Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr07 97507971 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 97507971 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 232 characters in sequence are not A, C, G, or T File 213 of 328 Found at i:63898580 original size:28 final size:27 Alignment explanation
Indices: 63898514--63898583 Score: 113 Period size: 27 Copynumber: 2.6 Consensus size: 27 63898504 ATAGTGAGTC * 63898514 CGCACACTTAGTGCTATATAATCAGCT 1 CGCACACTTAGTGCTATATAATCAACT * 63898541 CGCACACTTAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATATAATC-AACT 63898569 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 63898584 GTACAAATTT Statistics Matches: 40, Mismatches: 2, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 27 23 0.57 28 17 0.43 ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:63899074 original size:2 final size:2 Alignment explanation
Indices: 63899061--63899092 Score: 55 Period size: 2 Copynumber: 16.0 Consensus size: 2 63899051 CATACTTATG * 63899061 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 63899093 CACTTCCAAA Statistics Matches: 28, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (2 bp): TA Found at i:63900534 original size:39 final size:39 Alignment explanation
Indices: 63900476--63900786 Score: 478 Period size: 39 Copynumber: 8.0 Consensus size: 39 63900466 AAGACACTGA * 63900476 AAATGTATCTGGGCCAAAGTCCCGCAGGCTTCGTGCTGG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG * * * 63900515 AAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTGTTGG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG * * 63900554 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG * * * 63900593 AAATATATCCGGGCCAAAGTCCTGCAGGCTTCATGCTGG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG * * 63900632 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG * 63900671 AAATGTATCTGGGCCAAAGTCCCGCAGGCTTCGTGCTGG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG 63900710 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG * ** * 63900749 AAATGTATTCGGGTTAAAGTCCCGCAGGCTTTGTGCTG 1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTG 63900787 ATAATATAAT Statistics Matches: 249, Mismatches: 23, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 39 249 1.00 ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24 Consensus pattern (39 bp): AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG Found at i:63903089 original size:22 final size:20 Alignment explanation
Indices: 63903037--63903083 Score: 76 Period size: 20 Copynumber: 2.4 Consensus size: 20 63903027 TGGGCTGAGG * 63903037 ACACGAGTGTGTCCCATGCC 1 ACACGGGTGTGTCCCATGCC 63903057 ACACGGGTGTGTCCCATGCC 1 ACACGGGTGTGTCCCATGCC * 63903077 ATACGGG 1 ACACGGG 63903084 CATGTGTGGC Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 20 25 1.00 ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19 Consensus pattern (20 bp): ACACGGGTGTGTCCCATGCC Found at i:63908756 original size:13 final size:13 Alignment explanation
Indices: 63908738--63908808 Score: 106 Period size: 13 Copynumber: 5.5 Consensus size: 13 63908728 AAATTTTTTC 63908738 AAAGCACTTCTCA 1 AAAGCACTTCTCA 63908751 AAAGCACTTCTCA 1 AAAGCACTTCTCA * 63908764 AAAGTACTTCTCA 1 AAAGCACTTCTCA * 63908777 AAAGCACTTCTCC 1 AAAGCACTTCTCA * * 63908790 ACAGCACTTTTCA 1 AAAGCACTTCTCA 63908803 AAAGCA 1 AAAGCA 63908809 ATGAAGAACT Statistics Matches: 51, Mismatches: 7, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 13 51 1.00 ACGTcount: A:0.38, C:0.30, G:0.08, T:0.24 Consensus pattern (13 bp): AAAGCACTTCTCA Found at i:63909083 original size:51 final size:49 Alignment explanation
Indices: 63908945--63909085 Score: 165 Period size: 51 Copynumber: 2.8 Consensus size: 49 63908935 AGGTGGAAGC * * * * * 63908945 AGTGGCAATATATCTGTAAATCAGTGGTGGCTTGTCTACAAAACTTATC 1 AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAATTATA * * 63908994 AGTGGCAGTATATCTGCATATCAGTGGTGGCTTATCCACAAAAGTATTATA 1 AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAA--ATTATA * * * * 63909045 AGTGGCAGTTTATTTGCAAATCAGTAGTGGTTTGTCCACAA 1 AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAA 63909086 CTGGTGTTTC Statistics Matches: 77, Mismatches: 13, Indels: 2 0.84 0.14 0.02 Matches are distributed among these distances: 49 38 0.49 51 39 0.51 ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33 Consensus pattern (49 bp): AGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAATTATA Found at i:63927343 original size:49 final size:49 Alignment explanation
Indices: 63927287--63927413 Score: 209 Period size: 49 Copynumber: 2.6 Consensus size: 49 63927277 TACATATATG * * * * 63927287 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA 1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA 63927336 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA 1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA * 63927385 TGTGATGAGGCCTAATGGCCGATGTGATG 1 TGTGATAAGGCCTAATGGCCGATGTGATG 63927414 TGTATATGTG Statistics Matches: 73, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 49 73 1.00 ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28 Consensus pattern (49 bp): TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA Found at i:63927421 original size:35 final size:35 Alignment explanation
Indices: 63927379--63927448 Score: 140 Period size: 35 Copynumber: 2.0 Consensus size: 35 63927369 TGAAAGTGGA 63927379 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG 1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG 63927414 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG 1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATG 63927449 AATGTGAAAG Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 35 35 1.00 ACGTcount: A:0.23, C:0.11, G:0.34, T:0.31 Consensus pattern (35 bp): TGTATATGTGATGAGGCCTAATGGCCGATGTGATG Found at i:63927468 original size:49 final size:49 Alignment explanation
Indices: 63927414--63927571 Score: 307 Period size: 49 Copynumber: 3.2 Consensus size: 49 63927404 CGATGTGATG * 63927414 TGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA 1 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA 63927463 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA 1 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA 63927512 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA 1 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA 63927561 TGTATATGTGA 1 TGTATATGTGA 63927572 ATGTGGTGAA Statistics Matches: 108, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 49 108 1.00 ACGTcount: A:0.27, C:0.08, G:0.34, T:0.32 Consensus pattern (49 bp): TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA Found at i:63927471 original size:84 final size:84 Alignment explanation
Indices: 63927330--63927494 Score: 312 Period size: 84 Copynumber: 2.0 Consensus size: 84 63927320 TGAAAGTGTA 63927330 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG 1 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG 63927395 CCTAATGGCCGATGTGATG 66 CCTAATGGCCGATGTGATG * * 63927414 TGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGG 1 TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG 63927479 CCTAATGGCCGATGTG 66 CCTAATGGCCGATGTG 63927495 GTGAATGTGA Statistics Matches: 79, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 84 79 1.00 ACGTcount: A:0.27, C:0.10, G:0.33, T:0.30 Consensus pattern (84 bp): TGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGG CCTAATGGCCGATGTGATG Found at i:63927482 original size:133 final size:129 Alignment explanation
Indices: 63927287--63927618 Score: 465 Period size: 133 Copynumber: 2.5 Consensus size: 129 63927277 TACATATATG * * * 63927287 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT 1 TGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT 63927352 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGATGTGT 66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTG--GTG- 63927417 ATA 128 A-A * * 63927420 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT 1 TGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT * * 63927485 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA 66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA * * 63927549 TGTGAAAGTGTATG--TATATGTG--AATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGG 1 TGTG--A-TG-AGGCCTA-ATG-GCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGG 63927610 CCTAATGGC 60 CCTAATGGC 63927619 TAATGTAAAA Statistics Matches: 182, Mismatches: 11, Indels: 14 0.88 0.05 0.07 Matches are distributed among these distances: 129 5 0.03 130 1 0.01 131 51 0.28 132 5 0.03 133 120 0.66 ACGTcount: A:0.28, C:0.08, G:0.33, T:0.30 Consensus pattern (129 bp): TGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA Found at i:63927577 original size:33 final size:33 Alignment explanation
Indices: 63927539--63927604 Score: 132 Period size: 33 Copynumber: 2.0 Consensus size: 33 63927529 CTAATGGCCG 63927539 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA 1 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA 63927572 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA 1 ATGTGGTGAATGTGAAAGTGTATGTATATGTGA 63927605 TAAGGCCTAA Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 33 33 1.00 ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36 Consensus pattern (33 bp): ATGTGGTGAATGTGAAAGTGTATGTATATGTGA Found at i:63927770 original size:37 final size:37 Alignment explanation
Indices: 63927720--63927804 Score: 152 Period size: 37 Copynumber: 2.3 Consensus size: 37 63927710 GGAATATGTT * 63927720 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA 1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA * 63927757 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT 1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA 63927794 CCGGGTAAGAC 1 CCGGGTAAGAC 63927805 TTCTTTTATA Statistics Matches: 46, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 37 46 1.00 ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21 Consensus pattern (37 bp): CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA Found at i:63929698 original size:40 final size:40 Alignment explanation
Indices: 63929616--63929700 Score: 107 Period size: 40 Copynumber: 2.1 Consensus size: 40 63929606 GAGAATTGAG ** * * * 63929616 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT 1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT * * 63929656 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT 1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT 63929696 AGTGA 1 AGTGA 63929701 CGTGTATTCG Statistics Matches: 38, Mismatches: 7, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 40 38 1.00 ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24 Consensus pattern (40 bp): AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT Found at i:63929940 original size:29 final size:29 Alignment explanation
Indices: 63929898--63930058 Score: 274 Period size: 29 Copynumber: 5.7 Consensus size: 29 63929888 GCGAATGATT 63929898 GAGGCACTATGTGTGCGAGATCAGTAATC 1 GAGGCACTATGTGTGCGAGATCAGTAATC 63929927 GAGGCACTATGTGTGCGAGATCAGTAATC 1 GAGGCACTATGTGTGCGAGATCAGTAATC 63929956 GAGGCACTATGTGTGCGAGATCAGTAATC 1 GAGGCACTATGTGTGCGAGATCAGTAATC * 63929985 GAGGCACTATGTGTGTGAGATC-GTAATC 1 GAGGCACTATGTGTGCGAGATCAGTAATC * 63930013 GAGGCACTATGTGT--GAGATCAGTAATT 1 GAGGCACTATGTGTGCGAGATCAGTAATC * 63930040 GAGGCACTGTGTGTGCGAG 1 GAGGCACTATGTGTGCGAG 63930059 TTTTTCAACA Statistics Matches: 126, Mismatches: 3, Indels: 6 0.93 0.02 0.04 Matches are distributed among these distances: 26 6 0.05 27 18 0.14 28 20 0.16 29 82 0.65 ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25 Consensus pattern (29 bp): GAGGCACTATGTGTGCGAGATCAGTAATC Found at i:63930639 original size:40 final size:41 Alignment explanation
Indices: 63930541--63930639 Score: 114 Period size: 41 Copynumber: 2.4 Consensus size: 41 63930531 TTCGAATGGT * ** * * 63930541 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA 1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA 63930582 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA 1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A 63930623 A-CCGGGCTATGTCCCGA 1 ATCCGGGCTATGTCCCGA 63930640 GGACAATCGA Statistics Matches: 50, Mismatches: 5, Indels: 7 0.81 0.08 0.11 Matches are distributed among these distances: 39 2 0.04 40 18 0.36 41 29 0.58 42 1 0.02 ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25 Consensus pattern (41 bp): ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA Found at i:63933415 original size:49 final size:49 Alignment explanation
Indices: 63933359--63933646 Score: 427 Period size: 49 Copynumber: 6.1 Consensus size: 49 63933349 TACATATATG * * * * 63933359 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA 1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA * * 63933408 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA 1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA 63933457 TGTGATGAGGCCTAATGGCCGA--TG-TG-A--T-AAA-TG--TGTATA 1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA 63933496 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA 1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA * 63933545 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA 1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA * 63933594 TGTGATGAGGCCTAATGG-CGATGTGGTGAATGTGAAAGTGTATGTATA 1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA 63933642 TGTGA 1 TGTGA 63933647 CCGATGTGGT Statistics Matches: 223, Mismatches: 6, Indels: 21 0.89 0.02 0.08 Matches are distributed among these distances: 39 28 0.13 41 4 0.02 42 5 0.02 43 2 0.01 45 2 0.01 46 5 0.02 47 4 0.02 48 35 0.16 49 138 0.62 ACGTcount: A:0.29, C:0.08, G:0.33, T:0.30 Consensus pattern (49 bp): TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA Found at i:63933495 original size:39 final size:39 Alignment explanation
Indices: 63933451--63933530 Score: 151 Period size: 39 Copynumber: 2.1 Consensus size: 39 63933441 TGAAAGTGGA 63933451 TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG 1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG * 63933490 TGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATG 1 TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG 63933529 TG 1 TG 63933531 AAAGTGTATG Statistics Matches: 40, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 39 40 1.00 ACGTcount: A:0.26, C:0.10, G:0.33, T:0.31 Consensus pattern (39 bp): TGTATATGTGATGAGGCCTAATGGCCGATGTGATAAATG Found at i:63933525 original size:137 final size:133 Alignment explanation
Indices: 63933359--63933696 Score: 484 Period size: 137 Copynumber: 2.5 Consensus size: 133 63933349 TACATATATG * * * 63933359 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT 1 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT 63933424 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGATAAAT 65 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGG-CGATGTGATAAAT 63933489 GTGTATA 129 GTG-A-A * 63933496 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT 1 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT * * * * 63933561 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCGATGTGGTGAATG 65 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCGATGTGATAAATG 63933626 TGAA 130 TGAA * * * 63933630 AGTG-TATG--TATATGTGACCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA 1 TGTGATAGGCCTA-ATG-G-CCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTA 63933692 ATGGC 63 ATGGC 63933697 TAATGTAAAA Statistics Matches: 185, Mismatches: 13, Indels: 10 0.89 0.06 0.05 Matches are distributed among these distances: 130 2 0.01 131 3 0.02 132 3 0.02 133 49 0.26 134 4 0.02 135 1 0.01 136 14 0.08 137 109 0.59 ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30 Consensus pattern (133 bp): TGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATG GCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCGATGTGATAAATGT GAA Found at i:63933551 original size:88 final size:95 Alignment explanation
Indices: 63933359--63933646 Score: 396 Period size: 88 Copynumber: 3.1 Consensus size: 95 63933349 TACATATATG * * * * 63933359 TGTGATAAGGCCGAATGGCC-AATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAA 1 TGTGATGAGGCCTAATGGCCGAGTG-G-TGAA-GTGAAAGTG-ATGTATATGTGATGAGGCCTAA * 63933423 TGGCCGATGTGATGAATGTGAAAGTGGATGTATA 62 TGGCCGATGTGATGAATGTGAAAGTGTATGTATA 63933457 TGTGATGAGGCCTAATGGCCGA-T-GTG-A-T-AAA-TG-TGTATATGTGATGAGGCCTAATGGC 1 TGTGATGAGGCCTAATGGCCGAGTGGTGAAGTGAAAGTGATGTATATGTGATGAGGCCTAATGGC 63933515 CGATGTGATGAATGTGAAAGTGTATGTATA 66 CGATGTGATGAATGTGAAAGTGTATGTATA 63933545 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT 1 TGTGATGAGGCCTAATGGCCGA-GTGGTGAA-GTGAAAGTG-ATGTATATGTGATGAGGCCTAAT * 63933610 GG-CGATGTGGTGAATGTGAAAGTGTATGTATA 63 GGCCGATGTGATGAATGTGAAAGTGTATGTATA 63933642 TGTGA 1 TGTGA 63933647 CCGATGTGGT Statistics Matches: 174, Mismatches: 5, Indels: 23 0.86 0.02 0.11 Matches are distributed among these distances: 88 75 0.43 90 3 0.02 91 6 0.03 92 2 0.01 94 2 0.01 95 5 0.03 96 3 0.02 97 34 0.20 98 43 0.25 99 1 0.01 ACGTcount: A:0.29, C:0.08, G:0.33, T:0.30 Consensus pattern (95 bp): TGTGATGAGGCCTAATGGCCGAGTGGTGAAGTGAAAGTGATGTATATGTGATGAGGCCTAATGGC CGATGTGATGAATGTGAAAGTGTATGTATA Found at i:63933646 original size:18 final size:18 Alignment explanation
Indices: 63933623--63933682 Score: 61 Period size: 18 Copynumber: 3.3 Consensus size: 18 63933613 GATGTGGTGA 63933623 ATGTGAAAGTGTATGTAT 1 ATGTGAAAGTGTATGTAT ** * 63933641 ATGTGACCGATGT-GGTGA- 1 ATGTGAAAG-TGTATGT-AT 63933659 ATGTGAAAGTGTATGTAT 1 ATGTGAAAGTGTATGTAT 63933677 ATGTGA 1 ATGTGA 63933683 TAAGGCCTAA Statistics Matches: 32, Mismatches: 6, Indels: 8 0.70 0.13 0.17 Matches are distributed among these distances: 17 4 0.12 18 24 0.75 19 4 0.12 ACGTcount: A:0.30, C:0.03, G:0.32, T:0.35 Consensus pattern (18 bp): ATGTGAAAGTGTATGTAT Found at i:63933652 original size:36 final size:36 Alignment explanation
Indices: 63933612--63933682 Score: 142 Period size: 36 Copynumber: 2.0 Consensus size: 36 63933602 GGCCTAATGG 63933612 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAC 1 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAC 63933648 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGA 1 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGA 63933683 TAAGGCCTAA Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 36 35 1.00 ACGTcount: A:0.28, C:0.04, G:0.34, T:0.34 Consensus pattern (36 bp): CGATGTGGTGAATGTGAAAGTGTATGTATATGTGAC Found at i:63933853 original size:37 final size:37 Alignment explanation
Indices: 63933798--63933882 Score: 143 Period size: 37 Copynumber: 2.3 Consensus size: 37 63933788 GGAATATGTT * 63933798 CCGGGTGAGACCCAATGACTACGTGTGGAGATTATGA 1 CCGGGTAAGACCCAATGACTACGTGTGGAGATTATGA * * 63933835 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT 1 CCGGGTAAGACCCAATGACTACGTGTGGAGATTATGA 63933872 CCGGGTAAGAC 1 CCGGGTAAGAC 63933883 TTCTTTTATA Statistics Matches: 45, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 37 45 1.00 ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21 Consensus pattern (37 bp): CCGGGTAAGACCCAATGACTACGTGTGGAGATTATGA Found at i:63935638 original size:28 final size:28 Alignment explanation
Indices: 63935569--63935669 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63935559 GACAAGATTG * * * * 63935569 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 63935599 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 63935627 GCACTAAGTGTGCGAG-TTGAATACATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 63935656 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 63935670 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.05 28 24 0.38 29 19 0.30 30 18 0.28 ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:63939106 original size:28 final size:28 Alignment explanation
Indices: 63939037--63939137 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63939027 GACAAGATTG * * * * 63939037 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 63939067 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 63939095 GCACTAAGTGTGCGAG-TTGAATACATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 63939124 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 63939138 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.05 28 24 0.38 29 19 0.30 30 18 0.28 ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:63947039 original size:28 final size:28 Alignment explanation
Indices: 63946970--63947070 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63946960 GACAAGATTG * * * * 63946970 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 63947000 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 63947028 GCACTAAGTGTGCGAG-TTGAATACATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 63947057 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 63947071 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.05 28 24 0.38 29 19 0.30 30 18 0.28 ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:63954640 original size:28 final size:28 Alignment explanation
Indices: 63954571--63954671 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 63954561 GACAAGATTG * * * * 63954571 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 63954601 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 63954629 GCACTAAGTGTGCGAG-TTGAATACATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 63954658 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 63954672 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.05 28 24 0.38 29 19 0.30 30 18 0.28 ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:63957311 original size:42 final size:42 Alignment explanation
Indices: 63957234--63957321 Score: 113 Period size: 42 Copynumber: 2.1 Consensus size: 42 63957224 GTTAGTGAGA *** * 63957234 TACATAGCCTAGCACATGGGCGTGTGGGGAAACTCAGAGAGT 1 TACATAGCCTAGCACATGGGCGTGTGACCAAACTCAAAGAGT * ** 63957276 TACATGGCCTAGCACATGGGCGTGTGACCCTACTCAAAGAGT 1 TACATAGCCTAGCACATGGGCGTGTGACCAAACTCAAAGAGT 63957318 TACA 1 TACA 63957322 CGGGTGAGGA Statistics Matches: 39, Mismatches: 7, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 42 39 1.00 ACGTcount: A:0.28, C:0.23, G:0.28, T:0.20 Consensus pattern (42 bp): TACATAGCCTAGCACATGGGCGTGTGACCAAACTCAAAGAGT Found at i:63957688 original size:38 final size:38 Alignment explanation
Indices: 63957637--63957712 Score: 152 Period size: 38 Copynumber: 2.0 Consensus size: 38 63957627 ATGTGTGAGT 63957637 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA 1 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA 63957675 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA 1 AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA 63957713 CTTTAGAATA Statistics Matches: 38, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 38 38 1.00 ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18 Consensus pattern (38 bp): AGCGAGGAAATGATCCAAGTCACATTCCTAAAAGTAAA Found at i:63962068 original size:37 final size:37 Alignment explanation
Indices: 63962021--63962113 Score: 168 Period size: 37 Copynumber: 2.5 Consensus size: 37 63962011 GTCCCCACGT * 63962021 GTAGTTATCGGGTCTTACCCGGACAAAATCTCCACAC 1 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC * 63962058 GTAGTCATCGGGTCTTACCCGGACATAATCTCCACAC 1 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC 63962095 GTAGTCATCGGGTCTTACC 1 GTAGTCATCGGGTCTTACC 63962114 GGAATATATT Statistics Matches: 54, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 37 54 1.00 ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26 Consensus pattern (37 bp): GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC Found at i:63962315 original size:48 final size:48 Alignment explanation
Indices: 63962257--63962923 Score: 1136 Period size: 48 Copynumber: 13.9 Consensus size: 48 63962247 ATATACACAC * 63962257 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * * 63962305 ATCTCATACATATTTCGCACTAGCCATTCGGCTTTACCACATATATATAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATACAT * 63962355 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 63962403 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 63962451 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 63962499 ATCTCATACATATTTTACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 63962547 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * * 63962595 ATCTCATACATATTTCACAGTAGCCATTCGCCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * * 63962643 ATCTCATTCATATTTTACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 63962691 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 63962739 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * * * 63962787 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATGTACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * 63962835 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT * * 63962883 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA 1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA 63962924 CACATATATA Statistics Matches: 590, Mismatches: 27, Indels: 4 0.95 0.04 0.01 Matches are distributed among these distances: 48 545 0.92 50 45 0.08 ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35 Consensus pattern (48 bp): ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT Found at i:63966594 original size:40 final size:40 Alignment explanation
Indices: 63966535--63966742 Score: 236 Period size: 40 Copynumber: 5.2 Consensus size: 40 63966525 CAATTGAATG * * * * * 63966535 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT * * * * * 63966575 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT * * * 63966615 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT * * * 63966655 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT * * * * 63966695 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT 63966735 ATATCCGG 1 ATATCCGG 63966743 TTGTATTCCG Statistics Matches: 142, Mismatches: 26, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 40 142 1.00 ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT Found at i:63977899 original size:27 final size:27 Alignment explanation
Indices: 63977842--63977899 Score: 62 Period size: 27 Copynumber: 2.1 Consensus size: 27 63977832 TCTGTCAATT ** * 63977842 TACCTTACCGGGGTATTGTAGTCATTT 1 TACCTTACAAGGGTATTGTAGTCATTC * * * 63977869 TACCTTACAAGGGTATTTTGGTTATTC 1 TACCTTACAAGGGTATTGTAGTCATTC 63977896 TACC 1 TACC 63977900 CTATGGGGGT Statistics Matches: 25, Mismatches: 6, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 27 25 1.00 ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41 Consensus pattern (27 bp): TACCTTACAAGGGTATTGTAGTCATTC Found at i:63977954 original size:27 final size:27 Alignment explanation
Indices: 63977917--63978049 Score: 203 Period size: 27 Copynumber: 4.9 Consensus size: 27 63977907 GGTATTTAGG * * 63977917 TCATTTGATCACATAAGAGCAAAATCA 1 TCATTTTATCACATAAGGGCAAAATCA * 63977944 TCATTTTATCACATAAGGGCAAAATCG 1 TCATTTTATCACATAAGGGCAAAATCA 63977971 TCATTTTATCACATAAGGGCAAAATCA 1 TCATTTTATCACATAAGGGCAAAATCA * 63977998 TCATTTTATCACATAAGGGTAAAATCA 1 TCATTTTATCACATAAGGGCAAAATCA * * * 63978025 TTATTTTATTACATAAGGGTAAAAT 1 TCATTTTATCACATAAGGGCAAAAT 63978050 TGTAACGCCC Statistics Matches: 99, Mismatches: 7, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 27 99 1.00 ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32 Consensus pattern (27 bp): TCATTTTATCACATAAGGGCAAAATCA Found at i:63979622 original size:28 final size:28 Alignment explanation
Indices: 63979589--63979709 Score: 134 Period size: 28 Copynumber: 4.3 Consensus size: 28 63979579 ATCGCATGAC * * 63979589 TATGAATCTGATTGGGCCTAACGGGCCA 1 TATGAATGTGATTGGGCCTAATGGGCCA * * 63979617 TATGAAAGTGATTGGGCCTGATGGGCCA 1 TATGAATGTGATTGGGCCTAATGGGCCA * * * 63979645 TATAAATGTAATTGGGCCTGATGGGCCA 1 TATGAATGTGATTGGGCCTAATGGGCCA * * * 63979673 TATGAATGAGGTTGGGCCTAAAGAGGCCA 1 TATGAATGTGATTGGGCCTAATG-GGCCA * 63979702 AATGAATG 1 TATGAATG 63979710 AGTATGGATC Statistics Matches: 78, Mismatches: 14, Indels: 1 0.84 0.15 0.01 Matches are distributed among these distances: 28 66 0.85 29 12 0.15 ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25 Consensus pattern (28 bp): TATGAATGTGATTGGGCCTAATGGGCCA Found at i:63982586 original size:23 final size:24 Alignment explanation
Indices: 63982559--63982615 Score: 73 Period size: 23 Copynumber: 2.4 Consensus size: 24 63982549 GCTGATGGAC * 63982559 AGTAAGCTCT-ATTAAGTTGA-AAT 1 AGTAAGCTCTGA-TAAGCTGAGAAT * 63982582 TGTAAGCTCTGATAAGCTGAGAAT 1 AGTAAGCTCTGATAAGCTGAGAAT 63982606 AGTAAGCTCT 1 AGTAAGCTCT 63982616 TACGAGCTGA Statistics Matches: 29, Mismatches: 3, Indels: 3 0.83 0.09 0.09 Matches are distributed among these distances: 23 16 0.55 24 13 0.45 ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32 Consensus pattern (24 bp): AGTAAGCTCTGATAAGCTGAGAAT Found at i:63986835 original size:28 final size:29 Alignment explanation
Indices: 63986768--63986868 Score: 134 Period size: 28 Copynumber: 3.5 Consensus size: 29 63986758 ATAGTGAATC * 63986768 CGCACACTTAGTGCTATATATATTC-AGCT 1 CGCACACTTAGTGCTATATA-ATTCAAACT 63986797 CGCACACTTAGTGCTATATAA-TCAAACT 1 CGCACACTTAGTGCTATATAATTCAAACT * * * 63986825 CGCACACTTAGTGCTGTATAATTTTAAACC 1 CGCACACTTAGTGCTATATAA-TTCAAACT 63986855 CGCACACTTAGTGC 1 CGCACACTTAGTGC 63986869 CAATCTTGTC Statistics Matches: 65, Mismatches: 4, Indels: 5 0.88 0.05 0.07 Matches are distributed among these distances: 27 2 0.03 28 24 0.37 29 20 0.31 30 19 0.29 ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31 Consensus pattern (29 bp): CGCACACTTAGTGCTATATAATTCAAACT Found at i:63994662 original size:28 final size:29 Alignment explanation
Indices: 63994595--63994695 Score: 125 Period size: 28 Copynumber: 3.5 Consensus size: 29 63994585 ATAGTGAATC * 63994595 CGCACACTTAGTGCTATATATATTC-AGCT 1 CGCACACTTAGTGCTATATA-ATTCAAACT 63994624 CGCACACTTAGTGCTATATAA-TCAAACT 1 CGCACACTTAGTGCTATATAATTCAAACT * * * * 63994652 CGCACACTTAGTGCTGTACAATTTTAAACC 1 CGCACACTTAGTGCTATATAA-TTCAAACT 63994682 CGCACACTTAGTGC 1 CGCACACTTAGTGC 63994696 CAATCTTGTC Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 2 0.03 28 23 0.36 29 20 0.31 30 19 0.30 ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30 Consensus pattern (29 bp): CGCACACTTAGTGCTATATAATTCAAACT Found at i:64003005 original size:29 final size:29 Alignment explanation
Indices: 64002942--64003040 Score: 96 Period size: 29 Copynumber: 3.4 Consensus size: 29 64002932 TCATCGACAA * 64002942 ATGAAAAGGGATAGC-TTCAGCTATCCAA-T 1 ATGAAAAGGGATAGCTTTGA-CTAT-CAATT * * 64002971 ACGAAAAGGGATAGCTTTGACTATCGATT 1 ATGAAAAGGGATAGCTTTGACTATCAATT * * 64003000 ATGAAAAGGGAT-GGTAATGACTATCAAATT 1 ATGAAAAGGGATAGCT-TTGACTATC-AATT 64003030 ATGAAAAGGGA 1 ATGAAAAGGGA 64003041 CGTGCCAACC Statistics Matches: 59, Mismatches: 7, Indels: 7 0.81 0.10 0.10 Matches are distributed among these distances: 28 4 0.07 29 38 0.64 30 17 0.29 ACGTcount: A:0.40, C:0.11, G:0.24, T:0.24 Consensus pattern (29 bp): ATGAAAAGGGATAGCTTTGACTATCAATT Found at i:64010657 original size:687 final size:691 Alignment explanation
Indices: 64008087--64011942 Score: 3776 Period size: 690 Copynumber: 5.5 Consensus size: 691 64008077 ACATTGCAGG * * * ** * * 64008087 TAGTTAGTGTTTCCGGTGTGGACGGTGCAAAATTCCAATGGAGTGATCCAATTTAGGCTTAGTGT 1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATT-C-A-GAAGTGATCCAAGTTAGGCTTAGTGT * * * * 64008152 TTGAGTAGGTGATGTTATTGCTATTATTTTTGAACTATGGGAATAAGACAATGTGGTAGAATTGT 63 TCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGT * * * * 64008217 TGGTTGATTATT-ATCATGATGTTTTAAATGATTATTTTGATTTTAATATTTTTAGGTTCGTGAA 128 TGGTTGATTATTAAT-ATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGA * * ** * * * * 64008281 CGTTGTTATTTGTTTCTTGGTTTGCTCAGTTGAAATTATTGATAATGCTATGGACTGCAAATATG 192 CGTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTAAATATG * * * * 64008346 GACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTG 257 AACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTG * * ** * * 64008411 GAATGCCATGTTTTATTGGAATTTTTGCAGAATTATACGTAGGTATCGATAATCAGGGTATAGGT 322 GAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATAC--A---A--G------A-GG--TA--T * ** * * * * 64008476 ATCGATACTTATGAGTTGAAACAAATGTGTAGGAAACAGTAGTTCATTTTCGTATCGATACCAGT 369 -T-GATACTTCTGAGTTGAAATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAAT * * * * 64008541 TCTCGAGAATCGATACTCGGGGTAAAAATATAGATTCTTTTAAATTGTATCAATAAATTGCTGAG 432 TCTCGAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGG * * * * ** * *** * 64008606 TTTTGGATTTTGAACAAAGA--AGAATTTTAAAAAGGCACCAATTTTTCAAATAATATCGATACC 497 TTTTGGATTTTGAAGAAA-ATCATAATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCC * * * * * 64008669 AATTTTG-GAATATATCA-ATACCCATTTCGATGTTCTTATTT-AATGTATGATATCATGTTTAT 561 CATTTTGAGAA-ATAT-AGATTCCCATTTAGATGTTCTCATTTCAATATATGATATCA-GTTTAT * * * * * * * 64008731 CGG-TAGCTTTTTCCTGATAATTCACTGAGCTTTTTTAACCTCACACACTCTTTTCTACACCTTT 623 TGGTTAGTTTTTTCCCGATCATTCACTGAG-ATTTTTAACCTCACACACTTTTTTCTAAACCTTT * * 64008795 CCAAA 687 ACAGA * * * ** 64008800 TAGTGAGTG-TTTCCTGTGTGGGCGGTGCGGAATTCAAAGGAAGTAAAACAAGTTAGGCTTAGTG 1 TAGTTAGTGTTTTCGT-TGTGGGCGGTGCGGAATTC--A-GAAGTGATCCAAGTTAGGCTTAGTG * * * * * * * * 64008864 TTCAAGTAAGTGAT-TTAGTGCTACTATTTTTAAATTGTGGGACA-AAGACAATGTCGTAGAATT 62 TTCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGA-ATAAGACAATATGGTAGAATT * * * * * * 64008927 GTTGGTTTATT-TTTATCAAGATGTTTTCAATGATTATTTTGATTTTAATACTCTTATGTTCATG 126 GTTGGTTGATTATTAAT-ATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTG * * 64008991 GACGTTGTTATTAGTTTATTGGTTTTTG-TTGGATGAAATTATTGATATTACTATAGACT-TCTA 190 GACGTTGTTATTAGTTTATTGG--TTTGCTTGGATGAAATTATTGATATTACTATGGACTGT-AA * * * * * 64009054 ATATCAACATTTTGATGTTTAATATTGAAGTTATGGATGCATGTCGACGGGGTATGTGATTGAGT 252 ATATGAACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGT * * * * 64009119 ATGTGGAATGCCCTGTTTTGTTGGAATTTTTGAAGAATTA-CCAAGAGGTATCGATAATCATGAC 317 ATGTGGAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGA-G----G-T-AT--TG-- * * * * * * 64009183 ATATGTATCAATACTACTCAGTTGAAATGAATGTGTAGAAAATAGTAGCACATTTTGGTACCGAT 371 --A--TA-C--T--T-CTGAGTTGAAATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGAT * * * * * * * * 64009248 ACCAGTTATCGAGTATCAATACTCGGGGTAAAAATTTTGAAACTTTTGAATTGTAACGATAAATT 426 ACCAATTCTCGAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATT ** * * * ** 64009313 ATTGGGTTTTGGATTTTAAATAAAATCATAATGTTAAAAGGGTA-TCGATTTTCCAAATAGTATC 491 GCTGGGTTTTGGATTTTGAAGAAAATCATAATGTTAAAAAGGTACT-GATTTTCCAAACGGTATC ** * * 64009377 GATTCCCATTTTGAGAAATATCTATTCCAATTTAAATG---T--TTTC-AT-T-T--TAT--GTT 555 GATTCCCATTTTGAGAAATATAGATTCCCATTTAGATGTTCTCATTTCAATATATGATATCAGTT * * * ** * * * * * 64009430 CACT-GATAGTTTTTTCTGGATCATTCACTGAGATTTTTCAGCTCACTCACTCTTTTCTGAACCT 620 TATTGGTTAGTTTTTTCCCGATCATTCACTGAGATTTTTAACCTCACACACTTTTTTCTAAACCT ** 64009494 TTGTAGA 685 TTACAGA * * * * * *** 64009501 TAGTTAGTGTTTTCATTGTGGACAGTGCGGAATTCAAAGGAATTGATCCATGTTAGGCTTAAAAT 1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTC--A-GAAGTGATCCAAGTTAGGCTTAGTGT * * * * * * * 64009566 TCGATTAAGTGATATTATTACTATTATTTTTGAACTATAGAAATAAGGCAATATGGTAGAATTGT 63 TCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGT ** 64009631 TGGTTGATTATTACCATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAC 128 TGGTTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAC 64009696 GTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACT-TATAATATG 193 GTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTA-AATATG * * ** 64009760 AACATTCTGATGTTTAATATTGAAGCTATGGATGCATGTTTAAGTGGTATGTGATTGAGTATGAA 257 AACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTG * * 64009825 GAAAGCCCTATTTTGCTGGAATTATTGAAGAATTAT-CAA-AGGTATCGATACTTCTGAGTTGAA 322 GAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATACTTCTGAGTTGAA * * * * 64009888 ATAAATGTACAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCTAGTATCAATACTCGG 387 ATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATCGATACTCGG * * 64009953 GGTAAAAATATAGATGCTTTTGAGTTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAAT 452 GGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAAT * * ** * 64010018 TATAGTGTTAAAAACATACTGATTTTCCAAACGGTATCGATTCCCATTATGAGAAATATAGATTC 517 CATAATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCCCATTTTGAGAAATATAGATTC * 64010083 CCATTTAGATGTTCTCATTTCAATATATGATATCAAGTTTATTGGTTATTTTTTTCCCGATCATT 582 CCATTTAGATGTTCTCATTTCAATATATGATATC-AGTTTATTGGTTAGTTTTTTCCCGATCATT * * 64010148 CACTGAGATTTTTAACCTCACACATTTTTTTCTAAACCTTTACAAA 646 CACTGAGATTTTTAACCTCACACACTTTTTTCTAAACCTTTACAGA * 64010194 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGAAATTC-G-A-TGATCCAAGTTAGGCTTAGTGTTCG 1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTCAGAAGTGATCCAAGTTAGGCTTAGTGTTCG * * 64010256 AGTAGGTGATACTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTATAATTGTTGG 66 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGTTGG * * 64010321 TTGATTATTAATACGATGTTTTAAATGATTATTTTGA-TTTAATACTCTTAGGTTCCTAGACGTT 131 TTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGACGTT 64010385 GTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACT-TATAATATGAAC 196 GTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTA-AATATGAAC * 64010449 ATTTTAATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAA 260 ATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAA 64010514 AGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAA-AGGTATTGATACTTCTGAGTTGAAATG 325 AGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATACTTCTGAGTTGAAATG * * 64010578 AATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATTGATACTCGAGGT 390 AATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATCGATACTCGGGGT * * 64010643 AAAAATATAGATGCTTTTGAGTTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAATCAT 455 AAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAATCAT * * 64010708 AGTGTTAAAAACGTA-TCGATTTTCCTAAA-GGTATCGATTCCCATTTTGAGAAATATAGATTCC 520 AATGTTAAAAAGGTACT-GATTTTCC-AAACGGTATCGATTCCCATTTTGAGAAATATAGATTCC * * * 64010771 CATTTAAATGTTCTCATTTTAATATATGATATCAAGTTTATTGGTTA-TTTTTTCCCAATCATTC 583 CATTTAGATGTTCTCATTTCAATATATGATATC-AGTTTATTGGTTAGTTTTTTCCCGATCATTC 64010835 ACTGAGATTTTT-ACCTCACACA-TTTTTTCTAAACCTTTACAGA 647 ACTGAGATTTTTAACCTCACACACTTTTTTCTAAACCTTTACAGA * * * * 64010878 TAGTTAGTGTTTCCGTTGTGGGTGGTGCGAAATTCAATGGAATTGATCCAAGTTAGGCTTAGTGT 1 TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTC-A--GAAGTGATCCAAGTTAGGCTTAGTGT * * 64010943 TCGAGTAGGTGATATTATTGTTATTATTTTTGAACTGTGGGAATAAGACAATATGGTATAATTGT 63 TCGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGT * 64011008 TGGTTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAT 128 TGGTTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGAC * * * * * 64011073 GTTGTTATTAGTTTATTGGTTTGCATGGGA-AAAATTATTTATATTTCTATGGACTGCAAATATG 193 GTTGTTATTAGTTTATTGGTTTGC-TTGGATGAAATTATTGATATTACTATGGACTGTAAATATG * * * * * 64011137 GACATTTTGATGTTTAATATTGAAGCTATTGATGCTTGTTGAAGTGGTATGCGATTGAGTATTTG 257 AACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTG * * * * * 64011202 GAAAGCCATGTTTTGCTAGAATTTACAGTGTTATACAGAGGTATCGATAATCACAGCATATGTAT 322 GAAAGCCCTGTTTTGCTGGAA-TT--A---TT-GA-AGA---AT---T-AT-ACA--AGAGGTAT * * * ** ** * * 64011267 CGATACATT-TAAGTTGAAACGAATGTGCAAAAAACAAAAGCTCATTTTGGTATCGATATCACTT 369 TGATAC-TTCTGAGTTGAAATGAATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATT * * ** * 64011331 CTCGAGTATCGATACTCGGGGTAAAAATAAAGATACTTTTGCATTGTATTGATAAATTGTTGGGT 433 CTCGAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGT * * * * * * 64011396 TTTGGATTTTGAAGAAAAGCGTAATGTTAAAAAGGTACCGATTTTTCAAACGGTATTGATACCCA 498 TTTGGATTTTGAAGAAAATCATAATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCCCA * * * * 64011461 -ATT-AG----AT-G--TCCTCATTTAG-TG----GA---C--GATATCATATC----TATT-GT 563 TTTTGAGAAATATAGATTCC-CATTTAGATGTTCTCATTTCAATATATGATATCAGTTTATTGGT * * * * * 64011502 TAGTTTTTTCCCAATCATTCACTAAGCTTGTTTAAGCTCACACACTCTTTTT-TGAACCTTTGA- 627 TAGTTTTTTCCCGATCATTCACTGAGATT-TTTAACCTCACACACT-TTTTTCTAAACCTTT-AC 64011565 AGA 689 AGA * * * * * * 64011568 TAGTTAGTGTTTCTAG-TATAGGTGGTGCGGAATTCCAAAGAAGTGATCTAAGTTGGGCTTAGTG 1 TAGTTAGTGTTT-TCGTTGTGGGCGGTGCGGAATT-C--AGAAGTGATCCAAGTTAGGCTTAGTG ** * * 64011632 TTTAAGTAGGTGATATTA-TGTCTATTATTTTTGAACTGTGTGAATAAGACAATGTGGTAGAATT 62 TTCGAGTAGGTGATATTATTG-CTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATT * * * * * * 64011696 GTTGGTTGATTATT-ATCTTCATGATTTAAATAATTATATTT-ATTTTAATACTCTAAGGTTCGT 126 GTTGGTTGATTATTAAT-ATGATGTTTTAAATGATTAT-TTTGATTTTAATACTCTTAGGTTCCT * * * * * * * 64011759 GGACGTTGTTATCAGTTTATTGGTTTGCTTGGTTGCAATTAGTGATATTGCTATGGACTGGAATT 189 GGACGTTGTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTAAAT ** * * * * * 64011824 ATGGGCATTTTGATGTTGAATATTGATGTTATGGATGCATGTTGAAATGGTATGTGTTTGAGTAT 254 ATGAACATTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTAT * * ** * * * 64011889 GTGGAATGCCCTGTTTTTCCAGAATTTTTGCAGAATTATA-AAGAAGTATTGATA 319 GTGGAAAGCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATA 64011943 ATCACGGCAT Statistics Matches: 2686, Mismatches: 355, Indels: 246 0.82 0.11 0.07 Matches are distributed among these distances: 671 10 0.00 673 1 0.00 674 1 0.00 675 2 0.00 676 1 0.00 679 182 0.07 680 2 0.00 682 5 0.00 684 60 0.02 685 14 0.01 686 216 0.08 687 393 0.15 688 8 0.00 689 23 0.01 690 415 0.15 691 164 0.06 692 23 0.01 693 87 0.03 694 2 0.00 695 1 0.00 697 3 0.00 698 1 0.00 699 7 0.00 700 5 0.00 701 224 0.08 702 154 0.06 703 5 0.00 704 2 0.00 705 6 0.00 706 2 0.00 707 7 0.00 708 4 0.00 709 11 0.00 710 167 0.06 711 5 0.00 712 121 0.05 713 291 0.11 714 58 0.02 715 3 0.00 ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40 Consensus pattern (691 bp): TAGTTAGTGTTTTCGTTGTGGGCGGTGCGGAATTCAGAAGTGATCCAAGTTAGGCTTAGTGTTCG AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATATGGTAGAATTGTTGG TTGATTATTAATATGATGTTTTAAATGATTATTTTGATTTTAATACTCTTAGGTTCCTGGACGTT GTTATTAGTTTATTGGTTTGCTTGGATGAAATTATTGATATTACTATGGACTGTAAATATGAACA TTTTGATGTTTAATATTGAAGCTATGGATGCATGTTGAAGTGGTATGTGATTGAGTATGTGGAAA GCCCTGTTTTGCTGGAATTATTGAAGAATTATACAAGAGGTATTGATACTTCTGAGTTGAAATGA ATGTGCAGGAAACAGTAGCTCATTTTGGTATCGATACCAATTCTCGAGTATCGATACTCGGGGTA AAAATATAGATACTTTTGAATTGTATCAATAAATTGCTGGGTTTTGGATTTTGAAGAAAATCATA ATGTTAAAAAGGTACTGATTTTCCAAACGGTATCGATTCCCATTTTGAGAAATATAGATTCCCAT TTAGATGTTCTCATTTCAATATATGATATCAGTTTATTGGTTAGTTTTTTCCCGATCATTCACTG AGATTTTTAACCTCACACACTTTTTTCTAAACCTTTACAGA Found at i:64014146 original size:712 final size:711 Alignment explanation
Indices: 64012027--64014532 Score: 2913 Period size: 708 Copynumber: 3.5 Consensus size: 711 64012017 GTAGTTCTTG * * * 64012027 AGTATGTGATATTAGTGCTATTATTTTTGAATTGTGGGAATAAGACAATGTGGTAGAATTGTTGG 1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG * * * * * * 64012092 CTGATTATCATTATGACGTTTTAAATTATTATTTTGATTTTAATACTCTTAGGTTTC-TGGACGA 66 TTGATTATTATCATGATGTTTTAAATGATTATTTT-ATTTTAATACTCTTAGG-TTCGTGGACGT * * 64012156 TATTATTAGTTTATTGGTTTGCTTGGTAGAAATTATTTATATTGTTATGGACTGCAAATATGGGC 129 TATTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGAC * * * * * 64012221 ATTTTGTTGTTTACTATTGAAGTTATGGATGCATGTTGAAGT-GTCTGTGATTGAGA-ATGTGCA 194 ATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGA-ATATGTGGA * * * * * 64012284 ATGCCCTGTGTTGCTGGAATATTT-ATAGAATTTTATAGAGGTATCGATAA-CGACGGCATATGT 258 ATG-CCTATTTTGCTGGAATTTTTGA-AGAATTATACAGAGGTATCGATAATC-ACGGCATATGT ** * * 64012347 ATTGATACTTCTAAGTTGAAACGAATGC-GTAGGAGA-TAGTAGCTCATCTT-GTAATTGATAGC 320 ATCAATACTTCTAAGTTGAAACGAAT-CTGTAGGAGACTAGTAGCTCATTTTGGT-ATCGATA-C * * * * * * * * 64012409 -AGTTCTCGAGTACCGATACTCGGGGTAAAAACATAGATA-ATTTAAATTGTATCAACAAAATCT 382 TAGTTCTCAAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAAATAT * * * * * * 64012472 AGGGGTTTTGGATTTTT-AAAAAAAGC-GAAAAGTTAAAAAGGTACTGAGTTTTCAAAAGGTATC 447 -GGGGTTTTGG-TTTTTGAAGAAAATCAG-AATGTAAAAAAGGTTCCGA-TTTTCAAAAGGTATC * * * * * * 64012535 GATACTCATTTTGAGAAATATCGATACCCAATTAGATGTTCTCATTTAATGGATTATATGATGTC 508 GATACTCATTTTGAGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTT * * * * * 64012600 TATTATTAGTTTTTTCCCGCTCATTCACGGAGCTTGTTTAAGCTCACACACTCTTTTCTGAACCT 573 TATTAGTAGTTTTTTCCTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCT * ** * * 64012665 TTGTAGATAGTTAGTGTTTCTTGTGTAGGCGGTGGGAAATTCCAAGGAAGTGATCCAAATTAGGC 638 TTGCAGATAGTTAGTGTTTCAGGTGTAGGCGGTCGG-AATTCCAAGGAAGTGATCCAAGTTAGGC * 64012730 TTAGTGTTTG 702 TTAGTGTTTC * * 64012740 AGTAGGTGATATTATTGCTATTATATTTGAACTATGGGAATAAGACAATGTGGTAGAATTGTTGG 1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG * * 64012805 TTGATTATTATCATGATATTTTAAATG---A-TTT-TTTTAGTACTCTTAGGTTCGTGGACGTTA 66 TTGATTATTATCATGATGTTTTAAATGATTATTTTATTTTAATACTCTTAGGTTCGTGGACGTTA * ** * 64012865 TTATTAGTTTATTGGTTTGCTTGTTTG-AATT-TTTGGATATTACTATGGACTGCAACTATGGAC 131 TTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTT--ATATTGTTATGGACTGCAAATATGGAC * * * * * 64012928 ATTTTGATGTTGAATACTGAAGTTATGGATGCATGTTGAAGTGGTATTTTATTGACTATGTGAAA 194 ATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAA * * * * 64012993 TACTCTATTTTGCTTGAGTTTTTGTAGAATTATACAGAGGTATCGATAATCACGGCATATGTATC 259 TGC-CTATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGGCATATGTATC * * * * * * * * * * 64013058 GATACTTCTGAA-ATGAAAAGAATGTATAAGA-AATAGTTGCTCATTTTGGTTTCGATTCTAGTT 323 AATACTTCT-AAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATACTAGTT 64013121 CTCAAGTATCGATACT-GGGGATAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGG 387 CTCAAGTATCGATACTCGGGG-TAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGG * ** * * * * 64013185 CTTTGGACTTTGAAGTAAATCATAATGATAAAAAAGGTGT-CGATTTTGC-AACGGTATTGATAC 451 TTTTGGTTTTTGAAGAAAATCAGAATG-TAAAAAAGGT-TCCGATTTT-CAAAAGGTATCGATAC * * * * * * 64013248 TCATTTTGAAAAATGTTGATTCTCATTTAGATGTTCTCATTTAATGTATGATATCATGTTCATTG 513 TCATTTTGAGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTA * 64013313 GTAGTTTTTTCCTGATCA-TCTACTAAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTTGC 578 GTAGTTTTTTCCTGATCATTC-ACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTTGC * * * * * 64013377 ACG-TACTTAGTGTTTCCGATGTTA-GCGGTGTGGAATTCCAAGGAAGTGATACAAGTTAGGCTT 642 A-GATAGTTAGTGTTTCAGGTG-TAGGCGGT-CGGAATTCCAAGGAAGTGATCCAAGTTAGGCTT * 64013440 AGTGTTTT 704 AGTGTTTC * 64013448 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTTG 1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG * * * * * 64013513 TTGATTATTATGATGATGTTTTAAATGATCATTTTGATTTTAATACACTTAGGTCCTTGGACGTT 66 TTGATTATTATCATGATGTTTTAAATGATTATTTT-ATTTTAATACTCTTAGGTTCGTGGACGTT * ** ** * * 64013578 GTTATTAGTTTATTTCTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTAAAAATATAGATA 130 ATTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGACA * * 64013643 TTTTGATGTTGAATATTGAAGCTATGGATGCATGTTGATGTGGTATGTGATTGAATATGTGGAAT 195 TTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAAT 64013708 GCCATATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGAG-ATATGTATC 260 GCC-TATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACG-GCATATGTATC * * * 64013772 AATACTTCTAAGTTG-AACGAATCTGCAGGAGACT-GTAGCTCATTTTGGTAGCGATACTGGTTC 323 AATACTTCTAAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATACTAGTTC * * * * * 64013835 TAAAGTATCGATACTCGGGGT-AAAATATAGATACTTTTGAATTGTATTGATAAATTGTTGGGTT 388 TCAAGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGGTT * * 64013899 TTGGTTTTTGAAGAAAATTAGAATGTAAAAAAGGTTCCGATTTTCCAAATGGTATCGATAC-CTA 453 TTGGTTTTTGAAGAAAATCAGAATGTAAAAAAGGTTCCGATTTT-CAAAAGGTATCGATACTC-A * * * 64013963 TTTTTAGAAATATC-AGTTCCCATTTCGATGTTCTCATTTAATGTATGATACCATGTTTATTAGT 516 TTTTGAGAAATATCGA-TTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTAGT * 64014027 AGTTTTTTCTTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAA-CTTTCGCAG 580 AGTTTTTTCCTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTT-GCAG * * * * 64014091 ATAGTTAGTGTTTAAGGTGTGGGCTGTACAGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG 644 ATAGTTAGTGTTTCAGGTGTAGGCGGT-CGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG 64014156 -TTC 708 TTTC * * * * 64014159 A-T--GT-A-ATGATT-CTATTATTTTTAAATTGTGGCACA-AAGACAATGTGGTAGAATTGTTG 1 AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGA-ATAAGACAATGTGGTAGAATTGTTG * * * 64014217 GTTCATTATTATCTTGATGTTTTAAATGATTATATTTATTTTAATACTCTTAGGTTCGTGGATGT 65 GTTGATTATTATCATGATGTTTTAAATGATTAT-TTTATTTTAATACTCTTAGGTTCGTGGACGT * * * * * 64014282 TGTTATTAGTTTATTGGTTTGCTTGTTTTAAATTATTTATATTGATATGGACTTCAAATATGGAC 129 TATTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGAC * ** * 64014347 ATTTTGATGTTGAATATTGAATTTATGGATGCATGTTGAAGTCATATGTGATTGAGTATGTGGAA 194 ATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAA * * * * 64014412 TGCCTTATTTTTCTGGAATTTTAGAAGAATTTTACAGAGGTATCGATAATCACGGCATATGTATT 259 TGCC-TATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGGCATATGTATC * * * * * * 64014477 AGTACTTTTGAGTTGAAACAAATGTGTAGGAGAC-AGTAGCTCATATT-GTATCGATA 323 AATACTTCTAAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATA 64014533 ACAATATGAT Statistics Matches: 1526, Mismatches: 217, Indels: 108 0.82 0.12 0.06 Matches are distributed among these distances: 704 1 0.00 705 290 0.19 706 42 0.03 707 122 0.08 708 420 0.28 709 44 0.03 710 3 0.00 711 30 0.02 712 232 0.15 713 135 0.09 714 199 0.13 715 5 0.00 716 3 0.00 ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40 Consensus pattern (711 bp): AGTAGGTGATATTATTGCTATTATTTTTGAACTGTGGGAATAAGACAATGTGGTAGAATTGTTGG TTGATTATTATCATGATGTTTTAAATGATTATTTTATTTTAATACTCTTAGGTTCGTGGACGTTA TTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATTGTTATGGACTGCAAATATGGACAT TTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTGAATATGTGGAATG CCTATTTTGCTGGAATTTTTGAAGAATTATACAGAGGTATCGATAATCACGGCATATGTATCAAT ACTTCTAAGTTGAAACGAATCTGTAGGAGACTAGTAGCTCATTTTGGTATCGATACTAGTTCTCA AGTATCGATACTCGGGGTAAAAATATAGATACTTTTGAATTGTATCGATAAAATATGGGGTTTTG GTTTTTGAAGAAAATCAGAATGTAAAAAAGGTTCCGATTTTCAAAAGGTATCGATACTCATTTTG AGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATCATGTTTATTAGTAGTTTT TTCCTGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTTTGAACCTTTGCAGATAGTTA GTGTTTCAGGTGTAGGCGGTCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTTC Found at i:64015305 original size:34 final size:34 Alignment explanation
Indices: 64015267--64015407 Score: 192 Period size: 34 Copynumber: 4.1 Consensus size: 34 64015257 AGTGACAGTC * * 64015267 CAGTATCAATGTGGGCCTTAGCTCATTACAGTAT 1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT ** * 64015301 CAGTATCAGTGTGGGCCTTAAACCATTACACTAT 1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT * * 64015335 CAGTATTAGTATGGGCCTTAGCCCATTACAGTAT 1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT * * * 64015369 CAGTATCAGGGTCGGCCTTAGCCCATTACAGTAA 1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT 64015403 CAGTA 1 CAGTA 64015408 ACAAAAGTGC Statistics Matches: 92, Mismatches: 15, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 34 92 1.00 ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29 Consensus pattern (34 bp): CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAT Found at i:64019941 original size:19 final size:19 Alignment explanation
Indices: 64019917--64019953 Score: 56 Period size: 19 Copynumber: 1.9 Consensus size: 19 64019907 GGATGAACAC 64019917 TTTTCTTCCTTTCTTTTTT 1 TTTTCTTCCTTTCTTTTTT * * 64019936 TTTTCTTTCTTTGTTTTT 1 TTTTCTTCCTTTCTTTTT 64019954 GTTTCTCTCA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 19 16 1.00 ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81 Consensus pattern (19 bp): TTTTCTTCCTTTCTTTTTT Found at i:64021198 original size:42 final size:41 Alignment explanation
Indices: 64021141--64021253 Score: 140 Period size: 40 Copynumber: 2.8 Consensus size: 41 64021131 GAATACTCAT * * * * 64021141 TCTCACACACAAAGTGCCAATACATAGTCGACGCTAAT-TCAA 1 TCTCGCACACTAAGTGCC-ATACATAGTCGAAGCT-ATCCCAA * 64021183 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCCCAA 1 TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCCCAA * 64021224 -ATCGCACACTAAGTGCCATACATAGTCGAA 1 TCTCGCACACTAAGTGCCATACATAGTCGAA 64021254 TTGTTGTTAA Statistics Matches: 63, Mismatches: 7, Indels: 4 0.85 0.09 0.05 Matches are distributed among these distances: 40 30 0.48 41 17 0.27 42 16 0.25 ACGTcount: A:0.35, C:0.30, G:0.14, T:0.20 Consensus pattern (41 bp): TCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCCCAA Found at i:64021530 original size:19 final size:19 Alignment explanation
Indices: 64021506--64021545 Score: 80 Period size: 19 Copynumber: 2.1 Consensus size: 19 64021496 ACATTAGGGA 64021506 TATTTTACACATTTGCCCC 1 TATTTTACACATTTGCCCC 64021525 TATTTTACACATTTGCCCC 1 TATTTTACACATTTGCCCC 64021544 TA 1 TA 64021546 AACTTTCACA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 21 1.00 ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42 Consensus pattern (19 bp): TATTTTACACATTTGCCCC Found at i:64021557 original size:20 final size:19 Alignment explanation
Indices: 64021509--64021558 Score: 66 Period size: 19 Copynumber: 2.6 Consensus size: 19 64021499 TTAGGGATAT * 64021509 TTTACACATTTGCCCCTAT 1 TTTACACATTTGCCCCTAC 64021528 TTTACACATTTGCCCCTAAAC 1 TTTACACATTTGCCCCT--AC 64021549 TTT-CACATTT 1 TTTACACATTT 64021559 TTTACAATTT Statistics Matches: 28, Mismatches: 1, Indels: 3 0.88 0.03 0.09 Matches are distributed among these distances: 19 17 0.61 20 7 0.25 21 4 0.14 ACGTcount: A:0.24, C:0.30, G:0.04, T:0.42 Consensus pattern (19 bp): TTTACACATTTGCCCCTAC Found at i:64023113 original size:19 final size:19 Alignment explanation
Indices: 64023089--64023130 Score: 66 Period size: 19 Copynumber: 2.2 Consensus size: 19 64023079 CATCTGTTTA * 64023089 AACAGTACTTCATCCATAT 1 AACAGTAATTCATCCATAT * 64023108 AACAGTAATTCATCCGTAT 1 AACAGTAATTCATCCATAT 64023127 AACA 1 AACA 64023131 CAGCTTTTTC Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 19 21 1.00 ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29 Consensus pattern (19 bp): AACAGTAATTCATCCATAT Found at i:64028644 original size:27 final size:27 Alignment explanation
Indices: 64028606--64028659 Score: 99 Period size: 27 Copynumber: 2.0 Consensus size: 27 64028596 AGTGACGGAG * 64028606 TATGAGCAAAAATTCATGAGATTCAGC 1 TATGAGCAAAAATTCATGAGACTCAGC 64028633 TATGAGCAAAAATTCATGAGACTCAGC 1 TATGAGCAAAAATTCATGAGACTCAGC 64028660 CAGTATGCCC Statistics Matches: 26, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 27 26 1.00 ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24 Consensus pattern (27 bp): TATGAGCAAAAATTCATGAGACTCAGC Found at i:64032719 original size:15 final size:15 Alignment explanation
Indices: 64032699--64032749 Score: 59 Period size: 15 Copynumber: 3.3 Consensus size: 15 64032689 ATTTAAAATA 64032699 AGTAATACCTATCTT 1 AGTAATACCTATCTT * 64032714 AGTAATACATAT-TAAT 1 AGTAATACCTATCT--T 64032730 AAGTAATACCTATCTT 1 -AGTAATACCTATCTT 64032746 AGTA 1 AGTA 64032750 GTACATATTA Statistics Matches: 30, Mismatches: 2, Indels: 8 0.75 0.05 0.20 Matches are distributed among these distances: 14 1 0.03 15 15 0.50 16 2 0.07 17 11 0.37 18 1 0.03 ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37 Consensus pattern (15 bp): AGTAATACCTATCTT Found at i:64032731 original size:32 final size:32 Alignment explanation
Indices: 64032695--64032760 Score: 123 Period size: 32 Copynumber: 2.1 Consensus size: 32 64032685 CAACATTTAA 64032695 AATAAGTAATACCTATCTTAGTAATACATATT 1 AATAAGTAATACCTATCTTAGTAATACATATT * 64032727 AATAAGTAATACCTATCTTAGTAGTACATATT 1 AATAAGTAATACCTATCTTAGTAATACATATT 64032759 AA 1 AA 64032761 AACCATCAAA Statistics Matches: 33, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 33 1.00 ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36 Consensus pattern (32 bp): AATAAGTAATACCTATCTTAGTAATACATATT Found at i:64033259 original size:27 final size:27 Alignment explanation
Indices: 64033229--64033369 Score: 191 Period size: 27 Copynumber: 5.2 Consensus size: 27 64033219 GTGACGAAGT 64033229 CACCAGATACAGATATTGTGGCAGAGC 1 CACCAGATACAGATATTGTGGCAGAGC 64033256 CACCAGA-ACAGATATATGTGGCAGAGC 1 CACCAGATACAGATAT-TGTGGCAGAGC * * 64033283 CACCAGAT-CAGATAATCGTGGCATAGC 1 CACCAGATACAGAT-ATTGTGGCAGAGC 64033310 CACCAGA-ACAGATATATGTGGCAGAGC 1 CACCAGATACAGATAT-TGTGGCAGAGC * 64033337 CACCAGAT-CAGATAATTGTGGCATAGC 1 CACCAGATACAGAT-ATTGTGGCAGAGC 64033364 CACCAG 1 CACCAG 64033370 GACGCTTCCT Statistics Matches: 102, Mismatches: 5, Indels: 14 0.84 0.04 0.12 Matches are distributed among these distances: 26 10 0.10 27 88 0.86 28 4 0.04 ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17 Consensus pattern (27 bp): CACCAGATACAGATATTGTGGCAGAGC Found at i:64033311 original size:54 final size:54 Alignment explanation
Indices: 64033229--64033369 Score: 248 Period size: 54 Copynumber: 2.6 Consensus size: 54 64033219 GTGACGAAGT * 64033229 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC 1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC * 64033283 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC 1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC 64033337 CACCAGATCAGATAATTGTGGCATAGCCACCAG 1 CACCAGATCAGATAATTGTGGCATAGCCACCAG 64033370 GACGCTTCCT Statistics Matches: 83, Mismatches: 3, Indels: 2 0.94 0.03 0.02 Matches are distributed among these distances: 53 5 0.06 54 78 0.94 ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17 Consensus pattern (54 bp): CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC Found at i:64035022 original size:26 final size:26 Alignment explanation
Indices: 64034991--64035072 Score: 137 Period size: 26 Copynumber: 3.2 Consensus size: 26 64034981 TGAAATGCCC 64034991 ATCATGGAACATTTACCTAAACCATT 1 ATCATGGAACATTTACCTAAACCATT * * 64035017 ATCATGGAATATTTACCTAATCCATT 1 ATCATGGAACATTTACCTAAACCATT * 64035043 ATCATGGAACATTTACCTAACCCATT 1 ATCATGGAACATTTACCTAAACCATT 64035069 ATCA 1 ATCA 64035073 ATTTGTACCA Statistics Matches: 52, Mismatches: 4, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 26 52 1.00 ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33 Consensus pattern (26 bp): ATCATGGAACATTTACCTAAACCATT Found at i:64036852 original size:13 final size:13 Alignment explanation
Indices: 64036834--64036866 Score: 50 Period size: 13 Copynumber: 2.6 Consensus size: 13 64036824 GTTTGTTTAT 64036834 TAAACTAATTAAC 1 TAAACTAATTAAC * 64036847 TAAACTAATTGAC 1 TAAACTAATTAAC 64036860 T-AACTAA 1 TAAACTAA 64036867 ACTAAAGCAA Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 12 6 0.32 13 13 0.68 ACGTcount: A:0.52, C:0.15, G:0.03, T:0.30 Consensus pattern (13 bp): TAAACTAATTAAC Found at i:64043485 original size:38 final size:39 Alignment explanation
Indices: 64043396--64043512 Score: 173 Period size: 38 Copynumber: 3.0 Consensus size: 39 64043386 TGAAAACAAG * * 64043396 TATTAAAGATGTTCAAACTATGACATAATTTAAAGACCCA 1 TATTAATGATGTTCAAACTATGACATAA-TTAAAGACTCA * * 64043436 TATTAATGATGTTCAGATTATGACATAATTAAA-ACTCA 1 TATTAATGATGTTCAAACTATGACATAATTAAAGACTCA * 64043474 TATTAATGATGTTCAAACTAAGACATAATTAAAGACTCA 1 TATTAATGATGTTCAAACTATGACATAATTAAAGACTCA 64043513 AACTAAAAAA Statistics Matches: 69, Mismatches: 7, Indels: 3 0.87 0.09 0.04 Matches are distributed among these distances: 38 34 0.49 39 10 0.14 40 25 0.36 ACGTcount: A:0.44, C:0.13, G:0.10, T:0.32 Consensus pattern (39 bp): TATTAATGATGTTCAAACTATGACATAATTAAAGACTCA Found at i:64049294 original size:31 final size:31 Alignment explanation
Indices: 64049256--64049319 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 64049246 CCTTTTCATA * 64049256 TTTCATATTTCATAACACTGGGCTGAAGCCT 1 TTTCATATTTCATAACACTGGGCCGAAGCCT ** 64049287 TTTCATATTTCATATTACTGGGCCGAAGCCT 1 TTTCATATTTCATAACACTGGGCCGAAGCCT 64049318 TT 1 TT 64049320 ACTGTAAGCG Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 31 30 1.00 ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39 Consensus pattern (31 bp): TTTCATATTTCATAACACTGGGCCGAAGCCT Found at i:64049604 original size:24 final size:24 Alignment explanation
Indices: 64049531--64049654 Score: 207 Period size: 23 Copynumber: 5.2 Consensus size: 24 64049521 GGCCTAGTCT 64049531 CTTTTAATAACTGGGGCA-AAGCC 1 CTTTTAATAACTGGGGCATAAGCC 64049554 CTTTTAATAACTGGGGCA-AAGCC 1 CTTTTAATAACTGGGGCATAAGCC 64049577 CTTTTAATAACTGGGGCATAAGCC 1 CTTTTAATAACTGGGGCATAAGCC 64049601 CTTTTAATAACTGGGGCATAAGCC 1 CTTTTAATAACTGGGGCATAAGCC * * 64049625 CTTTATCATAGCTGGGGCATAAGCC 1 CTTT-TAATAACTGGGGCATAAGCC 64049650 CTTTT 1 CTTTT 64049655 GCACTTCCTC Statistics Matches: 97, Mismatches: 2, Indels: 3 0.95 0.02 0.03 Matches are distributed among these distances: 23 41 0.42 24 34 0.35 25 22 0.23 ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30 Consensus pattern (24 bp): CTTTTAATAACTGGGGCATAAGCC Found at i:64049613 original size:47 final size:48 Alignment explanation
Indices: 64049531--64049654 Score: 207 Period size: 47 Copynumber: 2.6 Consensus size: 48 64049521 GGCCTAGTCT 64049531 CTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCA-AAGCC 1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC 64049577 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC 1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC * * 64049625 CTTTATCATAGCTGGGGCATAAGCCCTTTT 1 CTTT-TAATAACTGGGGCATAAGCCCTTTT 64049655 GCACTTCCTC Statistics Matches: 73, Mismatches: 2, Indels: 3 0.94 0.03 0.04 Matches are distributed among these distances: 46 18 0.25 47 23 0.32 48 9 0.12 49 23 0.32 ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30 Consensus pattern (48 bp): CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC Found at i:64049726 original size:9 final size:9 Alignment explanation
Indices: 64049712--64049768 Score: 51 Period size: 9 Copynumber: 5.9 Consensus size: 9 64049702 ACATCATGTG 64049712 CATATCATA 1 CATATCATA * 64049721 CATATCATGTG 1 CATATCA--TA 64049732 CATATCATA 1 CATATCATA * * 64049741 CATGTCATGTG 1 CATATCA--TA 64049752 CATATCATA 1 CATATCATA 64049761 CATATCAT 1 CATATCAT 64049769 GTTTATCAAA Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 9 23 0.61 11 15 0.39 ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35 Consensus pattern (9 bp): CATATCATA Found at i:64049729 original size:20 final size:20 Alignment explanation
Indices: 64049704--64049770 Score: 125 Period size: 20 Copynumber: 3.4 Consensus size: 20 64049694 TTATGAATAC 64049704 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 64049724 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT * 64049744 GTCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 64049764 ATCATGT 1 ATCATGT 64049771 TTATCAAAAT Statistics Matches: 45, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 20 45 1.00 ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:64049735 original size:11 final size:11 Alignment explanation
Indices: 64049704--64049759 Score: 57 Period size: 11 Copynumber: 5.5 Consensus size: 11 64049694 TTATGAATAC 64049704 ATCATGTGCAT 1 ATCATGTGCAT * 64049715 ATCA--TACAT 1 ATCATGTGCAT 64049724 ATCATGTGCAT 1 ATCATGTGCAT * 64049735 ATCA--TACAT 1 ATCATGTGCAT * 64049744 GTCATGTGCAT 1 ATCATGTGCAT 64049755 ATCAT 1 ATCAT 64049760 ACATATCATG Statistics Matches: 35, Mismatches: 6, Indels: 8 0.71 0.12 0.16 Matches are distributed among these distances: 9 15 0.43 11 20 0.57 ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36 Consensus pattern (11 bp): ATCATGTGCAT Found at i:64051435 original size:29 final size:29 Alignment explanation
Indices: 64051402--64051466 Score: 121 Period size: 29 Copynumber: 2.2 Consensus size: 29 64051392 GTGACGAGAT 64051402 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA 64051431 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA * 64051460 CGGCACT 1 TGGCACT 64051467 GGGTGTGCGA Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 29 35 1.00 ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26 Consensus pattern (29 bp): TGGCACTAAGTGTGCATGCTGGAAATATA Found at i:64059233 original size:29 final size:29 Alignment explanation
Indices: 64059200--64059264 Score: 121 Period size: 29 Copynumber: 2.2 Consensus size: 29 64059190 GTGACGAGAT 64059200 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA 64059229 TGGCACTAAGTGTGCATGCTGGAAATATA 1 TGGCACTAAGTGTGCATGCTGGAAATATA * 64059258 CGGCACT 1 TGGCACT 64059265 GGGTGTGCGA Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 29 35 1.00 ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26 Consensus pattern (29 bp): TGGCACTAAGTGTGCATGCTGGAAATATA Found at i:64062850 original size:27 final size:27 Alignment explanation
Indices: 64062820--64062901 Score: 78 Period size: 27 Copynumber: 3.0 Consensus size: 27 64062810 ATGCAAAAGC * 64062820 ATATAGTGAGTCCGCACACTTAGTGCT 1 ATATAGTAAGTCCGCACACTTAGTGCT * 64062847 ATAT-GATCAG-CTCGCACACTTAGTGCT 1 ATATAG-TAAGTC-CGCACACTTAGTGCT * * * 64062874 ATATAATCAAATTCGCACACTTAGTGCT 1 ATATAGT-AAGTCCGCACACTTAGTGCT 64062902 GTACAAATTT Statistics Matches: 45, Mismatches: 5, Indels: 9 0.76 0.08 0.15 Matches are distributed among these distances: 26 2 0.04 27 27 0.60 28 16 0.36 ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30 Consensus pattern (27 bp): ATATAGTAAGTCCGCACACTTAGTGCT Found at i:64062898 original size:28 final size:27 Alignment explanation
Indices: 64062832--64062901 Score: 104 Period size: 27 Copynumber: 2.6 Consensus size: 27 64062822 ATAGTGAGTC * * 64062832 CGCACACTTAGTGCTATATGATCAGCT 1 CGCACACTTAGTGCTATATAATCAACT * 64062859 CGCACACTTAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATATAATC-AACT 64062887 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 64062902 GTACAAATTT Statistics Matches: 39, Mismatches: 3, Indels: 1 0.91 0.07 0.02 Matches are distributed among these distances: 27 22 0.56 28 17 0.44 ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:64067491 original size:17 final size:17 Alignment explanation
Indices: 64067455--64067493 Score: 53 Period size: 17 Copynumber: 2.3 Consensus size: 17 64067445 CATCTTAAAT * 64067455 TATTATAATCAAACATA 1 TATTATAATCAAACAAA 64067472 TATTA-AATCAAACCAAA 1 TATTATAATCAAA-CAAA 64067489 TATTA 1 TATTA 64067494 CAGGTTACAC Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 16 7 0.35 17 13 0.65 ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33 Consensus pattern (17 bp): TATTATAATCAAACAAA Found at i:64069561 original size:24 final size:24 Alignment explanation
Indices: 64069529--64069576 Score: 96 Period size: 24 Copynumber: 2.0 Consensus size: 24 64069519 AATAACATTT 64069529 ATATCATTGATTCAAGCATCTAAC 1 ATATCATTGATTCAAGCATCTAAC 64069553 ATATCATTGATTCAAGCATCTAAC 1 ATATCATTGATTCAAGCATCTAAC 64069577 TTACCATAAT Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 24 1.00 ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33 Consensus pattern (24 bp): ATATCATTGATTCAAGCATCTAAC Found at i:64069590 original size:24 final size:24 Alignment explanation
Indices: 64069533--64069587 Score: 67 Period size: 24 Copynumber: 2.3 Consensus size: 24 64069523 ACATTTATAT * * 64069533 CATTGATTCAAGCATCTAACATAT 1 CATTAATTCAAGCATCTAACATAC * * 64069557 CATTGATTCAAGCATCTAACTTAC 1 CATTAATTCAAGCATCTAACATAC 64069581 CA-TAATT 1 CATTAATT 64069588 TCACAACTTA Statistics Matches: 28, Mismatches: 3, Indels: 1 0.88 0.09 0.03 Matches are distributed among these distances: 23 4 0.14 24 24 0.86 ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35 Consensus pattern (24 bp): CATTAATTCAAGCATCTAACATAC Found at i:64069824 original size:56 final size:56 Alignment explanation
Indices: 64069764--64069916 Score: 236 Period size: 56 Copynumber: 2.7 Consensus size: 56 64069754 TCCCAGACAG * 64069764 GGTCTTACTCGCACACATATAT-GAGAGTCACATATCGATGCCAACGTACTAAACGT 1 GGTCTTACTCGCACACATATATCG-GAGTCACATATCGATGCCAACGTACTAAACAT * * * 64069820 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAATGTATTAAACAT 1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT * * 64069876 GGTCTTACTCGTATACATATATCGGAGTCACATATCGATGC 1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGC 64069917 TGTGGTCTTA Statistics Matches: 89, Mismatches: 7, Indels: 2 0.91 0.07 0.02 Matches are distributed among these distances: 56 88 0.99 57 1 0.01 ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28 Consensus pattern (56 bp): GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT Found at i:64072518 original size:39 final size:39 Alignment explanation
Indices: 64072463--64072625 Score: 272 Period size: 39 Copynumber: 4.2 Consensus size: 39 64072453 TGTGTATAAA * * 64072463 TGTGCGAGTTGTGATATGCGGGTTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * 64072502 TGTGCGAGTTGCGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 64072541 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * 64072580 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT 64072620 TGTGCG 1 TGTGCG 64072626 GGCTACCATA Statistics Matches: 117, Mismatches: 6, Indels: 1 0.94 0.05 0.01 Matches are distributed among these distances: 39 100 0.85 40 17 0.15 ACGTcount: A:0.21, C:0.19, G:0.34, T:0.25 Consensus pattern (39 bp): TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:64076413 original size:79 final size:77 Alignment explanation
Indices: 64076256--64076473 Score: 201 Period size: 79 Copynumber: 2.7 Consensus size: 77 64076246 GAATCACGTA * * * * 64076256 CCTTCGGAAT-TTAACCGGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGCCCGGTTATAG 1 CCTTCGG-ATCTTAACCGGATATAG-TACTCGTACAAATGCCTTC-GGGCTTAGCCCGGATATAG * * 64076320 TAACTCGCATAAATG 63 TAAATCGCACAAATG * * 64076335 CCTTTGGGA-CTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGCTTAGCCCGGCAT-TA 1 CC-TTCGGATCTTAA-CCGGATATAGT-ACTCGTACAAATGCCTTCGGGCTTAGCCCGG-ATATA * 64076398 GTAAATTGCACAAATG 62 GTAAATCGCACAAATG * * * 64076414 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA 1 CCTTCGGATCTTA-ACCGGATATAGT-AC-TCGTACAAATGCCTTCGGG-CTTAGCCCGGA 64076474 CATCATTCGA Statistics Matches: 115, Mismatches: 15, Indels: 18 0.78 0.10 0.12 Matches are distributed among these distances: 78 5 0.04 79 62 0.54 80 48 0.42 ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27 Consensus pattern (77 bp): CCTTCGGATCTTAACCGGATATAGTACTCGTACAAATGCCTTCGGGCTTAGCCCGGATATAGTAA ATCGCACAAATG Found at i:64076473 original size:40 final size:40 Alignment explanation
Indices: 64076270--64076473 Score: 202 Period size: 40 Copynumber: 5.1 Consensus size: 40 64076260 CGGAATTTAA ** * * 64076270 CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGC 1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC * * * * 64076310 CCGGTTATAGTAACTCGCATAAATGCCTTTGGGACTTAAC 1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC * * 64076350 CCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGC 1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC * * * 64076389 CCGGCAT-TAGTAAATTGCACAAATGCCTTC-GGATCTTAGT 1 CCGG-ATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC * * 64076429 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC 1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC 64076469 CCGGA 1 CCGGA 64076474 CATCATTCGA Statistics Matches: 135, Mismatches: 22, Indels: 14 0.79 0.13 0.08 Matches are distributed among these distances: 38 2 0.01 39 32 0.24 40 90 0.67 41 11 0.08 ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26 Consensus pattern (40 bp): CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC Found at i:64084584 original size:77 final size:82 Alignment explanation
Indices: 64084458--64084640 Score: 229 Period size: 77 Copynumber: 2.3 Consensus size: 82 64084448 GCTACTCGTT * * * 64084458 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGGGA-CTTAACCC 1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC * * 64084521 GGATTTAGTAAC-TCGCA 65 GGATATAGTAACTTAGCA ** 64084538 CAAATGCCTTC-GG-CTTAGCCCGGAAT-TAGTAA-TCGCACAAATGCCTTCGGATCTTAGTCCG 1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG * 64084599 GATATAGTCACTTAGCA 66 GATATAGTAACTTAGCA 64084616 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 64084641 CATCATTCGA Statistics Matches: 90, Mismatches: 8, Indels: 11 0.83 0.07 0.10 Matches are distributed among these distances: 76 3 0.03 77 37 0.41 78 25 0.28 79 14 0.16 80 11 0.12 ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25 Consensus pattern (82 bp): CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG GATATAGTAACTTAGCA Found at i:64084640 original size:40 final size:40 Alignment explanation
Indices: 64084458--64084640 Score: 225 Period size: 40 Copynumber: 4.7 Consensus size: 40 64084448 GCTACTCGTT * * 64084458 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA * * * 64084498 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA 64084538 CAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTAA-TCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA * * * 64084575 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA 1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA 64084616 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 64084641 CATCATTCGA Statistics Matches: 124, Mismatches: 12, Indels: 14 0.83 0.08 0.09 Matches are distributed among these distances: 37 18 0.15 38 16 0.13 39 17 0.14 40 62 0.50 41 11 0.09 ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA Found at i:64085358 original size:2 final size:2 Alignment explanation
Indices: 64085351--64085378 Score: 56 Period size: 2 Copynumber: 14.0 Consensus size: 2 64085341 TCACGTGCAA 64085351 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 64085379 GCAAGAGCCG Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 26 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:64091600 original size:28 final size:29 Alignment explanation
Indices: 64091571--64091711 Score: 87 Period size: 29 Copynumber: 5.0 Consensus size: 29 64091561 GCATGAACAT 64091571 AATGTGATTTGGGCTAGATGGGCCATATA 1 AATGTGATTTGGGCTAGATGGGCCATATA * * * * 64091600 AATGAGA-TTGGGCTA-ACGGCCCATATG 1 AATGTGATTTGGGCTAGATGGGCCATATA * * * 64091627 AATGTGAATTAGGCCT-GATGGGCCATATG 1 AATGTG-ATTTGGGCTAGATGGGCCATATA * * * ** ** 64091656 AACGTGAATTAGGCCGGAACGGCCATATA 1 AATGTGATTTGGGCTAGATGGGCCATATA 64091685 AATGCT-A-TTGGGCCTAG-TGGGCCATAT 1 AATG-TGATTTGGG-CTAGATGGGCCATAT 64091712 GCATGTATGT Statistics Matches: 82, Mismatches: 24, Indels: 13 0.69 0.20 0.11 Matches are distributed among these distances: 27 14 0.17 28 25 0.30 29 42 0.51 30 1 0.01 ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26 Consensus pattern (29 bp): AATGTGATTTGGGCTAGATGGGCCATATA Found at i:64091653 original size:29 final size:29 Alignment explanation
Indices: 64091620--64091717 Score: 94 Period size: 29 Copynumber: 3.4 Consensus size: 29 64091610 GGCTAACGGC 64091620 CCATATGAATGTGAATTAGGCCTGATGGG 1 CCATATGAATGTGAATTAGGCCTGATGGG * * ** 64091649 CCATATGAACGTGAATTAGGCCGGAACGG 1 CCATATGAATGTGAATTAGGCCTGATGGG * * 64091678 CCATATAAATGCT--ATTGGGCCT-AGTGGG 1 CCATATGAATG-TGAATTAGGCCTGA-TGGG * 64091706 CCATATGCATGT 1 CCATATGAATGT 64091718 ATGTAGGGGT Statistics Matches: 55, Mismatches: 12, Indels: 6 0.75 0.16 0.08 Matches are distributed among these distances: 27 2 0.04 28 18 0.33 29 34 0.62 30 1 0.02 ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26 Consensus pattern (29 bp): CCATATGAATGTGAATTAGGCCTGATGGG Found at i:64098742 original size:18 final size:19 Alignment explanation
Indices: 64098719--64098754 Score: 56 Period size: 19 Copynumber: 1.9 Consensus size: 19 64098709 GCAATAAAAA * 64098719 AGGAAAT-TTAAAAGAAAG 1 AGGAAATGTAAAAAGAAAG 64098737 AGGAAATGTAAAAAGAAA 1 AGGAAATGTAAAAAGAAA 64098755 AGAAAAAATA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 18 7 0.44 19 9 0.56 ACGTcount: A:0.64, C:0.00, G:0.22, T:0.14 Consensus pattern (19 bp): AGGAAATGTAAAAAGAAAG Found at i:64113283 original size:20 final size:20 Alignment explanation
Indices: 64113260--64113305 Score: 58 Period size: 20 Copynumber: 2.3 Consensus size: 20 64113250 TTCGGCCGTT 64113260 ATGGGCCACAT-TGGGCCGAA 1 ATGGGCC-CATGTGGGCCGAA ** 64113280 ATGGGCCTTTGTGGGCCGAA 1 ATGGGCCCATGTGGGCCGAA 64113300 ATGGGC 1 ATGGGC 64113306 TTTTGGGCCC Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 19 1 0.04 20 22 0.96 ACGTcount: A:0.20, C:0.22, G:0.39, T:0.20 Consensus pattern (20 bp): ATGGGCCCATGTGGGCCGAA Found at i:64113310 original size:20 final size:20 Alignment explanation
Indices: 64113271--64113314 Score: 74 Period size: 20 Copynumber: 2.3 Consensus size: 20 64113261 TGGGCCACAT 64113271 TGGGCCGAAATGGGCCTTTG 1 TGGGCCGAAATGGGCCTTTG 64113291 TGGGCCGAAATGGG-CTTT- 1 TGGGCCGAAATGGGCCTTTG 64113309 TGGGCC 1 TGGGCC 64113315 CCACACAGAT Statistics Matches: 24, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 18 6 0.25 19 4 0.17 20 14 0.58 ACGTcount: A:0.14, C:0.20, G:0.41, T:0.25 Consensus pattern (20 bp): TGGGCCGAAATGGGCCTTTG Found at i:64113575 original size:27 final size:27 Alignment explanation
Indices: 64113545--64113635 Score: 146 Period size: 27 Copynumber: 3.4 Consensus size: 27 64113535 CCCAAAAATA * 64113545 GGTAAAATGATCGTAATACCCCTGTAG 1 GGTAAAATGACCGTAATACCCCTGTAG * 64113572 GGTAAAATGACCGTAATACCCCTATAG 1 GGTAAAATGACCGTAATACCCCTGTAG * * 64113599 GGTAAAATGACCATAATACCCCTGTAT 1 GGTAAAATGACCGTAATACCCCTGTAG 64113626 GGTAAAATGA 1 GGTAAAATGA 64113636 TGATTATGAC Statistics Matches: 59, Mismatches: 5, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 27 59 1.00 ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24 Consensus pattern (27 bp): GGTAAAATGACCGTAATACCCCTGTAG Found at i:64115565 original size:40 final size:40 Alignment explanation
Indices: 64115484--64115705 Score: 322 Period size: 40 Copynumber: 5.6 Consensus size: 40 64115474 AAACCAAGTA ** * * 64115484 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG 1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG * 64115523 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG * 64115563 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG * * * 64115603 CCTTCAGGACTTGGCCCGGTTATAGTAACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG * * 64115643 CCTTCAGGACTTAGCTCGGTTATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG 64115683 CCTTCGGGACTTAGCCCGGTTAT 1 CCTTCGGGACTTAGCCCGGTTAT 64115706 CAATCCGAAT Statistics Matches: 167, Mismatches: 14, Indels: 3 0.91 0.08 0.02 Matches are distributed among these distances: 39 13 0.08 40 154 0.92 ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG Found at i:64119470 original size:50 final size:48 Alignment explanation
Indices: 64119303--64119483 Score: 172 Period size: 50 Copynumber: 3.7 Consensus size: 48 64119293 TAGGGTATAA * * * * 64119303 TGCCTATGCCATGTCCCAAATATGGTCTTACACTGGCTTAACCATCA-CG 1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTCA-CAT-ATCG * ** * * 64119352 T--CGATGCCATGTCCTAGGCATGGTCTTACACTAACTATCA-AAATCG 1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-TCACATATCG * * * 64119398 AGGCTGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATTCG 1 -TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCT-TCACATA-TCG 64119449 TGCCGATGCCATGTCCCAAACATGGTCTTACACTA 1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTA 64119484 ACATATCTCG Statistics Matches: 104, Mismatches: 21, Indels: 13 0.75 0.15 0.09 Matches are distributed among these distances: 45 1 0.01 46 3 0.03 47 28 0.27 48 2 0.02 49 33 0.32 50 34 0.33 51 3 0.03 ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27 Consensus pattern (48 bp): TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTTCACATATCG Found at i:64119481 original size:99 final size:97 Alignment explanation
Indices: 64119310--64119490 Score: 242 Period size: 96 Copynumber: 1.8 Consensus size: 97 64119300 TAATGCCTAT * * * ** 64119310 GCCATGTCCCAAATATGGTCTTACACTGGCTTAACCATCACGTCGATGCCATGTCCTAGGCATGG 1 GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG 64119375 TCTTACACTAAC-TATCAAAATCGAGGCTGAC 66 TCTTACACTAACATATCAAAATCGAGGCTGAC * 64119406 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CAT-ATTCGTGCCGATGCCATGTCCCAAA 1 GCCATGTCCCAAACATGGTCTTACACTAGCT-TAACCATCA--CGT--CGATGCCATGTCCCAAA 64119469 CATGGTCTTACACTAACATATC 61 CATGGTCTTACACTAACATATC 64119491 TCGTAGCTGA Statistics Matches: 73, Mismatches: 6, Indels: 8 0.84 0.07 0.09 Matches are distributed among these distances: 95 1 0.01 96 32 0.44 97 5 0.07 99 31 0.42 100 4 0.05 ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27 Consensus pattern (97 bp): GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG TCTTACACTAACATATCAAAATCGAGGCTGAC Found at i:64119500 original size:96 final size:93 Alignment explanation
Indices: 64119310--64119529 Score: 227 Period size: 96 Copynumber: 2.3 Consensus size: 93 64119300 TAATGCCTAT * * * ** 64119310 GCCATGTCCCAAATATGGTCTTACACTGGCTTAACCATCACGTCGATGCCATGTCCTAGGCATGG 1 GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG 64119375 TCTTACACTAACTATCAAAATCGAGGCTGAC 66 TCTTACACTAACTATC---ATCGAGGCTGAC * 64119406 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CAT-ATTCGTGCCGATGCCATGTCCCAAA 1 GCCATGTCCCAAACATGGTCTTACACTAGCT-TAACCATCA--CGT--CGATGCCATGTCCCAAA * 64119469 CATGGTCTTACACTAACATATC-TCGTA-GCTGAT 61 CATGGTCTTACACTAAC-TATCATCG-AGGCTGAC * * 64119502 G-CATGTGCCAGACAT-GTCTTACACTAGC 1 GCCATGTCCCAAACATGGTCTTACACTAGC 64119530 ACACAAATAA Statistics Matches: 108, Mismatches: 9, Indels: 16 0.81 0.07 0.12 Matches are distributed among these distances: 94 13 0.12 95 13 0.12 96 41 0.38 97 6 0.06 99 31 0.29 100 4 0.04 ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27 Consensus pattern (93 bp): GCCATGTCCCAAACATGGTCTTACACTAGCTTAACCATCACGTCGATGCCATGTCCCAAACATGG TCTTACACTAACTATCATCGAGGCTGAC Found at i:64119521 original size:44 final size:44 Alignment explanation
Indices: 64119406--64119527 Score: 131 Period size: 50 Copynumber: 2.6 Consensus size: 44 64119396 CGAGGCTGAC 64119406 GCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATTCGTGCCGAT 1 GCCATGTCCCAAACATGGTCTTACACTA------ACATATTCGTGCCGAT * 64119456 GCCATGTCCCAAACATGGTCTTACACTAACATATCTCGTAGCTGAT 1 GCCATGTCCCAAACATGGTCTTACACTAACATAT-TCGT-GCCGAT * * 64119502 G-CATGTGCCAGACAT-GTCTTACACTA 1 GCCATGTCCCAAACATGGTCTTACACTA 64119528 GCACACAAAT Statistics Matches: 67, Mismatches: 3, Indels: 10 0.84 0.04 0.12 Matches are distributed among these distances: 44 17 0.25 45 16 0.24 46 6 0.09 50 28 0.42 ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28 Consensus pattern (44 bp): GCCATGTCCCAAACATGGTCTTACACTAACATATTCGTGCCGAT Found at i:64124801 original size:27 final size:25 Alignment explanation
Indices: 64124764--64124857 Score: 116 Period size: 27 Copynumber: 3.5 Consensus size: 25 64124754 AATCCTAAAT * 64124764 TAGGTAAAATGACTGTAATACCCTTG 1 TAGGTAAAATGACCGTAATACCC-TG * 64124790 TAGGGTAAAATGACCGTAATGCCCCTG 1 TA-GGTAAAATGACCGTAAT-ACCCTG 64124817 TTAGGTAAAATGACCGTAATACCACTG 1 -TAGGTAAAATGACCGTAATACC-CTG 64124844 TATGGTAAAATGAC 1 TA-GGTAAAATGAC 64124858 AATTATGCCC Statistics Matches: 60, Mismatches: 3, Indels: 9 0.83 0.04 0.12 Matches are distributed among these distances: 26 6 0.10 27 49 0.82 28 5 0.08 ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27 Consensus pattern (25 bp): TAGGTAAAATGACCGTAATACCCTG Found at i:64124866 original size:54 final size:54 Alignment explanation
Indices: 64124763--64124867 Score: 149 Period size: 54 Copynumber: 1.9 Consensus size: 54 64124753 AAATCCTAAA * ** 64124763 TTAGGTAAAATGACTGTAATACCCTTGTAGGGTAAAATGACCGTAATGCCCCTG 1 TTAGGTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACAATAATGCCCCTG * * 64124817 TTAGGTAAAATGACCGTAATACCAC-TGTATGGTAAAATGACAATTATGCCC 1 TTAGGTAAAATGACCGTAATACC-CTTGTAGGGTAAAATGACAATAATGCCC 64124868 TTATGTTTCG Statistics Matches: 45, Mismatches: 5, Indels: 2 0.87 0.10 0.04 Matches are distributed among these distances: 54 44 0.98 55 1 0.02 ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28 Consensus pattern (54 bp): TTAGGTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACAATAATGCCCCTG Found at i:64129483 original size:24 final size:24 Alignment explanation
Indices: 64129456--64129518 Score: 126 Period size: 24 Copynumber: 2.6 Consensus size: 24 64129446 CTTATTATGT 64129456 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64129480 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64129504 TCGCACACATAGTGC 1 TCGCACACATAGTGC 64129519 ATTTGAGATT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 39 1.00 ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21 Consensus pattern (24 bp): TCGCACACATAGTGCCATAGTAAA Found at i:64131790 original size:2 final size:2 Alignment explanation
Indices: 64131783--64131812 Score: 60 Period size: 2 Copynumber: 15.0 Consensus size: 2 64131773 ACTCTTGTAC 64131783 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 64131813 GTTTGCACAT Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:64132589 original size:29 final size:28 Alignment explanation
Indices: 64132487--64132590 Score: 127 Period size: 29 Copynumber: 3.6 Consensus size: 28 64132477 GTGACAAGAT * 64132487 TGGCACTAAGTGTGCAAGCTTGAAATATA 1 TGGCACTAAGTGTGCGAGCTT-AAATATA * * * 64132516 TGGCACTAAGTGTACGAACTTAAATTGTA 1 TGGCACTAAGTGTGCGAGCTTAAA-TATA * * 64132545 TGGCACTATGTGTGCGAGCTTAAATCACA 1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA 64132574 TGGCACTAAGTGTGCGA 1 TGGCACTAAGTGTGCGA 64132591 AATCGATTAT Statistics Matches: 63, Mismatches: 10, Indels: 4 0.82 0.13 0.05 Matches are distributed among these distances: 28 4 0.06 29 59 0.94 ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28 Consensus pattern (28 bp): TGGCACTAAGTGTGCGAGCTTAAATATA Found at i:64140508 original size:24 final size:24 Alignment explanation
Indices: 64140481--64140543 Score: 126 Period size: 24 Copynumber: 2.6 Consensus size: 24 64140471 CTTATTATGT 64140481 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64140505 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64140529 TCGCACACATAGTGC 1 TCGCACACATAGTGC 64140544 ATTTGAGATT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 39 1.00 ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21 Consensus pattern (24 bp): TCGCACACATAGTGCCATAGTAAA Found at i:64148281 original size:24 final size:24 Alignment explanation
Indices: 64148254--64148316 Score: 126 Period size: 24 Copynumber: 2.6 Consensus size: 24 64148244 CTTATTATGT 64148254 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64148278 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64148302 TCGCACACATAGTGC 1 TCGCACACATAGTGC 64148317 ATTTGAGATT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 39 1.00 ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21 Consensus pattern (24 bp): TCGCACACATAGTGCCATAGTAAA Found at i:64151109 original size:27 final size:28 Alignment explanation
Indices: 64151079--64151148 Score: 106 Period size: 27 Copynumber: 2.5 Consensus size: 28 64151069 ATAATAAGTC * 64151079 CGCACACTTAGTGCTATATAATC-AGCT 1 CGCACACTTAGTGCTATATAATCAAACT * * 64151106 CGCACACATAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATATAATCAAACT 64151134 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 64151149 GTACAAATTT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 27 22 0.58 28 16 0.42 ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29 Consensus pattern (28 bp): CGCACACTTAGTGCTATATAATCAAACT Found at i:64154007 original size:40 final size:40 Alignment explanation
Indices: 64153825--64154011 Score: 185 Period size: 40 Copynumber: 4.7 Consensus size: 40 64153815 CAATTGAATG * * * * 64153825 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT ** * * * * 64153865 ATATCCGGATTAAGACCCGAAGGCAATTGTGCTAGTGACT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * * ** 64153905 ACATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * * * 64153945 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * 64153985 CTATCCGGTCTAAGACCCGAAGGCATT 1 ATATCCGGGCTAAGACCCGAAGGCATT 64154012 CGAGCATGTG Statistics Matches: 118, Mismatches: 29, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 40 118 1.00 ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT Found at i:64159248 original size:78 final size:79 Alignment explanation
Indices: 64159062--64159262 Score: 293 Period size: 78 Copynumber: 2.6 Consensus size: 79 64159052 TCGAATGATG * * * 64159062 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT 1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGATCCAAAGGCATTT 64159126 GTGCGAGTTACTAAA 65 GTGCGAGTTACTAAA * 64159141 T-CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGACT-AGATCCAAAGGCATTT 1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCAAAGGCATTT 64159203 GTGCGAGTTACTAAA 65 GTGCGAGTTACTAAA * * 64159218 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG 1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGG 64159263 GCTATGTCCC Statistics Matches: 110, Mismatches: 7, Indels: 10 0.87 0.06 0.08 Matches are distributed among these distances: 77 32 0.29 78 49 0.45 79 22 0.20 80 7 0.06 ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26 Consensus pattern (79 bp): TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCAAAGGCATTTG TGCGAGTTACTAAA Found at i:64159249 original size:40 final size:40 Alignment explanation
Indices: 64159062--64159283 Score: 271 Period size: 40 Copynumber: 5.7 Consensus size: 40 64159052 TCGAATGATG * * * * 64159062 TCCGGGCTAAG-TCCGAAGGC-TTTGTGCTAAGTGACTATA 1 TCCGGACTAAGATCCGAAGGCATTTGTGC-GAGTTACTAAA 64159101 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA 64159141 T-CGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA * 64159179 TCCGGACT-AGATCCAAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA ** 64159218 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA 1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA * * 64159259 -CCGGGCTATG-TCCCGAAGGCATTTG 1 TCCGGACTAAGAT-CCGAAGGCATTTG 64159284 AACGAGTAGC Statistics Matches: 166, Mismatches: 10, Indels: 13 0.88 0.05 0.07 Matches are distributed among these distances: 38 30 0.18 39 60 0.36 40 67 0.40 41 9 0.05 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27 Consensus pattern (40 bp): TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:64166379 original size:2 final size:2 Alignment explanation
Indices: 64166372--64166397 Score: 52 Period size: 2 Copynumber: 13.0 Consensus size: 2 64166362 GCTCTTGCAC 64166372 AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT 64166398 GTTTGCACAT Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:64167162 original size:40 final size:40 Alignment explanation
Indices: 64167105--64167330 Score: 273 Period size: 40 Copynumber: 5.7 Consensus size: 40 64167095 TAGAATGATG * * * * 64167105 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA 1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA * 64167145 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA * * 64167185 TCCGGACTAAGATCTGAAGGCATTTGTGCGAGTTACTCAA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA 64167225 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA ** 64167265 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA 1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA * * 64167306 -CCGGGCTATG-TCTCGAAGGCATTTG 1 TCCGGACTAAGATC-CGAAGGCATTTG 64167331 AACGAGTAGC Statistics Matches: 167, Mismatches: 14, Indels: 10 0.87 0.07 0.05 Matches are distributed among these distances: 39 2 0.01 40 156 0.93 41 9 0.05 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27 Consensus pattern (40 bp): TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:64167349 original size:80 final size:80 Alignment explanation
Indices: 64167105--64167330 Score: 307 Period size: 80 Copynumber: 2.8 Consensus size: 80 64167095 TAGAATGATG * * 64167105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGATCCGAAGGCATT * 64167169 CGTGCGAGTTACTAAA 65 TGTGCGAGTTACTAAA * * 64167185 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTCA-ATCCGGACTAAGATCCGAAGGCAT 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGACTAAGATCCGAAGGCAT 64167248 TTGTGCGAGTTACTAAA 64 TTGTGCGAGTTACTAAA * * * * 64167265 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-TCTCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATC-CGAAGGCATT 64167329 TG 65 TG 64167331 AACGAGTAGC Statistics Matches: 129, Mismatches: 11, Indels: 12 0.85 0.07 0.08 Matches are distributed among these distances: 79 4 0.03 80 116 0.90 81 9 0.07 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27 Consensus pattern (80 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT GTGCGAGTTACTAAA Found at i:64170577 original size:48 final size:48 Alignment explanation
Indices: 64170506--64170891 Score: 637 Period size: 48 Copynumber: 8.0 Consensus size: 48 64170496 TGTACAAGAT * 64170506 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG 64170554 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG * * * 64170602 AAATATGTATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG * * * 64170650 AAATATATGTGTGATATGTATATGTGGTAAAGCCAAATGGCGAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG * * 64170698 AAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCGAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG * * 64170746 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG * * 64170794 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG * * 64170842 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG 1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG 64170890 AA 1 AA 64170892 TGTTGTAACA Statistics Matches: 317, Mismatches: 21, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 48 317 1.00 ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31 Consensus pattern (48 bp): AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG Found at i:64170989 original size:37 final size:37 Alignment explanation
Indices: 64170936--64171043 Score: 171 Period size: 37 Copynumber: 2.9 Consensus size: 37 64170926 GGAAATGTAT 64170936 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * 64170973 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * * 64171010 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT 64171044 TCGTCTGAGC Statistics Matches: 65, Mismatches: 6, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 37 65 1.00 ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27 Consensus pattern (37 bp): TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG Found at i:64176650 original size:29 final size:28 Alignment explanation
Indices: 64176618--64176675 Score: 89 Period size: 29 Copynumber: 2.0 Consensus size: 28 64176608 CATATTCATC * 64176618 TGGCCTATTTGGCCCAAATCACCTTTATA 1 TGGCCTATTAGGCCCAAATCACC-TTATA * 64176647 TGGCCTGTTAGGCCCAAATCACCTTATA 1 TGGCCTATTAGGCCCAAATCACCTTATA 64176675 T 1 T 64176676 TCATGCTCAC Statistics Matches: 27, Mismatches: 2, Indels: 1 0.90 0.07 0.03 Matches are distributed among these distances: 28 6 0.22 29 21 0.78 ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33 Consensus pattern (28 bp): TGGCCTATTAGGCCCAAATCACCTTATA Found at i:64178423 original size:39 final size:39 Alignment explanation
Indices: 64178378--64178490 Score: 145 Period size: 39 Copynumber: 2.9 Consensus size: 39 64178368 TATCTGGGCT * * 64178378 TAAAGATCCGCAGGCTTCGTGCTGGAATTGTATCCAGAC 1 TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCCAGAC * * ** 64178417 TTAAGATCCGCAGGCTTCGTGCTGGTACTATATCTGGAC 1 TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCCAGAC * * * 64178456 TAAAGGTCCGCAGGCTTCGTACTGGTACTATATCC 1 TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCC 64178491 GGGCTTAAAG Statistics Matches: 64, Mismatches: 10, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 39 64 1.00 ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28 Consensus pattern (39 bp): TAAAGATCCGCAGGCTTCGTGCTGGAACTATATCCAGAC Found at i:64193693 original size:16 final size:16 Alignment explanation
Indices: 64193667--64193704 Score: 51 Period size: 16 Copynumber: 2.4 Consensus size: 16 64193657 ACTAGATCGG 64193667 CAAAA-GCCGAAAAGC 1 CAAAATGCCGAAAAGC * * 64193682 CGAAATGCCGAAATGC 1 CAAAATGCCGAAAAGC 64193698 CAAAATG 1 CAAAATG 64193705 ACAAAAAAGC Statistics Matches: 19, Mismatches: 3, Indels: 1 0.83 0.13 0.04 Matches are distributed among these distances: 15 4 0.21 16 15 0.79 ACGTcount: A:0.47, C:0.24, G:0.21, T:0.08 Consensus pattern (16 bp): CAAAATGCCGAAAAGC Found at i:64194173 original size:28 final size:28 Alignment explanation
Indices: 64194132--64194231 Score: 123 Period size: 28 Copynumber: 3.6 Consensus size: 28 64194122 AGGAAGCATC * 64194132 CTGGTGGCTATGCCACAAATTATCTGAT 1 CTGGTGGCTCTGCCACAAATTATCTGAT * * 64194160 CTGGTGGCTCTGCCACATA-TATCTGTT 1 CTGGTGGCTCTGCCACAAATTATCTGAT * 64194187 CTGGTGGCTCTGCCAC-GATTATCTGTAT 1 CTGGTGGCTCTGCCACAAATTATCTG-AT * * 64194215 CTGGTGACTCTGTCACA 1 CTGGTGGCTCTGCCACA 64194232 TTATTTGTTC Statistics Matches: 62, Mismatches: 7, Indels: 5 0.84 0.09 0.07 Matches are distributed among these distances: 26 1 0.02 27 29 0.47 28 32 0.52 ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34 Consensus pattern (28 bp): CTGGTGGCTCTGCCACAAATTATCTGAT Found at i:64194190 original size:27 final size:26 Alignment explanation
Indices: 64194132--64194244 Score: 136 Period size: 27 Copynumber: 4.2 Consensus size: 26 64194122 AGGAAGCATC * * 64194132 CTGGTGGCTATGCCACAAATTATCTGAT 1 CTGGTGGCTCTGCCAC--ATTATCTGTT 64194160 CTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTCTGCCACAT-TATCTGTT 64194187 CTGGTGGCTCTGCCACGATTATCTGTAT 1 CTGGTGGCTCTGCCAC-ATTATCTGT-T * * * 64194215 CTGGTGACTCTGTCACATTATTTGTT 1 CTGGTGGCTCTGCCACATTATCTGTT 64194241 CTGG 1 CTGG 64194245 CAGCCATGCT Statistics Matches: 77, Mismatches: 5, Indels: 8 0.86 0.06 0.09 Matches are distributed among these distances: 26 7 0.09 27 38 0.49 28 32 0.42 ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37 Consensus pattern (26 bp): CTGGTGGCTCTGCCACATTATCTGTT Found at i:64194217 original size:55 final size:54 Alignment explanation
Indices: 64194132--64194244 Score: 156 Period size: 55 Copynumber: 2.1 Consensus size: 54 64194122 AGGAAGCATC * 64194132 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT 1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT * * * * 64194187 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATTTGTT 1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT 64194241 CTGG 1 CTGG 64194245 CAGCCATGCT Statistics Matches: 52, Mismatches: 5, Indels: 3 0.87 0.08 0.05 Matches are distributed among these distances: 54 19 0.37 55 33 0.63 ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37 Consensus pattern (54 bp): CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT Found at i:64197724 original size:50 final size:50 Alignment explanation
Indices: 64197600--64197889 Score: 260 Period size: 50 Copynumber: 5.8 Consensus size: 50 64197590 AACCGAAGCT * * * * * 64197600 ATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACA 1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC 64197649 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC 1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC * * * ** 64197699 ATCTGATACACGTAGTAGCCTACACTTAGTACTACACACATGA-TTGAAGTT 1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCT-AA-CC * * * * * * * * * * 64197750 GTCGGGTACGCATAGTAGCCTGCACTTAGTGCTACTCATGCGACCTAACT 1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC * * * 64197800 ATCTGGTACACGTAGTAGCCTGCACCTAGTACTACACACGTGACGTAAAACC 1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCT--AACC *** * * * * 64197852 ATCTTAAACACATAGTAGCTTGCACATAGTACTACACA 1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACA 64197890 TATGTTCTAA Statistics Matches: 195, Mismatches: 40, Indels: 9 0.80 0.16 0.04 Matches are distributed among these distances: 49 42 0.22 50 83 0.43 51 34 0.17 52 36 0.18 ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25 Consensus pattern (50 bp): ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACC Found at i:64197889 original size:151 final size:149 Alignment explanation
Indices: 64197604--64197890 Score: 414 Period size: 151 Copynumber: 1.9 Consensus size: 149 64197594 GAAGCTATCT 64197604 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC 1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC * * * * 64197669 TACACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC 66 TACACCTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTA- 64197734 ACACATGATTGAAGTTGTCG 130 ACACATGATTGAAGTTGTCG * * * * 64197754 GGTACGCATAGTAGCCTGCACTTAGTGCTACTCATGCGACCTAACTATCTGGTACACGTAGTAGC 1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACAATCTGGTACACGTAGTAGC * * * * * 64197819 CTGCACCTAGTACTACACACGTGACGTAAAACCATCTTAAACACATAGTAGCTTGCACATAGTAC 65 CTACACCTAGTACTACACACGTGACCT--AACCATCTGAAACACATAGTAGCCTACACATAGTAC 64197884 T-ACACAT 128 TAACACAT 64197891 ATGTTCTAAA Statistics Matches: 121, Mismatches: 13, Indels: 5 0.87 0.09 0.04 Matches are distributed among these distances: 150 38 0.31 151 52 0.43 153 31 0.26 ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25 Consensus pattern (149 bp): GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC TACACCTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTAA CACATGATTGAAGTTGTCG Found at i:64201485 original size:28 final size:27 Alignment explanation
Indices: 64201420--64201489 Score: 97 Period size: 27 Copynumber: 2.6 Consensus size: 27 64201410 ATAGTGAGTC * * 64201420 CGCACACTTAGTACTATATGATCATCT 1 CGCACACTTAGTGCTATATAATCATCT 64201447 CGCACACTTAGTGCTATATAATCAAAT-T 1 CGCACACTTAGTGCTATATAATC--ATCT 64201475 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 64201490 GTACAAATTT Statistics Matches: 39, Mismatches: 2, Indels: 3 0.89 0.05 0.07 Matches are distributed among these distances: 27 21 0.54 28 16 0.41 29 2 0.05 ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCATCT Found at i:64208860 original size:29 final size:29 Alignment explanation
Indices: 64208792--64208852 Score: 113 Period size: 29 Copynumber: 2.1 Consensus size: 29 64208782 ACGAGATTGG * 64208792 ACTAAGTGTGCATGCTGGAAATATATGGC 1 ACTAAGTGTGCATGCTGGAAATATACGGC 64208821 ACTAAGTGTGCATGCTGGAAATATACGGC 1 ACTAAGTGTGCATGCTGGAAATATACGGC 64208850 ACT 1 ACT 64208853 GGGTGTGCGA Statistics Matches: 31, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 29 31 1.00 ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26 Consensus pattern (29 bp): ACTAAGTGTGCATGCTGGAAATATACGGC Found at i:64208958 original size:2 final size:2 Alignment explanation
Indices: 64208953--64208983 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 64208943 GTGTGTACTC 64208953 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 64208984 CTCCGATCGA Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:64216068 original size:24 final size:24 Alignment explanation
Indices: 64216041--64216103 Score: 126 Period size: 24 Copynumber: 2.6 Consensus size: 24 64216031 CTTATTATGT 64216041 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64216065 TCGCACACATAGTGCCATAGTAAA 1 TCGCACACATAGTGCCATAGTAAA 64216089 TCGCACACATAGTGC 1 TCGCACACATAGTGC 64216104 ATTTGAGATT Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 39 1.00 ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21 Consensus pattern (24 bp): TCGCACACATAGTGCCATAGTAAA Found at i:64221952 original size:40 final size:40 Alignment explanation
Indices: 64221825--64221954 Score: 165 Period size: 40 Copynumber: 3.2 Consensus size: 40 64221815 ATGCTGGAAA * * 64221825 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG 1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG * * ** 64221865 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG * 64221905 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG 64221945 TTATATCCGG 1 TTATATCCGG 64221955 TTGTATTCCG Statistics Matches: 76, Mismatches: 12, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 39 4 0.05 40 72 0.95 ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24 Consensus pattern (40 bp): TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG Found at i:64221953 original size:80 final size:79 Alignment explanation
Indices: 64221788--64221954 Score: 196 Period size: 80 Copynumber: 2.1 Consensus size: 79 64221778 CAATTGAATG * * 64221788 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA 1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA 64221853 TTGTGCTAGTGGCT 66 TTGTGCTAGTGGCT * * * ** * 64221867 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC 1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC * 64221931 -ATTCGTGC-ACGTGGTT 64 AATT-GTGCTA-GTGGCT 64221947 ATATCCGG 1 ATATCCGG 64221955 TTGTATTCCG Statistics Matches: 74, Mismatches: 10, Indels: 7 0.81 0.11 0.08 Matches are distributed among these distances: 79 29 0.39 80 45 0.61 ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23 Consensus pattern (79 bp): ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA TTGTGCTAGTGGCT Found at i:64229994 original size:40 final size:40 Alignment explanation
Indices: 64229867--64229996 Score: 174 Period size: 40 Copynumber: 3.2 Consensus size: 40 64229857 ATGCTGGAAA * * 64229867 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG 1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG * * * 64229907 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG * 64229947 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG 64229987 TTATATCCGG 1 TTATATCCGG 64229997 TTGTATTCCG Statistics Matches: 78, Mismatches: 10, Indels: 4 0.85 0.11 0.04 Matches are distributed among these distances: 39 4 0.05 40 74 0.95 ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24 Consensus pattern (40 bp): TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG Found at i:64251560 original size:29 final size:29 Alignment explanation
Indices: 64251494--64251620 Score: 166 Period size: 29 Copynumber: 4.3 Consensus size: 29 64251484 AAGTCTACAT * * * 64251494 ACATGCATATGGCCTACTAGGCCC-AATC 1 ACATTCATATGGCCCATTAGGCCCAAATC * 64251522 TCATTCATATGGCCCATTAGGCCCAAATC 1 ACATTCATATGGCCCATTAGGCCCAAATC * * 64251551 ATATTCATATGGCCCATTAGGACCAAATC 1 ACATTCATATGGCCCATTAGGCCCAAATC * 64251580 ACATTCATACGGTGCCCATTAGGCCCAAATC 1 ACATTCATA-TG-GCCCATTAGGCCCAAATC 64251611 ACATTCATAT 1 ACATTCATAT 64251621 ACATGCTTTC Statistics Matches: 85, Mismatches: 11, Indels: 4 0.85 0.11 0.04 Matches are distributed among these distances: 28 20 0.24 29 38 0.45 30 1 0.01 31 26 0.31 ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26 Consensus pattern (29 bp): ACATTCATATGGCCCATTAGGCCCAAATC Found at i:64251601 original size:60 final size:57 Alignment explanation
Indices: 64251494--64251620 Score: 164 Period size: 60 Copynumber: 2.2 Consensus size: 57 64251484 AAGTCTACAT * * * * * 64251494 ACATGCATATGGCCTACTAGGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATC 1 ACATTCATATGGCCCACTAGGCCAAATCACATTCATAGGGCCCATTAGGCCCAAATC * * 64251551 ATATTCATATGGCCCATTAGGACCAAATCACATTCATACGGTGCCCATTAGGCCCAAATC 1 ACATTCATATGGCCCACTAGG-CCAAATCACATTCATA-GG-GCCCATTAGGCCCAAATC 64251611 ACATTCATAT 1 ACATTCATAT 64251621 ACATGCTTTC Statistics Matches: 59, Mismatches: 8, Indels: 3 0.84 0.11 0.04 Matches are distributed among these distances: 57 17 0.29 58 14 0.24 59 1 0.02 60 27 0.46 ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26 Consensus pattern (57 bp): ACATTCATATGGCCCACTAGGCCAAATCACATTCATAGGGCCCATTAGGCCCAAATC Found at i:64251824 original size:8 final size:8 Alignment explanation
Indices: 64251810--64251864 Score: 58 Period size: 8 Copynumber: 7.0 Consensus size: 8 64251800 CATAGCCAAA 64251810 CTTTT-GG 1 CTTTTCGG * 64251817 CTTTTTGG 1 CTTTTCGG * * 64251825 CATTTCGA 1 CTTTTCGG 64251833 CTTTTCGG 1 CTTTTCGG * 64251841 CATTTCGG 1 CTTTTCGG 64251849 CTTTTCGG 1 CTTTTCGG * 64251857 CATTTCGG 1 CTTTTCGG 64251865 GATTTACCAA Statistics Matches: 39, Mismatches: 8, Indels: 1 0.81 0.17 0.02 Matches are distributed among these distances: 7 5 0.13 8 34 0.87 ACGTcount: A:0.07, C:0.22, G:0.24, T:0.47 Consensus pattern (8 bp): CTTTTCGG Done.