Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 214 of 328
Found at i:64251864 original size:16 final size:16
Alignment explanation
Indices: 64251815--64251864 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
64251805 CCAAACTTTT
*
64251815 GGCTTTTTGGCATTTC
1 GGCTTTTCGGCATTTC
*
64251831 GACTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
64251847 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
64251863 GG
1 GG
64251865 GATTTACCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.08, C:0.22, G:0.26, T:0.44
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:64251869 original size:8 final size:8
Alignment explanation
Indices: 64251823--64251869 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
64251813 TTGGCTTTTT
64251823 GGCATTTC
1 GGCATTTC
* *
64251831 GACTTTTC
1 GGCATTTC
64251839 GGCATTTC
1 GGCATTTC
*
64251847 GGCTTTTC
1 GGCATTTC
64251855 GGCATTTC
1 GGCATTTC
*
64251863 GGGATTT
1 GGCATTT
64251870 ACCAATCTAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.11, C:0.21, G:0.26, T:0.43
Consensus pattern (8 bp):
GGCATTTC
Found at i:64254614 original size:28 final size:28
Alignment explanation
Indices: 64254545--64254644 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
64254535 GACAAGATTG
* * * *
64254545 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
64254575 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
64254603 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
64254632 GCACTAAGTGTGC
1 GCACTAAGTGTGC
64254645 AGATTCACTA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 18 0.29
30 18 0.29
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:64262562 original size:28 final size:28
Alignment explanation
Indices: 64262493--64262593 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
64262483 GACAAGATTG
* * * *
64262493 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
64262523 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
64262551 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
64262580 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64262594 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:64264590 original size:43 final size:43
Alignment explanation
Indices: 64264534--64264625 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
64264524 CTTACATGTT
* * * * * *
64264534 ATCACATATCGATGCCACTGTCCTAGACAGGGTCTTACACAAA
1 ATCACATAACGATGCCAATATCCCAAACAAGGTCTTACACAAA
* *
64264577 ATCATATAACGATGCCAATATCCCAAACAAGGTCTTACACATA
1 ATCACATAACGATGCCAATATCCCAAACAAGGTCTTACACAAA
64264620 ATCACA
1 ATCACA
64264626 ATACAATTCC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (43 bp):
ATCACATAACGATGCCAATATCCCAAACAAGGTCTTACACAAA
Found at i:64264638 original size:43 final size:44
Alignment explanation
Indices: 64264564--64264668 Score: 106
Period size: 43 Copynumber: 2.4 Consensus size: 44
64264554 TCCTAGACAG
* * *
64264564 GGTCTTACACAAAATCA-TATAACGATGCCAATATCCCAAACAA
1 GGTCTTACACATAATCACAATAACAATGCCAATATCCCAAACAA
* * * *
64264607 GGTCTTACACATAATCACAAT-ACAATTCCAATGTCCCAGACAT
1 GGTCTTACACATAATCACAATAACAATGCCAATATCCCAAACAA
* **
64264650 GGTATTACATGTAATCACA
1 GGTCTTACACATAATCACA
64264669 CTTCGGTAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 49 0.96
44 2 0.04
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (44 bp):
GGTCTTACACATAATCACAATAACAATGCCAATATCCCAAACAA
Found at i:64275736 original size:39 final size:39
Alignment explanation
Indices: 64275642--64275864 Score: 299
Period size: 39 Copynumber: 5.7 Consensus size: 39
64275632 TGAATGATAC
* * * * *
64275642 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATA
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA
*
64275681 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
1 -CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
* *
64275721 CCGGGTTAATACCCGAAGGAATTTGTGCGAGTTG-TATA
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
*
64275759 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTT-TTATA
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
*
64275797 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
1 -CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
*
64275837 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
64275865 TTGTGGTTAT
Statistics
Matches: 166, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 39 0.23
39 89 0.54
40 36 0.22
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
Found at i:64275851 original size:116 final size:117
Alignment explanation
Indices: 64275642--64275864 Score: 369
Period size: 116 Copynumber: 1.9 Consensus size: 117
64275632 TGAATGATAC
* *
64275642 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
*
64275707 TGCGAGTTGCTATACCGGGTTAATACCCGAAGG-AATTTGTGCGAGTTGTATA
66 TGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAA-TTGTGCGAGTTGTATA
* * *
64275759 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGT-TTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
64275823 TGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAATTGTGC
66 TGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAATTGTGC
64275865 TTGTGGTTAT
Statistics
Matches: 99, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
116 69 0.70
117 30 0.30
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (117 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAATTGTGCGAGTTGTATA
Found at i:64275892 original size:77 final size:77
Alignment explanation
Indices: 64275642--64275884 Score: 303
Period size: 77 Copynumber: 3.1 Consensus size: 77
64275632 TGAATGATAC
* * * *
64275642 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--TATA-CCGGGTTAAGACCCGAAGGCATTT
*
64275706 GTGCGAGTTGCTATA-
63 GTGCGAG-TGTTATAT
* * *
64275721 CCGGGTTAATACCCGAAGGAATTTGTGCGAGTTGTATACCGGGTTAAGACCCGAAGGCATTTGTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTATACCGGGTTAAGACCCGAAGGCATTTGTG
*
64275786 CGAGTTTTATAT
66 CGAGTGTTATAT
*
64275798 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAATTGT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TATACCGGGTTAAGACCCGAAGGCATTTGT
**
64275863 GCTTGTGGTTATAT
65 GCGAGT-GTTATAT
64275877 CC-GGCTAA
1 CCGGGCTAA
64275885 ATTCGAAGAA
Statistics
Matches: 144, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
76 5 0.03
77 61 0.42
78 43 0.30
79 33 0.23
80 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (77 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTATACCGGGTTAAGACCCGAAGGCATTTGTG
CGAGTGTTATAT
Found at i:64283907 original size:40 final size:39
Alignment explanation
Indices: 64283852--64284096 Score: 309
Period size: 40 Copynumber: 6.2 Consensus size: 39
64283842 TGAATGATAC
* * *
64283852 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
64283892 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-TTGCATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTT--ATAT
*
64283932 CCGGGTTAAGACCCGAAGGCATTTGTGCGA--GTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
64283969 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* *
64284009 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * **
64284049 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
64284089 CC-GGCTAA
1 CCGGGCTAA
64284097 ATTCCGAAGA
Statistics
Matches: 182, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
37 32 0.18
38 2 0.01
39 8 0.04
40 140 0.77
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:64283984 original size:77 final size:78
Alignment explanation
Indices: 64283848--64284076 Score: 309
Period size: 77 Copynumber: 2.9 Consensus size: 78
64283838 CATTTGAATG
* * *
64283848 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGC--GAGATTATATCCGGGCTAAGACCCGAAGGCA
64283913 TTTGTGCGAGTT-TGC
64 TTTGTGCGAGTTGT-C
*
64283928 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAG-TTATATCCGGGCTAAGACCCGAAGGCATT
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATTATATCCGGGCTAAGACCCGAAGGCATT
*
64283992 TGTGCGAGTTGTT
66 TGTGCGAGTTGTC
* * * *
64284005 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGAT--TATATCCGGGCTAAGACCCGAAGGCA
*
64284070 ATTGTGC
64 TTTGTGC
64284077 TTGTGGTTAT
Statistics
Matches: 135, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
77 72 0.53
78 4 0.03
80 59 0.44
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (78 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGTC
Found at i:64284058 original size:117 final size:117
Alignment explanation
Indices: 64283852--64284076 Score: 382
Period size: 117 Copynumber: 1.9 Consensus size: 117
64283842 TGAATGATAC
* *
64283852 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
*
64283917 TGCGAGTTTGCATACCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTATAT
66 TGCGAGTTTGCATACCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTTATAT
*
64283969 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
64284033 GTGCGAG-TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
65 GTGCGAGTTTGC-ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
64284077 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
116 4 0.04
117 96 0.94
118 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (117 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTTGCATACCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTTATAT
Found at i:64285072 original size:24 final size:25
Alignment explanation
Indices: 64285040--64285092 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
64285030 CGACTTTGAA
64285040 AATTTACCATAAATTATCCA-AGAC
1 AATTTACCATAAATTATCCAGAGAC
64285064 AATTTACCATAAATTATCCAGAGAC
1 AATTTACCATAAATTATCCAGAGAC
64285089 AATT
1 AATT
64285093 AGAAGTCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 20 0.71
25 8 0.29
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.30
Consensus pattern (25 bp):
AATTTACCATAAATTATCCAGAGAC
Found at i:64293085 original size:42 final size:42
Alignment explanation
Indices: 64293038--64293144 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
64293028 TATTGGTCTC
64293038 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
64293080 GGCACTAAGTGTGCTGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
64293122 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
64293145 ATTTGTACAG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:64293210 original size:27 final size:28
Alignment explanation
Indices: 64293153--64293222 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
64293143 AAATTTGTAC
**
64293153 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
64293181 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
64293208 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64293223 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:64301582 original size:28 final size:28
Alignment explanation
Indices: 64301536--64301649 Score: 93
Period size: 29 Copynumber: 4.0 Consensus size: 28
64301526 ACTTTCCTGT
* ** * *
64301536 ATATGGCCCACTAAACCCAATTATATTC
1 ATATGGCCCATTAGGCCCAATCACATTC
*
64301564 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCC-AATCACATTC
* * *
64301593 ATGTGGCCCTTTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCC-AATCACATTC
* * *
64301622 ATGTGGCCCATCATGCCCAAGTCACATT
1 ATATGGCCCATTAGGCCCAA-TCACATT
64301650 AAATTCATGC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 17 0.23
29 56 0.77
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACATTC
Found at i:64301601 original size:29 final size:29
Alignment explanation
Indices: 64301567--64301649 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 29
64301557 TATATTCATA
64301567 TGGCCCATTAGGCCCAAATCACATTTATG
1 TGGCCCATTAGGCCCAAATCACATTTATG
*
64301596 TGGCCCTTTAGGCCCAAATCACATTTATG
1 TGGCCCATTAGGCCCAAATCACATTTATG
* * *
64301625 TGGCCCATCATGCCCAAGTCACATT
1 TGGCCCATTAGGCCCAAATCACATT
64301650 AAATTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATG
Found at i:64303694 original size:27 final size:27
Alignment explanation
Indices: 64303657--64303749 Score: 77
Period size: 26 Copynumber: 3.4 Consensus size: 27
64303647 AATACTTTAG
*
64303657 TTTACCAAATTACTGAAA-TACCCTCGA
1 TTTA-CAAATTACTCAAAGTACCCTCGA
64303684 CTTGTA-AAATTAC-CAAAGTACCCTCGA
1 -TT-TACAAATTACTCAAAGTACCCTCGA
***
64303711 TTTACAAATTACT-ATTTTACCCTCGA
1 TTTACAAATTACTCAAAGTACCCTCGA
*
64303737 TTTAAAGAATTAC
1 TTTACA-AATTAC
64303750 CGTTTTACCC
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
25 2 0.04
26 27 0.49
27 22 0.40
28 2 0.04
29 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTACAAATTACTCAAAGTACCCTCGA
Found at i:64303755 original size:27 final size:26
Alignment explanation
Indices: 64303702--64304164 Score: 453
Period size: 27 Copynumber: 17.2 Consensus size: 26
64303692 ATTACCAAAG
* *
64303702 TACCCTCGATTTACAAATTACTATTT
1 TACCCTCGATTTAAAAATTACTGTTT
*
64303728 TACCCTCGATTTAAAGAATTACCGTTT
1 TACCCTCGATTTAAA-AATTACTGTTT
*
64303755 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTA-AAAATTACTGTTT
* **
64303782 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTA-AAAATTACTGTTT
*
64303809 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTA-AAAATTACTGTTT
*
64303836 TACCCAT-GATTTACAGAATTACTGTTT
1 TACCC-TCGATTTA-AAAATTACTGTTT
*
64303863 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTA-AAAATTACTGTTT
* * *
64303890 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTA-AAAATTACTGTTT
*
64303917 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTA-AAAATTACTGTTT
* * * *
64303944 TACCATTGATTTATAGAATTACTATTT
1 TACCCTCGATTTA-AAAATTACTGTTT
* ** *
64303971 TACCTTTAATTTACAAAATTACCGTTT
1 TACCCTCGATTTA-AAAATTACTGTTT
*
64303998 TACCCTCGATTTTAAAAATTACTATTT
1 TACCCTCGA-TTTAAAAATTACTGTTT
*
64304025 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTA-AAAATTACT-GTTT
*
64304052 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTA-AAAATTACTGTTT
* * *
64304079 TACCCTTGATTTACAAAATTACTATTG
1 TACCCTCGATTTA-AAAATTACTGTTT
*
64304106 TACCCTCGATTTAAAGAATTACCGTTT
1 TACCCTCGATTTAAA-AATTACTGTTT
* * **
64304133 TACTCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTA-AAAATTACTGTTT
64304160 TACCC
1 TACCC
64304165 CTAGGGTGTT
Statistics
Matches: 371, Mismatches: 56, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
26 22 0.06
27 340 0.92
28 9 0.02
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (26 bp):
TACCCTCGATTTAAAAATTACTGTTT
Found at i:64303793 original size:54 final size:54
Alignment explanation
Indices: 64303702--64304164 Score: 558
Period size: 54 Copynumber: 8.6 Consensus size: 54
64303692 ATTACCAAAG
* *
64303702 TACCCTCGATTTAC-AAATTACTATTTTACCCTCGATTTAAAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACCATTT
* *
64303755 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACCATTT
* * **
64303809 TACCCTCGATTTACAAAATTACCGTTTTACCCAT-GATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCC-TCGATTTAAAGAATTACCATTT
* * * *
64303863 TACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACCATTT
* * * * *
64303917 TACCCTCGATTTACAGAATTACTGTTTTACCATTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACCATTT
* ** * *
64303971 TACCTTTAATTTACAAAATTACCGTTTTACCCTCGATTTTAAA-AATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGA-TTTAAAGAATTACCATTT
* *
64304025 TACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTATAA-AATTACCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTTTACCCTCGATTTA-AAGAATTACCATTT
* * * *
64304079 TACCCTTGATTTACAAAATTACTATTGTACCCTCGATTTAAAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACCATTT
* * * **
64304133 TACTCTCAATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTGTTTTACCC
64304165 CTAGGGTGTT
Statistics
Matches: 358, Mismatches: 44, Indels: 15
0.86 0.11 0.04
Matches are distributed among these distances:
53 20 0.06
54 331 0.92
55 7 0.02
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACCATTT
Found at i:64303829 original size:81 final size:81
Alignment explanation
Indices: 64303702--64304164 Score: 599
Period size: 81 Copynumber: 5.7 Consensus size: 81
64303692 ATTACCAAAG
* *
64303702 TACCCTCGATTTACA-AATTACTATTTTACCCTCGATTTA-AAGAATTACCGTTTTACCCTTGAT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAA-AATTACCGTTTTACCCTTGAT
64303765 TTACAAAATTACTGTTT
65 TTACAAAATTACTGTTT
* * * *
64303782 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCATGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCGTTTTACCCTTGATT
*
64303847 TACAGAATTACTGTTT
66 TACAAAATTACTGTTT
* * * ** *
64303863 TACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCGTTTTACCCTTGATT
*
64303928 TACAGAATTACTGTTT
66 TACAAAATTACTGTTT
* * * * * * * *
64303944 TACCATTGATTTATAGAATTACTATTTTACCTTTAATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCGTTTTACCCTTGA-T
*
64304009 TTA-AAAATTACTATTT
65 TTACAAAATTACTGTTT
* * *
64304025 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCGTTTTACCCTTGATT
* *
64304090 TACAAAATTACTATTG
66 TACAAAATTACTGTTT
* * * *
64304106 TACCCTCGATTTAAAGAATTACCGTTTTACTCTCAATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCGTTTTACCC
64304165 CTAGGGTGTT
Statistics
Matches: 336, Mismatches: 43, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
80 18 0.05
81 312 0.93
82 6 0.02
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCGTTTTACCCTTGATT
TACAAAATTACTGTTT
Found at i:64304444 original size:27 final size:26
Alignment explanation
Indices: 64304400--64304451 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64304390 CTCACTGCAA
*
64304400 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64304427 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
64304452 GTAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:64304734 original size:6 final size:6
Alignment explanation
Indices: 64304723--64304803 Score: 94
Period size: 6 Copynumber: 13.3 Consensus size: 6
64304713 TTGTCACCTA
*
64304723 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
64304772 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
64304804 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
5 3 0.05
6 56 0.88
7 3 0.05
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:64304743 original size:43 final size:43
Alignment explanation
Indices: 64304695--64304800 Score: 149
Period size: 43 Copynumber: 2.5 Consensus size: 43
64304685 TTACCTGACA
* *
64304695 CTGATTCTGATTCTAATTTTGTCACCTAATTCTGATTCTGATT
1 CTGATTCTGATTCTAATTCTATCACCTAATTCTGATTCTGATT
* *
64304738 CTGATTCTGATTCTGATTCTATCACCTGATTCTGATTCTGATT
1 CTGATTCTGATTCTAATTCTATCACCTAATTCTGATTCTGATT
* * *
64304781 CTCATTTTGATTCTAGTTCT
1 CTGATTCTGATTCTAATTCT
64304801 GATAATGTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.49
Consensus pattern (43 bp):
CTGATTCTGATTCTAATTCTATCACCTAATTCTGATTCTGATT
Found at i:64308922 original size:29 final size:29
Alignment explanation
Indices: 64308836--64308936 Score: 96
Period size: 29 Copynumber: 3.5 Consensus size: 29
64308826 CTCGATCACA
** *
64308836 CACACTTAGTGCCATGTGATTT-AAGCCCG
1 CACACTTAGTGCCAT-ACATTTCAAGCTCG
* * * * * *
64308865 CAAACATAGTGCCATATAGTCCAAACTCG
1 CACACTTAGTGCCATACATTTCAAGCTCG
64308894 CACACTTAGTGCCATACATTTCAAGCTCG
1 CACACTTAGTGCCATACATTTCAAGCTCG
*
64308923 CACACTCAGTGCCA
1 CACACTTAGTGCCA
64308937 ATCTTATCAC
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
28 2 0.04
29 54 0.96
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.24
Consensus pattern (29 bp):
CACACTTAGTGCCATACATTTCAAGCTCG
Found at i:64313283 original size:40 final size:40
Alignment explanation
Indices: 64313158--64313364 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
64313148 CAATTGAATG
* * ** * **
64313158 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
64313198 ATATCCGGGTTAAGA-CCGAAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
*
64313237 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
64313277 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
64313317 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
64313357 ATATCCGG
1 ATATCCGG
64313365 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 30 0.21
40 108 0.77
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:64321175 original size:40 final size:40
Alignment explanation
Indices: 64321116--64321302 Score: 212
Period size: 40 Copynumber: 4.7 Consensus size: 40
64321106 CAATTGAATG
* * * *
64321116 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
64321156 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
64321196 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
64321236 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
*
64321276 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
64321303 CGAGCATGTG
Statistics
Matches: 123, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 123 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:64321321 original size:40 final size:39
Alignment explanation
Indices: 64321116--64321323 Score: 168
Period size: 40 Copynumber: 5.2 Consensus size: 39
64321106 CAATTGAATG
* * ** * * *
64321116 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTC
* * *
64321156 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGAC
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTC
* *
64321195 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 -ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTC
* * * * *
64321236 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCATTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT--GTC
* *
64321277 -TATCCGGGCTAAGACCCGAAGGCATTCGAGCATGTGGTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTC
64321316 ATATCCGG
1 ATATCCGG
64321324 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
39 6 0.04
40 124 0.91
41 6 0.04
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTC
Found at i:64321322 original size:80 final size:80
Alignment explanation
Indices: 64321156--64321323 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 80
64321146 GCTAGTAATT
* * * *
64321156 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTACATCCGGGCTAAGACCCGAAGGCA
* * *
64321221 TTCGTGCAAGTTGTT
66 TTCGAGCAAGTGGTC
* * * *
64321236 AAATCCGGGCTAATACCCGAAGGCATTTGCGCAAGTCA-TTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTAC-ATCCGGGCTAAGACCCGAAGGC
*
64321300 ATTCGAGCATGTGGTC
65 ATTCGAGCAAGTGGTC
64321316 ATATCCGG
1 ATATCCGG
64321324 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 2 0.03
80 72 0.97
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTCACTACATCCGGGCTAAGACCCGAAGGCA
TTCGAGCAAGTGGTC
Found at i:64322756 original size:45 final size:45
Alignment explanation
Indices: 64322704--64322812 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 45
64322694 GGGTGTTACA
** * *
64322704 AAGACCACGTCTGGGATGTTGGCATCAATATATGT-GTTTTCGTGT
1 AAGACCACGTCTGGGACATTGCCATCAATATATGTGGTTAT-GTGT
*
64322749 AAGACCACGTCTGGGACATTGCCATCGATATATGTGGTTATGTGT
1 AAGACCACGTCTGGGACATTGCCATCAATATATGTGGTTATGTGT
* *
64322794 AAGTCCATGTCTGGGACAT
1 AAGACCACGTCTGGGACAT
64322813 CGGCATCGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 52 0.93
46 4 0.07
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (45 bp):
AAGACCACGTCTGGGACATTGCCATCAATATATGTGGTTATGTGT
Found at i:64322835 original size:40 final size:43
Alignment explanation
Indices: 64322746--64322893 Score: 115
Period size: 40 Copynumber: 3.5 Consensus size: 43
64322736 TGTGTTTTCG
* * * * * * **
64322746 TGTAAGACCACGTCTGGGACATTGCCATCGATATATGTGGTTATG
1 TGTAAGACCATGTCTGGGACAATGGCATCG--ATATGAGATAACA
* * *
64322791 TGTAAGTCCATGTCTGGGAC-ATCGGCATCG-TAT-TGAT-CCA
1 TGTAAGACCATGTCTGGGACAAT-GGCATCGATATGAGATAACA
* *
64322831 TGTAAGACCCTGTTTGGGACAATGGCATCGATATGAGATAACA
1 TGTAAGACCATGTCTGGGACAATGGCATCGATATGAGATAACA
*
64322874 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
64322894 GTTGGCATTG
Statistics
Matches: 82, Mismatches: 16, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
40 24 0.29
41 8 0.10
42 6 0.07
43 19 0.23
44 1 0.01
45 24 0.29
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAATGGCATCGATATGAGATAACA
Found at i:64324759 original size:28 final size:27
Alignment explanation
Indices: 64324720--64324779 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
64324710 CCCTGTTTAG
*
64324720 AATA-CTTTAGTTTACTAAAATTACCGA
1 AATACCTTTAGTTT-CTAAAAATACCGA
* *
64324747 AATACCTTTAGTTTGTAAAAATACTGA
1 AATACCTTTAGTTTCTAAAAATACCGA
64324774 AATACC
1 AATACC
64324780 CTCGATTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (27 bp):
AATACCTTTAGTTTCTAAAAATACCGA
Found at i:64324765 original size:27 final size:27
Alignment explanation
Indices: 64324735--64324833 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
64324725 TTTAGTTTAC
64324735 TAAAATTACCGAAATACCTTTAG-TTTG
1 TAAAATTACCGAAATACC-TTAGATTTG
* * * *
64324762 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
64324789 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
64324816 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
64324834 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.08
27 57 0.92
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:64324834 original size:54 final size:54
Alignment explanation
Indices: 64324735--64324841 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
64324725 TTTAGTTTAC
* * * *
64324735 TAAAATTACCGAAATACCTTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTGAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* *
64324789 TAAAATTACTGAAATACCTTCGA-CTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTT-GAGCTTGTAAAAATACTCAAA-TACCCCCGATTT
64324842 ACATAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 3 0.07
54 41 0.91
55 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTGAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:64324849 original size:27 final size:27
Alignment explanation
Indices: 64324819--64324880 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
64324809 CGACTTGTAA
*
64324819 AATTACC-AAAGTACCCCCGATTTACAT
1 AATTACCGAAA-TACCACCGATTTACAT
** *
64324846 AATTACCGTTATACCACTGATTTACAT
1 AATTACCGAAATACCACCGATTTACAT
64324873 AATTACCG
1 AATTACCG
64324881 TTTTACCCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCGAAATACCACCGATTTACAT
Found at i:64325014 original size:27 final size:27
Alignment explanation
Indices: 64324830--64325013 Score: 217
Period size: 27 Copynumber: 6.8 Consensus size: 27
64324820 ATTACCAAAG
* * *
64324830 TACCCCCGATTTACATAATTACCGTTA
1 TACCCTCGATTTACAGAATTACCGTTT
*
64324857 TACCACT-GATTTACATAATTACCGTTT
1 TACC-CTCGATTTACAGAATTACCGTTT
**
64324884 TACCCTTAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64324911 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
64324938 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
64324965 TACCTTTGATTTGCAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
64324992 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
64325014 TAAAATACCC
Statistics
Matches: 137, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 134 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:64325039 original size:54 final size:54
Alignment explanation
Indices: 64324927--64325131 Score: 151
Period size: 54 Copynumber: 3.8 Consensus size: 54
64324917 CAATTTACAG
* * **** * * * *
64324927 AATTACCGTTTTACCCTCGATTTATAGAATTATTGTTTTACCTTTGATTTGCAG
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
* *
64324981 AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
**** * * * *
64325035 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGA
1 AATTACCGTTTTACCCTCGA-TTTATAAAATTACTAAAATACCCTTGGTTTGTAA
*** ** * *
64325089 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCC
1 AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCC
64325132 CTGATTTACA
Statistics
Matches: 124, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.02
54 121 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
Found at i:64325039 original size:81 final size:81
Alignment explanation
Indices: 64324880--64325039 Score: 185
Period size: 81 Copynumber: 2.0 Consensus size: 81
64324870 CATAATTACC
* ****
64324880 GTTTTACCCTTAATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTC
1 GTTTTACCCTTAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTC
*
64324945 GATTTATAGAATTATT
66 GATTTATAAAATTATT
* * * * * * *
64324961 GTTTTACCTTTGATTTGCAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
1 GTTTTACCCTTAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTC
* *
64325026 GGTTTGTAAAATTA
66 GATTTATAAAATTA
64325040 CCAAAATACC
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (81 bp):
GTTTTACCCTTAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTC
GATTTATAAAATTATT
Found at i:64325231 original size:27 final size:27
Alignment explanation
Indices: 64325006--64325233 Score: 215
Period size: 27 Copynumber: 8.4 Consensus size: 27
64324996 CTCGATTTAC
*
64325006 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
64325033 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
64325060 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
64325087 GAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
64325114 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
64325141 AAAGTTA-CAGAAATACCCTTGATTTTCT
1 AAAATTACCA-AAATACCCTTG-GTTTGT
*** * **
64325169 AAAAATTATGGAAATACCATTGGTTTAC
1 -AAAATTACCAAAATACCCTTGGTTTGT
*
64325197 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
64325224 AGATTTACCA
1 AAAATTACCA
64325234 TGACACCCTT
Statistics
Matches: 161, Mismatches: 36, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 137 0.85
28 6 0.04
29 16 0.10
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:64325366 original size:27 final size:27
Alignment explanation
Indices: 64325275--64325366 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
64325265 ACCCCTATTA
* *
64325275 GGTAAAAAGACCGTAAAGTCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
64325302 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
64325329 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
64325356 GGTAAAATGAC
1 GGTAAAATGAC
64325367 TAATATGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:64326378 original size:27 final size:27
Alignment explanation
Indices: 64326340--64326453 Score: 219
Period size: 27 Copynumber: 4.2 Consensus size: 27
64326330 TGTGGATATA
64326340 GGCTAAATGGGTCTAGATGACGAAATT
1 GGCTAAATGGGTCTAGATGACGAAATT
64326367 GGCTAAATGGGTCTAGATGACGAAATT
1 GGCTAAATGGGTCTAGATGACGAAATT
*
64326394 GGCTAAATGGGTCTAGATGATGAAATT
1 GGCTAAATGGGTCTAGATGACGAAATT
64326421 GGCTAAATGGGTCTAGATGACGAAATT
1 GGCTAAATGGGTCTAGATGACGAAATT
64326448 GGCTAA
1 GGCTAA
64326454 GTAGGGCCCA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (27 bp):
GGCTAAATGGGTCTAGATGACGAAATT
Found at i:64326634 original size:25 final size:25
Alignment explanation
Indices: 64326605--64326653 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
64326595 TTATAACATG
* * *
64326605 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
64326630 AAAATAACCATTATACCCCTAGGT
1 AAAATAACCATTATACCCCTAGGT
64326654 TTAATGTATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:64326723 original size:9 final size:9
Alignment explanation
Indices: 64326695--64326747 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
64326685 ATAAACATGG
64326695 TATGTATGA
1 TATGTATGA
*
64326704 TATGCACATGA
1 TATG--TATGA
*
64326715 CATGTATGA
1 TATGTATGA
64326724 TATGCATATGA
1 TATG--TATGA
64326735 TATGTATGA
1 TATGTATGA
64326744 TATG
1 TATG
64326748 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:64326733 original size:11 final size:11
Alignment explanation
Indices: 64326699--64326755 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
64326689 ACATGGTATG
64326699 TATGATATGCA
1 TATGATATGCA
* *
64326710 CATGACATG--
1 TATGATATGCA
64326719 TATGATATGCA
1 TATGATATGCA
64326730 TATGATATG--
1 TATGATATGCA
64326739 TATGATATGCA
1 TATGATATGCA
*
64326750 CATGAT
1 TATGAT
64326756 GTATTCATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (11 bp):
TATGATATGCA
Found at i:64326755 original size:20 final size:20
Alignment explanation
Indices: 64326689--64326755 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
64326679 ATTTTGATAA
*
64326689 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64326709 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64326729 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64326749 ACATGAT
1 ACATGAT
64326756 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64326926 original size:24 final size:23
Alignment explanation
Indices: 64326812--64326924 Score: 190
Period size: 23 Copynumber: 4.9 Consensus size: 23
64326802 TGAAAAACGA
64326812 CTTATGCCCCAGTTATTAAAGGG
1 CTTATGCCCCAGTTATTAAAGGG
*
64326835 CTTGTGCCCCAGTTATTAAAGGG
1 CTTATGCCCCAGTTATTAAAGGG
64326858 CTTATGCCCCAGTTATTAAAGGG
1 CTTATGCCCCAGTTATTAAAGGG
64326881 CTTATGCCCCAGTTATTAAAAGGG
1 CTTATGCCCCAGTTATT-AAAGGG
* *
64326905 CTTTTGCCCCAGTTACTAAA
1 CTTATGCCCCAGTTATTAAA
64326925 AGAGGCTAGG
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
23 64 0.75
24 21 0.25
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (23 bp):
CTTATGCCCCAGTTATTAAAGGG
Found at i:64327174 original size:31 final size:31
Alignment explanation
Indices: 64327139--64327202 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
64327129 CGTTTACAGT
*
64327139 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
64327170 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
64327201 AA
1 AA
64327203 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:64341575 original size:49 final size:50
Alignment explanation
Indices: 64341407--64341577 Score: 158
Period size: 50 Copynumber: 3.5 Consensus size: 50
64341397 GAAGTGTCAA
* * * *
64341407 TGTAAGACCATGTCTAGGACATGGCATCGG--TACG-TATAG-AGGTGGTAG
1 TGTAAGACCATGTCTAGGACATGGCATAGGCCT-CGATTTCGAAGG-GCTAG
* * * * *
64341455 TGCAAGACCATGTCTGGGACATAGCATCGGCCTCGATTTCTAAGGGCTAG
1 TGTAAGACCATGTCTAGGACATGGCATAGGCCTCGATTTCGAAGGGCTAG
* *
64341505 TGTAAGACCATGTCTCA-GACATGGCGTAGGCCTCGATTTCGATA-GTC-AG
1 TGTAAGACCATGTCT-AGGACATGGCATAGGCCTCGATTTCGA-AGGGCTAG
64341554 TGTAAGACCATGTCTAGGACATGG
1 TGTAAGACCATGTCTAGGACATGG
64341578 AATCAACATT
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
48 28 0.27
49 26 0.25
50 44 0.43
51 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (50 bp):
TGTAAGACCATGTCTAGGACATGGCATAGGCCTCGATTTCGAAGGGCTAG
Found at i:64342611 original size:13 final size:13
Alignment explanation
Indices: 64342593--64342617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64342583 TGGCCATGTG
64342593 AGGGACACGGGCC
1 AGGGACACGGGCC
64342606 AGGGACACGGGC
1 AGGGACACGGGC
64342618 ATGTGTCAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:64342793 original size:20 final size:20
Alignment explanation
Indices: 64342754--64342793 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
64342744 GTTATAATGA
64342754 TCACATGGGCGTATTGCCCTT
1 TCACATGGGCG-ATTGCCCTT
64342775 TCACATGGGC-ATGTGCCCT
1 TCACATGGGCGAT-TGCCCT
64342794 GTATCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.15, C:0.30, G:0.25, T:0.30
Consensus pattern (20 bp):
TCACATGGGCGATTGCCCTT
Found at i:64347792 original size:29 final size:29
Alignment explanation
Indices: 64347733--64347804 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
64347723 GTGACGAGAT
*
64347733 TGGCACTAAGTGTGCAAGCTGGAAATATA
1 TGGCACTAAGTGTGCAAGCTGCAAATATA
* * *
64347762 TGGCACTGAGTGTGCGAGCT-CAAATTGTA
1 TGGCACTAAGTGTGCAAGCTGCAAA-TATA
*
64347791 TGGCACTATGTGTG
1 TGGCACTAAGTGTG
64347805 TGGGCTTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
28 3 0.08
29 33 0.92
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTGCAAATATA
Found at i:64347815 original size:29 final size:28
Alignment explanation
Indices: 64347733--64347835 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
64347723 GTGACGAGAT
* *
64347733 TGGCACTAAGTGTGCAAGCTGGAAAT-ATA
1 TGGCACT-AGTGTGCGAGCT-CAAATCATA
**
64347762 TGGCACTGAGTGTGCGAGCTCAAATTGTA
1 TGGCACT-AGTGTGCGAGCTCAAATCATA
* * * *
64347791 TGGCACTATGTGTGTGGGCTTAAATCACA
1 TGGCACTA-GTGTGCGAGCTCAAATCATA
64347820 TGGCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
64347836 TGACCGAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 5 0.08
29 54 0.90
30 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTCAAATCATA
Found at i:64358517 original size:29 final size:29
Alignment explanation
Indices: 64358478--64358554 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 29
64358468 GTTAATAATC
*
64358478 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64358508 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64358537 AGCCCGCACACTTAGTGC
1 AACCCGCACACTTAGTGC
64358555 TAATCTCACA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64361078 original size:17 final size:18
Alignment explanation
Indices: 64361036--64361084 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
64361026 AGTTGAAAAG
64361036 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
64361055 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
64361072 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
64361085 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:64361971 original size:40 final size:40
Alignment explanation
Indices: 64361905--64362071 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
64361895 AAATTGAATG
* * *
64361905 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
64361944 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
64361984 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
64362024 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
64362064 ATATCCGG
1 ATATCCGG
64362072 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:64369081 original size:17 final size:18
Alignment explanation
Indices: 64369039--64369087 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
64369029 AGTTGAAAAG
64369039 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
64369058 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
64369075 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
64369088 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:64369975 original size:40 final size:39
Alignment explanation
Indices: 64369909--64370058 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
64369899 AAATTGAATG
* * *
64369909 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGGTAATT
* * ***
64369948 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTGGTAATT
*
64369988 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGCCCGAAGGCAATT-GTGCTG-GTAATT
* *
64370027 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGC
64370059 ACGTGATATC
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 42 0.46
40 44 0.48
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGGTAATT
Found at i:64370032 original size:39 final size:40
Alignment explanation
Indices: 64369909--64370058 Score: 155
Period size: 39 Copynumber: 3.8 Consensus size: 40
64369899 AAATTGAATG
* * *
64369909 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
64369948 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
64369988 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* *
64370027 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64370059 ACGTGATATC
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 43 0.47
40 43 0.47
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:64370041 original size:79 final size:79
Alignment explanation
Indices: 64369909--64370058 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
64369899 AAATTGAATG
*
64369909 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
64369974 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
64369988 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
64370051 ATTTGTGC
64 AATTGTGC
64370059 ACGTGATATC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:64379946 original size:29 final size:29
Alignment explanation
Indices: 64379907--64379985 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
64379897 CTTAATAATC
*
64379907 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64379937 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64379966 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64379986 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64383139 original size:38 final size:37
Alignment explanation
Indices: 64383049--64383123 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 37
64383039 TCTAACATTA
*
64383049 TGTACTTAGTTAAGTTCATGTGTAAATGTAGTAGTATT
1 TGTACTTA-TTAAGTTCATGTGTAAATGTAGTAATATT
*
64383087 TGTACTTAGGTAAGTTCATGTGTAAATGTAGTAATAT
1 TGTACTTA-TTAAGTTCATGTGTAAATGTAGTAATAT
64383124 AATTGTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (37 bp):
TGTACTTATTAAGTTCATGTGTAAATGTAGTAATATT
Found at i:64386921 original size:46 final size:44
Alignment explanation
Indices: 64386870--64386989 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 44
64386860 GACGAGAGAT
64386870 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--GCC
* * * * *
64386916 AGTGTAAGTCATATCTGGGACATGCATTGGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCC
64386960 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
64386990 CGTAGATATA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 10 0.16
45 15 0.24
46 38 0.60
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCC
Found at i:64388223 original size:30 final size:28
Alignment explanation
Indices: 64388169--64388224 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
64388159 ACACGGGCTA
* *
64388169 GAACATGGGCATGTCATGGCCGTGTGAG
1 GAACATGGGCATGGCATGGACGTGTGAG
64388197 GAACATGGGCCATAGGCATGGACGTGTG
1 GAACATGGG-CAT-GGCATGGACGTGTG
64388225 TCAGGTCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 3 0.12
30 12 0.50
ACGTcount: A:0.23, C:0.18, G:0.39, T:0.20
Consensus pattern (28 bp):
GAACATGGGCATGGCATGGACGTGTGAG
Found at i:64388395 original size:20 final size:21
Alignment explanation
Indices: 64388356--64388395 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
64388346 GTTATAATGA
*
64388356 TCACATGGGCATGTTGCCCTT
1 TCACATGAGCATGTTGCCCTT
*
64388377 TCACATGAGCGTG-TGCCCT
1 TCACATGAGCATGTTGCCCT
64388396 GTTTCAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.30, G:0.25, T:0.30
Consensus pattern (21 bp):
TCACATGAGCATGTTGCCCTT
Found at i:64399317 original size:41 final size:41
Alignment explanation
Indices: 64399272--64399353 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
64399262 GATTCTGTAT
* *
64399272 TGGGCTTAGGCCCAGTCTATTTCTGCATACTATATATCTGA
1 TGGGCTCAAGCCCAGTCTATTTCTGCATACTATATATCTGA
64399313 TGGGCTCAAGCCCAGTCTATTTCTGCATACTATATATCTGA
1 TGGGCTCAAGCCCAGTCTATTTCTGCATACTATATATCTGA
64399354 ATGTTTGCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (41 bp):
TGGGCTCAAGCCCAGTCTATTTCTGCATACTATATATCTGA
Found at i:64402514 original size:27 final size:27
Alignment explanation
Indices: 64402458--64402533 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
64402448 TGGATAAGTT
* * * *
64402458 GTAGAATTACCAAAATACCCTTGTAAG
1 GTAGAAATACCGAAATACCCCTATAAG
*
64402485 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAAATACCGAAATACCCCTATAAG
* * **
64402512 GTAGGACTACCGATTTACCCCT
1 GTAGAAATACCGAAATACCCCT
64402534 GGAGGGTAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCCTATAAG
Found at i:64405439 original size:27 final size:27
Alignment explanation
Indices: 64405409--64405466 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
64405399 TGGATAAGTT
64405409 GTAGAATT-TCCAAAATACCCCTGTAAG
1 GTAGAATTAT-CAAAATACCCCTGTAAG
* *
64405436 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTATCAAAATACCCCTGTAAG
64405463 GTAG
1 GTAG
64405467 GACTACCGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTATCAAAATACCCCTGTAAG
Found at i:64405482 original size:27 final size:27
Alignment explanation
Indices: 64405421--64405475 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
64405411 AGAATTTCCA
* *
64405421 AAATACCCCTGTAAGGTAGAATTATCG
1 AAATACCCCTGTAAGGTAGAACTACCG
* *
64405448 AAATACCCCTGTAGGGTAGGACTACCG
1 AAATACCCCTGTAAGGTAGAACTACCG
64405475 A
1 A
64405476 TTTACCCTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (27 bp):
AAATACCCCTGTAAGGTAGAACTACCG
Found at i:64406169 original size:27 final size:26
Alignment explanation
Indices: 64406125--64406175 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
64406115 CTCGCTGCAA
*
64406125 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64406152 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
64406176 CTCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:64408426 original size:27 final size:27
Alignment explanation
Indices: 64408370--64408445 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
64408360 TGGATAAGTT
* * * *
64408370 GTAGAATTACCAAAATACCCTTGTAAG
1 GTAGAAATACCGAAATACCCCTATAAG
*
64408397 GTAGAAATACCGAAATACCCCTATAGG
1 GTAGAAATACCGAAATACCCCTATAAG
* * **
64408424 GTAGGACTACCGATTTACCCCT
1 GTAGAAATACCGAAATACCCCT
64408446 GGAGGGTAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCCTATAAG
Found at i:64410521 original size:29 final size:29
Alignment explanation
Indices: 64410497--64410590 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
64410487 TCGCACACCC
*
64410497 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
64410526 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
64410555 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
64410584 AGTGCCA
1 AGTGCCA
64410591 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:64410522 original size:58 final size:58
Alignment explanation
Indices: 64410459--64410590 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
64410449 GATTTAAGCC
* * * *
64410459 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
64410517 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
64410575 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64410591 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:64418478 original size:29 final size:29
Alignment explanation
Indices: 64418454--64418546 Score: 159
Period size: 29 Copynumber: 3.2 Consensus size: 29
64418444 TCGCACACCC
64418454 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCGTATATTTCCAGCATGCACACTT
*
64418483 AGTGCTGTATATTTCCAGCATGCACACTT
1 AGTGCCGTATATTTCCAGCATGCACACTT
* *
64418512 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCGTATATTTCCAGCATGCACACTT
64418541 AGTGCC
1 AGTGCC
64418547 AATCTCGTCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (29 bp):
AGTGCCGTATATTTCCAGCATGCACACTT
Found at i:64418547 original size:29 final size:29
Alignment explanation
Indices: 64418387--64418547 Score: 153
Period size: 29 Copynumber: 5.6 Consensus size: 29
64418377 TACTCGATTT
** * *
64418387 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
64418416 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** *
64418445 CGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* **
64418474 TGCACACTTAGTGCTGTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64418503 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64418532 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64418548 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
28 2 0.02
29 107 0.98
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64422568 original size:14 final size:14
Alignment explanation
Indices: 64422549--64422578 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
64422539 ACCCATTCAT
*
64422549 TCCCTCATTCATCA
1 TCCCTCATCCATCA
64422563 TCCCTCATCCATCA
1 TCCCTCATCCATCA
64422577 TC
1 TC
64422579 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:64424271 original size:29 final size:29
Alignment explanation
Indices: 64424238--64424398 Score: 162
Period size: 29 Copynumber: 5.6 Consensus size: 29
64424228 GTGACGAGAT
64424238 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64424267 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64424296 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
64424325 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * * **
64424354 TGGCACTATGTGTGTGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
64424383 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64424399 AAATCGAGTA
Statistics
Matches: 110, Mismatches: 21, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 108 0.98
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:64424437 original size:2 final size:2
Alignment explanation
Indices: 64424432--64424470 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
64424422 GTGCGTACTC
64424432 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64424471 CTCCGATCGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:64427994 original size:39 final size:40
Alignment explanation
Indices: 64427886--64428070 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
64427876 TCGAATGATG
* *
64427886 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
64427925 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
64427966 TCCGGGCTAAG-CCCGAAGGTATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
64428005 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
64428044 AACTGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
64428071 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:64428022 original size:79 final size:80
Alignment explanation
Indices: 64427886--64428070 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
64427876 TCGAATGATG
*
64427886 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
64427951 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAT
* * **
64427966 TCCGGGCTAAG-CCCGAAGG-TATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCT-TT-GTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
64428027 TTTGTGCGAGTTACT-AT
63 TTTGTGCGAGTTACTAAT
* * *
64428044 AACTGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGC-TTTG
64428071 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 8, Indels: 14
0.80 0.07 0.12
Matches are distributed among these distances:
78 4 0.04
79 59 0.66
80 24 0.27
81 2 0.02
82 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:64428092 original size:79 final size:77
Alignment explanation
Indices: 64427920--64428103 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
64427910 GTGCTAAGTG
* *
64427920 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
* **
64427985 TATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * *
64427999 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
64428063 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
64428078 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
64428104 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:64449034 original size:40 final size:39
Alignment explanation
Indices: 64448866--64449036 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
64448856 AGAAATTGAA
* *
64448866 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
64448906 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
64448946 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
64448986 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
64449026 TGATATCCGGG
1 TGATATCCGGG
64449037 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:64457041 original size:40 final size:39
Alignment explanation
Indices: 64456873--64457043 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
64456863 AGAAATTGAA
* *
64456873 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
64456913 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
64456953 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
64456993 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
64457033 TGATATCCGGG
1 TGATATCCGGG
64457044 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:64458559 original size:39 final size:40
Alignment explanation
Indices: 64458495--64458647 Score: 188
Period size: 40 Copynumber: 3.9 Consensus size: 40
64458485 GGTTCGGGGT
* *
64458495 GTTAC-AAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGA
1 GTTACTAATTCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA
* *
64458534 GTTACTAATTCCGAGCTAAG-CCCGAAGGCATTGGTGCGA
1 GTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
* *
64458573 GTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 GTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
* *
64458613 GTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 GTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTG
64458648 AACGAGTAGC
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 40 0.41
40 58 0.59
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
Found at i:64458669 original size:79 final size:79
Alignment explanation
Indices: 64458495--64458680 Score: 202
Period size: 79 Copynumber: 2.4 Consensus size: 79
64458485 GGTTCGGGGT
** *
64458495 GTTAC-AAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGAGCTAAGCCCG
1 GTTACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCG
**
64458558 AAGGCATTGGTGCGA
65 AAGGCATTGGAACGA
* * *
64458573 GTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCC
1 GTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCC
*
64458637 GAAGGCATTTGAACGA
64 GAAGGCATTGGAACGA
* *
64458653 G-TAGCTATATCC-GGTTAAATTCCGAAGG
1 GTTA-CTAAATCCGGGTTAAATCCCGAAGG
64458681 TACGTGATTC
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 8 0.09
79 59 0.65
80 24 0.26
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
GTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGA
AGGCATTGGAACGA
Found at i:64461555 original size:16 final size:15
Alignment explanation
Indices: 64461534--64461574 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
64461524 GGGTATTATA
64461534 TATATTATATGTTAG
1 TATATTATATGTTAG
*
64461549 TTATATTATAAGTTAG
1 -TATATTATATGTTAG
*
64461565 TAAATTATAT
1 TATATTATAT
64461575 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (15 bp):
TATATTATATGTTAG
Found at i:64469956 original size:28 final size:28
Alignment explanation
Indices: 64469915--64469977 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
64469905 GGTGATGACT
* * **
64469915 GACACGGGCGTGTCTAGGCTGTGTAAGG
1 GACACGGACATGTCTAGGCCATGTAAGG
64469943 GACACGGACATGTCTAGGCCATGTAAGG
1 GACACGGACATGTCTAGGCCATGTAAGG
64469971 GACACGG
1 GACACGG
64469978 GCGGGTGCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.24, C:0.21, G:0.38, T:0.17
Consensus pattern (28 bp):
GACACGGACATGTCTAGGCCATGTAAGG
Found at i:64472681 original size:41 final size:41
Alignment explanation
Indices: 64472636--64472753 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64472626 TGAAAGATAA
64472636 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64472677 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64472707 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64472748 ATGTAG
1 ATGTAG
64472754 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64472692 original size:71 final size:71
Alignment explanation
Indices: 64472604--64472767 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64472594 GAGATGTATC
64472604 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64472669 AGGACA
66 AGGACA
64472675 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64472740 AGGACA
66 AGGACA
64472746 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64472768 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64480062 original size:41 final size:41
Alignment explanation
Indices: 64480017--64480134 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64480007 TGAAAGATAA
64480017 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64480058 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64480088 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64480129 ATGTAG
1 ATGTAG
64480135 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64480073 original size:71 final size:71
Alignment explanation
Indices: 64479985--64480148 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64479975 GAGATGTATC
64479985 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64480050 AGGACA
66 AGGACA
64480056 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64480121 AGGACA
66 AGGACA
64480127 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64480149 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64486404 original size:40 final size:40
Alignment explanation
Indices: 64486319--64486469 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
64486309 AATTGAATGA
* * *
64486319 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
64486359 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
64486400 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
64486439 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
64486470 ACATTATATC
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:64488413 original size:27 final size:26
Alignment explanation
Indices: 64488367--64488453 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
64488357 TGGAGGAAGC
* *
64488367 GTTCTGGTGGCTATGCCACAAATATTT
1 GTTCTGGTGGCTATGTCAC-AATATCT
* *
64488394 GTTCTGGTGGCTTTTTCACAATATCT
1 GTTCTGGTGGCTATGTCACAATATCT
* * *
64488420 ATATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGTCACAATATCT
64488447 GTTCTGG
1 GTTCTGG
64488454 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
26 12 0.24
27 38 0.76
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
GTTCTGGTGGCTATGTCACAATATCT
Found at i:64491544 original size:28 final size:29
Alignment explanation
Indices: 64491513--64491573 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
64491503 AAAGTGATTT
*
64491513 TTGACAAAAATGTCAATT-AG-GGATTAAA
1 TTGACAAAAATGTAAATTGAGTGG-TTAAA
* *
64491541 TTGAGAAAAGTGTAAATTGAGTGGTTAAA
1 TTGACAAAAATGTAAATTGAGTGGTTAAA
64491570 TTGA
1 TTGA
64491574 GAAATAAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 15 0.54
29 11 0.39
30 2 0.07
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.31
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTGAGTGGTTAAA
Found at i:64493968 original size:43 final size:43
Alignment explanation
Indices: 64493875--64493974 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
64493865 AGATGTGTTT
* * * *
64493875 ACATGTAAGACCATGTCTGGGACATTGGCATCATTAATTGATT
1 ACATGTAAGACCATGTCTAGGACAGTGGCATCATTAATAGATA
* * * *
64493918 TCGTGTAAGGCCCTGTCTAGGACAGTGGCATCATT-ATGAGATA
1 ACATGTAAGACCATGTCTAGGACAGTGGCATCATTAAT-AGATA
64493961 ACATGTAAGACCAT
1 ACATGTAAGACCAT
64493975 ATTTGAGATA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
42 2 0.05
43 42 0.95
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTAGGACAGTGGCATCATTAATAGATA
Found at i:64497196 original size:29 final size:29
Alignment explanation
Indices: 64497162--64497264 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
64497152 TAATCAGCCG
** *
64497162 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
64497191 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
64497220 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
64497249 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64497265 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:64504930 original size:29 final size:29
Alignment explanation
Indices: 64504896--64504998 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
64504886 TAATCAGCCG
** *
64504896 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
64504925 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
64504954 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
64504983 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64504999 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:64511510 original size:29 final size:29
Alignment explanation
Indices: 64511471--64511549 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
64511461 CTTAATAATC
*
64511471 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64511501 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64511530 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64511550 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64512207 original size:2 final size:2
Alignment explanation
Indices: 64512189--64512222 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
64512179 TGATGGCCGA
* *
64512189 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64512223 CAACTATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64519585 original size:29 final size:29
Alignment explanation
Indices: 64519551--64519623 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
64519541 AATCAACCAT
* *
64519551 GCACACTTAGTGCCATGTACTTT-AAACTC
1 GCACACTTAGTGCCATGCA-TTTCAAACCC
*
64519580 GCACACTTAGTGCCATGCATTTCAAGCCC
1 GCACACTTAGTGCCATGCATTTCAAACCC
64519609 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
64519624 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCATTTCAAACCC
Found at i:64527389 original size:46 final size:47
Alignment explanation
Indices: 64527257--64527465 Score: 150
Period size: 46 Copynumber: 4.5 Consensus size: 47
64527247 GATGTTATAG
*
64527257 CCCAGACATGGTCTTACATTAG--CTCATCTC-ATAGTCGATGCATGT
1 CCCAGACAT-GTCTTACATTAGCTCTCATCTCAATAGCCGATGCATGT
** * * * * **
64527302 CCCAGACACATCTTAAATTGGCT-TACATCTCGA-GGTTGATGCATGT
1 CCCAGACATGTCTTACATTAGCTCT-CATCTCAATAGCCGATGCATGT
*
64527348 CCCAGACATGTCTTACATTAGCTCTCGTCTCAAT-GCCGATGCCATGT
1 CCCAGACATGTCTTACATTAGCTCTCATCTCAATAGCCGATG-CATGT
* * *
64527395 CCCAAACATGGTCTTACACTGGCTCTCA--T-AATATGGCCGATGCATGT
1 CCCAGACAT-GTCTTACATTAGCTCTCATCTCAATA--GCCGATGCATGT
* *
64527442 TCCAAACATGTCTTAC-TCTAGCTC
1 CCCAGACATGTCTTACAT-TAGCTC
64527466 ACAATAACGT
Statistics
Matches: 131, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
44 9 0.07
45 12 0.09
46 60 0.46
47 28 0.21
48 22 0.17
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (47 bp):
CCCAGACATGTCTTACATTAGCTCTCATCTCAATAGCCGATGCATGT
Found at i:64527404 original size:47 final size:46
Alignment explanation
Indices: 64527339--64527465 Score: 134
Period size: 47 Copynumber: 2.7 Consensus size: 46
64527329 TCTCGAGGTT
* * *
64527339 GATGCATGTCCCAGACATGTCTTACATTAGCTCTCGT-CTCAAT-GCC
1 GATGCATGTCCCAAACATGTCTTACATTAGCTCTCATAAT--ATGGCC
* *
64527385 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACATTAGCTCTCATAATATGGCC
*
64527433 GATGCATGTTCCAAACATGTCTTAC-TCTAGCTC
1 GATGCATGTCCCAAACATGTCTTACAT-TAGCTC
64527466 ACAATAACGT
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
46 16 0.24
47 28 0.41
48 23 0.34
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACATTAGCTCTCATAATATGGCC
Found at i:64530552 original size:40 final size:40
Alignment explanation
Indices: 64530497--64530621 Score: 155
Period size: 40 Copynumber: 3.1 Consensus size: 40
64530487 GAGACTTAAC
64530497 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* **
64530537 CCGGATTTAGTAACTCGTATGAATGCCTTCGGATCTTAGT
1 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* * * *
64530577 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGC
1 CCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGT
64530617 CCGGA
1 CCGGA
64530622 CATCATTCGA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 65 0.89
41 8 0.11
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
Found at i:64531336 original size:2 final size:2
Alignment explanation
Indices: 64531329--64531360 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
64531319 ATGTACAAAC
64531329 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64531361 GTGCAAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64537802 original size:19 final size:20
Alignment explanation
Indices: 64537778--64537815 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64537768 GGTATCACCA
64537778 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64537797 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64537816 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64538622 original size:30 final size:29
Alignment explanation
Indices: 64538588--64538645 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
64538578 ATTTAATATG
64538588 AACTTTAAAAAAATTACACTTTTGCCCCTC
1 AACTTTAAAAAAATTACACTTTT-CCCCTC
*** *
64538618 AACTTTTGCATAATTACACTTTTCCCCT
1 AACTTTAAAAAAATTACACTTTTCCCCT
64538646 AGGCTCGGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (29 bp):
AACTTTAAAAAAATTACACTTTTCCCCTC
Found at i:64541300 original size:45 final size:44
Alignment explanation
Indices: 64541250--64541495 Score: 350
Period size: 45 Copynumber: 5.5 Consensus size: 44
64541240 CATTTCACCA
*
64541250 GCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCATCG
1 GCATCATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCA-CG
* *
64541295 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACTG
1 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC-G
* * *
64541340 GCATCATAGCCTGCTAGGCTTAAAGGTCCGAATAGTATTTCATCG
1 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCA-CG
* *
64541385 GCATCATAGCCTGCTAGGCTCAAAAGCCCGAATAATATCTCACTG
1 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC-G
*
64541430 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCG
1 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCA-CG
64541475 GCATCATAGCCTGCTAGGCTC
1 GCATCATAGCCTGCTAGGCTC
64541496 GAAATCCGAT
Statistics
Matches: 182, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
44 5 0.03
45 175 0.96
46 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (44 bp):
GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACG
Found at i:64541408 original size:90 final size:90
Alignment explanation
Indices: 64541250--64541495 Score: 413
Period size: 90 Copynumber: 2.7 Consensus size: 90
64541240 CATTTCACCA
* * *
64541250 GCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCATCGGCATTATAGCCTGCTAGGC
1 GCATCATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATTTCATCGGCATCATAGCCTGCTAGGC
*
64541314 TCAAAGGCCCGAATAATATCTCACTG
65 TCAAAAGCCCGAATAATATCTCACTG
* *
64541340 GCATCATAGCCTGCTAGGCTTAAAGGTCCGAATAGTATTTCATCGGCATCATAGCCTGCTAGGCT
1 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCATCGGCATCATAGCCTGCTAGGCT
64541405 CAAAAGCCCGAATAATATCTCACTG
66 CAAAAGCCCGAATAATATCTCACTG
*
64541430 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATAGCCTGCTAGGCT
1 GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCATCGGCATCATAGCCTGCTAGGCT
64541495 C
66 C
64541496 GAAATCCGAT
Statistics
Matches: 146, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
89 3 0.02
90 143 0.98
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (90 bp):
GCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCATCGGCATCATAGCCTGCTAGGCT
CAAAAGCCCGAATAATATCTCACTG
Found at i:64541483 original size:135 final size:135
Alignment explanation
Indices: 64541241--64541494 Score: 411
Period size: 135 Copynumber: 1.9 Consensus size: 135
64541231 GCCCGATATC
* * * *
64541241 ATTTCACCAGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCATCGGCATTATAGCC
1 ATTTCACCAGCATCATAGCCTGCTAGGCTCAAAAGCCCGAATAATATCTCATCGGCATCATAGCC
*
64541306 TGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATAGCCTGCTAGGCTTAAAGGTCCGA
66 TGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATCATAGCCTGCTAGGCTTAAAGGTCCGA
64541371 ATAGT
131 ATAGT
* *
64541376 ATTTCATCGGCATCATAGCCTGCTAGGCTCAAAAGCCCGAATAATATCTCA-CTGGCATCATAGC
1 ATTTCACCAGCATCATAGCCTGCTAGGCTCAAAAGCCCGAATAATATCTCATC-GGCATCATAGC
* *
64541440 CTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATAGCCTGCTAGGCT
65 CTGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATCATAGCCTGCTAGGCT
64541495 CGAAATCCGA
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
134 1 0.01
135 108 0.99
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (135 bp):
ATTTCACCAGCATCATAGCCTGCTAGGCTCAAAAGCCCGAATAATATCTCATCGGCATCATAGCC
TGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATCATAGCCTGCTAGGCTTAAAGGTCCGA
ATAGT
Found at i:64543361 original size:26 final size:27
Alignment explanation
Indices: 64543309--64543361 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
64543299 TTGAATTCTG
* *
64543309 GCATGCATTCGAACACTTAAAAATTCA
1 GCATACATTCAAACACTTAAAAATTCA
*
64543336 GCATACATTCAAACA-TTAAAATTTCA
1 GCATACATTCAAACACTTAAAAATTCA
64543362 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
GCATACATTCAAACACTTAAAAATTCA
Found at i:64546505 original size:47 final size:47
Alignment explanation
Indices: 64546452--64546657 Score: 241
Period size: 47 Copynumber: 4.6 Consensus size: 47
64546442 TGTATAACTG
*
64546452 TGGCATATCCACTTAGCACCATGTTAATGAATCAATATATGTAACCA
1 TGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCA
* **
64546499 TGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-TAACTG
1 TGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCA
*
64546537 TGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCA
1 TGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCA
* * * * *
64546584 TGGCATATCCAGTTAGCACCACGTTACATGTATCAATATGTGTAATCG
1 TGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCA
*
64546632 TGGTATATCCACTTAGCACCACGTTA
1 TGGCATATCCACTTAGCACCACGTTA
64546658 CACGTATAAC
Statistics
Matches: 133, Mismatches: 16, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
38 26 0.20
39 2 0.02
40 3 0.02
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.02
46 2 0.02
47 50 0.38
48 41 0.31
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (47 bp):
TGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCA
Found at i:64546554 original size:38 final size:40
Alignment explanation
Indices: 64546493--64546694 Score: 144
Period size: 38 Copynumber: 4.8 Consensus size: 40
64546483 TCAATATATG
* *
64546493 TAACCATGGCATATCCACTTAGCACCACGTTACATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATA
*
64546531 TAACTGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATG------TATA
* * *
64546576 TGTAACCATGGCATATCCAGTTAGCACCACGTTACATGTATCAATA
1 --TAACCGTGGTATATCCACTTAGCACCACGTTACATG--T--ATA
* *
64546622 TGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACG--TA
1 ----TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATA
*
64546664 TAACCGTGGTATATTCACTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
64546695 TTTTCATTTT
Statistics
Matches: 134, Mismatches: 15, Indels: 30
0.75 0.08 0.17
Matches are distributed among these distances:
37 3 0.02
38 58 0.43
42 2 0.01
43 1 0.01
44 3 0.02
46 3 0.02
47 28 0.21
48 36 0.27
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (40 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATA
Found at i:64546582 original size:85 final size:85
Alignment explanation
Indices: 64546439--64546616 Score: 320
Period size: 85 Copynumber: 2.1 Consensus size: 85
64546429 TTTCAAATTA
*
64546439 ACATGTATAACTGTGGCATATCCACTTAGCACCATGTTAATGAATCAATATATGTAACCATGGCA
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCA
64546504 TATCCACTTAGCACCACGTT
66 TATCCACTTAGCACCACGTT
* *
64546524 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCA
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCA
*
64546589 TATCCAGTTAGCACCACGTT
66 TATCCACTTAGCACCACGTT
64546609 ACATGTAT
1 ACATGTAT
64546617 CAATATGTGT
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 88 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (85 bp):
ACATGTATAACTGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCA
TATCCACTTAGCACCACGTT
Found at i:64546640 original size:48 final size:48
Alignment explanation
Indices: 64546531--64546664 Score: 189
Period size: 48 Copynumber: 2.8 Consensus size: 48
64546521 GTTACATGTT
* *
64546531 TAACTGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * * *
64546578 TAACCATGGCATATCCAGTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
64546626 TAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
64546665 AACCGTGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 28 0.37
48 47 0.63
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:64546642 original size:133 final size:132
Alignment explanation
Indices: 64546452--64546694 Score: 378
Period size: 133 Copynumber: 1.8 Consensus size: 132
64546442 TGTATAACTG
*
64546452 TGGCATATCCACTTAGCACCATGTTAATGAATCAATATATGTAACCATGGCATATCCACTTAGCA
1 TGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCATATCCACTTAGCA
* * *
64546517 CCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
66 CCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
64546582 CA
131 CA
* * * * * *
64546584 TGGCATATCCAGTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGC
1 TGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCATGGCATATCCACTTAGC
*
64546649 ACCACGTTACACGTATAACCGTGGTATATTCACTTAGCACCACGTT
65 ACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
64546695 TTTTCATTTT
Statistics
Matches: 99, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
132 24 0.24
133 75 0.76
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (132 bp):
TGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCATATCCACTTAGCA
CCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
CA
Found at i:64547664 original size:27 final size:27
Alignment explanation
Indices: 64547624--64547782 Score: 158
Period size: 27 Copynumber: 5.9 Consensus size: 27
64547614 AAATGTTACA
*
64547624 TAAAATGATTGTTTTGCCCTTGTGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* *
64547651 TGAAATGATTGTTTTTCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * * *
64547678 TAAAATAAATATTCTGCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * *
64547705 TAAAATGGTTGTTTTGCCTTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * *
64547732 TAAAATGACTATTTTGCCCTT-TTATGG
1 TAAAATGATTGTTTTGCCCTTATGA-GG
* * *
64547759 TAAGATGATTGTTTTACCCCTATG
1 TAAAATGATTGTTTTGCCCTTATG
64547783 TGATGTATGT
Statistics
Matches: 102, Mismatches: 28, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
26 1 0.01
27 100 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGAGG
Found at i:64548116 original size:17 final size:18
Alignment explanation
Indices: 64548084--64548123 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
64548074 GGACGTTGCA
*
64548084 TACTGTTTATTGTTACTG
1 TACTGTTTACTGTTACTG
64548102 TACTG-TTACTGTTACTG
1 TACTGTTTACTGTTACTG
*
64548119 CACTG
1 TACTG
64548124 GGCCAAGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.47
Consensus pattern (18 bp):
TACTGTTTACTGTTACTG
Found at i:64551066 original size:2 final size:2
Alignment explanation
Indices: 64551059--64551088 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
64551049 CGGCTCTTGC
64551059 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64551089 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64556702 original size:40 final size:40
Alignment explanation
Indices: 64556656--64556863 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
64556646 TGAATGATAC
* * *
64556656 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
64556696 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
64556736 CCGGGCTAAGACTCGAAGGCATTCGTGCAAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
64556776 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
64556816 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
64556856 CC-GGCTAA
1 CCGGGCTAA
64556864 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 136 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:64560735 original size:71 final size:71
Alignment explanation
Indices: 64560630--64560792 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
64560620 GAGATGTATC
64560630 CCATGTAGACAAGAG-GCTACGTGAAAGATAAATGTAGCTAGGTCGCATACGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATACGTGATTCCAAGTGA
64560694 AGGACA
66 AGGACA
*
64560700 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATACGTGATTCCAAGTGA
64560765 AGGACA
66 AGGACA
64560771 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64560793 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 15 0.16
71 76 0.84
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATACGTGATTCCAAGTGA
AGGACA
Found at i:64570703 original size:80 final size:80
Alignment explanation
Indices: 64570619--64570767 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64570609 TATGGTAACC
* * * *
64570619 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64570683 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64570699 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64570764 CCGG
66 CCGG
64570768 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Done.