63609678--63609739 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
63609668 GAGTTTGATC
*
63609678 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
63609709 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
63609740 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:63619945 original size:29 final size:29
Alignment explanation
Indices: 63619911--63620013 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
63619901 TACTCGACCG
* **
63619911 CGCACACTTAGTGCCATGT-GATTTAAGCC
1 CGCACACTTAGTGCCATATAG-TCCAAGCC
* *
63619940 CGCACACATAGTGCCATATAGTCCAAGCT
1 CGCACACTTAGTGCCATATAGTCCAAGCC
* * *
63619969 CGCACACTTAGTGCCATACACAT-CAAGCT
1 CGCACACTTAGTGCCATATA-GTCCAAGCC
*
63619998 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
63620014 ATCTCATCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
29 61 0.97
30 2 0.03
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTCCAAGCC
Found at i:63627933 original size:29 final size:29
Alignment explanation
Indices: 63627849--63627951 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
63627839 TACTCGACCG
**
63627849 CGCACACTTAGTGCCATGTGATTT-AAGC-
1 CGCACACTTAGTGCCAT-ACATTTCAAGCT
* * * * *
63627877 CTGCACACATAGTTCCATATAGTCCAAGCT
1 C-GCACACTTAGTGCCATACATTTCAAGCT
63627907 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAGCT
*
63627936 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
63627952 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 3 0.05
29 56 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAGCT
Found at i:63629903 original size:29 final size:28
Alignment explanation
Indices: 63629801--63629904 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
63629791 GTGACAAGAT
* *
63629801 TGGCACTAAGTGTGCAAGCCTGAAATATA
1 TGGCACTAAGTGTGCGAG-CTTAAATATA
* *
63629830 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
63629859 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
63629888 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
63629905 AATCGATTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 6 0.09
29 58 0.91
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:63637928 original size:29 final size:28
Alignment explanation
Indices: 63637826--63637929 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
63637816 GTGACAAGAT
*
63637826 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* *
63637855 TGGCACTAAGTGTGCGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
63637884 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
63637913 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
63637930 AATCGATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:63642816 original size:77 final size:77
Alignment explanation
Indices: 63642671--63642816 Score: 177
Period size: 77 Copynumber: 1.9 Consensus size: 77
63642661 AGGGGATACA
* * * * * *
63642671 TTGAGTTGGCTTTGGGCCATGAAATTAGCACTTCGGGTATGAGTTATACTGATTTGGCTTCGATC
1 TTGAGTTGGCTTTGGGCAATGAAATCAGCACTTCGGATATAAGTTATACTAATTTGGCTTCGAGC
63642736 CATGAATATAGG
66 CATGAATATAGG
* * * * *
63642748 TTGATTTGGCTTTGGGCAATGATATCAGTACTTCGGATATAAGTTA-CCTTAATTTGGCTTCGGG
1 TTGAGTTGGCTTTGGGCAATGAAATCAGCACTTCGGATATAAGTTATAC-TAATTTGGCTTCGAG
63642812 CCATG
65 CCATG
63642817 GTATAGTTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
76 1 0.02
77 56 0.98
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (77 bp):
TTGAGTTGGCTTTGGGCAATGAAATCAGCACTTCGGATATAAGTTATACTAATTTGGCTTCGAGC
CATGAATATAGG
Found at i:63645339 original size:17 final size:16
Alignment explanation
Indices: 63645313--63645344 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
63645303 GGATTAGCCA
63645313 TTTTGCGAACTCTAGT
1 TTTTGCGAACTCTAGT
63645329 TTTTGGCGAACTCTAG
1 TTTT-GCGAACTCTAG
63645345 GTTTGGCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (16 bp):
TTTTGCGAACTCTAGT
Found at i:63645349 original size:16 final size:17
Alignment explanation
Indices: 63645317--63645351 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
63645307 TAGCCATTTT
*
63645317 GCGAACTCTAGTTTTTG
1 GCGAACTCTAGTGTTTG
63645334 GCGAACTCTAG-GTTTG
1 GCGAACTCTAGTGTTTG
63645350 GC
1 GC
63645352 AGACTCTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.34
Consensus pattern (17 bp):
GCGAACTCTAGTGTTTG
Found at i:63646314 original size:786 final size:784
Alignment explanation
Indices: 63644322--63646887 Score: 3781
Period size: 786 Copynumber: 3.3 Consensus size: 784
63644312 TACAGGTAAT
* * *
63644322 TTTAATGAACA-AAAGATACACTCAACTTTTCACAAGTATAAATATCAAGGATGGAATTTTCTAA
1 TTTAATGAA-AGAAAAATACACTCAACTTTTCACAAGTATAAATATCAAGAATGAAATTTTCTAA
* * * *
63644386 GTGGGGAAGAATTGTAACTGTCTGCCCGAG-AGAGACCTAATATTCAGTTATTGTCTGGTGTATA
65 GTGGGGGAGAATTGTAACTGTCTGCCCG-GCAGAGACCCAATATTCAGTTATTGTTTGGCGTATA
* * * *
63644450 ATTGGTAAAGTCAATGGTAAAATTGAGTAAGTAACGTATTTGTTTTGGCTACATAGAGCACTTTG
129 ATTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTG
* *
63644515 TGGGATTAGCCATTTTGCGAACTCTAATTTTTGGCGAGCTCTAGTGTTTGGCAGACTCTTTAGCA
194 TGGGATTAGCCATTTTGCGAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGACTCTTTAGCA
*
63644580 AAGTATCCACCCACCCCAAATGTTTTGAAAGAACTCATTAAGTTCACAGTTTGATTAGACTTGTT
259 AAGTAT-CACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAGTTTGATTAGACTTGTT
63644645 TTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGAACCA
323 TTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGAACCA
* * * * * *
63644710 AGCTAGAATTCTATAGATGATTTGACCTAAAACTTGTTAAGTGCATTTAATCATGGGAATCAAAG
388 AACTAGAATTCTGTAGATGATTTGAACTAAAACTTCTTAAGAGCATTTAATCATGGGAATCAAGG
* ** * * *
63644775 ATGTCAATGGAATTATCAGATTTTTCCACCAAACGTTGTCTCCGTTTCATGAGTATGTAAGGATA
453 GTGTCAATGGAATTATTTGATTTTTCCACTAAACCTTGTCTCCGTTTCATGAGTATATAAGGATA
* * * * * *
63644840 ATGTTGGCCATTAAGAGTTGGTATTACCACAAGAACTATCGAAAACTCACAATGTGTTCCACATG
518 ATGTTGGCCATCAAGAGTTGGAATTACCACCAGAACTATCGAAGATTCACAATGTGTTCCACGTG
* * **
63644905 TCTATGTCATGAAGGTATTGATTAAATCCAGATAATGTGGTACAAA-TAGAAGACATAGAAGTAG
583 TCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTA-AAGACATAGAAGTAG
*
63644969 AGCCAAATCTATCTTATGAAGAGGAGCCTGTTTGCATTTTAGCTAAAGAAGTGAAAGAGTTAAGA
647 AGCCAAATCTATCTTATGAAGAGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAGA
* * * * * *
63645034 AATAAGAAGATCGCATTAGTAAAAGTGTCAT-GAGGAATCATAATGA-AGAAGAAGCTACTTCGA
712 AATAAGAGGATTGCCTTAGTAAAAGTGTTATGGAGGAATCATAAT-ATAGAAGAAGCTACTTGGG
63645097 AAAGGGAAA
776 AAAGGGAAA
* * * *
63645106 TTTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATAAATAATGAAATTTTTTAA
1 -TTTAATGAAAGAAAAATACACTCAACTTTTCACAAGTATAAATATCAAGAATGAAATTTTCTAA
* * *
63645171 GTGGGGGAGAATTGTAACTGACTGCCCAGCAGAGACCCAATATTCAGTTATTGTTTGGCATATAA
65 GTGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTCAGTTATTGTTTGGCGTATAA
* * * *
63645236 TTGGTAAAGTCAAGGGCAGAATTGAGTAAGTGAAGTATTTTTTTTTGGCTAAATAGAGCATTTTG
130 TTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTA-TTTGTTTTGGCTAAATAGAGCACTTTG
*
63645301 TGGGATTAGCCATTTTGCGAACTCTAGTTTTTGGCGAACTCTA-GGTTTGGCAGACTCTTTAGCA
194 TGGGATTAGCCATTTTGCGAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGACTCTTTAGCA
* * * * *
63645365 AAGTATCCACCCACCCCAAATGTTTTAAAAGAACTTGTTAAGTTCACAATTAGATTAGGCTTGTT
259 AAGTAT-CACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAGTTTGATTAGACTTGTT
* *
63645430 TTATATTTAGTGTTTGATGACTTAGAAAGTAATTTTTGGATTTAGTTAAGACTTAGTTAGAATCA
323 TTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGAACCA
63645495 AACTAGAATTCTGTAGATGATTT-AACCTAAAACTTCTTAAGAGCATTTAAGT-A-GGGCAATCA
388 AACTAGAATTCTGTAGATGATTTGAA-CTAAAACTTCTTAAGAGCATTTAA-TCATGGG-AATCA
* ** *
63645557 AGGGTGTTAATGGAATTATTTGATTTTTCCACTAAACCTTGTCTTTGTTTCATGAGTTTATAAGG
450 AGGGTGTCAATGGAATTATTTGATTTTTCCACTAAACCTTGTCTCCGTTTCATGAGTATATAAGG
*
63645622 ATAATGTTGGCCATCAAGAGTTGGAATTACCACCAGAAATATCGAAGATTCACAATGTGTTCCAC
515 ATAATGTTGGCCATCAAGAGTTGGAATTACCACCAGAACTATCGAAGATTCACAATGTGTTCCAC
* *
63645687 GTTTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTTCAAATTAAAGACATAGAAGT
580 GTGTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTAAAGACATAGAAGT
* * * *
63645752 AAATCCAAATCTATCTTATGTAGAGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGGAAGAGTTAA
645 AGAGCCAAATCTATCTTATGAAGAGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAA
* * *
63645817 GAAATAAGAGGATTGCCTTAGTAAAAATGTTATGGAAGAATCATAATATAGAAGAAGCTATTTGG
710 GAAATAAGAGGATTGCCTTAGTAAAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGG
63645882 GAAAGGGAAA
775 GAAAGGGAAA
*
63645892 GTTTAATGAAAGAAAAATACATTCAACTTTTCACAAGTATAAATATCAAGAATGAAATTTTCTAA
1 -TTTAATGAAAGAAAAATACACTCAACTTTTCACAAGTATAAATATCAAGAATGAAATTTTCTAA
** * * * * * *
63645957 GTGGAAGAGAATTTTAACTGTCTGCCCGGTAGAGACCAAATATTCAATTATTATTTGGCGTACAA
65 GTGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTCAGTTATTGTTTGGCGTATAA
*
63646022 TTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTGCTTTGGCTAAATAGAGCACTTTGT
130 TTGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTGT
* * * * *
63646087 GGGATTACCCATTTTGCAAACTCAAATTTTTGGTGAACTCTAGGGTTTGGCAGACTATTTAGCTA
195 GGGATTAGCCATTTTGCGAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGACTCTTTAGC-A
* * * *
63646152 ACTGGAT-ACCCACCCCAAATGTTTTGAAAGAACTCGTTATGTTCACAGTTTGAATAGACTTGTT
259 A-AGTATCACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAGTTTGATTAGACTTGTT
* * * *
63646216 TTATATTTAGTGTTTGATTACTTAGAAAATACTGTTTGAATTTAGTTAAGACTTAGTTAGAACCA
323 TTATATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGAACCA
* *
63646281 AACTAGAATTCTGTAGATGATTTGAACTAAAACTTCTTAAGTA-CGTTTAATCATAGGAATCAAG
388 AACTAGAATTCTGTAGATGATTTGAACTAAAACTTCTTAAG-AGCATTTAATCATGGGAATCAAG
* *
63646345 GGTGTCAATGGAATT-TTATGATTGTTCCACTAAACCTTGTCTCCATTTCATGAGTATATAAGGA
452 GGTGTCAATGGAATTATT-TGATTTTTCCACTAAACCTTGTCTCCGTTTCATGAGTATATAAGGA
* ** *
63646409 TAATGTTGGCCATCAAGAGTTAGCTTTACCACCAGAACTATCAAAGATTCACAATGTGTTCCACG
516 TAATGTTGGCCATCAAGAGTTGGAATTACCACCAGAACTATCGAAGATTCACAATGTGTTCCACG
* *
63646474 TGTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTGAAGACACAGAAGTA
581 TGTCTATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTAAAGACATAGAAGTA
* * *
63646539 GAGCCAAATCTATCTTATGAAGAGAAGCTTGTTTGCATTTTAGTCAAAGAAGTGAAAGAGTTAAG
646 GAGCCAAATCTATCTTATGAAGAGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAG
* * *
63646604 AAATAAGAGGA-TCCCATTAGTAAATGTGTTATGGAGGAATCATAATATAGAATAAGCTACTTGG
711 AAATAAGAGGATTGCC-TTAGTAAAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGG
63646668 GAAAGGGACAA
775 GAAAGGGA-AA
* *
63646679 TTTAATGAAAGAACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCTAAG
1 TTTAATGAAAGAAAAATACACTCAACTTTTCACAAGTATAAATATCAAGAATGAAATTTTCTAAG
* * *
63646744 TGGGGGAGAATTGTAGCTGTCTGCCCGGCAGAGACCCAATATTCAGTTATTGTATGGAGTATAAT
66 TGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTCAGTTATTGTTTGGCGTATAAT
* *
63646809 TGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTATTTTGCCTAAATAGAGCACTTTGTG
131 TGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTGTG
63646874 GGATTAGCCATTTT
196 GGATTAGCCATTTT
63646888 ACTGCAACAC
Statistics
Matches: 1595, Mismatches: 167, Indels: 37
0.89 0.09 0.02
Matches are distributed among these distances:
784 6 0.00
785 659 0.41
786 918 0.58
787 9 0.01
788 3 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (784 bp):
TTTAATGAAAGAAAAATACACTCAACTTTTCACAAGTATAAATATCAAGAATGAAATTTTCTAAG
TGGGGGAGAATTGTAACTGTCTGCCCGGCAGAGACCCAATATTCAGTTATTGTTTGGCGTATAAT
TGGTAAAGTCAAGGGTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTGTG
GGATTAGCCATTTTGCGAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGACTCTTTAGCAAA
GTATCACCCACCCCAAATGTTTTGAAAGAACTCGTTAAGTTCACAGTTTGATTAGACTTGTTTTA
TATTTAGTGTTTGATGACTTAGAAAGTAATGTTTGGATTTAGTTAAGACTTAGTTAGAACCAAAC
TAGAATTCTGTAGATGATTTGAACTAAAACTTCTTAAGAGCATTTAATCATGGGAATCAAGGGTG
TCAATGGAATTATTTGATTTTTCCACTAAACCTTGTCTCCGTTTCATGAGTATATAAGGATAATG
TTGGCCATCAAGAGTTGGAATTACCACCAGAACTATCGAAGATTCACAATGTGTTCCACGTGTCT
ATGTTACGAAGGTATTGACCAAATCCAGATAATGTGGTACAAATTAAAGACATAGAAGTAGAGCC
AAATCTATCTTATGAAGAGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAGAAATA
AGAGGATTGCCTTAGTAAAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGGGAAAGG
GAAA
Found at i:63647176 original size:18 final size:18
Alignment explanation
Indices: 63647153--63647196 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
63647143 TTCGGGTTGG
63647153 CCGTGTGGTCACACATGC
1 CCGTGTGGTCACACATGC
63647171 CCGTGTGGTCACACATGC
1 CCGTGTGGTCACACATGC
63647189 CCGTGTGG
1 CCGTGTGG
63647197 CTTGGAACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.14, C:0.32, G:0.32, T:0.23
Consensus pattern (18 bp):
CCGTGTGGTCACACATGC
Found at i:63649660 original size:42 final size:42
Alignment explanation
Indices: 63649614--63649696 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
63649604 TGGTGTTGAT
* * *
63649614 ATGAGAATTCGTGTAAGACCGCGTCTAGGACATGGCATCGAA
1 ATGAGAATTCATATAAGACCGCATCTAGGACATGGCATCGAA
* ** *
63649656 ATGAGATTTCATATAAGACCTTATCTAGGATATGGCATCGA
1 ATGAGAATTCATATAAGACCGCATCTAGGACATGGCATCGA
63649697 TGTAAGATCC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
ATGAGAATTCATATAAGACCGCATCTAGGACATGGCATCGAA
Found at i:63654132 original size:27 final size:26
Alignment explanation
Indices: 63654088--63654139 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63654078 CTCGCTGCAA
*
63654088 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63654115 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63654140 CCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63661495 original size:27 final size:26
Alignment explanation
Indices: 63661451--63661501 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
63661441 CTCGCTGCAA
*
63661451 TCTGGTGCCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
63661478 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
63661502 GCCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:63665881 original size:18 final size:18
Alignment explanation
Indices: 63665806--63665883 Score: 68
Period size: 18 Copynumber: 4.3 Consensus size: 18
63665796 ATTAAGTAAA
* * *
63665806 AGTAAACAGTACAGTAAC
1 AGTAAATAGTGCAGTATC
*
63665824 AATAAATAGTGCAGTATC
1 AGTAAATAGTGCAGTATC
* * *
63665842 AGTAAACAATGACA-TATT
1 AGTAAATAGTG-CAGTATC
*
63665860 AGTAAATAGTGCAGTGTC
1 AGTAAATAGTGCAGTATC
63665878 AGTAAA
1 AGTAAA
63665884 CAGTACGTAA
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
17 2 0.04
18 42 0.91
19 2 0.04
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (18 bp):
AGTAAATAGTGCAGTATC
Found at i:63668462 original size:31 final size:31
Alignment explanation
Indices: 63668426--63668487 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
63668416 ATGCAAAAGC
63668426 ATATATTGAG-TCCGCACACTTAGTGCTATAT
1 ATATATTGAGCT-CGCACACTTAGTGCTATAT
*
63668457 ATATATTTAGCTCGCACACTTAGTGCTATAT
1 ATATATTGAGCTCGCACACTTAGTGCTATAT
63668488 GATCAAACTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (31 bp):
ATATATTGAGCTCGCACACTTAGTGCTATAT
Found at i:63674597 original size:27 final size:27
Alignment explanation
Indices: 63674566--63674748 Score: 262
Period size: 27 Copynumber: 6.9 Consensus size: 27
63674556 ACCCTCAAAT
63674566 TGGTAAAATGACTGTTTTGCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
* * *
63674593 TGGTAAAATGATTGTTTTGCCTTTATC
1 TGGTAAAATGACTGTTTTGCCCTTATG
* *
63674620 TGGTAAAATGACTATTTTACCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
* *
63674647 TGGAAAAATGACTATTTTGCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
*
63674674 TGGTAAAATGACT-ATTT-CCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
* *
63674699 TGGTAAAATGATTGTTTTTCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
63674726 TGGTAAAATGACTGTTTTGCCCT
1 TGGTAAAATGACTGTTTTGCCCT
63674749 ATATAATGTA
Statistics
Matches: 138, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
25 20 0.14
26 6 0.04
27 112 0.81
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (27 bp):
TGGTAAAATGACTGTTTTGCCCTTATG
Found at i:63678910 original size:30 final size:29
Alignment explanation
Indices: 63678816--63678917 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
63678806 TATAGTGAAT
* * *
63678816 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
63678845 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
63678873 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
63678903 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
63678918 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:63682943 original size:778 final size:778
Alignment explanation
Indices: 63681331--63683633 Score: 3054
Period size: 778 Copynumber: 2.9 Consensus size: 778
63681321 ATCCAAGTAG
* *
63681331 AGGAGCCTGTTTGCAATTTAGCCAAAGAAGTGAAAGAGTTAAGAAATAAGAGGATCGCCTTAGTA
1 AGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAGAAATAAGAGGATCGCATTAGTA
*
63681396 AAAGTGTTATGGAGGAATCATAATATAGAAAAAGCTACTTGGGAAAGGGAAAGTTTAATGAAAGA
66 AAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGGGAAAGGGAAAGTTTAATGAAAGA
* * * * * ** *
63681461 AAAACACATTCAACTTTTCACAAGTATAAATAACAAGGTTGAAATTAACTAAATGGTGGAGAATT
131 ACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCTAAGTGG-GGAGAATT
* * *
63681526 GAAACTGTCTGCCCTGCAGAAACCCAATATTCAACTATTGTCTGGCGTATAATTGGTAAACTCAA
195 GTAACTGTCTGCCC-GCAGAGACCCAATATTCAGCTATTGTCTGGCGTATAATTGGTAAACTCAA
*
63681591 GGGTAGAATTGAGTAAGTACCA-TATTTGTTTTGGCT-AATAGAGCACTTTGTGGGATTAGCCAT
259 GGGTAGAATTGAGTAAGTA-AAGTATTTGTTTTGGCTAAATAGAGCACTTTGTGGGATTAGCCAT
*
63681654 TTTGCG-AACTCTAATTTTTGGTGAACTCTAGGGTTTGGCAGACTCTTTAGCTAAGTATCACCCA
323 TTTG-GAAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGACTCTTTAGCTAAGTAT---CCA
* * * * * * *
63681718 CCCCAAATGTTTTGAAAGAACTCTTTAAATTAACAGTTTGATTACACTTGGTTTCTATTTAGTGT
384 --CCAAATGTTTTGAAAGCACTCGTTAAGTTCACAGTTTGATTAGACTTGTTTTATATTTAGTGT
* * *
63681783 TTGATGACTTAGAAAGTAATGTTTGGATTTAGTGAAGACTTTGTTTGAACCGAACTAGAATTCTA
447 TTGATGACTTAGAAAGTAATGTTTGGATTTAGTGAAGACTTAGTTAGAACCGAACTAGAATTCTG
* * * * *
63681848 TTGATGATTTGACCTAAAACTTTTTAAGTACGTTTAATCATGAGAATCAAGGGTGTTAATAGAAT
512 TAGATGATTTGACCTAAAACTTGTTAAGTACATTTAATCATG-GAATCAAGGGTGTCAATGGAAT
* * *
63681913 TATATGATTTTTTTCACTAAACCTTGTCTCCGTTTCATGAGTATATAAGGATAATGTTGGCCATC
576 TATCT-AATTTTTTCACTAAACCTTGTCTCTGTTTCATGAGTATATAAGGATAATGTTGGCCATC
* * * *
63681978 AAGAGTTGGCATTACCTCCAGAACTATCAAAGATTCAGAATGTG-TTCTATGTGTCTATTTTAAG
640 AAGAGTTGGCATTACCACCAGAACTATCGAAGATTCACAATGTGTTTCTAAGTGTCTATTTTAAG
* *
63682042 AAGGTATTGACCAAATCCAGATAATGTCATACAAATTGAAGACACAAAAGTAGAGTCAAATCTAT
705 AAGGTATTAACCAAATCCAAATAATGTCATACAAATTGAAGACACAAAAGTAGAGTCAAATCTAT
* *
63682107 CTTATGTAG
770 CTTATGAAA
* *
63682116 AGGAGCCTGTTTGCATTTTAGCCAAAGAAGTAAAAGAGTTAAAAAATAAGAGGATCGCATTAGTA
1 AGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAGAAATAAGAGGATCGCATTAGTA
* * * * * * *
63682181 AAAATATTATGGAGGAATCATAATATAGAAGTAGCTACTTGGGAAAGAGAAAGTATAATAAAAGT
66 AAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGGGAAAGGGAAAGTTTAATGAAAGA
* *
63682246 ACAATACACTCAACTTTTTACAAGTATAAATATCAAGGATGAAATTTTCTATGTGGGGTAGAATT
131 ACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCTAAGTGGGG-AGAATT
* * *
63682311 GTAACTGTCTGCACGACATAGACCCATTATTCAGCTATTGTCTGGCGTATAATTGGTAAAACT-A
195 GTAACTGTCTGCCCG-CAGAGACCCAATATTCAGCTATTGTCTGGCGTATAATTGGT-AAACTCA
63682375 AGGGTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTGTGGGATTAGCCAT
258 AGGGTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTGTGGGATTAGCCAT
* * * * *
63682440 TTTGGAAACTCCAATTTTTGGCAAACTCTAAGGTTGGGCA-ATCTCCTTAGCTAAGTATCCA-CA
323 TTTGGAAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGA-CTCTTTAGCTAAGTATCCACCA
* * *
63682503 AATGTTTTCAAAGCACTCGTTAAGTTCACAGTTTGATTAGACTTGTTTTATGTTTAGTGTCTGAT
387 AATGTTTTGAAAGCACTCGTTAAGTTCACAGTTTGATTAGACTTGTTTTATATTTAGTGTTTGAT
* * * * *
63682568 GACTTGGAAAGTAATGTTTTGATTTAGTGAAGACTTAGTTAGAACCTAACTTGAATTCTGTACAT
452 GACTTAGAAAGTAATGTTTGGATTTAGTGAAGACTTAGTTAGAACCGAACTAGAATTCTGTAGAT
* *
63682633 GATTTGACCTTAAACTTGTTAAGTGCATTTAATCACT-GAATCAAGGGTGTCAATGGAATTATCT
517 GATTTGACCTAAAACTTGTTAAGTACATTTAATCA-TGGAATCAAGGGTGTCAATGGAATTATCT
* * * * *
63682697 AATTTTTCCACTAAACCTTGTCTTTGTTTCGTAAGTATATAAGGATATTGTTGGCCATCAAGAGT
581 AATTTTTTCACTAAACCTTGTCTCTGTTTCATGAGTATATAAGGATAATGTTGGCCATCAAGAGT
* * *
63682762 TGGCATTACCACCAAAACTATTGAAGATTCACAATGTGTTTC-ACAG-GTCT-TTGTTACGAAGG
646 TGGCATTACCACCAGAACTATCGAAGATTCACAATGTGTTTCTA-AGTGTCTATT-TTAAGAAGG
* * *
63682824 TATTAATCAAATCCAAATAATTTGT-A-ATAAATTGAAGACACAGAAGTAGAGTCAAATCTATCT
709 TATTAACCAAATCCAAATAA--TGTCATACAAATTGAAGACACAAAAGTAGAGTCAAATCTATCT
63682887 TATGAAA
772 TATGAAA
* *
63682894 AGGAGCCTGTTTACATTTTAGCCAAAGAACTGAAAGAGTTAAGAAATAAGAGGATCGCATTAGTA
1 AGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAGAAATAAGAGGATCGCATTAGTA
* * * *
63682959 AAAGTGTTATAGATGAATCATAATATAGAAGAAGCTACTTGGGAAAGGGAATGTTTAATGTAAGA
66 AAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGGGAAAGGGAAAGTTTAATGAAAGA
* * * *
63683024 ACAATTCACTCAAGTTTTCATAAGTATAAATATCAAGGATGATATTTTCTAAGTGGGGAAGAATT
131 ACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCTAAGTGGGG-AGAATT
* * * * * *
63683089 GTAACTATTTGCCCGGTAGAGACCCAGTATTCAG-TAATTGTCTAGCGTATAATTGGTAAAGTCA
195 GTAACTGTCTGCCC-GCAGAGACCCAATATTCAGCT-ATTGTCTGGCGTATAATTGGTAAACTCA
*
63683153 AGGGTAGAATTGAGTAAGTAAAGTATTTTTTTTGGCTAAATAGAGCACTTTGTGGGATTAGCCAT
258 AGGGTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTGTGGGATTAGCCAT
* * *
63683218 TTTGTAAACTCTAATTTTTAGCGAACTGTAGGGTTTGGCAGACTCTTTAGCTAAGTATCCACCTA
323 TTTGGAAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGACTCTTTAGCTAAGTATCCACC-A
** *
63683283 GCCTAATTGTTTTGAAAGCACTCGTTAAGTTCACAGTTTCTTTAGACTTTTTTTATATTTAGTGT
387 ----AA-TGTTTTGAAAGCACTCGTTAAGTTCACAGTTTGATTAGACTTGTTTTATATTTAGTGT
** * *
63683348 TTTTTGACTTAGAAAGTAATGTTTGGATTTAATTAAGACTTAGTTAGAACCGAACTAGAATTCTG
447 TTGATGACTTAGAAAGTAATGTTTGGATTTAGTGAAGACTTAGTTAGAACCGAACTAGAATTCTG
* * *
63683413 TAGATGATTTGACCTAAAACATGTTAAGTACATTTAATAATGGGAATCAAGGGTTTCAATGGAAT
512 TAGATGATTTGACCTAAAACTTGTTAAGTACATTTAATCAT-GGAATCAAGGGTGTCAATGGAAT
* ** * * * *
63683478 TATCTGATTTTTTTGCTAAAACTTGTCTCTATTTCATGAGTATATAAGCATAATGTTTGCCATCA
576 TATCTAATTTTTTCACTAAACCTTGTCTCTGTTTCATGAGTATATAAGGATAATGTTGGCCATCA
** * * * *
63683543 AGAGTTGGCATTACCACCAGATGTATCGAAGACTCACAATGTG-TTC-AATGTGTATATGTTATG
641 AGAGTTGGCATTACCACCAGAACTATCGAAGATTCACAATGTGTTTCTAA-GTGTCTATTTTAAG
* * * *
63683606 AAGGTATTGACAAAATCCAGATTATGTC
705 AAGGTATTAACCAAATCCAAATAATGTC
63683634 TGTAACACCC
Statistics
Matches: 1322, Mismatches: 166, Indels: 60
0.85 0.11 0.04
Matches are distributed among these distances:
777 7 0.01
778 496 0.38
779 32 0.02
780 148 0.11
781 1 0.00
783 3 0.00
784 11 0.01
785 405 0.31
786 218 0.16
787 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (778 bp):
AGGAGCCTGTTTGCATTTTAGCCAAAGAAGTGAAAGAGTTAAGAAATAAGAGGATCGCATTAGTA
AAAGTGTTATGGAGGAATCATAATATAGAAGAAGCTACTTGGGAAAGGGAAAGTTTAATGAAAGA
ACAATACACTCAACTTTTCACAAGTATAAATATCAAGGATGAAATTTTCTAAGTGGGGAGAATTG
TAACTGTCTGCCCGCAGAGACCCAATATTCAGCTATTGTCTGGCGTATAATTGGTAAACTCAAGG
GTAGAATTGAGTAAGTAAAGTATTTGTTTTGGCTAAATAGAGCACTTTGTGGGATTAGCCATTTT
GGAAACTCTAATTTTTGGCGAACTCTAGGGTTTGGCAGACTCTTTAGCTAAGTATCCACCAAATG
TTTTGAAAGCACTCGTTAAGTTCACAGTTTGATTAGACTTGTTTTATATTTAGTGTTTGATGACT
TAGAAAGTAATGTTTGGATTTAGTGAAGACTTAGTTAGAACCGAACTAGAATTCTGTAGATGATT
TGACCTAAAACTTGTTAAGTACATTTAATCATGGAATCAAGGGTGTCAATGGAATTATCTAATTT
TTTCACTAAACCTTGTCTCTGTTTCATGAGTATATAAGGATAATGTTGGCCATCAAGAGTTGGCA
TTACCACCAGAACTATCGAAGATTCACAATGTGTTTCTAAGTGTCTATTTTAAGAAGGTATTAAC
CAAATCCAAATAATGTCATACAAATTGAAGACACAAAAGTAGAGTCAAATCTATCTTATGAAA
Found at i:63689643 original size:16 final size:16
Alignment explanation
Indices: 63689622--63689656 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
63689612 TGTTATGGAG
* *
63689622 GAATCATTATATAGAA
1 GAATCATAATATAAAA
63689638 GAATCATAATATAAAA
1 GAATCATAATATAAAA
63689654 GAA
1 GAA
63689657 GCTACTTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.57, C:0.06, G:0.11, T:0.26
Consensus pattern (16 bp):
GAATCATAATATAAAA
Found at i:63691836 original size:40 final size:40
Alignment explanation
Indices: 63691771--63691984 Score: 200
Period size: 40 Copynumber: 5.3 Consensus size: 40
63691761 CATGAGCAAT
* * *
63691771 TGAATGATACCCGGGCTAAGTCCCGAAGACAATTGTGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
* *
63691812 TGAATATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
* * * * *
63691852 TGACTATATCTGGGATAAAACCCGAAGGC-ATTCGTGCAAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG
* * * *
63691892 TTG-TTATATCCGGGCTAATACCCGAAGGCATTTGTGCGAG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
** *
63691932 ACAATATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCTTG
1 TGAATATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG
**
63691972 TGGTTATATCCGG
1 TGAATATATCCGG
63691985 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
39 5 0.04
40 128 0.90
41 9 0.06
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG
Found at i:63700143 original size:80 final size:80
Alignment explanation
Indices: 63700008--63700271 Score: 388
Period size: 80 Copynumber: 3.3 Consensus size: 80
63699998 TGAATGATAC
* * * * * * *
63700008 CCGGGCTAAGTCCCGAAGACAATT-GTGCTAG-TGAATATATCCGGGTTAAGACCCGAAGGCAAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTATATCCGGGCTAATACCCGAAGGCATT
* * *
63700071 TGTGCTAGTGACTATAT
64 TGTGCGAGTCAATATAT
* *
63700088 CTGGGCTAAGACCCGAACGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
63700153 TGCGAGTCAATATAT
66 TGCGAGTCAATATAT
63700168 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
63700233 TGCGAGTCAATATAT
66 TGCGAGTCAATATAT
63700248 CCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCATTC
63700272 ATGCTTGTGG
Statistics
Matches: 168, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
79 3 0.02
80 163 0.97
81 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATATCCGGGCTAATACCCGAAGGCATTTG
TGCGAGTCAATATAT
Found at i:63700269 original size:40 final size:40
Alignment explanation
Indices: 63700008--63700270 Score: 310
Period size: 40 Copynumber: 6.6 Consensus size: 40
63699998 TGAATGATAC
* * * * *
63700008 CCGGGCTAAGTCCCGAAGACAATTGTGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAATATAT
* * * * *
63700048 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAATATAT
* * * ***
63700088 CTGGGCTAAGACCCGAACGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAATATAT
* *
63700128 CCGGGCTAATACCCGAAGGCATTTGTGCGAGTCAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAATATAT
* ***
63700168 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAATATAT
* *
63700208 CCGGGCTAATACCCGAAGGCATTTGTGCGAGTCAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAATATAT
63700248 CCGGGCTAAGACCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCATT
63700271 CATGCTTGTG
Statistics
Matches: 189, Mismatches: 34, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 189 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCAATATAT
Found at i:63706228 original size:30 final size:30
Alignment explanation
Indices: 63706194--63706254 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63706184 TCATTAACTC
*
63706194 AAACTTTGGCAAAATTACAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
63706224 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
63706254 A
1 A
63706255 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:63717560 original size:30 final size:30
Alignment explanation
Indices: 63717526--63717586 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63717516 TCATTAACTC
*
63717526 AAACTTTGGCAAAATTACAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
63717556 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
63717586 A
1 A
63717587 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:63721325 original size:28 final size:28
Alignment explanation
Indices: 63721256--63721356 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63721246 GACAAGATTG
* * * *
63721256 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63721286 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63721314 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63721343 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63721357 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63727551 original size:28 final size:29
Alignment explanation
Indices: 63727507--63727575 Score: 97
Period size: 28 Copynumber: 2.4 Consensus size: 29
63727497 AAAATTGTAC
* *
63727507 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTACGAG-TTGAATACATAT
63727535 AGCACTAAGTGTACGAGTTGAATACATAT
1 AGCACTAAGTGTACGAGTTGAATACATAT
63727564 AGCACTAAGTGT
1 AGCACTAAGTGT
63727576 GCGGATTCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 3 0.08
28 18 0.49
29 16 0.43
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.30
Consensus pattern (29 bp):
AGCACTAAGTGTACGAGTTGAATACATAT
Found at i:63734985 original size:12 final size:12
Alignment explanation
Indices: 63734928--63734959 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
63734918 TTGAGTTCGA
63734928 TTATTTTTATGT
1 TTATTTTTATGT
*
63734940 TTATGTTTATGT
1 TTATTTTTATGT
63734952 TTATTTTT
1 TTATTTTT
63734960 TTCTCTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (12 bp):
TTATTTTTATGT
Found at i:63737932 original size:78 final size:80
Alignment explanation
Indices: 63737797--63737978 Score: 221
Period size: 78 Copynumber: 2.3 Consensus size: 80
63737787 TCGAATGATG
* * *
63737797 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCAGAAGGCATTGTGCTAAGTGACTAAATCAGGACTAAGATCCGAAGGCATTT
63737862 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * *
63737876 TTCCGGGCTAAG-CCAGAAGGCATTGTGC-GAGTTACTAAATCAGTG-TTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCAGAAGGCATTGTGCTAAGTGACTAAATCAG-GACTAAGAT-CCGAAGGCA
63737937 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* * *
63737955 ACCGGGCTATGTCCTGAAGGCATT
1 TCCGGGCTAAGTCCAGAAGGCATT
63737979 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 50 0.56
79 27 0.30
80 11 0.12
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCAGAAGGCATTGTGCTAAGTGACTAAATCAGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:63737987 original size:40 final size:39
Alignment explanation
Indices: 63737798--63737980 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
63737788 CGAATGATGT
* * *
63737798 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCAGAAGGCATTTGTGC-GAGTTACTAAA
* *
63737837 TCCGGACTAAGATCC-GAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCAGAAGGCATTTGTGCGAGTTACTAA-A
63737878 CCGGGCTAAG-CCAGAAGGCA-TTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAA
* * * *
63737915 TCAGTGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTA-AA
* *
63737956 CCGGGCTATGTCCTGAAGGCATTTG
1 CCGGGCTAAGTCCAGAAGGCATTTG
63737981 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
38 25 0.21
39 16 0.13
40 67 0.56
41 12 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63742986 original size:29 final size:29
Alignment explanation
Indices: 63742953--63743142 Score: 220
Period size: 29 Copynumber: 6.6 Consensus size: 29
63742943 GTGACGAGAT
63742953 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
63742982 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
63743011 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63743040 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
63743069 CGGCACTGGGTGTGCGAGCTCGAAGGCTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
63743098 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
63743127 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63743143 AAATCGAGTA
Statistics
Matches: 138, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
28 2 0.01
29 136 0.99
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63749678 original size:30 final size:30
Alignment explanation
Indices: 63749644--63749703 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
63749634 CCATGACAAA
63749644 TTCCACACGGGCTGAG-CACATGCCCATGTG
1 TTCCACACGGGCTG-GCCACATGCCCATGTG
* *
63749674 TTCCATACGGGCTGGCCATATGCCCATGTG
1 TTCCACACGGGCTGGCCACATGCCCATGTG
63749704 GAAGCCCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.18, C:0.32, G:0.27, T:0.23
Consensus pattern (30 bp):
TTCCACACGGGCTGGCCACATGCCCATGTG
Found at i:63752269 original size:27 final size:26
Alignment explanation
Indices: 63752215--63752281 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
63752205 TTAGTTTACC
* *
63752215 AAATTACTAAAATACCCCCAGTTGTA
1 AAATTACCAAAATACCCCCAGTTATA
* *
63752241 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCCAG-TTATA
* *
63752268 AAACTACCCAAATA
1 AAATTACCAAAATA
63752282 TCCTCGATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
26 18 0.55
27 15 0.45
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.24
Consensus pattern (26 bp):
AAATTACCAAAATACCCCCAGTTATA
Found at i:63752313 original size:27 final size:27
Alignment explanation
Indices: 63752283--63752463 Score: 254
Period size: 27 Copynumber: 6.7 Consensus size: 27
63752273 ACCCAAATAT
* * *
63752283 CCTCGATTTATAGAGTTACCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63752310 CCTCGATTTACAGAATTATCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
*
63752337 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* * *
63752364 CCTCGATTTATAGAATTATCGTTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* *
63752391 CCTCGATTTACAAAATTACAATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
63752418 CCTCGATTTACAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCATTTTAC
* *
63752445 CCTTGATTTACAAAATTAC
1 CCTCGATTTACAGAATTAC
63752464 TAAAATACCC
Statistics
Matches: 137, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CCTCGATTTACAGAATTACCATTTTAC
Found at i:63752377 original size:81 final size:81
Alignment explanation
Indices: 63752283--63752463 Score: 283
Period size: 81 Copynumber: 2.2 Consensus size: 81
63752273 ACCCAAATAT
* *
63752283 CCTCGATTTATAGAGTTACCGTTTTACCCTCGATTTACAGAATTATC-ATTTTACCCTCGATTTA
1 CCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTA-CAATTTTACCCTCGATTTA
*
63752347 TAGAATTACCATTTTAC
65 CAGAATTACCATTTTAC
*
63752364 CCTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACAATTTTACCCTCGATTTAC
1 CCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACAATTTTACCCTCGATTTAC
63752429 AGAATTACCATTTTAC
66 AGAATTACCATTTTAC
* * *
63752445 CCTTGATTTACAAAATTAC
1 CCTCGATTTATAGAATTAC
63752464 TAAAATACCC
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 90 0.99
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
CCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACAATTTTACCCTCGATTTAC
AGAATTACCATTTTAC
Found at i:63752472 original size:27 final size:27
Alignment explanation
Indices: 63752388--63752607 Score: 167
Period size: 27 Copynumber: 8.2 Consensus size: 27
63752378 ATTATCGTTT
* **
63752388 TACCCTCGATTTACAAAATTA-CAATTT
1 TACCCTTGATTTACAAAATTACCAA-AA
* * ***
63752415 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTTGATTTACAAAATTACCAAAA
*
63752442 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
63752469 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* ** * *
63752496 TACCCTCGATCAATAAACTTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* ** *
63752523 TACCCCT-AGTTTGTAAAATTACTAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAA
* * **
63752550 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
** *
63752577 TACCCTTGATTTGTAAAA-TACCGAAA
1 TACCCTTGATTTACAAAATTACCAAAA
63752603 TACCC
1 TACCC
63752608 CTATAGGGTA
Statistics
Matches: 162, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
26 13 0.08
27 147 0.91
28 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:63752473 original size:54 final size:53
Alignment explanation
Indices: 63752305--63752492 Score: 232
Period size: 54 Copynumber: 3.5 Consensus size: 53
63752295 GAGTTACCGT
* * * *
63752305 TTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAGAATTACCAT
1 TTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTA-CAA
* * *
63752359 TTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACAA
1 TTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACAA
*
63752412 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAAAATTACTAA
1 -TTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-AA
** * * *
63752467 AATACCCTTGGTTTACAAAATTACCA
1 TTTACCCTCGATTTACAGAATTACCA
63752493 AAATACCCTC
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.02
54 114 0.97
55 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (53 bp):
TTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACAA
Found at i:63752473 original size:81 final size:80
Alignment explanation
Indices: 63752307--63752490 Score: 237
Period size: 81 Copynumber: 2.3 Consensus size: 80
63752297 GTTACCGTTT
* *
63752307 TACCCTCGATTTACAGAATTATCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTA-CATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * **
63752372 TATAGAATTATCGTTT
65 TACAAAATTATCGTAA
*
63752388 TACCCTCGATTTACAAAATTACAATTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTAC-ATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
63752453 TACAAAATTA-C-TAAAA
65 TACAAAATTATCGT--AA
* *
63752469 TACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
63752491 CAAAATACCC
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
79 1 0.01
80 2 0.02
81 88 0.97
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.39
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
ACAAAATTATCGTAA
Found at i:63752500 original size:81 final size:81
Alignment explanation
Indices: 63752334--63752588 Score: 241
Period size: 81 Copynumber: 3.1 Consensus size: 81
63752324 ATTATCATTT
* * ** * *
63752334 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGT--TTTACCCTCGA
1 TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAAAATTA-C-TAAAATACCCTTGG
**
63752397 TTTACAAAATTA-CAATTT
64 TTTACAAAATTACCAA-AA
* *
63752415 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAAAATTACTAAAATACCCTTGGTT
63752480 TACAAAATTACCAAAA
66 TACAAAATTACCAAAA
** *** * * *
63752496 TACCCTCGATCAATA-AACTTACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCCTGG
1 TACCCTCGATTTATAGAA-TTACCATTTTACCCTTGA-TTTATAAAATTACTAAAATACCCTTGG
**
63752559 TTTGTAAAATTACCAAAA
64 TTTACAAAATTACCAAAA
*
63752577 TACCCTTGATTT
1 TACCCTCGATTT
63752589 GTAAAATACC
Statistics
Matches: 144, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
79 1 0.01
80 4 0.03
81 136 0.94
82 3 0.02
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAAAATTACTAAAATACCCTTGGTT
TACAAAATTACCAAAA
Found at i:63752629 original size:27 final size:27
Alignment explanation
Indices: 63752595--63752868 Score: 359
Period size: 27 Copynumber: 10.1 Consensus size: 27
63752585 ATTTGTAAAA
*
63752595 TACCGAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
63752622 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
63752649 GACCGAGATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
63752676 TACTGAAATAACCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
63752703 TACCGAAATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
63752730 TACCGAAATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
63752757 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** * * *
63752784 TACAAAAATACCCTTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
63752811 TACCAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * * * *
63752838 TATCGAGATACCCTTGTGGGGTAAAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
63752865 TACC
1 TACC
63752869 ATTTTGCCCC
Statistics
Matches: 215, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 215 1.00
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAT
Found at i:63753384 original size:31 final size:30
Alignment explanation
Indices: 63753335--63753417 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
63753325 CGCTTATAGT
* *
63753335 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGCCCAGTGATATGATTGATGA
63753365 AAAGGCTTCAGCCCAGTGATATGATTGATGA
1 AAAGGCTTC-GCCCAGTGATATGATTGATGA
63753396 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTC-GCCCAGTGATATG
63753418 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 14 0.29
31 35 0.71
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGCCCAGTGATATGATTGATGA
Found at i:63755778 original size:40 final size:40
Alignment explanation
Indices: 63755629--63755814 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
63755619 TCGAATGATG
* * * * *
63755629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
63755669 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
63755709 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63755749 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
63755790 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGATAAGTCCCGAAGGCATTTG
63755815 AATGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63755806 original size:80 final size:81
Alignment explanation
Indices: 63755629--63755814 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 81
63755619 TCGAATGATG
*
63755629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
*
63755693 TGTGCGAGTTACTAAA
66 TGTGCGAGCTACTAAA
* * * *
63755709 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGA-TAAG-TCCCGAAGGC
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGAATAAATCC-GGACTAAGAT-CCGAAGGC
63755770 ATTTGTGCGAGCTACTATAA
63 ATTTGTGCGAGCTACTA-AA
* *
63755790 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63755815 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
79 2 0.02
80 76 0.84
81 13 0.14
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGCTACTAAA
Found at i:63755832 original size:80 final size:81
Alignment explanation
Indices: 63755665--63755833 Score: 188
Period size: 80 Copynumber: 2.1 Consensus size: 81
63755655 GCTAAGTGAA
*
63755665 TATATCC-GGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGG
1 TATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGG
**
63755729 CATTTGTGCGAGTTAC
66 CATTTGAACGAGTTAC
* * *
63755745 TAAATCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGA
1 TATATCCGGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGA
* *
63755806 AGGTATTTGAATGAG-TAGC
63 AGGCATTTGAACGAGTTA-C
63755825 TATATCCGG
1 TATATCCGG
63755834 TTAAACTCTG
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
79 4 0.05
80 66 0.88
81 5 0.07
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (81 bp):
TATATCCGGGACTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGG
CATTTGAACGAGTTAC
Found at i:63756148 original size:128 final size:128
Alignment explanation
Indices: 63755920--63756178 Score: 518
Period size: 128 Copynumber: 2.0 Consensus size: 128
63755910 CGACAATGAG
63755920 GTATGTTTCGTATGTGCTTTGAATTAGTCGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAA
1 GTATGTTTCGTATGTGCTTTGAATTAGTCGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAA
63755985 TGAGCTACCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGAACATAAGGGTTGGTAATGTGAA
66 TGAGCTACCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGAACATAAGGGTTGGTAATGTGAA
63756048 GTATGTTTCGTATGTGCTTTGAATTAGTCGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAA
1 GTATGTTTCGTATGTGCTTTGAATTAGTCGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAA
63756113 TGAGCTACCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGAACATAAGGGTTGGTAATGTGAA
66 TGAGCTACCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGAACATAAGGGTTGGTAATGTGAA
63756176 GTA
1 GTA
63756179 AGTATGATAT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 131 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (128 bp):
GTATGTTTCGTATGTGCTTTGAATTAGTCGAGCCCTTACAAATAAGTATTCGCTCAGTTGATAAA
TGAGCTACCGGCCTTTGGCTAAGTTGATCTTTTGTGTATGAACATAAGGGTTGGTAATGTGAA
Found at i:63759901 original size:28 final size:28
Alignment explanation
Indices: 63759836--63759936 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
63759826 ATAGTGAATC
*
63759836 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
*
63759865 CGTACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
63759893 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
63759923 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63759937 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 4 0.06
28 22 0.35
29 17 0.27
30 19 0.31
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63767825 original size:28 final size:28
Alignment explanation
Indices: 63767760--63767860 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63767750 ATAGTGAATC
*
63767760 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
63767789 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
63767817 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
63767847 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63767861 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63771392 original size:28 final size:28
Alignment explanation
Indices: 63771327--63771427 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63771317 ATAGTGAATC
*
63771327 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
63771356 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
63771384 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
63771414 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63771428 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63775258 original size:18 final size:18
Alignment explanation
Indices: 63775235--63775269 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
63775225 TGATCGTTGC
63775235 TTCAAGTATTAGCTAGTT
1 TTCAAGTATTAGCTAGTT
63775253 TTCAAGTATTAGCTAGT
1 TTCAAGTATTAGCTAGT
63775270 CCGTACCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (18 bp):
TTCAAGTATTAGCTAGTT
Found at i:63785323 original size:40 final size:41
Alignment explanation
Indices: 63785256--63785390 Score: 143
Period size: 40 Copynumber: 3.3 Consensus size: 41
63785246 TGACTATGTT
* * *
63785256 TGGCACTTTGTGTG-TATTTTGAGATAGCTTCGGCAATATA
1 TGGCACTTAGTGTGCTACTTGGAGATAGCTTCGGCAATATA
*
63785296 TGGCACTTAGTGTGCTACTTGGA-ATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCTACTTGGAGATAGCTTCGGCAATATA
*** *
63785336 TGGCACTTAGTGTGCGGGGTT-GAGATAGCTTCGGCTATGA-A
1 TGGCACTTAGTGTGC-TACTTGGAGATAGCTTCGGCAAT-ATA
*
63785377 AGGCACTTAGTGTG
1 TGGCACTTAGTGTG
63785391 TGAGATTATA
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
40 46 0.55
41 36 0.43
42 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (41 bp):
TGGCACTTAGTGTGCTACTTGGAGATAGCTTCGGCAATATA
Found at i:63785382 original size:41 final size:40
Alignment explanation
Indices: 63785274--63785390 Score: 148
Period size: 40 Copynumber: 2.9 Consensus size: 40
63785264 TGTGTGTATT
* *
63785274 TTGAGATAGCTTCGGCAATATATGGCACTTAGTGTGCTAC
1 TTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGAC
**
63785314 TTG-GAATAGCTTCGGCTATATATGGCACTTAGTGTGCGGGG
1 TTGAG-ATAGCTTCGGCTATATATGGCACTTAGTGTGC-GAC
*
63785355 TTGAGATAGCTTCGGCTATGA-AAGGCACTTAGTGTG
1 TTGAGATAGCTTCGGCTAT-ATATGGCACTTAGTGTG
63785391 TGAGATTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
39 1 0.01
40 34 0.50
41 31 0.46
42 2 0.03
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (40 bp):
TTGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGAC
Found at i:63791777 original size:27 final size:27
Alignment explanation
Indices: 63791743--63791873 Score: 163
Period size: 27 Copynumber: 4.9 Consensus size: 27
63791733 GCGTGTGCAA
*
63791743 TTGTAAAATTATTGAAATACCCCCAAT
1 TTGTAAAATTATCGAAATACCCCCAAT
* * * **
63791770 TTATAAAATTATCAAAATACCCTCGGT
1 TTGTAAAATTATCGAAATACCCCCAAT
* * *
63791797 TTGTAAAATTATCGAAATACCTCTAGT
1 TTGTAAAATTATCGAAATACCCCCAAT
* *
63791824 TTGTAAAATTATTGAAATACCCCCGAT
1 TTGTAAAATTATCGAAATACCCCCAAT
63791851 TTGTAAAATTATCGAAATACCCC
1 TTGTAAAATTATCGAAATACCCC
63791874 TATAGGGTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCCCAAT
Found at i:63791831 original size:54 final size:54
Alignment explanation
Indices: 63791743--63791873 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
63791733 GCGTGTGCAA
* * *
63791743 TTGTAAAATTATTGAAATACCCCCAATTTATAAAATTATCAAAATACCCTCGGT
1 TTGTAAAATTATCGAAATACCCCCAATTTATAAAATTATCAAAATACCCCCGAT
* * * * **
63791797 TTGTAAAATTATCGAAATACCTCTAGTTTGTAAAATTATTGAAATACCCCCGAT
1 TTGTAAAATTATCGAAATACCCCCAATTTATAAAATTATCAAAATACCCCCGAT
63791851 TTGTAAAATTATCGAAATACCCC
1 TTGTAAAATTATCGAAATACCCC
63791874 TATAGGGTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (54 bp):
TTGTAAAATTATCGAAATACCCCCAATTTATAAAATTATCAAAATACCCCCGAT
Found at i:63792289 original size:22 final size:22
Alignment explanation
Indices: 63792241--63792300 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
63792231 TTAATCTGAT
63792241 TATGGCTCTGTGCCAACCTAAA
1 TATGGCTCTGTGCCAACCTAAA
* * * * *
63792263 AATGGCTCTGTGCCATCTTTAC
1 TATGGCTCTGTGCCAACCTAAA
*
63792285 TATGGCTTTGTGCCAA
1 TATGGCTCTGTGCCAA
63792301 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTAAA
Found at i:63794870 original size:41 final size:41
Alignment explanation
Indices: 63794765--63794899 Score: 116
Period size: 41 Copynumber: 3.3 Consensus size: 41
63794755 ACGTTTTGAG
* * **
63794765 ATAGCTTCGGCAATATTTGGCACTTAGTGTGCGA-CTTGGA
1 ATAGTTTCGGCTATATAAGGCACTTAGTGTGCGAGCTTGGA
* *
63794805 ATAGTTTCGGCTATATATGGCACTTAGTGTGCGAGGTT-GA
1 ATAGTTTCGGCTATATAAGGCACTTAGTGTGCGAGCTTGGA
* * **
63794845 GATAGCTTT-GGCTATGA-AAGGCACTTACTGTGCGAGATTATA
1 -ATAG-TTTCGGCTAT-ATAAGGCACTTAGTGTGCGAGCTTGGA
*
63794887 ATAGCTTCGGCTA
1 ATAGTTTCGGCTA
63794900 AGCTTTAGCA
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
40 35 0.44
41 40 0.50
42 5 0.06
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (41 bp):
ATAGTTTCGGCTATATAAGGCACTTAGTGTGCGAGCTTGGA
Found at i:63798146 original size:40 final size:39
Alignment explanation
Indices: 63798082--63798269 Score: 232
Period size: 39 Copynumber: 4.8 Consensus size: 39
63798072 GCTACTCGTT
* * * ** *
63798082 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
63798122 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
63798162 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * *
63798201 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
63798240 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
63798270 CTCGAACATT
Statistics
Matches: 134, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 89 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:63798197 original size:39 final size:39
Alignment explanation
Indices: 63798118--63798270 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
63798108 TATGGTAACC
* *
63798118 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
63798158 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
63798197 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
63798236 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
63798271 TCGAACATTC
Statistics
Matches: 107, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 90 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:63798247 original size:78 final size:79
Alignment explanation
Indices: 63798087--63798269 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
63798077 TCGTTCAAAC
* * **
63798087 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
63798152 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * *
63798167 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
63798231 CAATTTGCACAATT
66 CAACTCGCACAATT
63798245 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
63798270 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 52 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:63806140 original size:40 final size:39
Alignment explanation
Indices: 63806076--63806264 Score: 234
Period size: 40 Copynumber: 4.8 Consensus size: 39
63806066 GCTACTCGTT
* * * ** *
63806076 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
63806116 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
63806156 CAATTGCCTTCGGGCTTAGCCCGGATATCATAAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAA-CTCGCA
* * *
63806196 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
63806235 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
63806265 CTCGAACATT
Statistics
Matches: 135, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 52 0.39
40 83 0.61
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:63806234 original size:79 final size:79
Alignment explanation
Indices: 63806081--63806264 Score: 271
Period size: 79 Copynumber: 2.3 Consensus size: 79
63806071 TCGTTCAAAC
* * **
63806081 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
63806146 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * *
63806161 GCCTTCGGGCTTAGCCCGGATATCATAAGCTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
1 GCCTTCGGGCTTAGCCCGGATATCATAA-CCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
*
63806225 ACAATTCGCACAATT
65 ACAACTCGCACAATT
63806240 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
63806265 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
79 68 0.72
80 27 0.28
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:63806245 original size:39 final size:39
Alignment explanation
Indices: 63806112--63806265 Score: 254
Period size: 40 Copynumber: 3.9 Consensus size: 39
63806102 TATGGTAACC
* *
63806112 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
63806152 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-CT
*
63806192 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
63806231 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
63806266 TCGAACATTC
Statistics
Matches: 108, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 53 0.49
40 55 0.51
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:63808642 original size:25 final size:25
Alignment explanation
Indices: 63808613--63808660 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63808603 TTATAATATG
* * *
63808613 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63808638 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63808661 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63808711 original size:9 final size:9
Alignment explanation
Indices: 63808699--63808755 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63808689 TTTGATAAAC
63808699 ATGATATGT
1 ATGATATGT
*
63808708 ATGATATGCAC
1 ATGATATG--T
63808719 ATGATATGT
1 ATGATATGT
*
63808728 ATGATATGCAC
1 ATGATATG--T
*
63808739 ATGACATGT
1 ATGATATGT
63808748 ATGATATG
1 ATGATATG
63808756 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:63808722 original size:20 final size:20
Alignment explanation
Indices: 63808697--63808759 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
63808687 ATTTTGATAA
63808697 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63808717 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63808737 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63808757 ACA
1 ACA
63808760 CGAGATGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63808893 original size:24 final size:24
Alignment explanation
Indices: 63808813--63808907 Score: 115
Period size: 23 Copynumber: 4.0 Consensus size: 24
63808803 GAGGAAGTGC
63808813 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
**
63808837 -AAAGGGCTTATGCCCTTGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
63808860 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
63808884 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63808908 ACGATAAAGC
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
23 27 0.44
24 17 0.28
25 17 0.28
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:63809134 original size:31 final size:31
Alignment explanation
Indices: 63809099--63809162 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
63809089 TGTTTACCAT
*
63809099 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
63809130 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63809161 AA
1 AA
63809163 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63816096 original size:25 final size:25
Alignment explanation
Indices: 63816067--63816114 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63816057 TTATAATATG
* * *
63816067 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63816092 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63816115 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63816165 original size:9 final size:9
Alignment explanation
Indices: 63816153--63816209 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63816143 TTTGATAAAC
63816153 ATGATATGT
1 ATGATATGT
*
63816162 ATGATATGCAC
1 ATGATATG--T
63816173 ATGATATGT
1 ATGATATGT
*
63816182 ATGATATGCAC
1 ATGATATG--T
*
63816193 ATGACATGT
1 ATGATATGT
63816202 ATGATATG
1 ATGATATG
63816210 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:63816176 original size:20 final size:20
Alignment explanation
Indices: 63816151--63816213 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
63816141 ATTTTGATAA
63816151 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63816171 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63816191 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63816211 ACA
1 ACA
63816214 CGAGATGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63816337 original size:24 final size:25
Alignment explanation
Indices: 63816267--63816341 Score: 111
Period size: 23 Copynumber: 3.1 Consensus size: 25
63816257 GAGGAAGTGC
*
63816267 AAAAGGGATTATGCCCCAGTTATT-
1 AAAAGGGCTTATGCCCCAGTTATTA
*
63816291 -AAAGGGCTTATGCACCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
63816315 AAAAGGGCTT-TGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATTA
63816339 AAA
1 AAA
63816342 GAGGCTAGGC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
23 21 0.46
24 16 0.35
25 9 0.20
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTATTA
Found at i:63816347 original size:24 final size:24
Alignment explanation
Indices: 63816278--63816361 Score: 93
Period size: 24 Copynumber: 3.5 Consensus size: 24
63816268 AAAGGGATTA
63816278 TGCCCCAGTTATT-AAAG-GGCTT
1 TGCCCCAGTTATTAAAAGAGGCTT
*
63816300 ATGCACCAGTTATTAAAA-AGGGCTT
1 -TGCCCCAGTTATTAAAAGA-GGCTT
*
63816325 TGCCCCAGTTATTAAAAGAGGCTA
1 TGCCCCAGTTATTAAAAGAGGCTT
*
63816349 GGCCTCCAGTTAT
1 TGCC-CCAGTTAT
63816362 ATGATAAAGC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
23 12 0.23
24 26 0.50
25 14 0.27
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
TGCCCCAGTTATTAAAAGAGGCTT
Found at i:63816591 original size:31 final size:31
Alignment explanation
Indices: 63816553--63816616 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63816543 CCGTTTACAT
*
63816553 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
63816584 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63816615 AA
1 AA
63816617 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63821286 original size:28 final size:28
Alignment explanation
Indices: 63821217--63821317 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63821207 GACAAGATTG
* * * *
63821217 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63821247 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63821275 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63821304 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63821318 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63821311 original size:29 final size:28
Alignment explanation
Indices: 63821246--63821317 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
63821236 AAAATTGTAC
*
63821246 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
63821274 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
63821303 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63821318 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:63828840 original size:28 final size:28
Alignment explanation
Indices: 63828771--63828871 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63828761 GACAAGATTG
* * * *
63828771 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63828801 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63828829 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63828858 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63828872 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63828865 original size:29 final size:28
Alignment explanation
Indices: 63828800--63828871 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
63828790 AAAATTGTAC
*
63828800 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
63828828 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
63828857 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63828872 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:63832795 original size:218 final size:218
Alignment explanation
Indices: 63832412--63832851 Score: 871
Period size: 218 Copynumber: 2.0 Consensus size: 218
63832402 CCTTTTAGCT
*
63832412 TTAATCCGGTGACGGACACAGGTTAGGGTGGTTACATAAATGATTAATACATTATTTTAATTAAA
1 TTAAGCCGGTGACGGACACAGGTTAGGGTGGTTACATAAATGATTAATACATTATTTTAATTAAA
63832477 ATGCATTATTGTGGAACTAAATGATAGCTCAATGAGCACTATTATGGCACTAAATGTGAATATGA
66 ATGCATTATTGTGGAACTAAATGATAGCTCAATGAGCACTATTATGGCACTAAATGTGAATATGA
63832542 TAAATGATTTTAATGCATATATGTGTCTCCAATGTATGGTGATAGAGTCCACTTTTATGTTTCAT
131 TAAATGATTTTAATGCATATATGTGTCTCCAATGTATGGTGATAGAGTCCACTTTTATGTTTCAT
63832607 GTTTCCAAGTTGCCAAATTATCA
196 GTTTCCAAGTTGCCAAATTATCA
63832630 TTAAGCCGGTGACGGACACAGGTTAGGGTGGTTACATAAATGATTAATACATTATTTTAATTAAA
1 TTAAGCCGGTGACGGACACAGGTTAGGGTGGTTACATAAATGATTAATACATTATTTTAATTAAA
63832695 ATGCATTATTGTGGAACTAAATGATAGCTCAATGAGCACTATTATGGCACTAAATGTGAATATGA
66 ATGCATTATTGTGGAACTAAATGATAGCTCAATGAGCACTATTATGGCACTAAATGTGAATATGA
63832760 TAAATGATTTTAATGCATATATGTGTCTCCAATGTATGGTGATAGAGTCCACTTTTATGTTTCAT
131 TAAATGATTTTAATGCATATATGTGTCTCCAATGTATGGTGATAGAGTCCACTTTTATGTTTCAT
63832825 GTTTCCAAGTTGCCAAATTATCA
196 GTTTCCAAGTTGCCAAATTATCA
63832848 TTAA
1 TTAA
63832852 TTGATTAATA
Statistics
Matches: 221, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 221 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (218 bp):
TTAAGCCGGTGACGGACACAGGTTAGGGTGGTTACATAAATGATTAATACATTATTTTAATTAAA
ATGCATTATTGTGGAACTAAATGATAGCTCAATGAGCACTATTATGGCACTAAATGTGAATATGA
TAAATGATTTTAATGCATATATGTGTCTCCAATGTATGGTGATAGAGTCCACTTTTATGTTTCAT
GTTTCCAAGTTGCCAAATTATCA
Found at i:63835185 original size:3 final size:3
Alignment explanation
Indices: 63835172--63835243 Score: 74
Period size: 3 Copynumber: 23.7 Consensus size: 3
63835162 AATACTAAAT
* * * *
63835172 TAA TCA TAA TAA TAA TAA TAA TAA TAA TAG TAA CAA TAA TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
63835220 TAA TAGA -AT TAA TTAA TAA TAA TA
1 TAA TA-A TAA TAA -TAA TAA TAA TA
63835244 TTAAAATTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
3 52 0.93
4 4 0.07
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:63836039 original size:7 final size:7
Alignment explanation
Indices: 63836027--63836053 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
63836017 TGAAGTTAAA
63836027 ATAAAAT
1 ATAAAAT
63836034 ATAAAAT
1 ATAAAAT
63836041 ATAAAAT
1 ATAAAAT
63836048 ATAAAA
1 ATAAAA
63836054 GGATGGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
ATAAAAT
Found at i:63838049 original size:46 final size:46
Alignment explanation
Indices: 63837999--63838171 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
63837989 TGGTTGAGCA
*
63837999 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63838045 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63838090 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63838138 CCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63838172 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63838157 original size:93 final size:93
Alignment explanation
Indices: 63837996--63838166 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63837986 GGATGGTTGA
* *
63837996 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63838061 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
63838089 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63838154 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63838167 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:63841878 original size:79 final size:80
Alignment explanation
Indices: 63841780--63841949 Score: 243
Period size: 79 Copynumber: 2.1 Consensus size: 80
63841770 GCCACTAGCT
* ** **
63841780 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTTGCACAAACACCTTCGGGACTTAGCCCGG
63841845 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
63841859 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTTGCACAAACACCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTTGCACAAACACCTTCGGGACTTAGCCCGG
* *
63841924 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
**
63841939 TGAATGCCTTC
1 CAAATGCCTTC
63841950 CCGGAATTAG
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 59 0.74
80 21 0.26
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTTGCACAAACACCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:63841934 original size:40 final size:40
Alignment explanation
Indices: 63841780--63841928 Score: 228
Period size: 40 Copynumber: 3.8 Consensus size: 40
63841770 GCCACTAGCT
* **
63841780 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTTGCA
*
63841820 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTTGCA
*
63841859 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTTGCA
**
63841899 CAAACACCTTCGGGACTTAGCCCGGATATA
1 CAAATGCCTTCGGGACTTAGCCCGGATATA
63841929 GTAGCTCGCA
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 36 0.36
40 65 0.64
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTTGCA
Found at i:63841949 original size:40 final size:40
Alignment explanation
Indices: 63841780--63841949 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
63841770 GCCACTAGCT
* ** *
63841780 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
63841820 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* *
63841859 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
** * *
63841899 CAAACACCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
**
63841939 TGAATGCCTTC
1 CAAATGCCTTC
63841950 CCGGAATTAG
Statistics
Matches: 116, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
39 36 0.31
40 80 0.69
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:63844623 original size:88 final size:88
Alignment explanation
Indices: 63844496--63844792 Score: 454
Period size: 88 Copynumber: 3.4 Consensus size: 88
63844486 GCTCTATTGC
** *
63844496 AACTTC-AGAGAGATAAGGATT-GTGGCTTCAATCTACTCCAATGTAATTTCAGGGAGAAGAGAT
1 AACTTCAAG-GAGATAAGG-TTGGTGGCTTCAATCCGCTCCAATGTAATTTTAGGGAGAAGAGAT
*
63844559 TTGTAGCTTCGATCTACTCCGCTGG
64 TTGTAGCTTCGATCTACTCCACTGG
*
63844584 AACTTCAAGGAGATAAGGTTGGTGGCTTTAATCCGCTCCAATGTAATTTTAGGGAGAAGAGATTT
1 AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCCGCTCCAATGTAATTTTAGGGAGAAGAGATTT
*
63844649 ATAGCTTCGATCTACTCCACTGG
66 GTAGCTTCGATCTACTCCACTGG
* * *
63844672 AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCCGCCCCAATGTAATTTTAGGGATAATAGATTT
1 AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCCGCTCCAATGTAATTTTAGGGAGAAGAGATTT
* *
63844737 GTAGCTTCGATCTACTTCACTAG
66 GTAGCTTCGATCTACTCCACTGG
*
63844760 AACTTCAAGGAGATAAGGCTGGTGGCTTCAATC
1 AACTTCAAGGAGATAAGGTTGGTGGCTTCAATC
63844793 TACTCCACTG
Statistics
Matches: 193, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
87 2 0.01
88 189 0.98
89 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (88 bp):
AACTTCAAGGAGATAAGGTTGGTGGCTTCAATCCGCTCCAATGTAATTTTAGGGAGAAGAGATTT
GTAGCTTCGATCTACTCCACTGG
Found at i:63844808 original size:44 final size:44
Alignment explanation
Indices: 63844379--63844808 Score: 217
Period size: 44 Copynumber: 9.7 Consensus size: 44
63844369 GGAAAAGATA
* ** ** *
63844379 TTTGTAGCTTCAATCTACTCTGCTAAAACTTCAAGGAGATAAGA
1 TTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGG
* * * * * *
63844423 ATTG-GGAATTTCAACCTACTCCACTGCAACTTCAGGGAGATATGG
1 TTTGTGG--CTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGG
** ** * * * *
63844468 TTTGTGTATTTTTATCCTGCTCTATTGCAACTTC-AGAGAGATAAGG
1 TTTGTG-GCTTCAAT-CTACTCCACTGTAACTTCAAG-GAGATAAGG
* * * * *
63844514 ATTGTGGCTTCAATCTACTCCAATGTAATTTCAGGGAGA-AGAGA
1 TTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA-AGG
* * * *
63844558 TTTGTAGCTTCGATCTACTCCGCTGGAACTTCAAGGAGATAAGG
1 TTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGG
* * ** * * * * *
63844602 TTGGTGGCTTTAATCCGCTCCAATGTAATTTTAGGGAGA-AGAGA
1 TTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATA-AGG
* * * *
63844646 TTTATAGCTTCGATCTACTCCACTGGAACTTCAAGGAGATAAGG
1 TTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGG
* ** * * ** *
63844690 TTGGTGGCTTCAATCCGCCCCAATGTAA-TTTTAGG-GATAATAGA
1 TTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGAT-A-AGG
* * *
63844734 TTTGTAGCTTCGATCTACTTCACTAG-AACTTCAAGGAGATAAGG
1 TTTGTGGCTTCAATCTACTCCACT-GTAACTTCAAGGAGATAAGG
* * *
63844778 CTGGTGGCTTCAATCTACTCCACTGCAACTT
1 TTTGTGGCTTCAATCTACTCCACTGTAACTT
63844809 TAGGAAGATA
Statistics
Matches: 273, Mismatches: 96, Indels: 34
0.68 0.24 0.08
Matches are distributed among these distances:
42 3 0.01
43 10 0.04
44 178 0.65
45 50 0.18
46 32 0.12
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (44 bp):
TTTGTGGCTTCAATCTACTCCACTGTAACTTCAAGGAGATAAGG
Found at i:63845012 original size:143 final size:143
Alignment explanation
Indices: 63844741--63845061 Score: 448
Period size: 143 Copynumber: 2.2 Consensus size: 143
63844731 AGATTTGTAG
* * *
63844741 CTTCGATCTACTTCACTAGAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAA
1 CTTCGATCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAA
* * * * * *
63844806 CTTTAGGAAGATAAGATTCGCCATAGTTTATAGCTTTAATATGTTCCACTACAACGTCAAGGAAG
66 CTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGTCAAGGAAA
63844871 TAAGATTCGCTGT
131 TAAGATTCGCTGT
* * * *
63844884 CTTC-AGTCTGCTCCACTATAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCA
1 CTTCGA-TCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCA
* * *
63844948 ACTTCAGGAAGATAAGATCCGCCATAATTCGTAGCTTCAATCTGTTCCACTGCAAC-TCCAAGGA
65 ACTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGT-CAAGGA
*
63845012 AATAAGATTCGCTTT
129 AATAAGATTCGCTGT
*
63845027 CTTCGATCTGCTCCACTACAACTTCAAAGAGATAA
1 CTTCGATCTGCTCCACTACAACTTCAAGGAGATAA
63845062 TATCTATAAC
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
142 2 0.01
143 152 0.98
144 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (143 bp):
CTTCGATCTGCTCCACTACAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAA
CTTCAGGAAGATAAGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGTCAAGGAAA
TAAGATTCGCTGT
Found at i:63845075 original size:143 final size:143
Alignment explanation
Indices: 63844754--63845108 Score: 392
Period size: 143 Copynumber: 2.5 Consensus size: 143
63844744 CGATCTACTT
* * * * ** *
63844754 CACTAGAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGCAACTTTAGGAAGATA
1 CACTACAACTTCAAAGAGATAAAGCTGATAACTTCAATCTACTCCACTGCAACTTCAGGAAGATA
* * * * *
63844819 AGATTCGCCATAGTTTATAGCTTTAATATGTTCCACTACAACGTCAAGGAAGTAAGATTCGCTGT
66 AGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGTCAAGGAAATAAGATTCGCTGT
63844884 CTTCAGTCTGCTC
131 CTTCAGTCTGCTC
* * ** * * ** *
63844897 CACTATAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
1 CACTACAACTTCAAAGAGATAAAGCTGATAACTTCAATCTACTCCACTGCAACTTCAGGAAGATA
* * * *
63844962 AGATCCGCCATAATTCGTAGCTTCAATCTGTTCCACTGCAAC-TCCAAGGAAATAAGATTCGCTT
66 AGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGT-CAAGGAAATAAGATTCGCTG
63845026 TCTTC-GATCTGCTC
130 TCTTCAG-TCTGCTC
* * * *
63845040 CACTACAACTTCAAAGAGATAATATCT-ATAACTTCAATATACTCCACTGCTACTTCAGGGAGAT
1 CACTACAACTTCAAAGAGATAA-AGCTGATAACTTCAATCTACTCCACTGCAACTTCAGGAAGAT
*
63845104 GAGAT
65 AAGAT
63845109 TTATGACTTC
Statistics
Matches: 181, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
142 2 0.01
143 177 0.98
144 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (143 bp):
CACTACAACTTCAAAGAGATAAAGCTGATAACTTCAATCTACTCCACTGCAACTTCAGGAAGATA
AGATCCGCCATAATTCATAGCTTCAATATGTTCCACTACAACGTCAAGGAAATAAGATTCGCTGT
CTTCAGTCTGCTC
Found at i:63845153 original size:44 final size:44
Alignment explanation
Indices: 63845027--63845154 Score: 157
Period size: 44 Copynumber: 2.9 Consensus size: 44
63845017 GATTCGCTTT
* * * * * * *
63845027 CTTCGATCTGCTCCACTACAACTTCAAAGAGATAATATCTATAA
1 CTTCAATCTGCTCCACTGCTACTTCAGAGAGATGAGATTTATAA
* * * *
63845071 CTTCAATATACTCCACTGCTACTTCAGGGAGATGAGATTTATGA
1 CTTCAATCTGCTCCACTGCTACTTCAGAGAGATGAGATTTATAA
63845115 CTTCAATCTGCTCCACTGCTACTTCAGAGAGATGAGATTT
1 CTTCAATCTGCTCCACTGCTACTTCAGAGAGATGAGATTT
63845155 GTGGATTCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCTACTTCAGAGAGATGAGATTTATAA
Found at i:63845554 original size:46 final size:46
Alignment explanation
Indices: 63845504--63845592 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
63845494 TTTTGTGGTT
* * *
63845504 TCTTCCATCTATCCCACTGCAACTCAGGGGTATAGGATTTGTACCA
1 TCTTCAATCAATCCCACTGCAACTCAGGGGTATAAGATTTGTACCA
* *
63845550 TCTTCAATCAATCCCATTGCAGCTCAGGGGTATAAGATTTGTA
1 TCTTCAATCAATCCCACTGCAACTCAGGGGTATAAGATTTGTA
63845593 TCTTCCCACT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (46 bp):
TCTTCAATCAATCCCACTGCAACTCAGGGGTATAAGATTTGTACCA
Found at i:63846519 original size:17 final size:18
Alignment explanation
Indices: 63846497--63846530 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63846487 GGCCTCTCCT
*
63846497 TTTTCT-TTTCTTTTTTC
1 TTTTCTCTTCCTTTTTTC
63846514 TTTTCTCTTCCTTTTTT
1 TTTTCTCTTCCTTTTTT
63846531 TTTGGGGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTCTTCCTTTTTTC
Found at i:63847084 original size:23 final size:22
Alignment explanation
Indices: 63847058--63847101 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63847048 TCCCACAATC
*
63847058 TTTTTGTGTTTTTTTTATTTTTA
1 TTTTTGTG-TTTTTATATTTTTA
*
63847081 TTTTTTTGTTTTTATATTTTT
1 TTTTTGTGTTTTTATATTTTT
63847102 TTGTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.09, C:0.00, G:0.07, T:0.84
Consensus pattern (22 bp):
TTTTTGTGTTTTTATATTTTTA
Found at i:63847085 original size:16 final size:16
Alignment explanation
Indices: 63847066--63847109 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
63847056 TCTTTTTGTG
63847066 TTTTTTT-TATTTT-TA
1 TTTTTTTGT-TTTTATA
63847081 TTTTTTTGTTTTTATA
1 TTTTTTTGTTTTTATA
63847097 TTTTTTTGTTTTT
1 TTTTTTTGTTTTT
63847110 TTTTTGGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.41
16 16 0.59
ACGTcount: A:0.09, C:0.00, G:0.05, T:0.86
Consensus pattern (16 bp):
TTTTTTTGTTTTTATA
Found at i:63847086 original size:14 final size:13
Alignment explanation
Indices: 63847067--63847114 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
63847057 CTTTTTGTGT
63847067 TTTTTTTATTTTTA
1 TTTTTTT-TTTTTA
63847081 TTTTTTTGTTTTTA
1 TTTTTTT-TTTTTA
*
63847095 TATTTTTTTGTTT-
1 T-TTTTTTTTTTTA
63847108 TTTTTTT
1 TTTTTTT
63847115 GGCTGCCTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 6 0.19
13 1 0.03
14 18 0.58
15 6 0.19
ACGTcount: A:0.08, C:0.00, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTTTTTA
Found at i:63847094 original size:20 final size:20
Alignment explanation
Indices: 63847058--63847113 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
63847048 TCCCACAATC
63847058 TTTTTGTGTTTTTTTTAT-TT
1 TTTTTGT-TTTTTTTTATATT
63847078 TTATTT-TTTTGTTTTTATATT
1 TT-TTTGTTTT-TTTTTATATT
63847099 TTTTTGTTTTTTTTT
1 TTTTTGTTTTTTTTT
63847114 TGGCTGCCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 3 0.09
20 18 0.56
21 11 0.34
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (20 bp):
TTTTTGTTTTTTTTTATATT
Found at i:63853840 original size:40 final size:40
Alignment explanation
Indices: 63853781--63853988 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
63853771 CAATTGAATG
* * * *
63853781 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
63853821 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63853861 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63853901 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
63853941 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
63853981 ATATCCGG
1 ATATCCGG
63853989 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63853919 original size:80 final size:80
Alignment explanation
Indices: 63853782--63853988 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
63853772 AATTGAATGA
* * ** * * *
63853782 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
63853847 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
63853860 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
63853925 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
63853942 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
63853989 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:63861892 original size:40 final size:40
Alignment explanation
Indices: 63861792--63861997 Score: 166
Period size: 40 Copynumber: 5.2 Consensus size: 40
63861782 ATTGAATGAT
* * * * * * *
63861792 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTAC
* * * * *
63861832 ATCCAGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTAC
* *
63861872 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAGTTAC
* * * *
63861912 ATCTGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT-C
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTAC
* * * *
63861951 TATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCATGTGGTTAT
1 -ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAGTTAC
63861992 ATCCGG
1 ATCCGG
63861998 TTGTATTCCG
Statistics
Matches: 133, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
39 5 0.04
40 126 0.95
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGTTAC
Found at i:63863416 original size:27 final size:27
Alignment explanation
Indices: 63863355--63863451 Score: 167
Period size: 27 Copynumber: 3.6 Consensus size: 27
63863345 AAATTTGTAC
63863355 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
* *
63863383 AGAACTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
63863410 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
63863437 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63863452 GACTCACTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 49 0.75
28 16 0.25
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:63863463 original size:54 final size:55
Alignment explanation
Indices: 63863355--63863463 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 55
63863345 AAATTTGTAC
* *
63863355 AGCACTAAGTGTGCGAGTTTGATTATATAGAACTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGAACTAAGTGTGCGAGCTCACTATAT
*
63863410 AGCACTAAGTGTGCGAG-TTGATTATATAGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGAACTAAGTGTGCGAG-CTCACTATAT
63863464 GCTTTTGCAT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
53 1 0.02
54 32 0.64
55 17 0.34
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGAACTAAGTGTGCGAGCTCACTATAT
Found at i:63871386 original size:27 final size:27
Alignment explanation
Indices: 63871329--63871425 Score: 176
Period size: 27 Copynumber: 3.6 Consensus size: 27
63871319 AAATTTGTAC
63871329 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
*
63871357 AGCACTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
63871384 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
63871411 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63871426 GACTCACTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 50 0.75
28 17 0.25
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:63871437 original size:54 final size:55
Alignment explanation
Indices: 63871329--63871437 Score: 177
Period size: 54 Copynumber: 2.0 Consensus size: 55
63871319 AAATTTGTAC
* *
63871329 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTCACTATAT
63871384 AGCACTAAGTGTGCGAG-TTGATTATATAGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-CTCACTATAT
63871438 GCTTTTGCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
53 1 0.02
54 33 0.65
55 17 0.33
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63873676 original size:3 final size:3
Alignment explanation
Indices: 63873668--63873721 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
63873658 TTAATGATAC
* *
63873668 AAT AAT AAT AAT AGT AGT AAT AAT AAT AAT AAT AAT AAT AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
63873714 AAT AAT AA
1 AAT AAT AA
63873722 AATTAATTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:63873745 original size:21 final size:19
Alignment explanation
Indices: 63873691--63873732 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
63873681 GTAGTAATAA
63873691 TAATAATAATAATAA-TAAT
1 TAATAATAATAA-AATTAAT
63873710 TAATAATAATAAAATTAAT
1 TAATAATAATAAAATTAAT
63873729 TAAT
1 TAAT
63873733 TTAATGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TAATAATAATAAAATTAAT
Found at i:63877307 original size:14 final size:14
Alignment explanation
Indices: 63877288--63877315 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63877278 AATAAAAGGC
63877288 AAAGATTATAAATA
1 AAAGATTATAAATA
63877302 AAAGATTATAAATA
1 AAAGATTATAAATA
63877316 TTATACATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
AAAGATTATAAATA
Found at i:63888861 original size:2 final size:2
Alignment explanation
Indices: 63888854--63888893 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
63888844 TGTGGTAAGA
63888854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63888894 GAAGAATAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63891373 original size:39 final size:39
Alignment explanation
Indices: 63891313--63891618 Score: 505
Period size: 39 Copynumber: 8.0 Consensus size: 39
63891303 AAGACACTGA
63891313 AAATGTATCC-GGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
63891351 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63891390 AAATATATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63891428 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63891467 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63891506 AAATGTAT-CGGGCCAAAGT-CC-CAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63891542 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63891581 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
63891619 ATAATATAAT
Statistics
Matches: 253, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
36 23 0.09
37 13 0.05
38 58 0.23
39 159 0.63
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:63891414 original size:77 final size:78
Alignment explanation
Indices: 63891313--63891618 Score: 505
Period size: 77 Copynumber: 4.0 Consensus size: 78
63891303 AAGACACTGA
*
63891313 AAATGTATCC-GGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCA
63891377 GGCTTCGTGCTGG
66 GGCTTCGTGCTGG
* *
63891390 AAATATATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCA
63891454 GGCTTCGTGCTGG
66 GGCTTCGTGCTGG
*
63891467 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTAT-CGGGCCAAAGT-CC-CA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCA
63891529 GGCTTCGTGCTGG
66 GGCTTCGTGCTGG
* **
63891542 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCGCA
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCA
*
63891607 GGCTTTGTGCTG
66 GGCTTCGTGCTG
63891619 ATAATATAAT
Statistics
Matches: 213, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
75 60 0.28
76 11 0.05
77 95 0.45
78 47 0.22
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (78 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGCA
GGCTTCGTGCTGG
Found at i:63891599 original size:114 final size:116
Alignment explanation
Indices: 63891313--63891626 Score: 528
Period size: 114 Copynumber: 2.7 Consensus size: 116
63891303 AAGACACTGA
*
63891313 AAATGTATCC-GGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
*
63891377 GGCTTCGTGCTGGAAATATATCCGGGCTAAAGTCCGCAGGCTTCGTGCTGG
66 GGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCGCAGGCTTCGTGCTGG
* *
63891428 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGACTAAAGTCCCGCA
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
*
63891493 GGCTTCGTGCTGGAAATGTAT-CGGGCCAAAGTCC-CAGGCTTCGTGCTGG
66 GGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCGCAGGCTTCGTGCTGG
*
63891542 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCGCA
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
*
63891607 GGCTTTGTGCT-GATAATATA
66 GGCTTCGTGCTGGA-AATATA
63891627 ATTTCGGGTT
Statistics
Matches: 187, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
113 2 0.01
114 92 0.49
115 21 0.11
116 72 0.39
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.24
Consensus pattern (116 bp):
AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
GGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCGCAGGCTTCGTGCTGG
Done.