Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 213 of 328
Found at i:63898580 original size:28 final size:27
Alignment explanation
Indices: 63898514--63898583 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
63898504 ATAGTGAGTC
*
63898514 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
63898541 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
63898569 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63898584 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:63899074 original size:2 final size:2
Alignment explanation
Indices: 63899061--63899092 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
63899051 CATACTTATG
*
63899061 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63899093 CACTTCCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:63900534 original size:39 final size:39
Alignment explanation
Indices: 63900476--63900786 Score: 478
Period size: 39 Copynumber: 8.0 Consensus size: 39
63900466 AAGACACTGA
*
63900476 AAATGTATCTGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* * *
63900515 AAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTGTTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* *
63900554 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* * *
63900593 AAATATATCCGGGCCAAAGTCCTGCAGGCTTCATGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* *
63900632 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
*
63900671 AAATGTATCTGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
63900710 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* ** *
63900749 AAATGTATTCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTG
63900787 ATAATATAAT
Statistics
Matches: 249, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 249 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:63903089 original size:22 final size:20
Alignment explanation
Indices: 63903037--63903083 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
63903027 TGGGCTGAGG
*
63903037 ACACGAGTGTGTCCCATGCC
1 ACACGGGTGTGTCCCATGCC
63903057 ACACGGGTGTGTCCCATGCC
1 ACACGGGTGTGTCCCATGCC
*
63903077 ATACGGG
1 ACACGGG
63903084 CATGTGTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (20 bp):
ACACGGGTGTGTCCCATGCC
Found at i:63908756 original size:13 final size:13
Alignment explanation
Indices: 63908738--63908808 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
63908728 AAATTTTTTC
63908738 AAAGCACTTCTCA
1 AAAGCACTTCTCA
63908751 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
63908764 AAAGTACTTCTCA
1 AAAGCACTTCTCA
*
63908777 AAAGCACTTCTCC
1 AAAGCACTTCTCA
* *
63908790 ACAGCACTTTTCA
1 AAAGCACTTCTCA
63908803 AAAGCA
1 AAAGCA
63908809 ATGAAGAACT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.38, C:0.30, G:0.08, T:0.24
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:63909083 original size:51 final size:49
Alignment explanation
Indices: 63908945--63909085 Score: 165
Period size: 51 Copynumber: 2.8 Consensus size: 49
63908935 AGGTGGAAGC
* * * * *
63908945 AGTGGCAATATATCTGTAAATCAGTGGTGGCTTGTCTACAAAACTTATC
1 AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAATTATA
* *
63908994 AGTGGCAGTATATCTGCATATCAGTGGTGGCTTATCCACAAAAGTATTATA
1 AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAA--ATTATA
* * * *
63909045 AGTGGCAGTTTATTTGCAAATCAGTAGTGGTTTGTCCACAA
1 AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAA
63909086 CTGGTGTTTC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 38 0.49
51 39 0.51
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (49 bp):
AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAATTATA
Found at i:63927343 original size:49 final size:49
Alignment explanation
Indices: 63927287--63927413 Score: 209
Period size: 49 Copynumber: 2.6 Consensus size: 49
63927277 TACATATATG
* * * *
63927287 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
63927336 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
*
63927385 TGTGATGAGGCCTAATGGCCGATGTGATG
1 TGTGATAAGGCCTAATGGCCGATGTGATG
63927414 TGTATATGTG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
Found at i:63927421 original size:35 final size:35
Alignment explanation
Indices: 63927379--63927448 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
63927369 TGAAAGTGGA
63927379 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG
1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG
63927414 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG
1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG
63927449 AATGTGAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.11, G:0.34, T:0.31
Consensus pattern (35 bp):
TGTATATGTGATGAGGCCTAATGGCCGATGTGATG
Found at i:63927468 original size:49 final size:49
Alignment explanation
Indices: 63927414--63927571 Score: 307
Period size: 49 Copynumber: 3.2 Consensus size: 49
63927404 CGATGTGATG
*
63927414 TGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
63927463 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
63927512 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
63927561 TGTATATGTGA
1 TGTATATGTGA
63927572 ATGTGGTGAA
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 108 1.00
ACGTcount: A:0.27, C:0.08, G:0.34, T:0.32
Consensus pattern (49 bp):
TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
Found at i:63927471 original size:84 final size:84
Alignment explanation
Indices: 63927330--63927494 Score: 312
Period size: 84 Copynumber: 2.0 Consensus size: 84
63927320 TGAAAGTGTA
63927330 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG
1 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG
63927395 CCTAATGGCCGATGTGATG
66 CCTAATGGCCGATGTGATG
* *
63927414 TGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGG
1 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG
63927479 CCTAATGGCCGATGTG
66 CCTAATGGCCGATGTG
63927495 GTGAATGTGA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 79 1.00
ACGTcount: A:0.27, C:0.10, G:0.33, T:0.30
Consensus pattern (84 bp):
TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG
CCTAATGGCCGATGTGATG
Found at i:63927482 original size:133 final size:129
Alignment explanation
Indices: 63927287--63927618 Score: 465
Period size: 133 Copynumber: 2.5 Consensus size: 129
63927277 TACATATATG
* * *
63927287 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
63927352 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGTGT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTG--GTG-
63927417 ATA
128 A-A
* *
63927420 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* *
63927485 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
* *
63927549 TGTGAAAGTGTATG--TATATGTG--AATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG
1 TGTG--A-TG-AGGCCTA-ATG-GCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGG
63927610 CCTAATGGC
60 CCTAATGGC
63927619 TAATGTAAAA
Statistics
Matches: 182, Mismatches: 11, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
129 5 0.03
130 1 0.01
131 51 0.28
132 5 0.03
133 120 0.66
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.30
Consensus pattern (129 bp):
TGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
Found at i:63927577 original size:33 final size:33
Alignment explanation
Indices: 63927539--63927604 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
63927529 CTAATGGCCG
63927539 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA
1 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA
63927572 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA
1 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA
63927605 TAAGGCCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (33 bp):
ATGTGGTGAATGTGAAAGTGTATGTATATGTGA
Found at i:63927770 original size:37 final size:37
Alignment explanation
Indices: 63927720--63927804 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
63927710 GGAATATGTT
*
63927720 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
63927757 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
63927794 CCGGGTAAGAC
1 CCGGGTAAGAC
63927805 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:63929698 original size:40 final size:40
Alignment explanation
Indices: 63929616--63929700 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
63929606 GAGAATTGAG
** * * *
63929616 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
* *
63929656 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
63929696 AGTGA
1 AGTGA
63929701 CGTGTATTCG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
Found at i:63929940 original size:29 final size:29
Alignment explanation
Indices: 63929898--63930058 Score: 274
Period size: 29 Copynumber: 5.7 Consensus size: 29
63929888 GCGAATGATT
63929898 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
63929927 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
63929956 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
63929985 GAGGCACTATGTGTGTGAGATC-GTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
63930013 GAGGCACTATGTGT--GAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
63930040 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
63930059 TTTTTCAACA
Statistics
Matches: 126, Mismatches: 3, Indels: 6
0.93 0.02 0.04
Matches are distributed among these distances:
26 6 0.05
27 18 0.14
28 20 0.16
29 82 0.65
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:63930639 original size:40 final size:41
Alignment explanation
Indices: 63930541--63930639 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
63930531 TTCGAATGGT
* ** * *
63930541 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
63930582 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
63930623 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
63930640 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:63933415 original size:49 final size:49
Alignment explanation
Indices: 63933359--63933646 Score: 427
Period size: 49 Copynumber: 6.1 Consensus size: 49
63933349 TACATATATG
* * * *
63933359 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
63933408 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
63933457 TGTGATGAGGCCTAATGGCCGA--TG-TG-A--T-AAA-TG--TGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
63933496 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
63933545 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
63933594 TGTGATGAGGCCTAATGG-CGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
63933642 TGTGA
1 TGTGA
63933647 CCGATGTGGT
Statistics
Matches: 223, Mismatches: 6, Indels: 21
0.89 0.02 0.08
Matches are distributed among these distances:
39 28 0.13
41 4 0.02
42 5 0.02
43 2 0.01
45 2 0.01
46 5 0.02
47 4 0.02
48 35 0.16
49 138 0.62
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:63933495 original size:39 final size:39
Alignment explanation
Indices: 63933451--63933530 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
63933441 TGAAAGTGGA
63933451 TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG
1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG
*
63933490 TGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG
63933529 TG
1 TG
63933531 AAAGTGTATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.26, C:0.10, G:0.33, T:0.31
Consensus pattern (39 bp):
TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG
Found at i:63933525 original size:137 final size:133
Alignment explanation
Indices: 63933359--63933696 Score: 484
Period size: 137 Copynumber: 2.5 Consensus size: 133
63933349 TACATATATG
* * *
63933359 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
63933424 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGATAAAT
65 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGG-CGATGTGATAAAT
63933489 GTGTATA
129 GTG-A-A
*
63933496 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* * * *
63933561 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCGATGTGGTGAATG
65 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCGATGTGATAAATG
63933626 TGAA
130 TGAA
* * *
63933630 AGTG-TATG--TATATGTGACCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
1 TGTGATAGGCCTA-ATG-G-CCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA
63933692 ATGGC
63 ATGGC
63933697 TAATGTAAAA
Statistics
Matches: 185, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
130 2 0.01
131 3 0.02
132 3 0.02
133 49 0.26
134 4 0.02
135 1 0.01
136 14 0.08
137 109 0.59
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30
Consensus pattern (133 bp):
TGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCGATGTGATAAATGT
GAA
Found at i:63933551 original size:88 final size:95
Alignment explanation
Indices: 63933359--63933646 Score: 396
Period size: 88 Copynumber: 3.1 Consensus size: 95
63933349 TACATATATG
* * * *
63933359 TGTGATAAGGCCGAATGGCC-AATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAA
1 TGTGATGAGGCCTAATGGCCGAGTG-G-TGAA-GTGAAAGTG-ATGTATATGTGATGAGGCCTAA
*
63933423 TGGCCGATGTGATGAATGTGAAAGTGGATGTATA
62 TGGCCGATGTGATGAATGTGAAAGTGTATGTATA
63933457 TGTGATGAGGCCTAATGGCCGA-T-GTG-A-T-AAA-TG-TGTATATGTGATGAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGCCGAGTGGTGAAGTGAAAGTGATGTATATGTGATGAGGCCTAATGGC
63933515 CGATGTGATGAATGTGAAAGTGTATGTATA
66 CGATGTGATGAATGTGAAAGTGTATGTATA
63933545 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGA-GTGGTGAA-GTGAAAGTG-ATGTATATGTGATGAGGCCTAAT
*
63933610 GG-CGATGTGGTGAATGTGAAAGTGTATGTATA
63 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
63933642 TGTGA
1 TGTGA
63933647 CCGATGTGGT
Statistics
Matches: 174, Mismatches: 5, Indels: 23
0.86 0.02 0.11
Matches are distributed among these distances:
88 75 0.43
90 3 0.02
91 6 0.03
92 2 0.01
94 2 0.01
95 5 0.03
96 3 0.02
97 34 0.20
98 43 0.25
99 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.30
Consensus pattern (95 bp):
TGTGATGAGGCCTAATGGCCGAGTGGTGAAGTGAAAGTGATGTATATGTGATGAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:63933646 original size:18 final size:18
Alignment explanation
Indices: 63933623--63933682 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
63933613 GATGTGGTGA
63933623 ATGTGAAAGTGTATGTAT
1 ATGTGAAAGTGTATGTAT
** *
63933641 ATGTGACCGATGT-GGTGA-
1 ATGTGAAAG-TGTATGT-AT
63933659 ATGTGAAAGTGTATGTAT
1 ATGTGAAAGTGTATGTAT
63933677 ATGTGA
1 ATGTGA
63933683 TAAGGCCTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 4 0.12
18 24 0.75
19 4 0.12
ACGTcount: A:0.30, C:0.03, G:0.32, T:0.35
Consensus pattern (18 bp):
ATGTGAAAGTGTATGTAT
Found at i:63933652 original size:36 final size:36
Alignment explanation
Indices: 63933612--63933682 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
63933602 GGCCTAATGG
63933612 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAC
1 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAC
63933648 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGA
1 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGA
63933683 TAAGGCCTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.04, G:0.34, T:0.34
Consensus pattern (36 bp):
CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAC
Found at i:63933853 original size:37 final size:37
Alignment explanation
Indices: 63933798--63933882 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
63933788 GGAATATGTT
*
63933798 CCGGGTGAGACCCAATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCAATGACTACGTGTGGAGATTATGA
* *
63933835 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCAATGACTACGTGTGGAGATTATGA
63933872 CCGGGTAAGAC
1 CCGGGTAAGAC
63933883 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCAATGACTACGTGTGGAGATTATGA
Found at i:63935638 original size:28 final size:28
Alignment explanation
Indices: 63935569--63935669 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63935559 GACAAGATTG
* * * *
63935569 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63935599 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63935627 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63935656 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63935670 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63939106 original size:28 final size:28
Alignment explanation
Indices: 63939037--63939137 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63939027 GACAAGATTG
* * * *
63939037 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63939067 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63939095 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63939124 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63939138 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63947039 original size:28 final size:28
Alignment explanation
Indices: 63946970--63947070 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63946960 GACAAGATTG
* * * *
63946970 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63947000 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63947028 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63947057 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63947071 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63954640 original size:28 final size:28
Alignment explanation
Indices: 63954571--63954671 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63954561 GACAAGATTG
* * * *
63954571 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
63954601 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
63954629 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
63954658 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63954672 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:63957311 original size:42 final size:42
Alignment explanation
Indices: 63957234--63957321 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
63957224 GTTAGTGAGA
*** *
63957234 TACATAGCCTAGCACATGGGCGTGTGGGGAAACTCAGAGAGT
1 TACATAGCCTAGCACATGGGCGTGTGACCAAACTCAAAGAGT
* **
63957276 TACATGGCCTAGCACATGGGCGTGTGACCCTACTCAAAGAGT
1 TACATAGCCTAGCACATGGGCGTGTGACCAAACTCAAAGAGT
63957318 TACA
1 TACA
63957322 CGGGTGAGGA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.20
Consensus pattern (42 bp):
TACATAGCCTAGCACATGGGCGTGTGACCAAACTCAAAGAGT
Found at i:63957688 original size:38 final size:38
Alignment explanation
Indices: 63957637--63957712 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
63957627 ATGTGTGAGT
63957637 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA
1 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA
63957675 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA
1 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA
63957713 CTTTAGAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (38 bp):
AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA
Found at i:63962068 original size:37 final size:37
Alignment explanation
Indices: 63962021--63962113 Score: 168
Period size: 37 Copynumber: 2.5 Consensus size: 37
63962011 GTCCCCACGT
*
63962021 GTAGTTATCGGGTCTTACCCGGACAAAATCTCCACAC
1 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
*
63962058 GTAGTCATCGGGTCTTACCCGGACATAATCTCCACAC
1 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
63962095 GTAGTCATCGGGTCTTACC
1 GTAGTCATCGGGTCTTACC
63962114 GGAATATATT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (37 bp):
GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
Found at i:63962315 original size:48 final size:48
Alignment explanation
Indices: 63962257--63962923 Score: 1136
Period size: 48 Copynumber: 13.9 Consensus size: 48
63962247 ATATACACAC
*
63962257 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
63962305 ATCTCATACATATTTCGCACTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATACAT
*
63962355 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63962403 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63962451 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63962499 ATCTCATACATATTTTACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63962547 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
63962595 ATCTCATACATATTTCACAGTAGCCATTCGCCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
63962643 ATCTCATTCATATTTTACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63962691 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63962739 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
63962787 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATGTACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63962835 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
63962883 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
63962924 CACATATATA
Statistics
Matches: 590, Mismatches: 27, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 545 0.92
50 45 0.08
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:63966594 original size:40 final size:40
Alignment explanation
Indices: 63966535--63966742 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
63966525 CAATTGAATG
* * * * *
63966535 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * * *
63966575 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
63966615 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
63966655 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
63966695 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
63966735 ATATCCGG
1 ATATCCGG
63966743 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:63977899 original size:27 final size:27
Alignment explanation
Indices: 63977842--63977899 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
63977832 TCTGTCAATT
** *
63977842 TACCTTACCGGGGTATTGTAGTCATTT
1 TACCTTACAAGGGTATTGTAGTCATTC
* * *
63977869 TACCTTACAAGGGTATTTTGGTTATTC
1 TACCTTACAAGGGTATTGTAGTCATTC
63977896 TACC
1 TACC
63977900 CTATGGGGGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (27 bp):
TACCTTACAAGGGTATTGTAGTCATTC
Found at i:63977954 original size:27 final size:27
Alignment explanation
Indices: 63977917--63978049 Score: 203
Period size: 27 Copynumber: 4.9 Consensus size: 27
63977907 GGTATTTAGG
* *
63977917 TCATTTGATCACATAAGAGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
*
63977944 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCA
63977971 TCATTTTATCACATAAGGGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
*
63977998 TCATTTTATCACATAAGGGTAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
* * *
63978025 TTATTTTATTACATAAGGGTAAAAT
1 TCATTTTATCACATAAGGGCAAAAT
63978050 TGTAACGCCC
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCA
Found at i:63979622 original size:28 final size:28
Alignment explanation
Indices: 63979589--63979709 Score: 134
Period size: 28 Copynumber: 4.3 Consensus size: 28
63979579 ATCGCATGAC
* *
63979589 TATGAATCTGATTGGGCCTAACGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
63979617 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* * *
63979645 TATAAATGTAATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* * *
63979673 TATGAATGAGGTTGGGCCTAAAGAGGCCA
1 TATGAATGTGATTGGGCCTAATG-GGCCA
*
63979702 AATGAATG
1 TATGAATG
63979710 AGTATGGATC
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 66 0.85
29 12 0.15
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:63982586 original size:23 final size:24
Alignment explanation
Indices: 63982559--63982615 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 24
63982549 GCTGATGGAC
*
63982559 AGTAAGCTCT-ATTAAGTTGA-AAT
1 AGTAAGCTCTGA-TAAGCTGAGAAT
*
63982582 TGTAAGCTCTGATAAGCTGAGAAT
1 AGTAAGCTCTGATAAGCTGAGAAT
63982606 AGTAAGCTCT
1 AGTAAGCTCT
63982616 TACGAGCTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.55
24 13 0.45
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (24 bp):
AGTAAGCTCTGATAAGCTGAGAAT
Found at i:63986835 original size:28 final size:29
Alignment explanation
Indices: 63986768--63986868 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
63986758 ATAGTGAATC
*
63986768 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
63986797 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * *
63986825 CGCACACTTAGTGCTGTATAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
63986855 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63986869 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.37
29 20 0.31
30 19 0.29
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:63994662 original size:28 final size:29
Alignment explanation
Indices: 63994595--63994695 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
63994585 ATAGTGAATC
*
63994595 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
63994624 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
63994652 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
63994682 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63994696 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:64003005 original size:29 final size:29
Alignment explanation
Indices: 64002942--64003040 Score: 96
Period size: 29 Copynumber: 3.4 Consensus size: 29
64002932 TCATCGACAA
*
64002942 ATGAAAAGGGATAGC-TTCAGCTATCCAA-T
1 ATGAAAAGGGATAGCTTTGA-CTAT-CAATT
* *
64002971 ACGAAAAGGGATAGCTTTGACTATCGATT
1 ATGAAAAGGGATAGCTTTGACTATCAATT
* *
64003000 ATGAAAAGGGAT-GGTAATGACTATCAAATT
1 ATGAAAAGGGATAGCT-TTGACTATC-AATT
64003030 ATGAAAAGGGA
1 ATGAAAAGGGA
64003041 CGTGCCAACC
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
28 4 0.07
29 38 0.64
30 17 0.29
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTTGACTATCAATT
Found at i:64010657 original size:687 final size:691
Alignment explanation
Indices: 64008087--64011942 Score: 3776
Period size: 690 Copynumber: 5.5 Consensus size: 691
64008077 ACATTGCAGG
* * * ** * *
64008087 TAGTTAGTGTTTCCGGTGTGGACGGTGCAAAATTCCAATGGAGTGATCCAATTTAGGCTTAGTGT
1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATT-C-A-GAAGTGATCCAAGTTAGGCTTAGTGT
* * * *
64008152 TTGAGTAGGTGATGTTATTGCTATTATTTTTGAACTATGGGAATAAGACAATGTGGTAGAATTGT
63 TCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGT
* * * *
64008217 TGGTTGATTATT-ATCATGATGTTTTAAATGATTATTTTGATTTTAATATTTTTAGGTTCGTGAA
128 TGGTTGATTATTAAT-ATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGA
* * ** * * * *
64008281 CGTTGTTATTTGTTTCTTGGTTTGCTCAGTTGAAATTATTGATAATGCTATGGACTGCAAATATG
192 CGTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTAAATATG
* * * *
64008346 GACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTG
257 AACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTG
* * ** * *
64008411 GAATGCCATGTTTTATTGGAATTTTTGCAGAATTATACGTAGGTATCGATAATCAGGGTATAGGT
322 GAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATAC--A---A--G------A-GG--TA--T
* ** * * * *
64008476 ATCGATACTTATGAGTTGAAACAAATGTGTAGGAAACAGTAGTTCATTTTCGTATCGATACCAGT
369 -T-GATACTTCTGAGTTGAAATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAAT
* * * *
64008541 TCTCGAGAATCGATACTCGGGGTAAAAATATAGATTCTTTTAAATTGTATCAATAAATTGCTGAG
432 TCTCGAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGG
* * * * ** * *** *
64008606 TTTTGGATTTTGAACAAAGA--AGAATTTTAAAAAGGCACCAATTTTTCAAATAATATCGATACC
497 TTTTGGATTTTGAAGAAA-ATCATAATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCC
* * * * *
64008669 AATTTTG-GAATATATCA-ATACCCATTTCGATGTTCTTATTT-AATGTATGATATCATGTTTAT
561 CATTTTGAGAA-ATAT-AGATTCCCATTTAGATGTTCTCATTTCAATATATGATATCA-GTTTAT
* * * * * * *
64008731 CGG-TAGCTTTTTCCTGATAATTCACTGAGCTTTTTTAACCTCACACACTCTTTTCTACACCTTT
623 TGGTTAGTTTTTTCCCGATCATTCACTGAG-ATTTTTAACCTCACACACTTTTTTCTAAACCTTT
* *
64008795 CCAAA
687 ACAGA
* * * **
64008800 TAGTGAGTG-TTTCCTGTGTGGGCGGTGCGGAATTCAAAGGAAGTAAAACAAGTTAGGCTTAGTG
1 TAGTTAGTGTTTTCGT-TGTGGGCGGTGCGGAATTC--A-GAAGTGATCCAAGTTAGGCTTAGTG
* * * * * * * *
64008864 TTCAAGTAAGTGAT-TTAGTGCTACTATTTTTAAATTGTGGGACA-AAGACAATGTCGTAGAATT
62 TTCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGA-ATAAGACAATATGGTAGAATT
* * * * * *
64008927 GTTGGTTTATT-TTTATCAAGATGTTTTCAATGATTATTTTGATTTTAATACTCTTATGTTCATG
126 GTTGGTTGATTATTAAT-ATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTG
* *
64008991 GACGTTGTTATTAGTTTATTGGTTTTTG-TTGGATGAAATTATTGATATTACTATAGACT-TCTA
190 GACGTTGTTATTAGTTTATTGG--TTTGCTTGGATGAAATTATTGATATTACTATGGACTGT-AA
* * * * *
64009054 ATATCAACATTTTGATGTTTAATATTGAAGTTATGGATGCATGTCGACGGGGTATGTGATTGAGT
252 ATATGAACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGT
* * * *
64009119 ATGTGGAATGCCCTGTTTTGTTGGAATTTTTGAAGAATTA-CCAAGAGGTATCGATAATCATGAC
317 ATGTGGAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGA-G----G-T-AT--TG--
* * * * * *
64009183 ATATGTATCAATACTACTCAGTTGAAATGAATGTGTAGAAAATAGTAGCACATTTTGGTACCGAT
371 --A--TA-C--T--T-CTGAGTTGAAATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGAT
* * * * * * * *
64009248 ACCAGTTATCGAGTATCAATACTCGGGGTAAAAATTTTGAAACTTTTGAATTGTAACGATAAATT
426 ACCAATTCTCGAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATT
** * * * **
64009313 ATTGGGTTTTGGATTTTAAATAAAATCATAATGTTAAAAGGGTA-TCGATTTTCCAAATAGTATC
491 GCTGGGTTTTGGATTTTGAAGAAAATCATAATGTTAAAAAGGTACT-GATTTTCCAAACGGTATC
** * *
64009377 GATTCCCATTTTGAGAAATATCTATTCCAATTTAAATG---T--TTTC-AT-T-T--TAT--GTT
555 GATTCCCATTTTGAGAAATATAGATTCCCATTTAGATGTTCTCATTTCAATATATGATATCAGTT
* * * ** * * * * *
64009430 CACT-GATAGTTTTTTCTGGATCATTCACTGAGATTTTTCAGCTCACTCACTCTTTTCTGAACCT
620 TATTGGTTAGTTTTTTCCCGATCATTCACTGAGATTTTTAACCTCACACACTTTTTTCTAAACCT
**
64009494 TTGTAGA
685 TTACAGA
* * * * * ***
64009501 TAGTTAGTGTTTTCATTGTGGACAGTGCGGAATTCAAAGGAATTGATCCATGTTAGGCTTAAAAT
1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTC--A-GAAGTGATCCAAGTTAGGCTTAGTGT
* * * * * * *
64009566 TCGATTAAGTGATATTATTACTATTATTTTTGAACTATAGAAATAAGGCAATATGGTAGAATTGT
63 TCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGT
**
64009631 TGGTTGATTATTACCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAC
128 TGGTTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAC
64009696 GTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACT-TATAATATG
193 GTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTA-AATATG
* * **
64009760 AACATTCTGATGTTTAATATTGAAGCTATGGATGCATGTTTAAGTGGTATGTGATTGAGTATGAA
257 AACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTG
* *
64009825 GAAAGCCCTATTTTGCTGGAATTATTGAAGAATTAT-CAA-AGGTATCGATACTTCTGAGTTGAA
322 GAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATACTTCTGAGTTGAA
* * * *
64009888 ATAAATGTACAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCTAGTATCAATACTCGG
387 ATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATCGATACTCGG
* *
64009953 GGTAAAAATATAGATGCTTTTGAGTTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAAT
452 GGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAAT
* * ** *
64010018 TATAGTGTTAAAAACATACTGATTTTCCAAACGGTATCGATTCCCATTATGAGAAATATAGATTC
517 CATAATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCCCATTTTGAGAAATATAGATTC
*
64010083 CCATTTAGATGTTCTCATTTCAATATATGATATCAAGTTTATTGGTTATTTTTTTCCCGATCATT
582 CCATTTAGATGTTCTCATTTCAATATATGATATC-AGTTTATTGGTTAGTTTTTTCCCGATCATT
* *
64010148 CACTGAGATTTTTAACCTCACACATTTTTTTCTAAACCTTTACAAA
646 CACTGAGATTTTTAACCTCACACACTTTTTTCTAAACCTTTACAGA
*
64010194 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGAAATTC-G-A-TGATCCAAGTTAGGCTTAGTGTTCG
1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTCAGAAGTGATCCAAGTTAGGCTTAGTGTTCG
* *
64010256 AGTAGGTGATACTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTATAATTGTTGG
66 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGTTGG
* *
64010321 TTGATTATTAATACGATGTTTTAAATGATTATTTTGA-TTTAATACTCTTAGGTTCCTAGACGTT
131 TTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGACGTT
64010385 GTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACT-TATAATATGAAC
196 GTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTA-AATATGAAC
*
64010449 ATTTTAATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAA
260 ATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAA
64010514 AGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAA-AGGTATTGATACTTCTGAGTTGAAATG
325 AGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATACTTCTGAGTTGAAATG
* *
64010578 AATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATTGATACTCGAGGT
390 AATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATCGATACTCGGGGT
* *
64010643 AAAAATATAGATGCTTTTGAGTTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAATCAT
455 AAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAATCAT
* *
64010708 AGTGTTAAAAACGTA-TCGATTTTCCTAAA-GGTATCGATTCCCATTTTGAGAAATATAGATTCC
520 AATGTTAAAAAGGTACT-GATTTTCC-AAACGGTATCGATTCCCATTTTGAGAAATATAGATTCC
* * *
64010771 CATTTAAATGTTCTCATTTTAATATATGATATCAAGTTTATTGGTTA-TTTTTTCCCAATCATTC
583 CATTTAGATGTTCTCATTTCAATATATGATATC-AGTTTATTGGTTAGTTTTTTCCCGATCATTC
64010835 ACTGAGATTTTT-ACCTCACACA-TTTTTTCTAAACCTTTACAGA
647 ACTGAGATTTTTAACCTCACACACTTTTTTCTAAACCTTTACAGA
* * * *
64010878 TAGTTAGTGTTTCCGTTGTGGGTGGTGCGAAATTCAATGGAATTGATCCAAGTTAGGCTTAGTGT
1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTC-A--GAAGTGATCCAAGTTAGGCTTAGTGT
* *
64010943 TCGAGTAGGTGATATTATTGTTATTATTTTTGAACTGTGGGAATAAGACAATATGGTATAATTGT
63 TCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGT
*
64011008 TGGTTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAT
128 TGGTTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAC
* * * * *
64011073 GTTGTTATTAGTTTATTGGTTTGCATGGGA-AAAATTATTTATATTTCTATGGACTGCAAATATG
193 GTTGTTATTAGTTTATTGGTTTGC-TTGGATGAAATTATTGATATTACTATGGACTGTAAATATG
* * * * *
64011137 GACATTTTGATGTTTAATATTGAAGCTATTGATGCTTGTTGAAGTGGTATGCGATTGAGTATTTG
257 AACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTG
* * * * *
64011202 GAAAGCCATGTTTTGCTAGAATTTACAGTGTTATACAGAGGTATCGATAATCACAGCATATGTAT
322 GAAAGCCCTGTTTTGCTGGAA-TT--A---TT-GA-AGA---AT---T-AT-ACA--AGAGGTAT
* * * ** ** * *
64011267 CGATACATT-TAAGTTGAAACGAATGTGCAAAAAACAAAAGCTCATTTTGGTATCGATATCACTT
369 TGATAC-TTCTGAGTTGAAATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATT
* * ** *
64011331 CTCGAGTATCGATACTCGGGGTAAAAATAAAGATACTTTTGCATTGTATTGATAAATTGTTGGGT
433 CTCGAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGT
* * * * * *
64011396 TTTGGATTTTGAAGAAAAGCGTAATGTTAAAAAGGTACCGATTTTTCAAACGGTATTGATACCCA
498 TTTGGATTTTGAAGAAAATCATAATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCCCA
* * * *
64011461 -ATT-AG----AT-G--TCCTCATTTAG-TG----GA---C--GATATCATATC----TATT-GT
563 TTTTGAGAAATATAGATTCC-CATTTAGATGTTCTCATTTCAATATATGATATCAGTTTATTGGT
* * * * *
64011502 TAGTTTTTTCCCAATCATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTT-TGAACCTTTGA-
627 TAGTTTTTTCCCGATCATTCACTGAGATT-TTTAACCTCACACACT-TTTTTCTAAACCTTT-AC
64011565 AGA
689 AGA
* * * * * *
64011568 TAGTTAGTGTTTCTAG-TATAGGTGGTGCGGAATTCCAAAGAAGTGATCTAAGTTGGGCTTAGTG
1 TAGTTAGTGTTT-TCGTTGTGGGCGGTGCGGAATT-C--AGAAGTGATCCAAGTTAGGCTTAGTG
** * *
64011632 TTTAAGTAGGTGATATTA-TGTCTATTATTTTTGAACTGTGTGAATAAGACAATGTGGTAGAATT
62 TTCGAGTAGGTGATATTATTG-CTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATT
* * * * * *
64011696 GTTGGTTGATTATT-ATCTTCATGATTTAAATAATTATATTT-ATTTTAATACTCTAAGGTTCGT
126 GTTGGTTGATTATTAAT-ATGATGTTTTAAATGATTAT-TTTGATTTTAATACTCTTAGGTTCCT
* * * * * * *
64011759 GGACGTTGTTATCAGTTTATTGGTTTGCTTGGTTGCAATTAGTGATATTGCTATGGACTGGAATT
189 GGACGTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTAAAT
** * * * * *
64011824 ATGGGCATTTTGATGTTGAATATTGATGTTATGGATGCATGTTGAAATGGTATGTGTTTGAGTAT
254 ATGAACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTAT
* * ** * * *
64011889 GTGGAATGCCCTGTTTTTCCAGAATTTTTGCAGAATTATA-AAGAAGTATTGATA
319 GTGGAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATA
64011943 ATCACGGCAT
Statistics
Matches: 2686, Mismatches: 355, Indels: 246
0.82 0.11 0.07
Matches are distributed among these distances:
671 10 0.00
673 1 0.00
674 1 0.00
675 2 0.00
676 1 0.00
679 182 0.07
680 2 0.00
682 5 0.00
684 60 0.02
685 14 0.01
686 216 0.08
687 393 0.15
688 8 0.00
689 23 0.01
690 415 0.15
691 164 0.06
692 23 0.01
693 87 0.03
694 2 0.00
695 1 0.00
697 3 0.00
698 1 0.00
699 7 0.00
700 5 0.00
701 224 0.08
702 154 0.06
703 5 0.00
704 2 0.00
705 6 0.00
706 2 0.00
707 7 0.00
708 4 0.00
709 11 0.00
710 167 0.06
711 5 0.00
712 121 0.05
713 291 0.11
714 58 0.02
715 3 0.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (691 bp):
TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTCAGAAGTGATCCAAGTTAGGCTTAGTGTTCG
AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGTTGG
TTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGACGTT
GTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTAAATATGAACA
TTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAAA
GCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATACTTCTGAGTTGAAATGA
ATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATCGATACTCGGGGTA
AAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAATCATA
ATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCCCATTTTGAGAAATATAGATTCCCAT
TTAGATGTTCTCATTTCAATATATGATATCAGTTTATTGGTTAGTTTTTTCCCGATCATTCACTG
AGATTTTTAACCTCACACACTTTTTTCTAAACCTTTACAGA
Found at i:64014146 original size:712 final size:711
Alignment explanation
Indices: 64012027--64014532 Score: 2913
Period size: 708 Copynumber: 3.5 Consensus size: 711
64012017 GTAGTTCTTG
* * *
64012027 AGTATGTGATATTAGTGCTATTATTTTTGAATTGTGGGAATAAGACAATGTGGTAGAATTGTTGG
1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG
* * * * * *
64012092 CTGATTATCATTATGACGTTTTAAATTATTATTTTGATTTTAATACTCTTAGGTTTC-TGGACGA
66 TTGATTATTATCATGATGTTTTAAATGATTATTTT-ATTTTAATACTCTTAGG-TTCGTGGACGT
* *
64012156 TATTATTAGTTTATTGGTTTGCTTGGTAGAAATTATTTATATTGTTATGGACTGCAAATATGGGC
129 TATTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGAC
* * * * *
64012221 ATTTTGTTGTTTACTATTGAAGTTATGGATGCATGTTGAAGT-GTCTGTGATTGAGA-ATGTGCA
194 ATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGA-ATATGTGGA
* * * * *
64012284 ATGCCCTGTGTTGCTGGAATATTT-ATAGAATTTTATAGAGGTATCGATAA-CGACGGCATATGT
258 ATG-CCTATTTTGCTGGAATTTTTGA-AGAATTATACAGAGGTATCGATAATC-ACGGCATATGT
** * *
64012347 ATTGATACTTCTAAGTTGAAACGAATGC-GTAGGAGA-TAGTAGCTCATCTT-GTAATTGATAGC
320 ATCAATACTTCTAAGTTGAAACGAAT-CTGTAGGAGACTAGTAGCTCATTTTGGT-ATCGATA-C
* * * * * * * *
64012409 -AGTTCTCGAGTACCGATACTCGGGGTAAAAACATAGATA-ATTTAAATTGTATCAACAAAATCT
382 TAGTTCTCAAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAAATAT
* * * * * *
64012472 AGGGGTTTTGGATTTTT-AAAAAAAGC-GAAAAGTTAAAAAGGTACTGAGTTTTCAAAAGGTATC
447 -GGGGTTTTGG-TTTTTGAAGAAAATCAG-AATGTAAAAAAGGTTCCGA-TTTTCAAAAGGTATC
* * * * * *
64012535 GATACTCATTTTGAGAAATATCGATACCCAATTAGATGTTCTCATTTAATGGATTATATGATGTC
508 GATACTCATTTTGAGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTT
* * * * *
64012600 TATTATTAGTTTTTTCCCGCTCATTCACGGAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCT
573 TATTAGTAGTTTTTTCCTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCT
* ** * *
64012665 TTGTAGATAGTTAGTGTTTCTTGTGTAGGCGGTGGGAAATTCCAAGGAAGTGATCCAAATTAGGC
638 TTGCAGATAGTTAGTGTTTCAGGTGTAGGCGGTCGG-AATTCCAAGGAAGTGATCCAAGTTAGGC
*
64012730 TTAGTGTTTG
702 TTAGTGTTTC
* *
64012740 AGTAGGTGATATTATTGCTATTATATTTGAACTATGGGAATAAGACAATGTGGTAGAATTGTTGG
1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG
* *
64012805 TTGATTATTATCATGATATTTTAAATG---A-TTT-TTTTAGTACTCTTAGGTTCGTGGACGTTA
66 TTGATTATTATCATGATGTTTTAAATGATTATTTTATTTTAATACTCTTAGGTTCGTGGACGTTA
* ** *
64012865 TTATTAGTTTATTGGTTTGCTTGTTTG-AATT-TTTGGATATTACTATGGACTGCAACTATGGAC
131 TTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTT--ATATTGTTATGGACTGCAAATATGGAC
* * * * *
64012928 ATTTTGATGTTGAATACTGAAGTTATGGATGCATGTTGAAGTGGTATTTTATTGACTATGTGAAA
194 ATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAA
* * * *
64012993 TACTCTATTTTGCTTGAGTTTTTGTAGAATTATACAGAGGTATCGATAATCACGGCATATGTATC
259 TGC-CTATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGGCATATGTATC
* * * * * * * * * *
64013058 GATACTTCTGAA-ATGAAAAGAATGTATAAGA-AATAGTTGCTCATTTTGGTTTCGATTCTAGTT
323 AATACTTCT-AAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATACTAGTT
64013121 CTCAAGTATCGATACT-GGGGATAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGG
387 CTCAAGTATCGATACTCGGGG-TAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGG
* ** * * * *
64013185 CTTTGGACTTTGAAGTAAATCATAATGATAAAAAAGGTGT-CGATTTTGC-AACGGTATTGATAC
451 TTTTGGTTTTTGAAGAAAATCAGAATG-TAAAAAAGGT-TCCGATTTT-CAAAAGGTATCGATAC
* * * * * *
64013248 TCATTTTGAAAAATGTTGATTCTCATTTAGATGTTCTCATTTAATGTATGATATCATGTTCATTG
513 TCATTTTGAGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTA
*
64013313 GTAGTTTTTTCCTGATCA-TCTACTAAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTTGC
578 GTAGTTTTTTCCTGATCATTC-ACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTTGC
* * * * *
64013377 ACG-TACTTAGTGTTTCCGATGTTA-GCGGTGTGGAATTCCAAGGAAGTGATACAAGTTAGGCTT
642 A-GATAGTTAGTGTTTCAGGTG-TAGGCGGT-CGGAATTCCAAGGAAGTGATCCAAGTTAGGCTT
*
64013440 AGTGTTTT
704 AGTGTTTC
*
64013448 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTTG
1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG
* * * * *
64013513 TTGATTATTATGATGATGTTTTAAATGATCATTTTGATTTTAATACACTTAGGTCCTTGGACGTT
66 TTGATTATTATCATGATGTTTTAAATGATTATTTT-ATTTTAATACTCTTAGGTTCGTGGACGTT
* ** ** * *
64013578 GTTATTAGTTTATTTCTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTAAAAATATAGATA
130 ATTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGACA
* *
64013643 TTTTGATGTTGAATATTGAAGCTATGGATGCATGTTGATGTGGTATGTGATTGAATATGTGGAAT
195 TTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAAT
64013708 GCCATATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGAG-ATATGTATC
260 GCC-TATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACG-GCATATGTATC
* * *
64013772 AATACTTCTAAGTTG-AACGAATCTGCAGGAGACT-GTAGCTCATTTTGGTAGCGATACTGGTTC
323 AATACTTCTAAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATACTAGTTC
* * * * *
64013835 TAAAGTATCGATACTCGGGGT-AAAATATAGATACTTTTGAATTGTATTGATAAATTGTTGGGTT
388 TCAAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGGTT
* *
64013899 TTGGTTTTTGAAGAAAATTAGAATGTAAAAAAGGTTCCGATTTTCCAAATGGTATCGATAC-CTA
453 TTGGTTTTTGAAGAAAATCAGAATGTAAAAAAGGTTCCGATTTT-CAAAAGGTATCGATACTC-A
* * *
64013963 TTTTTAGAAATATC-AGTTCCCATTTCGATGTTCTCATTTAATGTATGATACCATGTTTATTAGT
516 TTTTGAGAAATATCGA-TTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTAGT
*
64014027 AGTTTTTTCTTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAA-CTTTCGCAG
580 AGTTTTTTCCTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTT-GCAG
* * * *
64014091 ATAGTTAGTGTTTAAGGTGTGGGCTGTACAGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG
644 ATAGTTAGTGTTTCAGGTGTAGGCGGT-CGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG
64014156 -TTC
708 TTTC
* * * *
64014159 A-T--GT-A-ATGATT-CTATTATTTTTAAATTGTGGCACA-AAGACAATGTGGTAGAATTGTTG
1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGA-ATAAGACAATGTGGTAGAATTGTTG
* * *
64014217 GTTCATTATTATCTTGATGTTTTAAATGATTATATTTATTTTAATACTCTTAGGTTCGTGGATGT
65 GTTGATTATTATCATGATGTTTTAAATGATTAT-TTTATTTTAATACTCTTAGGTTCGTGGACGT
* * * * *
64014282 TGTTATTAGTTTATTGGTTTGCTTGTTTTAAATTATTTATATTGATATGGACTTCAAATATGGAC
129 TATTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGAC
* ** *
64014347 ATTTTGATGTTGAATATTGAATTTATGGATGCATGTTGAAGTCATATGTGATTGAGTATGTGGAA
194 ATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAA
* * * *
64014412 TGCCTTATTTTTCTGGAATTTTAGAAGAATTTTACAGAGGTATCGATAATCACGGCATATGTATT
259 TGCC-TATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGGCATATGTATC
* * * * * *
64014477 AGTACTTTTGAGTTGAAACAAATGTGTAGGAGAC-AGTAGCTCATATT-GTATCGATA
323 AATACTTCTAAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATA
64014533 ACAATATGAT
Statistics
Matches: 1526, Mismatches: 217, Indels: 108
0.82 0.12 0.06
Matches are distributed among these distances:
704 1 0.00
705 290 0.19
706 42 0.03
707 122 0.08
708 420 0.28
709 44 0.03
710 3 0.00
711 30 0.02
712 232 0.15
713 135 0.09
714 199 0.13
715 5 0.00
716 3 0.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (711 bp):
AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG
TTGATTATTATCATGATGTTTTAAATGATTATTTTATTTTAATACTCTTAGGTTCGTGGACGTTA
TTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGACAT
TTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAATG
CCTATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGGCATATGTATCAAT
ACTTCTAAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATACTAGTTCTCA
AGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGGTTTTG
GTTTTTGAAGAAAATCAGAATGTAAAAAAGGTTCCGATTTTCAAAAGGTATCGATACTCATTTTG
AGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTAGTAGTTTT
TTCCTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTTGCAGATAGTTA
GTGTTTCAGGTGTAGGCGGTCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTC
Found at i:64015305 original size:34 final size:34
Alignment explanation
Indices: 64015267--64015407 Score: 192
Period size: 34 Copynumber: 4.1 Consensus size: 34
64015257 AGTGACAGTC
* *
64015267 CAGTATCAATGTGGGCCTTAGCTCATTACAGTAT
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT
** *
64015301 CAGTATCAGTGTGGGCCTTAAACCATTACACTAT
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT
* *
64015335 CAGTATTAGTATGGGCCTTAGCCCATTACAGTAT
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT
* * *
64015369 CAGTATCAGGGTCGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT
64015403 CAGTA
1 CAGTA
64015408 ACAAAAGTGC
Statistics
Matches: 92, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 92 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT
Found at i:64019941 original size:19 final size:19
Alignment explanation
Indices: 64019917--64019953 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
64019907 GGATGAACAC
64019917 TTTTCTTCCTTTCTTTTTT
1 TTTTCTTCCTTTCTTTTTT
* *
64019936 TTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTCTTTTT
64019954 GTTTCTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (19 bp):
TTTTCTTCCTTTCTTTTTT
Found at i:64021198 original size:42 final size:41
Alignment explanation
Indices: 64021141--64021253 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 41
64021131 GAATACTCAT
* * * *
64021141 TCTCACACACAAAGTGCCAATACATAGTCGACGCTAAT-TCAA
1 TCTCGCACACTAAGTGCC-ATACATAGTCGAAGCT-ATCCCAA
*
64021183 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCCCAA
1 TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCCCAA
*
64021224 -ATCGCACACTAAGTGCCATACATAGTCGAA
1 TCTCGCACACTAAGTGCCATACATAGTCGAA
64021254 TTGTTGTTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
40 30 0.48
41 17 0.27
42 16 0.25
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.20
Consensus pattern (41 bp):
TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCCCAA
Found at i:64021530 original size:19 final size:19
Alignment explanation
Indices: 64021506--64021545 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
64021496 ACATTAGGGA
64021506 TATTTTACACATTTGCCCC
1 TATTTTACACATTTGCCCC
64021525 TATTTTACACATTTGCCCC
1 TATTTTACACATTTGCCCC
64021544 TA
1 TA
64021546 AACTTTCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42
Consensus pattern (19 bp):
TATTTTACACATTTGCCCC
Found at i:64021557 original size:20 final size:19
Alignment explanation
Indices: 64021509--64021558 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
64021499 TTAGGGATAT
*
64021509 TTTACACATTTGCCCCTAT
1 TTTACACATTTGCCCCTAC
64021528 TTTACACATTTGCCCCTAAAC
1 TTTACACATTTGCCCCT--AC
64021549 TTT-CACATTT
1 TTTACACATTT
64021559 TTTACAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 17 0.61
20 7 0.25
21 4 0.14
ACGTcount: A:0.24, C:0.30, G:0.04, T:0.42
Consensus pattern (19 bp):
TTTACACATTTGCCCCTAC
Found at i:64023113 original size:19 final size:19
Alignment explanation
Indices: 64023089--64023130 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
64023079 CATCTGTTTA
*
64023089 AACAGTACTTCATCCATAT
1 AACAGTAATTCATCCATAT
*
64023108 AACAGTAATTCATCCGTAT
1 AACAGTAATTCATCCATAT
64023127 AACA
1 AACA
64023131 CAGCTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (19 bp):
AACAGTAATTCATCCATAT
Found at i:64028644 original size:27 final size:27
Alignment explanation
Indices: 64028606--64028659 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
64028596 AGTGACGGAG
*
64028606 TATGAGCAAAAATTCATGAGATTCAGC
1 TATGAGCAAAAATTCATGAGACTCAGC
64028633 TATGAGCAAAAATTCATGAGACTCAGC
1 TATGAGCAAAAATTCATGAGACTCAGC
64028660 CAGTATGCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (27 bp):
TATGAGCAAAAATTCATGAGACTCAGC
Found at i:64032719 original size:15 final size:15
Alignment explanation
Indices: 64032699--64032749 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
64032689 ATTTAAAATA
64032699 AGTAATACCTATCTT
1 AGTAATACCTATCTT
*
64032714 AGTAATACATAT-TAAT
1 AGTAATACCTATCT--T
64032730 AAGTAATACCTATCTT
1 -AGTAATACCTATCTT
64032746 AGTA
1 AGTA
64032750 GTACATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 1 0.03
15 15 0.50
16 2 0.07
17 11 0.37
18 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (15 bp):
AGTAATACCTATCTT
Found at i:64032731 original size:32 final size:32
Alignment explanation
Indices: 64032695--64032760 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
64032685 CAACATTTAA
64032695 AATAAGTAATACCTATCTTAGTAATACATATT
1 AATAAGTAATACCTATCTTAGTAATACATATT
*
64032727 AATAAGTAATACCTATCTTAGTAGTACATATT
1 AATAAGTAATACCTATCTTAGTAATACATATT
64032759 AA
1 AA
64032761 AACCATCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (32 bp):
AATAAGTAATACCTATCTTAGTAATACATATT
Found at i:64033259 original size:27 final size:27
Alignment explanation
Indices: 64033229--64033369 Score: 191
Period size: 27 Copynumber: 5.2 Consensus size: 27
64033219 GTGACGAAGT
64033229 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
64033256 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
64033283 CACCAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
64033310 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
64033337 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
64033364 CACCAG
1 CACCAG
64033370 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 10 0.10
27 88 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:64033311 original size:54 final size:54
Alignment explanation
Indices: 64033229--64033369 Score: 248
Period size: 54 Copynumber: 2.6 Consensus size: 54
64033219 GTGACGAAGT
*
64033229 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
64033283 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
64033337 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
64033370 GACGCTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:64035022 original size:26 final size:26
Alignment explanation
Indices: 64034991--64035072 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
64034981 TGAAATGCCC
64034991 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
64035017 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
64035043 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
64035069 ATCA
1 ATCA
64035073 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:64036852 original size:13 final size:13
Alignment explanation
Indices: 64036834--64036866 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
64036824 GTTTGTTTAT
64036834 TAAACTAATTAAC
1 TAAACTAATTAAC
*
64036847 TAAACTAATTGAC
1 TAAACTAATTAAC
64036860 T-AACTAA
1 TAAACTAA
64036867 ACTAAAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.52, C:0.15, G:0.03, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:64043485 original size:38 final size:39
Alignment explanation
Indices: 64043396--64043512 Score: 173
Period size: 38 Copynumber: 3.0 Consensus size: 39
64043386 TGAAAACAAG
* *
64043396 TATTAAAGATGTTCAAACTATGACATAATTTAAAGACCCA
1 TATTAATGATGTTCAAACTATGACATAA-TTAAAGACTCA
* *
64043436 TATTAATGATGTTCAGATTATGACATAATTAAA-ACTCA
1 TATTAATGATGTTCAAACTATGACATAATTAAAGACTCA
*
64043474 TATTAATGATGTTCAAACTAAGACATAATTAAAGACTCA
1 TATTAATGATGTTCAAACTATGACATAATTAAAGACTCA
64043513 AACTAAAAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
38 34 0.49
39 10 0.14
40 25 0.36
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.32
Consensus pattern (39 bp):
TATTAATGATGTTCAAACTATGACATAATTAAAGACTCA
Found at i:64049294 original size:31 final size:31
Alignment explanation
Indices: 64049256--64049319 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
64049246 CCTTTTCATA
*
64049256 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
64049287 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
64049318 TT
1 TT
64049320 ACTGTAAGCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:64049604 original size:24 final size:24
Alignment explanation
Indices: 64049531--64049654 Score: 207
Period size: 23 Copynumber: 5.2 Consensus size: 24
64049521 GGCCTAGTCT
64049531 CTTTTAATAACTGGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCC
64049554 CTTTTAATAACTGGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCC
64049577 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
64049601 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
64049625 CTTTATCATAGCTGGGGCATAAGCC
1 CTTT-TAATAACTGGGGCATAAGCC
64049650 CTTTT
1 CTTTT
64049655 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
23 41 0.42
24 34 0.35
25 22 0.23
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:64049613 original size:47 final size:48
Alignment explanation
Indices: 64049531--64049654 Score: 207
Period size: 47 Copynumber: 2.6 Consensus size: 48
64049521 GGCCTAGTCT
64049531 CTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
64049577 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
* *
64049625 CTTTATCATAGCTGGGGCATAAGCCCTTTT
1 CTTT-TAATAACTGGGGCATAAGCCCTTTT
64049655 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
46 18 0.25
47 23 0.32
48 9 0.12
49 23 0.32
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
Found at i:64049726 original size:9 final size:9
Alignment explanation
Indices: 64049712--64049768 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
64049702 ACATCATGTG
64049712 CATATCATA
1 CATATCATA
*
64049721 CATATCATGTG
1 CATATCA--TA
64049732 CATATCATA
1 CATATCATA
* *
64049741 CATGTCATGTG
1 CATATCA--TA
64049752 CATATCATA
1 CATATCATA
64049761 CATATCAT
1 CATATCAT
64049769 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:64049729 original size:20 final size:20
Alignment explanation
Indices: 64049704--64049770 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
64049694 TTATGAATAC
64049704 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
64049724 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
64049744 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
64049764 ATCATGT
1 ATCATGT
64049771 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:64049735 original size:11 final size:11
Alignment explanation
Indices: 64049704--64049759 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
64049694 TTATGAATAC
64049704 ATCATGTGCAT
1 ATCATGTGCAT
*
64049715 ATCA--TACAT
1 ATCATGTGCAT
64049724 ATCATGTGCAT
1 ATCATGTGCAT
*
64049735 ATCA--TACAT
1 ATCATGTGCAT
*
64049744 GTCATGTGCAT
1 ATCATGTGCAT
64049755 ATCAT
1 ATCAT
64049760 ACATATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:64051435 original size:29 final size:29
Alignment explanation
Indices: 64051402--64051466 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
64051392 GTGACGAGAT
64051402 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64051431 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
64051460 CGGCACT
1 TGGCACT
64051467 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64059233 original size:29 final size:29
Alignment explanation
Indices: 64059200--64059264 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
64059190 GTGACGAGAT
64059200 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64059229 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
64059258 CGGCACT
1 TGGCACT
64059265 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64062850 original size:27 final size:27
Alignment explanation
Indices: 64062820--64062901 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
64062810 ATGCAAAAGC
*
64062820 ATATAGTGAGTCCGCACACTTAGTGCT
1 ATATAGTAAGTCCGCACACTTAGTGCT
*
64062847 ATAT-GATCAG-CTCGCACACTTAGTGCT
1 ATATAG-TAAGTC-CGCACACTTAGTGCT
* * *
64062874 ATATAATCAAATTCGCACACTTAGTGCT
1 ATATAGT-AAGTCCGCACACTTAGTGCT
64062902 GTACAAATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
26 2 0.04
27 27 0.60
28 16 0.36
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (27 bp):
ATATAGTAAGTCCGCACACTTAGTGCT
Found at i:64062898 original size:28 final size:27
Alignment explanation
Indices: 64062832--64062901 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
64062822 ATAGTGAGTC
* *
64062832 CGCACACTTAGTGCTATATGATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
64062859 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
64062887 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64062902 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:64067491 original size:17 final size:17
Alignment explanation
Indices: 64067455--64067493 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
64067445 CATCTTAAAT
*
64067455 TATTATAATCAAACATA
1 TATTATAATCAAACAAA
64067472 TATTA-AATCAAACCAAA
1 TATTATAATCAAA-CAAA
64067489 TATTA
1 TATTA
64067494 CAGGTTACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (17 bp):
TATTATAATCAAACAAA
Found at i:64069561 original size:24 final size:24
Alignment explanation
Indices: 64069529--64069576 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
64069519 AATAACATTT
64069529 ATATCATTGATTCAAGCATCTAAC
1 ATATCATTGATTCAAGCATCTAAC
64069553 ATATCATTGATTCAAGCATCTAAC
1 ATATCATTGATTCAAGCATCTAAC
64069577 TTACCATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (24 bp):
ATATCATTGATTCAAGCATCTAAC
Found at i:64069590 original size:24 final size:24
Alignment explanation
Indices: 64069533--64069587 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
64069523 ACATTTATAT
* *
64069533 CATTGATTCAAGCATCTAACATAT
1 CATTAATTCAAGCATCTAACATAC
* *
64069557 CATTGATTCAAGCATCTAACTTAC
1 CATTAATTCAAGCATCTAACATAC
64069581 CA-TAATT
1 CATTAATT
64069588 TCACAACTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (24 bp):
CATTAATTCAAGCATCTAACATAC
Found at i:64069824 original size:56 final size:56
Alignment explanation
Indices: 64069764--64069916 Score: 236
Period size: 56 Copynumber: 2.7 Consensus size: 56
64069754 TCCCAGACAG
*
64069764 GGTCTTACTCGCACACATATAT-GAGAGTCACATATCGATGCCAACGTACTAAACGT
1 GGTCTTACTCGCACACATATATCG-GAGTCACATATCGATGCCAACGTACTAAACAT
* * *
64069820 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
* *
64069876 GGTCTTACTCGTATACATATATCGGAGTCACATATCGATGC
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGC
64069917 TGTGGTCTTA
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
56 88 0.99
57 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
Found at i:64072518 original size:39 final size:39
Alignment explanation
Indices: 64072463--64072625 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
64072453 TGTGTATAAA
* *
64072463 TGTGCGAGTTGTGATATGCGGGTTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
64072502 TGTGCGAGTTGCGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
64072541 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
64072580 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
64072620 TGTGCG
1 TGTGCG
64072626 GGCTACCATA
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 100 0.85
40 17 0.15
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:64076413 original size:79 final size:77
Alignment explanation
Indices: 64076256--64076473 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 77
64076246 GAATCACGTA
* * * *
64076256 CCTTCGGAAT-TTAACCGGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGCCCGGTTATAG
1 CCTTCGG-ATCTTAACCGGATATAG-TACTCGTACAAATGCCTTC-GGGCTTAGCCCGGATATAG
* *
64076320 TAACTCGCATAAATG
63 TAAATCGCACAAATG
* *
64076335 CCTTTGGGA-CTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGCTTAGCCCGGCAT-TA
1 CC-TTCGGATCTTAA-CCGGATATAGT-ACTCGTACAAATGCCTTCGGGCTTAGCCCGG-ATATA
*
64076398 GTAAATTGCACAAATG
62 GTAAATCGCACAAATG
* * *
64076414 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTA-ACCGGATATAGT-AC-TCGTACAAATGCCTTCGGG-CTTAGCCCGGA
64076474 CATCATTCGA
Statistics
Matches: 115, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
78 5 0.04
79 62 0.54
80 48 0.42
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (77 bp):
CCTTCGGATCTTAACCGGATATAGTACTCGTACAAATGCCTTCGGGCTTAGCCCGGATATAGTAA
ATCGCACAAATG
Found at i:64076473 original size:40 final size:40
Alignment explanation
Indices: 64076270--64076473 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
64076260 CGGAATTTAA
** * *
64076270 CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
64076310 CCGGTTATAGTAACTCGCATAAATGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64076350 CCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
64076389 CCGGCAT-TAGTAAATTGCACAAATGCCTTC-GGATCTTAGT
1 CCGG-ATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
64076429 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
64076469 CCGGA
1 CCGGA
64076474 CATCATTCGA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 90 0.67
41 11 0.08
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64084584 original size:77 final size:82
Alignment explanation
Indices: 64084458--64084640 Score: 229
Period size: 77 Copynumber: 2.3 Consensus size: 82
64084448 GCTACTCGTT
* * *
64084458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
64084521 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
64084538 CAAATGCCTTC-GG-CTTAGCCCGGAAT-TAGTAA-TCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
64084599 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
64084616 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64084641 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
76 3 0.03
77 37 0.41
78 25 0.28
79 14 0.16
80 11 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:64084640 original size:40 final size:40
Alignment explanation
Indices: 64084458--64084640 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
64084448 GCTACTCGTT
* *
64084458 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
64084498 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
64084538 CAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
64084575 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
64084616 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64084641 CATCATTCGA
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
37 18 0.15
38 16 0.13
39 17 0.14
40 62 0.50
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:64085358 original size:2 final size:2
Alignment explanation
Indices: 64085351--64085378 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
64085341 TCACGTGCAA
64085351 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64085379 GCAAGAGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64091600 original size:28 final size:29
Alignment explanation
Indices: 64091571--64091711 Score: 87
Period size: 29 Copynumber: 5.0 Consensus size: 29
64091561 GCATGAACAT
64091571 AATGTGATTTGGGCTAGATGGGCCATATA
1 AATGTGATTTGGGCTAGATGGGCCATATA
* * * *
64091600 AATGAGA-TTGGGCTA-ACGGCCCATATG
1 AATGTGATTTGGGCTAGATGGGCCATATA
* * *
64091627 AATGTGAATTAGGCCT-GATGGGCCATATG
1 AATGTG-ATTTGGGCTAGATGGGCCATATA
* * * ** **
64091656 AACGTGAATTAGGCCGGAACGGCCATATA
1 AATGTGATTTGGGCTAGATGGGCCATATA
64091685 AATGCT-A-TTGGGCCTAG-TGGGCCATAT
1 AATG-TGATTTGGG-CTAGATGGGCCATAT
64091712 GCATGTATGT
Statistics
Matches: 82, Mismatches: 24, Indels: 13
0.69 0.20 0.11
Matches are distributed among these distances:
27 14 0.17
28 25 0.30
29 42 0.51
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
AATGTGATTTGGGCTAGATGGGCCATATA
Found at i:64091653 original size:29 final size:29
Alignment explanation
Indices: 64091620--64091717 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
64091610 GGCTAACGGC
64091620 CCATATGAATGTGAATTAGGCCTGATGGG
1 CCATATGAATGTGAATTAGGCCTGATGGG
* * **
64091649 CCATATGAACGTGAATTAGGCCGGAACGG
1 CCATATGAATGTGAATTAGGCCTGATGGG
* *
64091678 CCATATAAATGCT--ATTGGGCCT-AGTGGG
1 CCATATGAATG-TGAATTAGGCCTGA-TGGG
*
64091706 CCATATGCATGT
1 CCATATGAATGT
64091718 ATGTAGGGGT
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
27 2 0.04
28 18 0.33
29 34 0.62
30 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (29 bp):
CCATATGAATGTGAATTAGGCCTGATGGG
Found at i:64098742 original size:18 final size:19
Alignment explanation
Indices: 64098719--64098754 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
64098709 GCAATAAAAA
*
64098719 AGGAAAT-TTAAAAGAAAG
1 AGGAAATGTAAAAAGAAAG
64098737 AGGAAATGTAAAAAGAAA
1 AGGAAATGTAAAAAGAAA
64098755 AGAAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.22, T:0.14
Consensus pattern (19 bp):
AGGAAATGTAAAAAGAAAG
Found at i:64113283 original size:20 final size:20
Alignment explanation
Indices: 64113260--64113305 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
64113250 TTCGGCCGTT
64113260 ATGGGCCACAT-TGGGCCGAA
1 ATGGGCC-CATGTGGGCCGAA
**
64113280 ATGGGCCTTTGTGGGCCGAA
1 ATGGGCCCATGTGGGCCGAA
64113300 ATGGGC
1 ATGGGC
64113306 TTTTGGGCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.20, C:0.22, G:0.39, T:0.20
Consensus pattern (20 bp):
ATGGGCCCATGTGGGCCGAA
Found at i:64113310 original size:20 final size:20
Alignment explanation
Indices: 64113271--64113314 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
64113261 TGGGCCACAT
64113271 TGGGCCGAAATGGGCCTTTG
1 TGGGCCGAAATGGGCCTTTG
64113291 TGGGCCGAAATGGG-CTTT-
1 TGGGCCGAAATGGGCCTTTG
64113309 TGGGCC
1 TGGGCC
64113315 CCACACAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 6 0.25
19 4 0.17
20 14 0.58
ACGTcount: A:0.14, C:0.20, G:0.41, T:0.25
Consensus pattern (20 bp):
TGGGCCGAAATGGGCCTTTG
Found at i:64113575 original size:27 final size:27
Alignment explanation
Indices: 64113545--64113635 Score: 146
Period size: 27 Copynumber: 3.4 Consensus size: 27
64113535 CCCAAAAATA
*
64113545 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
64113572 GGTAAAATGACCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
64113599 GGTAAAATGACCATAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
64113626 GGTAAAATGA
1 GGTAAAATGA
64113636 TGATTATGAC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:64115565 original size:40 final size:40
Alignment explanation
Indices: 64115484--64115705 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
64115474 AAACCAAGTA
** * *
64115484 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
64115523 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
64115563 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
64115603 CCTTCAGGACTTGGCCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
64115643 CCTTCAGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
64115683 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
64115706 CAATCCGAAT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 13 0.08
40 154 0.92
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:64119470 original size:50 final size:48
Alignment explanation
Indices: 64119303--64119483 Score: 172
Period size: 50 Copynumber: 3.7 Consensus size: 48
64119293 TAGGGTATAA
* * * *
64119303 TGCCTATGCCATGTCCCAAATATGGTCTTACACTGGCTTAACCATCA-CG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTCA-CAT-ATCG
* ** * *
64119352 T--CGATGCCATGTCCTAGGCATGGTCTTACACTAACTATCA-AAATCG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-TCACATATCG
* * *
64119398 AGGCTGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATTCG
1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-TCACATA-TCG
64119449 TGCCGATGCCATGTCCCAAACATGGTCTTACACTA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTA
64119484 ACATATCTCG
Statistics
Matches: 104, Mismatches: 21, Indels: 13
0.75 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 3 0.03
47 28 0.27
48 2 0.02
49 33 0.32
50 34 0.33
51 3 0.03
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTCACATATCG
Found at i:64119481 original size:99 final size:97
Alignment explanation
Indices: 64119310--64119490 Score: 242
Period size: 96 Copynumber: 1.8 Consensus size: 97
64119300 TAATGCCTAT
* * * **
64119310 GCCATGTCCCAAATATGGTCTTACACTGGCTTAACCATCACGTCGATGCCATGTCCTAGGCATGG
1 GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG
64119375 TCTTACACTAAC-TATCAAAATCGAGGCTGAC
66 TCTTACACTAACATATCAAAATCGAGGCTGAC
*
64119406 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CAT-ATTCGTGCCGATGCCATGTCCCAAA
1 GCCATGTCCCAAACATGGTCTTACACTAGCT-TAACCATCA--CGT--CGATGCCATGTCCCAAA
64119469 CATGGTCTTACACTAACATATC
61 CATGGTCTTACACTAACATATC
64119491 TCGTAGCTGA
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
95 1 0.01
96 32 0.44
97 5 0.07
99 31 0.42
100 4 0.05
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (97 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG
TCTTACACTAACATATCAAAATCGAGGCTGAC
Found at i:64119500 original size:96 final size:93
Alignment explanation
Indices: 64119310--64119529 Score: 227
Period size: 96 Copynumber: 2.3 Consensus size: 93
64119300 TAATGCCTAT
* * * **
64119310 GCCATGTCCCAAATATGGTCTTACACTGGCTTAACCATCACGTCGATGCCATGTCCTAGGCATGG
1 GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG
64119375 TCTTACACTAACTATCAAAATCGAGGCTGAC
66 TCTTACACTAACTATC---ATCGAGGCTGAC
*
64119406 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CAT-ATTCGTGCCGATGCCATGTCCCAAA
1 GCCATGTCCCAAACATGGTCTTACACTAGCT-TAACCATCA--CGT--CGATGCCATGTCCCAAA
*
64119469 CATGGTCTTACACTAACATATC-TCGTA-GCTGAT
61 CATGGTCTTACACTAAC-TATCATCG-AGGCTGAC
* *
64119502 G-CATGTGCCAGACAT-GTCTTACACTAGC
1 GCCATGTCCCAAACATGGTCTTACACTAGC
64119530 ACACAAATAA
Statistics
Matches: 108, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
94 13 0.12
95 13 0.12
96 41 0.38
97 6 0.06
99 31 0.29
100 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (93 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG
TCTTACACTAACTATCATCGAGGCTGAC
Found at i:64119521 original size:44 final size:44
Alignment explanation
Indices: 64119406--64119527 Score: 131
Period size: 50 Copynumber: 2.6 Consensus size: 44
64119396 CGAGGCTGAC
64119406 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATTCGTGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTA------ACATATTCGTGCCGAT
*
64119456 GCCATGTCCCAAACATGGTCTTACACTAACATATCTCGTAGCTGAT
1 GCCATGTCCCAAACATGGTCTTACACTAACATAT-TCGT-GCCGAT
* *
64119502 G-CATGTGCCAGACAT-GTCTTACACTA
1 GCCATGTCCCAAACATGGTCTTACACTA
64119528 GCACACAAAT
Statistics
Matches: 67, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
44 17 0.25
45 16 0.24
46 6 0.09
50 28 0.42
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (44 bp):
GCCATGTCCCAAACATGGTCTTACACTAACATATTCGTGCCGAT
Found at i:64124801 original size:27 final size:25
Alignment explanation
Indices: 64124764--64124857 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 25
64124754 AATCCTAAAT
*
64124764 TAGGTAAAATGACTGTAATACCCTTG
1 TAGGTAAAATGACCGTAATACCC-TG
*
64124790 TAGGGTAAAATGACCGTAATGCCCCTG
1 TA-GGTAAAATGACCGTAAT-ACCCTG
64124817 TTAGGTAAAATGACCGTAATACCACTG
1 -TAGGTAAAATGACCGTAATACC-CTG
64124844 TATGGTAAAATGAC
1 TA-GGTAAAATGAC
64124858 AATTATGCCC
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
26 6 0.10
27 49 0.82
28 5 0.08
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (25 bp):
TAGGTAAAATGACCGTAATACCCTG
Found at i:64124866 original size:54 final size:54
Alignment explanation
Indices: 64124763--64124867 Score: 149
Period size: 54 Copynumber: 1.9 Consensus size: 54
64124753 AAATCCTAAA
* **
64124763 TTAGGTAAAATGACTGTAATACCCTTGTAGGGTAAAATGACCGTAATGCCCCTG
1 TTAGGTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACAATAATGCCCCTG
* *
64124817 TTAGGTAAAATGACCGTAATACCAC-TGTATGGTAAAATGACAATTATGCCC
1 TTAGGTAAAATGACCGTAATACC-CTTGTAGGGTAAAATGACAATAATGCCC
64124868 TTATGTTTCG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
54 44 0.98
55 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (54 bp):
TTAGGTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACAATAATGCCCCTG
Found at i:64129483 original size:24 final size:24
Alignment explanation
Indices: 64129456--64129518 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
64129446 CTTATTATGT
64129456 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64129480 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64129504 TCGCACACATAGTGC
1 TCGCACACATAGTGC
64129519 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:64131790 original size:2 final size:2
Alignment explanation
Indices: 64131783--64131812 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
64131773 ACTCTTGTAC
64131783 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64131813 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64132589 original size:29 final size:28
Alignment explanation
Indices: 64132487--64132590 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
64132477 GTGACAAGAT
*
64132487 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* * *
64132516 TGGCACTAAGTGTACGAACTTAAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
64132545 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
64132574 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
64132591 AATCGATTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 4 0.06
29 59 0.94
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:64140508 original size:24 final size:24
Alignment explanation
Indices: 64140481--64140543 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
64140471 CTTATTATGT
64140481 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64140505 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64140529 TCGCACACATAGTGC
1 TCGCACACATAGTGC
64140544 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:64148281 original size:24 final size:24
Alignment explanation
Indices: 64148254--64148316 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
64148244 CTTATTATGT
64148254 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64148278 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64148302 TCGCACACATAGTGC
1 TCGCACACATAGTGC
64148317 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:64151109 original size:27 final size:28
Alignment explanation
Indices: 64151079--64151148 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
64151069 ATAATAAGTC
*
64151079 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
64151106 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
64151134 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64151149 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64154007 original size:40 final size:40
Alignment explanation
Indices: 64153825--64154011 Score: 185
Period size: 40 Copynumber: 4.7 Consensus size: 40
64153815 CAATTGAATG
* * * *
64153825 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
** * * * *
64153865 ATATCCGGATTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
64153905 ACATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
64153945 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* *
64153985 CTATCCGGTCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
64154012 CGAGCATGTG
Statistics
Matches: 118, Mismatches: 29, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 118 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:64159248 original size:78 final size:79
Alignment explanation
Indices: 64159062--64159262 Score: 293
Period size: 78 Copynumber: 2.6 Consensus size: 79
64159052 TCGAATGATG
* * *
64159062 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGATCCAAAGGCATTT
64159126 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
*
64159141 T-CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGACT-AGATCCAAAGGCATTT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCAAAGGCATTT
64159203 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* *
64159218 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGG
64159263 GCTATGTCCC
Statistics
Matches: 110, Mismatches: 7, Indels: 10
0.87 0.06 0.08
Matches are distributed among these distances:
77 32 0.29
78 49 0.45
79 22 0.20
80 7 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCAAAGGCATTTG
TGCGAGTTACTAAA
Found at i:64159249 original size:40 final size:40
Alignment explanation
Indices: 64159062--64159283 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
64159052 TCGAATGATG
* * * *
64159062 TCCGGGCTAAG-TCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGATCCGAAGGCATTTGTGC-GAGTTACTAAA
64159101 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
64159141 T-CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
64159179 TCCGGACT-AGATCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
64159218 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
64159259 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
64159284 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 30 0.18
39 60 0.36
40 67 0.40
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64166379 original size:2 final size:2
Alignment explanation
Indices: 64166372--64166397 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64166362 GCTCTTGCAC
64166372 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
64166398 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64167162 original size:40 final size:40
Alignment explanation
Indices: 64167105--64167330 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
64167095 TAGAATGATG
* * * *
64167105 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
64167145 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64167185 TCCGGACTAAGATCTGAAGGCATTTGTGCGAGTTACTCAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
64167225 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
64167265 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
64167306 -CCGGGCTATG-TCTCGAAGGCATTTG
1 TCCGGACTAAGATC-CGAAGGCATTTG
64167331 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 2 0.01
40 156 0.93
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64167349 original size:80 final size:80
Alignment explanation
Indices: 64167105--64167330 Score: 307
Period size: 80 Copynumber: 2.8 Consensus size: 80
64167095 TAGAATGATG
* *
64167105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGATCCGAAGGCATT
*
64167169 CGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
64167185 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTCA-ATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGACTAAGATCCGAAGGCAT
64167248 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
* * * *
64167265 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-TCTCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATC-CGAAGGCATT
64167329 TG
65 TG
64167331 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
79 4 0.03
80 116 0.90
81 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:64170577 original size:48 final size:48
Alignment explanation
Indices: 64170506--64170891 Score: 637
Period size: 48 Copynumber: 8.0 Consensus size: 48
64170496 TGTACAAGAT
*
64170506 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
64170554 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * *
64170602 AAATATGTATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* * *
64170650 AAATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCGAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* *
64170698 AAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCGAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* *
64170746 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* *
64170794 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
* *
64170842 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
64170890 AA
1 AA
64170892 TGTTGTAACA
Statistics
Matches: 317, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 317 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
Found at i:64170989 original size:37 final size:37
Alignment explanation
Indices: 64170936--64171043 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
64170926 GGAAATGTAT
64170936 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
64170973 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
64171010 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
64171044 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64176650 original size:29 final size:28
Alignment explanation
Indices: 64176618--64176675 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 28
64176608 CATATTCATC
*
64176618 TGGCCTATTTGGCCCAAATCACCTTTATA
1 TGGCCTATTAGGCCCAAATCACC-TTATA
*
64176647 TGGCCTGTTAGGCCCAAATCACCTTATA
1 TGGCCTATTAGGCCCAAATCACCTTATA
64176675 T
1 T
64176676 TCATGCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (28 bp):
TGGCCTATTAGGCCCAAATCACCTTATA
Found at i:64178423 original size:39 final size:39
Alignment explanation
Indices: 64178378--64178490 Score: 145
Period size: 39 Copynumber: 2.9 Consensus size: 39
64178368 TATCTGGGCT
* *
64178378 TAAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCAGAC
1 TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCCAGAC
* * **
64178417 TTAAGATCCGCAGGCTTCGTGCTGGTACTATATCTGGAC
1 TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCCAGAC
* * *
64178456 TAAAGGTCCGCAGGCTTCGTACTGGTACTATATCC
1 TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCC
64178491 GGGCTTAAAG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (39 bp):
TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCCAGAC
Found at i:64193693 original size:16 final size:16
Alignment explanation
Indices: 64193667--64193704 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
64193657 ACTAGATCGG
64193667 CAAAA-GCCGAAAAGC
1 CAAAATGCCGAAAAGC
* *
64193682 CGAAATGCCGAAATGC
1 CAAAATGCCGAAAAGC
64193698 CAAAATG
1 CAAAATG
64193705 ACAAAAAAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.47, C:0.24, G:0.21, T:0.08
Consensus pattern (16 bp):
CAAAATGCCGAAAAGC
Found at i:64194173 original size:28 final size:28
Alignment explanation
Indices: 64194132--64194231 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 28
64194122 AGGAAGCATC
*
64194132 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* *
64194160 CTGGTGGCTCTGCCACATA-TATCTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
*
64194187 CTGGTGGCTCTGCCAC-GATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTG-AT
* *
64194215 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
64194232 TTATTTGTTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.02
27 29 0.47
28 32 0.52
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:64194190 original size:27 final size:26
Alignment explanation
Indices: 64194132--64194244 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
64194122 AGGAAGCATC
* *
64194132 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
64194160 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
64194187 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
64194215 CTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
64194241 CTGG
1 CTGG
64194245 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
26 7 0.09
27 38 0.49
28 32 0.42
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:64194217 original size:55 final size:54
Alignment explanation
Indices: 64194132--64194244 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
64194122 AGGAAGCATC
*
64194132 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
64194187 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
64194241 CTGG
1 CTGG
64194245 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 19 0.37
55 33 0.63
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:64197724 original size:50 final size:50
Alignment explanation
Indices: 64197600--64197889 Score: 260
Period size: 50 Copynumber: 5.8 Consensus size: 50
64197590 AACCGAAGCT
* * * * *
64197600 ATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACA
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC
64197649 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC
* * * **
64197699 ATCTGATACACGTAGTAGCCTACACTTAGTACTACACACATGA-TTGAAGTT
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCT-AA-CC
* * * * * * * * * *
64197750 GTCGGGTACGCATAGTAGCCTGCACTTAGTGCTACTCATGCGACCTAACT
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC
* * *
64197800 ATCTGGTACACGTAGTAGCCTGCACCTAGTACTACACACGTGACGTAAAACC
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCT--AACC
*** * * * *
64197852 ATCTTAAACACATAGTAGCTTGCACATAGTACTACACA
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACA
64197890 TATGTTCTAA
Statistics
Matches: 195, Mismatches: 40, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
49 42 0.22
50 83 0.43
51 34 0.17
52 36 0.18
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC
Found at i:64197889 original size:151 final size:149
Alignment explanation
Indices: 64197604--64197890 Score: 414
Period size: 151 Copynumber: 1.9 Consensus size: 149
64197594 GAAGCTATCT
64197604 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
* * * *
64197669 TACACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
66 TACACCTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTA-
64197734 ACACATGATTGAAGTTGTCG
130 ACACATGATTGAAGTTGTCG
* * * *
64197754 GGTACGCATAGTAGCCTGCACTTAGTGCTACTCATGCGACCTAACTATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACAATCTGGTACACGTAGTAGC
* * * * *
64197819 CTGCACCTAGTACTACACACGTGACGTAAAACCATCTTAAACACATAGTAGCTTGCACATAGTAC
65 CTACACCTAGTACTACACACGTGACCT--AACCATCTGAAACACATAGTAGCCTACACATAGTAC
64197884 T-ACACAT
128 TAACACAT
64197891 ATGTTCTAAA
Statistics
Matches: 121, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
150 38 0.31
151 52 0.43
153 31 0.26
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (149 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
TACACCTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTAA
CACATGATTGAAGTTGTCG
Found at i:64201485 original size:28 final size:27
Alignment explanation
Indices: 64201420--64201489 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
64201410 ATAGTGAGTC
* *
64201420 CGCACACTTAGTACTATATGATCATCT
1 CGCACACTTAGTGCTATATAATCATCT
64201447 CGCACACTTAGTGCTATATAATCAAAT-T
1 CGCACACTTAGTGCTATATAATC--ATCT
64201475 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64201490 GTACAAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
27 21 0.54
28 16 0.41
29 2 0.05
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCATCT
Found at i:64208860 original size:29 final size:29
Alignment explanation
Indices: 64208792--64208852 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
64208782 ACGAGATTGG
*
64208792 ACTAAGTGTGCATGCTGGAAATATATGGC
1 ACTAAGTGTGCATGCTGGAAATATACGGC
64208821 ACTAAGTGTGCATGCTGGAAATATACGGC
1 ACTAAGTGTGCATGCTGGAAATATACGGC
64208850 ACT
1 ACT
64208853 GGGTGTGCGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCATGCTGGAAATATACGGC
Found at i:64208958 original size:2 final size:2
Alignment explanation
Indices: 64208953--64208983 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
64208943 GTGTGTACTC
64208953 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64208984 CTCCGATCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64216068 original size:24 final size:24
Alignment explanation
Indices: 64216041--64216103 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
64216031 CTTATTATGT
64216041 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64216065 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64216089 TCGCACACATAGTGC
1 TCGCACACATAGTGC
64216104 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:64221952 original size:40 final size:40
Alignment explanation
Indices: 64221825--64221954 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
64221815 ATGCTGGAAA
* *
64221825 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
64221865 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
64221905 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
64221945 TTATATCCGG
1 TTATATCCGG
64221955 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:64221953 original size:80 final size:79
Alignment explanation
Indices: 64221788--64221954 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
64221778 CAATTGAATG
* *
64221788 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
64221853 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
64221867 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
64221931 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
64221947 ATATCCGG
1 ATATCCGG
64221955 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:64229994 original size:40 final size:40
Alignment explanation
Indices: 64229867--64229996 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
64229857 ATGCTGGAAA
* *
64229867 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
64229907 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
64229947 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
64229987 TTATATCCGG
1 TTATATCCGG
64229997 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:64251560 original size:29 final size:29
Alignment explanation
Indices: 64251494--64251620 Score: 166
Period size: 29 Copynumber: 4.3 Consensus size: 29
64251484 AAGTCTACAT
* * *
64251494 ACATGCATATGGCCTACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
64251522 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
64251551 ATATTCATATGGCCCATTAGGACCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
64251580 ACATTCATACGGTGCCCATTAGGCCCAAATC
1 ACATTCATA-TG-GCCCATTAGGCCCAAATC
64251611 ACATTCATAT
1 ACATTCATAT
64251621 ACATGCTTTC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
28 20 0.24
29 38 0.45
30 1 0.01
31 26 0.31
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:64251601 original size:60 final size:57
Alignment explanation
Indices: 64251494--64251620 Score: 164
Period size: 60 Copynumber: 2.2 Consensus size: 57
64251484 AAGTCTACAT
* * * * *
64251494 ACATGCATATGGCCTACTAGGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCAAATCACATTCATAGGGCCCATTAGGCCCAAATC
* *
64251551 ATATTCATATGGCCCATTAGGACCAAATCACATTCATACGGTGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGG-CCAAATCACATTCATA-GG-GCCCATTAGGCCCAAATC
64251611 ACATTCATAT
1 ACATTCATAT
64251621 ACATGCTTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
57 17 0.29
58 14 0.24
59 1 0.02
60 27 0.46
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (57 bp):
ACATTCATATGGCCCACTAGGCCAAATCACATTCATAGGGCCCATTAGGCCCAAATC
Found at i:64251824 original size:8 final size:8
Alignment explanation
Indices: 64251810--64251864 Score: 58
Period size: 8 Copynumber: 7.0 Consensus size: 8
64251800 CATAGCCAAA
64251810 CTTTT-GG
1 CTTTTCGG
*
64251817 CTTTTTGG
1 CTTTTCGG
* *
64251825 CATTTCGA
1 CTTTTCGG
64251833 CTTTTCGG
1 CTTTTCGG
*
64251841 CATTTCGG
1 CTTTTCGG
64251849 CTTTTCGG
1 CTTTTCGG
*
64251857 CATTTCGG
1 CTTTTCGG
64251865 GATTTACCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
7 5 0.13
8 34 0.87
ACGTcount: A:0.07, C:0.22, G:0.24, T:0.47
Consensus pattern (8 bp):
CTTTTCGG
Done.