Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 216 of 328
Found at i:64849382 original size:19 final size:18
Alignment explanation
Indices: 64849345--64849388 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
64849335 ATACATACAG
64849345 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
64849362 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
64849381 TACTAATT
1 TAATAATT
64849389 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:64851455 original size:40 final size:39
Alignment explanation
Indices: 64851344--64851494 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
64851334 TATAACATGT
* ** *
64851344 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
64851384 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
64851424 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
64851464 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
64851495 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:64851478 original size:80 final size:79
Alignment explanation
Indices: 64851344--64851494 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
64851334 TATAACATGT
*
64851344 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
64851409 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
64851424 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
64851487 CCGGATAT
64 CCGGATAT
64851495 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:64859419 original size:40 final size:40
Alignment explanation
Indices: 64859331--64859442 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
64859321 TTAAAGAATT
* * *
64859331 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* ***
64859371 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* * *
64859411 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
64859443 CATTCAATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
Found at i:64864168 original size:80 final size:80
Alignment explanation
Indices: 64864084--64864232 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64864074 TATGGTAACC
* * * *
64864084 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64864148 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64864164 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64864229 CCGG
66 CCGG
64864233 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64864174 original size:40 final size:38
Alignment explanation
Indices: 64864125--64864232 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64864115 ATCACGATTT
*
64864125 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
64864165 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
64864205 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64864233 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:64866109 original size:45 final size:45
Alignment explanation
Indices: 64865960--64866125 Score: 167
Period size: 45 Copynumber: 3.6 Consensus size: 45
64865950 TCCGAACTTT
* * * * *
64865960 GTTGAGTTGAGTCCGAATTCACTTATGGATGCGAGCGTCCAAACTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGG-TGCGAACGCCCGAGCTC
** * *
64866006 GTTGAGTTGAGTCCGAGTTCA-AGA-GATG-TAACTAGGCATCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGTGCGAAC---GC--CCGAGCTC
64866053 GTTGAGTTGAGTCCGAGTTCACTTATGGTGCGAACGCCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGTGCGAACGCCCGAGCTC
*
64866098 ATTGAGTTGAGTCCGAGTTCACTTATGG
1 GTTGAGTTGAGTCCGAGTTCACTTATGG
64866126 GCGGGTTCAT
Statistics
Matches: 98, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 1 0.01
45 37 0.38
46 20 0.20
47 29 0.30
48 1 0.01
49 3 0.03
50 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (45 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGTGCGAACGCCCGAGCTC
Found at i:64869088 original size:15 final size:15
Alignment explanation
Indices: 64869018--64869093 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
64869008 CATAGTATCG
*
64869018 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
* *
64869033 TATCCTGGATCTCTT
1 TATCTTGGATTTCTT
64869048 TAT-TCTGGA-TTCTT
1 TATCT-TGGATTTCTT
* *
64869062 TAT-TTGGGTTTCTC
1 TATCTTGGATTTCTT
64869076 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
64869091 TAT
1 TAT
64869094 TCGGTTTTCT
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
13 3 0.06
14 15 0.31
15 31 0.63
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:64869089 original size:29 final size:29
Alignment explanation
Indices: 64869018--64869103 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 29
64869008 CATAGTATCG
* * * *
64869018 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTAT-TTGGATTTCTC
*
64869048 TAT-TCTGGA-TTCTTTATTTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTTGGATTTCTC
* *
64869076 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTTGGATTTCT
64869104 TGTTATCTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
28 14 0.30
29 26 0.57
30 6 0.13
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTTGGATTTCTC
Found at i:64873349 original size:29 final size:29
Alignment explanation
Indices: 64873321--64873422 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
64873311 CCTCCGAGCT
** * * *
64873321 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64873350 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64873379 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64873408 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
64873423 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64881205 original size:29 final size:29
Alignment explanation
Indices: 64881177--64881278 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
64881167 CCTCCGAGCT
** * * *
64881177 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64881206 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64881235 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64881264 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
64881279 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64884080 original size:27 final size:27
Alignment explanation
Indices: 64883986--64884143 Score: 145
Period size: 27 Copynumber: 5.8 Consensus size: 27
64883976 CAGAATTGAT
* * **
64883986 AAATGACTATTTTTCCCCATATATGGTA
1 AAATGACTGTTTTT-CCCTTATGGGGTA
* *
64884014 AAATGACTGTTTTGCCTTTATGGGGTA
1 AAATGACTGTTTTTCCCTTATGGGGTA
*
64884041 AAATGACTATTTTTCCCTTATGGGGTA
1 AAATGACTGTTTTTCCCTTATGGGGTA
* * * *
64884068 AAATGATTGTTTTACCCTGATGTGGTA
1 AAATGACTGTTTTTCCCTTATGGGGTA
* * **
64884095 AAATGATTGTTTTTCCCTTTTATGGTA
1 AAATGACTGTTTTTCCCTTATGGGGTA
* * *
64884122 AGATGACTGTTTTACCCCTATG
1 AAATGACTGTTTTTCCCTTATG
64884144 TGATGTATGT
Statistics
Matches: 106, Mismatches: 24, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
27 94 0.89
28 12 0.11
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (27 bp):
AAATGACTGTTTTTCCCTTATGGGGTA
Found at i:64884095 original size:54 final size:54
Alignment explanation
Indices: 64883986--64884138 Score: 189
Period size: 54 Copynumber: 2.8 Consensus size: 54
64883976 CAGAATTGAT
* * * *
64883986 AAATGACTATTTTTCCCCATATATGGTAAAATGACTGTTTTGCCTTTATGGGGTA
1 AAATGACTATTTTT-CCCTTATATGGTAAAATGACTGTTTTACCCTGATGGGGTA
** * *
64884041 AAATGACTATTTTTCCCTTATGGGGTAAAATGATTGTTTTACCCTGATGTGGTA
1 AAATGACTATTTTTCCCTTATATGGTAAAATGACTGTTTTACCCTGATGGGGTA
* * * *
64884095 AAATGATTGTTTTTCCCTTTTATGGTAAGATGACTGTTTTACCC
1 AAATGACTATTTTTCCCTTATATGGTAAAATGACTGTTTTACCC
64884139 CTATGTGATG
Statistics
Matches: 83, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
54 69 0.83
55 14 0.17
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.42
Consensus pattern (54 bp):
AAATGACTATTTTTCCCTTATATGGTAAAATGACTGTTTTACCCTGATGGGGTA
Found at i:64884471 original size:18 final size:18
Alignment explanation
Indices: 64884422--64884472 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
64884412 TTGCATATTG
* *
64884422 TTTACTGTTACTGCACTG
1 TTTACTGTTACTGTACTA
64884440 TTTACTGTTACTGTACTA
1 TTTACTGTTACTGTACTA
64884458 TTTACTGTTACTGTA
1 TTTACTGTTACTGTA
64884473 ATGGGCCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (18 bp):
TTTACTGTTACTGTACTA
Found at i:64887013 original size:27 final size:27
Alignment explanation
Indices: 64886972--64887154 Score: 160
Period size: 27 Copynumber: 6.8 Consensus size: 27
64886962 CCTCAATTTT
**
64886972 TAAAATTACCGAAATACCCCTAGTTTG
1 TAAAATTACTAAAATACCCCTAGTTTG
64886999 TAAAATTACTAAAATA-CCCTCAGTTTG
1 TAAAATTACTAAAATACCCCT-AGTTTG
* * * *
64887026 TAAAATTA-TCGAAATACCCTTGGATTG
1 TAAAATTACT-AAAATACCCCTAGTTTG
* *
64887053 TAAAATTACCAAAATACCCC-CGATTTG
1 TAAAATTACTAAAATACCCCTAG-TTTG
* *
64887080 TAAAATTACTGAAATACCCCCAGTTTG
1 TAAAATTACTAAAATACCCCTAGTTTG
* * * *
64887107 TAAAATTA-TCAAAATA-TCCTTGTAGTA
1 TAAAATTACT-AAAATACCCCTAGT-TTG
64887134 TAAAATTACTAAAATACCCCT
1 TAAAATTACTAAAATACCCCT
64887155 GTAGGGTAAA
Statistics
Matches: 125, Mismatches: 21, Indels: 19
0.76 0.13 0.12
Matches are distributed among these distances:
26 11 0.09
27 106 0.85
28 8 0.06
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACTAAAATACCCCTAGTTTG
Found at i:64887044 original size:54 final size:53
Alignment explanation
Indices: 64886962--64887122 Score: 191
Period size: 54 Copynumber: 3.0 Consensus size: 53
64886952 GTCGTTAAGA
* *
64886962 CCTCAATTTTTAAAATTACCGAAATACCCCTAGTTTGTAAAATTACTAAAATAC
1 CCTCAGTTTGTAAAATTA-CGAAATACCCCTAGTTTGTAAAATTACTAAAATAC
* * * *
64887016 CCTCAGTTTGTAAAATTATCGAAATACCCTTGGATTGTAAAATTACCAAAATAC
1 CCTCAGTTTGTAAAATTA-CGAAATACCCCTAGTTTGTAAAATTACTAAAATAC
* *
64887070 CC-CCGATTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTA-TCAAAATA
1 CCTCAG-TTTGTAAAATTAC-GAAATACCCCTAGTTTGTAAAATTACT-AAAATA
64887123 TCCTTGTAGT
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.03
54 88 0.97
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (53 bp):
CCTCAGTTTGTAAAATTACGAAATACCCCTAGTTTGTAAAATTACTAAAATAC
Found at i:64887107 original size:81 final size:82
Alignment explanation
Indices: 64886972--64887153 Score: 260
Period size: 81 Copynumber: 2.2 Consensus size: 82
64886962 CCTCAATTTT
* * *
64886972 TAAAATTACCGAAATA-CCCCTAGTTTGTAAAATTACTAAAATACCCTCAGTTTGTAAAATTATC
1 TAAAATTACCAAAATACCCCCGAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTATC
* * *
64887036 GAAATACCCTTGGATTG
66 AAAATACCCTTGGAGTA
*
64887053 TAAAATTACCAAAATACCCCCGA-TTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTATC
1 TAAAATTACCAAAATACCCCCGAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTATC
* *
64887117 AAAATATCCTTGTAGTA
66 AAAATACCCTTGGAGTA
*
64887134 TAAAATTACTAAAATACCCC
1 TAAAATTACCAAAATACCCC
64887154 TGTAGGGTAA
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 85 0.94
82 5 0.06
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (82 bp):
TAAAATTACCAAAATACCCCCGAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTATC
AAAATACCCTTGGAGTA
Found at i:64887138 original size:54 final size:53
Alignment explanation
Indices: 64886972--64887154 Score: 183
Period size: 54 Copynumber: 3.4 Consensus size: 53
64886962 CCTCAATTTT
*
64886972 TAAAATTACCGAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTCAGT-TTG
1 TAAAATTACTGAAATACCCCTAGTTTGTAAAATTAC-AAAATACCCT-AGTATTG
* * * **
64887026 TAAAATTA-TCGAAATACCCTTGGATTGTAAAATTACCAAAATACCCCCG-ATTTG
1 TAAAATTACT-GAAATACCCCTAGTTTGTAAAATTA-CAAAATACCCTAGTA-TTG
* * * * *
64887080 TAAAATTACTGAAATACCCCCAGTTTGTAAAATTATCAAAATATCCTTGTAGTA
1 TAAAATTACTGAAATACCCCTAGTTTGTAAAATTA-CAAAATACCCTAGTATTG
*
64887134 TAAAATTACTAAAATACCCCT
1 TAAAATTACTGAAATACCCCT
64887155 GTAGGGTAAA
Statistics
Matches: 105, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
53 1 0.01
54 101 0.96
55 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TAAAATTACTGAAATACCCCTAGTTTGTAAAATTACAAAATACCCTAGTATTG
Found at i:64896029 original size:714 final size:713
Alignment explanation
Indices: 64894606--64897394 Score: 3513
Period size: 714 Copynumber: 3.9 Consensus size: 713
64894596 GGCTGTTACA
* *
64894606 GCTACGGAATGCAAATACGGACATTTTGATGTTTAATATAT-AAATTATGGATGCATGTTGAAGT
1 GCTATGGAATGCAAATATGGACATTTTGATGTTTAATAT-TGAAATTATGGATGCATGTTGAAGT
* * * * * *
64894670 GGTATGTGATTGAGTATGTGGAATGCGCAATTTTGCTAGAATTTTTACAAAATTATACA-ATGGT
65 GGTATGTGATTGAGTATGTAGAATGCCCTATTTTGCTTGAATTTTTGCAGAATTATACAGA-GGT
** * * *
64894734 ATTAATAATCGAGGCATACAG-ATCGATACTTCTAAATTGAAACGAATATGTAGGAAACAGTTGC
129 ATCGATAATCG-GGCATA-TGTATCGATACTTCTAAGTTGAAACGAATGTGTAGGAAACAGTTGC
** * * * *
64894798 TCATTTAAGTATCGATACCAATTCTCGAGTATCGATACTTTA-GGTAAAAATATAGATAATTTTG
192 TCATTTTGGTATCGATACCAGTTCTCGAGTATCGATAC-TCAGGGTAAAAATATAAATACTTTTG
* * * * * * * ** * * *
64894862 AATTGTATCGATAAATTGCTAGATTTCGAATTTTAAATAAAAGGAAATTTTTAAAAAGGTATCGA
256 AATTGTATCGATAAATTGCTGGGTTTTGGATTTTGAAGAAGATCAAAATGTTAAAAAGGTTTCGA
** **
64894927 TTTTTGAAACAATATCAATACCCATTTTGAGAAATATTGATTTCCATTTAGATGTTCTCATTT-A
321 TTTTCCAAACGGTATCAATACCCATTTTGAGAAATATTGATTTCCATTTAGATGTTCTCATTTAA
* * *
64894991 ---ATG--------TTTATTGGCAGTTTTTTCCCGATCATTCACTAAGCTTGTTTAAGTTGC-CA
386 TGTATGATATCATATTTATTGGTAGTTTTTTCTCGATCATTCACTAAGCTTGTTTAAGCT-CACA
* * * * * *
64895044 CACTCTTTTTTGAACCTTTGCAGTTAGTTAATGTTTCCGGTGTGGGCTGTACGAAATTCTAAGGA
450 CACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGTGTGGGCGGTGCGAAATTCCAAGGA
* * * * *
64895109 AGTGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGACATTATTGCTATTATTTTTTAATTGTGGG
515 AATGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTAGG
64895174 AATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCATGATGTTTTAAATGATTATTTTGAT
580 AATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCATGATGTTTTAAATGATTATTTTGAT
** * * * *
64895239 TTTAATACTCTTACATTCGTGGATGTTGTTATTAGTTTATTGGTTTGCTTGGTTGATATTATTTT
645 TTTAATACTCTTAGGTTCGTGAACGTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTA
64895304 TATT
710 TATT
* * * ** *
64895308 ACTATGGACTGCAAATATGGAAATTTTGATGTTTAATATTGATGTTATGGATGCATGTTGAAGTT
1 GCTATGGAATGCAAATATGGACATTTTGATGTTTAATATTGAAATTATGGATGCATGTTGAAGTG
* * * *
64895373 GTATGTGATTGAGTATGTGGAATACCCTATTTTGCTTGAATTTTTGCAGAACTATACAGAGATAT
66 GTATGTGATTGAGTATGTAGAATGCCCTATTTTGCTTGAATTTTTGCAGAATTATACAGAGGTAT
* * * * * *
64895438 TGATAATCGGAGCATATGTATCTATACTTTTGAGTTAAAATGAATGTGTAGGAAACAGTTGCTCA
131 CGATAATCGG-GCATATGTATCGATACTTCTAAGTTGAAACGAATGTGTAGGAAACAGTTGCTCA
* * * * *
64895503 TTTTGGTATCGGTACCAGTTCTCGAGTATTGTTACTCAGGGTAAAAATATAGATACTTTTCAATT
195 TTTTGGTATCGATACCAGTTCTCGAGTATCGATACTCAGGGTAAAAATATAAATACTTTTGAATT
** * *
64895568 GTATCGATAAATCT-CTGGGTTTTTTATTTTGAAGAAGATCAAAATGTTAAAAAGATTTTGATTT
260 GTATCGATAAAT-TGCTGGGTTTTGGATTTTGAAGAAGATCAAAATGTTAAAAAGGTTTCGATTT
* * *
64895632 TCCAAACGGTACCGATACCCATTTAT-AGAAATATTGATTCCCATTTAGATGTTCTCATTTAATG
324 TCCAAACGGTATCAATACCCATTT-TGAGAAATATTGATTTCCATTTAGATGTTCTCATTTAATG
* * * *
64895696 TATGATATCATATTTCTTGGTAGTCTTTTCTCAATCATTCATTAAGCTTGTTTAAGCTCACACAC
388 TATGATATCATATTTATTGGTAGTTTTTTCTCGATCATTCACTAAGCTTGTTTAAGCTCACACAC
* ** * * * *
64895761 TCTTTTCTGAATCTTTGCAGATAACTAGTGTTTCTGGTGTGGACGGTGTGAAATTCCAAGCAAAT
453 TCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGTGTGGGCGGTGCGAAATTCCAAGGAAAT
* *
64895826 GATCCAACTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTAAGAAT
518 GATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTAGGAAT
* * *
64895891 AAGACAATGTGGTAGAATTGTCT-GTTGGTTATTAGCATGATTTTTTAAATGATTATTTTGATTT
583 AAGACAATGTGGTAGAATTGT-TGGTTGATTATTATCATGATGTTTTAAATGATTATTTTGATTT
* * *
64895955 TAATACTCTTAGGTTCGTGAAGGTTGTTATTAGTTTATTGGTTTGTTTGGTTGAAATTATTGATA
647 TAATACTCTTAGGTTCGTGAACGTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATA
64896020 TT
712 TT
* * * *
64896022 GCTATGGAATTCTAATATGGACATTTTGATGTTTAATATTGAAATTAT---TG-ATATTGACGTG
1 GCTATGGAATGCAAATATGGACATTTTGATGTTTAATATTGAAATTATGGATGCATGTTGAAGTG
* * * * * *
64896083 GTCTATGATTGAGTATGTAGAGTGCCCTATTTTTCTGGAATTTTTGCAGAATTATACGGAGGTAT
66 GTATGTGATTGAGTATGTAGAATGCCCTATTTTGCTTGAATTTTTGCAGAATTATACAGAGGTAT
* * * * * * * *
64896148 CGGTAATTAGGGCATATGTATCAATACTTCTAAGTTGAAATGTATGTGCAAGAAATAGTTGCTCA
131 CGATAA-TCGGGCATATGTATCGATACTTCTAAGTTGAAACGAATGTGTAGGAAACAGTTGCTCA
** * * *
64896213 TTTTTCTATTGATATCAGTTCTCGAGTATCGATACTTAGGGTAAAAATATAAATACTTTTGAATT
195 TTTTGGTATCGATACCAGTTCTCGAGTATCGATACTCAGGGTAAAAATATAAATACTTTTGAATT
* * * * *
64896278 GCATCGATAAATTGTTGGGTTTTGGATTTTGAAGAAGATCAGAATGGTAAAAAGG-TTCCAGTTT
260 GTATCGATAAATTGCTGGGTTTTGGATTTTGAAGAAGATCAAAATGTTAAAAAGGTTTCGA-TTT
* *
64896342 TCCAAACGGTATCAATACCCATTTTGAGAAATATCGATTTCCATTTAGATGTTCTCATATAATGT
324 TCCAAACGGTATCAATACCCATTTTGAGAAATATTGATTTCCATTTAGATGTTCTCATTTAATGT
*
64896407 ATGATATCATGTTTATTGGTAGTTTTTTC-CTGATCATTCACTAAGCTTGTTTAAGCTCACACAC
389 ATGATATCATATTTATTGGTAGTTTTTTCTC-GATCATTCACTAAGCTTGTTTAAGCTCACACAC
* * *** * *
64896471 TCTTTTTTGAACCGTTGCAGATAGTTAGTGTTTTTAGTGTGGGCGGTGCAAAATTCCAAGGAAGT
453 TCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGTGTGGGCGGTGCGAAATTCCAAGGAAAT
* * * *
64896536 GATCCAAGTTAGGCTTAGTGTTTAAGTATGTGATTTTATTGTTATTATTTTTGAACTGTAGGAAT
518 GATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTAGGAAT
* * * **
64896601 AAGACAATATGGTAAAATTCTTGGTTGATTATTATCATGATAATTTAAATGATTATTTTGATTTT
583 AAGACAATGTGGTAGAATTGTTGGTTGATTATTATCATGATGTTTTAAATGATTATTTTGATTTT
* * *
64896666 AATACTCTTAGGTTCCT-AGACGTTGTTATTAGTTTATTGGTTTGGTTGGTTAAAATTATTTATA
648 AATACTCTTAGGTTCGTGA-ACGTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATA
64896730 TT
712 TT
* *
64896732 GCTATGGACTG-AGAATATGGACATTTTGATGTTTAATATTGAAGTTATGGATGCATGTTGAAGT
1 GCTATGGAATGCA-AATATGGACATTTTGATGTTTAATATTGAAATTATGGATGCATGTTGAAGT
* * * *
64896796 GGTATGTGATTAAGTATGTAGTATGCCCTATTTTGCTTGATTTTTTGCAGAATTATGCAGAGGTA
65 GGTATGTGATTGAGTATGTAGAATGCCCTATTTTGCTTGAATTTTTGCAGAATTATACAGAGGTA
* *
64896861 TCGATAATCAGGGCATATGTATCGATACTTCTGAGTTGAAACAAATGTGTAGGAAACAGTTGCTC
130 TCGATAATC-GGGCATATGTATCGATACTTCTAAGTTGAAACGAATGTGTAGGAAACAGTTGCTC
* * *
64896926 ATTTTGGTATTGATACCAGTTCTCGAGTATCAACACTC-GAGGTAAAAATATAAATACTTTTGAA
194 ATTTTGGTATCGATACCAGTTCTCGAGTATCGATACTCAG-GGTAAAAATATAAATACTTTTGAA
* * * *
64896990 TTGTATTGATAAATTGTTGGGTTTTGGATTTTGAAGAAGATTAGAATGTTAAAAAGG-TTCTGAT
258 TTGTATCGATAAATTGCTGGGTTTTGGATTTTGAAGAAGATCAAAATGTTAAAAAGGTTTC-GAT
* * *
64897054 TTTCCAAACGGTATCGAT-CTCCATTTTGAGAAATATTGATATCCAATTAGATGTTCTCATTTAA
322 TTTCCAAACGGTATCAATAC-CCATTTTGAGAAATATTGATTTCCATTTAGATGTTCTCATTTAA
* * ** *
64897118 TGTATGATATCATGTTTATTGTTAGTTTTTTCTTTATCATTCACTGAGCTTGTTTAAGCTCACAC
386 TGTATGATATCATATTTATTGGTAGTTTTTTCTCGATCATTCACTAAGCTTGTTTAAGCTCACAC
*
64897183 ACTCTTTTCTGAACCTTTACAGATAGTTAGTGTTTCCGGTGTGGGCGGTGC-AGAATTCCAA-GA
451 ACTCTTTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGTGTGGGCGGTGCGA-AATTCCAAGGA
* * * * *
64897246 AAGTGATCCTAGTTAGGCTTAGTGTTTGAGAAGGTTATATTATTGTTATTATTTTTGAATTGT-G
515 AA-TGATCCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTAG
64897310 CGAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCATGATGTTTTAAATGATTATTTTG
579 -GAATAAGACAATGTGGTAGAATTGTTGGTTGATTATTATCATGATGTTTTAAATGATTATTTTG
64897375 ATTTTAATACTCTTAGGTTC
643 ATTTTAATACTCTTAGGTTC
64897395 ATGGATGTTG
Statistics
Matches: 1797, Mismatches: 249, Indels: 70
0.85 0.12 0.03
Matches are distributed among these distances:
701 5 0.00
702 313 0.17
703 4 0.00
706 3 0.00
709 8 0.00
710 602 0.34
711 5 0.00
713 11 0.01
714 844 0.47
715 2 0.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (713 bp):
GCTATGGAATGCAAATATGGACATTTTGATGTTTAATATTGAAATTATGGATGCATGTTGAAGTG
GTATGTGATTGAGTATGTAGAATGCCCTATTTTGCTTGAATTTTTGCAGAATTATACAGAGGTAT
CGATAATCGGGCATATGTATCGATACTTCTAAGTTGAAACGAATGTGTAGGAAACAGTTGCTCAT
TTTGGTATCGATACCAGTTCTCGAGTATCGATACTCAGGGTAAAAATATAAATACTTTTGAATTG
TATCGATAAATTGCTGGGTTTTGGATTTTGAAGAAGATCAAAATGTTAAAAAGGTTTCGATTTTC
CAAACGGTATCAATACCCATTTTGAGAAATATTGATTTCCATTTAGATGTTCTCATTTAATGTAT
GATATCATATTTATTGGTAGTTTTTTCTCGATCATTCACTAAGCTTGTTTAAGCTCACACACTCT
TTTCTGAACCTTTGCAGATAGTTAGTGTTTCCGGTGTGGGCGGTGCGAAATTCCAAGGAAATGAT
CCAAGTTAGGCTTAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTGTAGGAATAAG
ACAATGTGGTAGAATTGTTGGTTGATTATTATCATGATGTTTTAAATGATTATTTTGATTTTAAT
ACTCTTAGGTTCGTGAACGTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTTATATT
Found at i:64898979 original size:56 final size:56
Alignment explanation
Indices: 64898808--64898995 Score: 277
Period size: 56 Copynumber: 3.4 Consensus size: 56
64898798 ATGTGGCATC
* *
64898808 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCC
1 GATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTCT
64898864 GATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTCT
1 GATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTCT
* * * * * *
64898920 GATATATGCGTGTGAGTAAGTCCACGTTTCATACGTTGGCACCGATATGTGATTTT
1 GATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTCT
* * *
64898976 GATATGTGTTTACGAGTAAG
1 GATATATGTGTGCGAGTAAG
64898996 AACCTATCTG
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGTCCACGTTTAATACGTTGGCATCAATATGTGATTCT
Found at i:64899394 original size:24 final size:24
Alignment explanation
Indices: 64899366--64899414 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
64899356 TATGATGAAT
64899366 TATATTGATACAGGGGTTTAAGTA
1 TATATTGATACAGGGGTTTAAGTA
64899390 TATATTGATACAGGGGTTTAAGTA
1 TATATTGATACAGGGGTTTAAGTA
64899414 T
1 T
64899415 TCAAGTGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (24 bp):
TATATTGATACAGGGGTTTAAGTA
Found at i:64901465 original size:38 final size:38
Alignment explanation
Indices: 64901414--64901490 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
64901404 GGAAAAGTGA
64901414 TTAATTTTGGAAAATACTTTCATTGCGGAAGCTTTGCT
1 TTAATTTTGGAAAATACTTTCATTGCGGAAGCTTTGCT
64901452 TTAATTTTGGAAAATACTTTCATTGCGGAAGCTTTGCT
1 TTAATTTTGGAAAATACTTTCATTGCGGAAGCTTTGCT
64901490 T
1 T
64901491 GTTGTCGTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.43
Consensus pattern (38 bp):
TTAATTTTGGAAAATACTTTCATTGCGGAAGCTTTGCT
Found at i:64902122 original size:27 final size:26
Alignment explanation
Indices: 64902054--64902158 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
64902044 GCGAGGCTGC
* * **
64902054 CAGATATTGTGACGGAGTAACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
64902081 CAGATATTGTGGCAGAGCCACTAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
64902107 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
* *
64902134 CAGATAATTATGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
64902159 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 57 0.85
28 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:64902298 original size:26 final size:27
Alignment explanation
Indices: 64902262--64902337 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
64902252 CAAAAGTAAC
* *
64902262 CCTAGGGGTATAATGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
*
64902288 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
64902316 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
64902338 AGCTACTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.52
28 20 0.48
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:64903813 original size:26 final size:26
Alignment explanation
Indices: 64903782--64903889 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
64903772 TGAAATGCCC
*
64903782 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64903808 ATCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64903834 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
64903860 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64903886 ATCA
1 ATCA
64903890 GTTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64906011 original size:711 final size:710
Alignment explanation
Indices: 64904300--64907071 Score: 3522
Period size: 713 Copynumber: 3.9 Consensus size: 710
64904290 GGTGTTACAT
* * *
64904300 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTTTTGGTATTGTTATGGACTTCAAATATAG
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTGATATTGCTATGGACTTCAAATATAG
* * ** **
64904365 CCATTTTGATATTGAATATTGAAGTTATGGATGCATGTTGAAGTTTTACGTGATTGAGTATGTGG
66 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATATGATTGAGTATGTGG
* * **
64904430 AATGCCATGTTTTGCTGGAATTTTTGTAGAATTATACAGAGGTATTGATAATCAGGGCATACATA
131 AATGCCATGTTTTGCTGGAATTTTTGTAGAATTATACAAAGGTATTGATAATCACGGCATATGTA
* * * * *
64904495 TTGATACTTTTGAGTTGAAA-CAATTGTGCAAGAAACAATAGCTC-TTTGTTGTATCGATACCAA
196 TCGATACTTCTGAGTTGAAATCAA-TGTGCAGGAAACAATAGCTCATTT-TGGTATTGATACCAA
* * *
64904558 TTCTCGAGTATCGATACTTCGGGTAAAAATATAGATAATTTTGAATTGTATAGATAAATTG-TCG
259 TTCTCAAGTATCGATAC-TCGGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAG
* * * * *
64904622 GGTTTGGATTTTGAATAAAAGA-AAAATTTTAAAAAGGTATTGATTTTCCAAACTGTATCGATAC
323 GTTTTAGATTTTGAAGAAAA-ATAGAATGTTAAAAAGGTATTGATTTTCCAAACTGTATCGATAC
** * *
64904686 CTATTTTGAGAAATATTGATACCCATTTAGATATTCTCAGGTAATGTATGATATCATGTTTATTG
387 CTATTTTGAGAAATATCAATACCCATTTAGATGTTCTCATGTAATGTATGATATCATGTTTATTG
* * *
64904751 GTAGTTTTTTCTCGATCATTCACTGAGCTTGTTTAAAGCTTACACGCTCTTTTCTAAA-CTTTGC
452 GTAGTTTTTTCCCGATCATTCACTGAGCTTGTTT-AAGCTCACACACTCTTTTCTAAACCTTTGC
* * * * * * * *
64904815 ATATAGTTAGTGTTTCCAGTATGGGCAGTGTGAAATTCCAAGGAAGTGGTCCAAGTTAGGCTTTG
516 AGATAGTTAGTGTTTCCGGTGTGGGCGGTGAGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAG
* * * *
64904880 TGTTTGAGTAGGTTATATTATTGTTATTATTTTTTAACTGTGGGAATGAGACAATGTGGTAGAAT
581 TGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTG-GGGAATAAGACAATGTGGTAG-AT
* * * *
64904945 TT-TCGGTTGGTTATTATCTTGATGTTTTAAATAATTATTTTGATTTTAATACTCTTAGGTTCGT
644 TTGTTGGTTGATTATTATCTTGATGTTTTAAATGATTATTTTGA--TTAATACTCTTAGGTTCCT
64905009 GGAC
707 GGAC
* * *
64905013 GTTGTTATTAGTTCATTGGTTTGCTTGGTTGAAATTTTTGATATTGCTATGGACTGCAAATATAG
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTGATATTGCTATGGACTTCAAATATAG
* * *
64905078 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATATTGAAGTGGTATGTGATTGAGTTTGTGG
66 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATATGATTGAGTATGTGG
* * *
64905143 AATTCCATGTTTTGCTGGAATTTTTGCATAATTATACAAAGGTATTGATAATCACGGCATATGTA
131 AATGCCATGTTTTGCTGGAATTTTTGTAGAATTATACAAAGGTATTGATAATCACGGCATATGTA
* * * * * * * *
64905208 TTGATACTTTTGAGTTAAAATGAATGTGCAGGAAATAGTAGCTCATTTTGGTATTAATACCAGTT
196 TCGATACTTCTGAGTTGAAATCAATGTGCAGGAAACAATAGCTCATTTTGGTATTGATACCAATT
* * * *
64905273 CTCAAGTATCGCTACTCGGAGTAAAAATATACATACTTTTGAATTGTATCGATAAATTGTTAGGT
261 CTCAAGTATCGATACTCGG-GTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAGGT
* * * * * *
64905338 TTTGGATTTTGAAGAAGATTAGAATGTTAAAAAGGT-TTCGATTTGT-GAAACTGCATTGATACC
325 TTTAGATTTTGAAGAAAAATAGAATGTTAAAAAGGTATT-GATTT-TCCAAACTGTATCGATACC
* * * * * * *
64905401 CATTTTGGGAAATATCGATTCCCATTTAGATGTTCTCATTTAATGTATGATATTATGTTTATCGG
388 TATTTTGAGAAATATCAATACCCATTTAGATGTTCTCATGTAATGTATGATATCATGTTTATTGG
* * * *
64905466 TAGTTTTTTCCCGATCATTCACTGAGCTTGTTTAAGCTCACAAACTCTTTTTTGAACATTTGCAG
453 TAGTTTTTTCCCGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACCTTTGCAG
64905531 ATAGTTAGTGTTTCCGGTGTGGGCGGTGAGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG
518 ATAGTTAGTGTTTCCGGTGTGGGCGGTGAGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG
* *
64905596 TTTGAGTAGGTGATTTTATTGCTATTATTTTTGAACTGGAGGAATAAGACAATATGGTAGATTTG
583 TTTGAGTAGGTGATATTATTGCTATTATTTTTGAACTGG-GGAATAAGACAATGTGGTAGATTTG
* * * *
64905661 TTGGTTGATTATTGT-TATGATGTTTTAAATGATTATTTTGA-TATTACTCTTAGGTTCCTAGAG
647 TTGGTTGATTATTATCT-TGATGTTTTAAATGATTATTTTGATTAATACTCTTAGGTTCCTGGAC
* * *
64905724 GTTGTTATTAGTTTATTGTTTTGCTTGGTTGAAATTATTAATATTGCTATGGA-TTGCAAATATG
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTGATATTGCTATGGACTT-CAAATATA
* * * * **
64905788 GAAATTTTGATGTTGATTATTGAAGTTATGGATGCATTTTGAAGTGGTGTATGATTGAGTCGGTG
65 GACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATATGATTGAGTATGTG
* * * * * *
64905853 GAATGCCCTGTTTTGCTTGAATTTTTGTAGAATTATATAAAGCTATCGATAAACGA-GGCATATG
130 GAATGCCATGTTTTGCTGGAATTTTTGTAGAATTATACAAAGGTATTGATAATC-ACGGCATATG
* * * *
64905917 TATCGATACTTCTGAGTTGGAATGAATGTGTAGGAAACAATTGCTCATTTTGGTATTGATACCAA
194 TATCGATACTTCTGAGTTGAAATCAATGTGCAGGAAACAATAGCTCATTTTGGTATTGATACCAA
* * * *
64905982 TTCTCGAGTATCGATACTCAGGTTAAAAATTTAGATAATTTTGAATTGTATCAATAAATTGCTAG
259 TTCTCAAGTATCGATACTC-GGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAG
* *
64906047 GTTTTAGATTTTGAA-ATAAAACT-GAATGTTAAAAAGGTATTTATTTTCCAAA-TGGTATCAAT
323 GTTTTAGATTTTGAAGA-AAAA-TAGAATGTTAAAAAGGTATTGATTTTCCAAACT-GTATCGAT
* * *
64906109 ACCTATTTTCAGAAATATTAATACCCATTTAGTTGTTCTCATGTAATGTATGATATCATGTTTAT
385 ACCTATTTTGAGAAATATCAATACCCATTTAGATGTTCTCATGTAATGTATGATATCATGTTTAT
* * * *
64906174 TAGTAATTTTTT-TCGATCATTCACTGAGCTTATTTAAGCTCACACACTCTTTTCTAAACCTTTG
450 TGGTAGTTTTTTCCCGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACCTTTG
*
64906238 CAGATAGTTAGTGTTTCCGGTGTGGGCGGTGCA-GAATTCC-AGTGAACTGATCCAAGTTAGGCT
515 CAGATAGTTAGTGTTTCCGGTGTGGGCGGTG-AGGAATTCCAAG-GAAGTGATCCAAGTTAGGCT
* * * *
64906301 TAGTATTTGAGTAGGTGATATTATTACTATTATTTTTGAACTTTGGGAATAAGACAATGTGGTTG
578 TAGTGTTTGAGTAGGTGATATTATTGCTATTATTTTTGAAC-TGGGGAATAAGACAATGTGGTAG
* * * *
64906366 AATTGTTGGTTGATTATTATCTTAATGTTTTAAGTGATTATTTTGATTTTAATACTCATAGGTTA
642 ATTTGTTGGTTGATTATTATCTTGATGTTTTAAATGATTATTTTGA--TTAATACTCTTAGGTT-
*
64906431 AC-GGAC
704 CCTGGAC
* * *
64906437 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTCATATTGCTATAGACTTCAAATATGG
1 GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTGATATTGCTATGGACTTCAAATATAG
* * *
64906502 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATGTGATTCAGTATGCGG
66 ACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATATGATTGAGTATGTGG
* * * * * **
64906567 ATTGCCCTGTTTTGCTTGAATTTTTGTAGAATTATACAAAGGTTTTGGTAATCGGGGCATATGTA
131 AATGCCATGTTTTGCTGGAATTTTTGTAGAATTATACAAAGGTATTGATAATCACGGCATATGTA
* * * * * *
64906632 TCGATACTTCTAAGTTGAAACCAATTTAC-GTGAAACAATAGTTCATTTTGGTATTGATACCATT
196 TCGATACTTCTGAGTTGAAATCAATGTGCAG-GAAACAATAGCTCATTTTGGTATTGATACCAAT
* * *
64906696 TCTCAAGTATGGATACTCAGGGTAAAAATATGGATAGTTTTGAATTGTATCGATAAATTGCTAGG
260 TCTCAAGTATCGATACTC-GGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAGG
* * ** *
64906761 TTTTAGATTTTGAAGAAAAACAGAATGTT-AAAATGTACCGATTTTCCAAACAGTATCGATACCT
324 TTTTAGATTTTGAAGAAAAATAGAATGTTAAAAAGGTATTGATTTTCCAAACTGTATCGATACCT
* * * * *
64906825 ATTTTAAGAAATATCAATACCTATTTAGATGTTCTCATTTAATGTACT-ATATCTTATTTATTGG
389 ATTTTGAGAAATATCAATACCCATTTAGATGTTCTCATGTAATGTA-TGATATCATGTTTATTGG
* * * *
64906889 TATTTTTTTCCTGATCATTCACTGAGCTTTTTTAAACTCACACACTCTTTTCTAAACCTTTGCAG
453 TAGTTTTTTCCCGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACCTTTGCAG
* * *
64906954 ATAGTAAGTG-TTCCGGTGTAGGCGGTGCGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG
518 ATAGTTAGTGTTTCCGGTGTGGGCGGTGAGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTG
*
64907018 TTTGAGTAGGTGATATTATTGCTATTATTTTTGAAGTCT-AGGAATAAGACAATG
583 TTTGAGTAGGTGATATTATTGCTATTATTTTTGAA--CTGGGGAATAAGACAATG
64907072 CTATTATTTT
Statistics
Matches: 1794, Mismatches: 226, Indels: 79
0.85 0.11 0.04
Matches are distributed among these distances:
709 2 0.00
710 203 0.11
711 406 0.23
712 195 0.11
713 686 0.38
714 301 0.17
715 1 0.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (710 bp):
GTTGTTATTAGTTTATTGGTTTGCTTGGTTGAAATTATTGATATTGCTATGGACTTCAAATATAG
ACATTTTGATGTTGAATATTGAAGTTATGGATGCATGTTGAAGTGGTATATGATTGAGTATGTGG
AATGCCATGTTTTGCTGGAATTTTTGTAGAATTATACAAAGGTATTGATAATCACGGCATATGTA
TCGATACTTCTGAGTTGAAATCAATGTGCAGGAAACAATAGCTCATTTTGGTATTGATACCAATT
CTCAAGTATCGATACTCGGGTAAAAATATAGATAATTTTGAATTGTATCGATAAATTGCTAGGTT
TTAGATTTTGAAGAAAAATAGAATGTTAAAAAGGTATTGATTTTCCAAACTGTATCGATACCTAT
TTTGAGAAATATCAATACCCATTTAGATGTTCTCATGTAATGTATGATATCATGTTTATTGGTAG
TTTTTTCCCGATCATTCACTGAGCTTGTTTAAGCTCACACACTCTTTTCTAAACCTTTGCAGATA
GTTAGTGTTTCCGGTGTGGGCGGTGAGGAATTCCAAGGAAGTGATCCAAGTTAGGCTTAGTGTTT
GAGTAGGTGATATTATTGCTATTATTTTTGAACTGGGGAATAAGACAATGTGGTAGATTTGTTGG
TTGATTATTATCTTGATGTTTTAAATGATTATTTTGATTAATACTCTTAGGTTCCTGGAC
Found at i:64907074 original size:33 final size:33
Alignment explanation
Indices: 64907037--64907104 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
64907027 GTGATATTAT
64907037 TGCTATTATTTTTGAAGTCTAGGAATAAGACAA
1 TGCTATTATTTTTGAAGTCTAGGAATAAGACAA
*
64907070 TGCTATTATTTTTGAAGTCTGGGAATAAGACAA
1 TGCTATTATTTTTGAAGTCTAGGAATAAGACAA
64907103 TG
1 TG
64907105 TGATTGAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.37
Consensus pattern (33 bp):
TGCTATTATTTTTGAAGTCTAGGAATAAGACAA
Found at i:64907551 original size:23 final size:21
Alignment explanation
Indices: 64907525--64907588 Score: 51
Period size: 25 Copynumber: 2.9 Consensus size: 21
64907515 CATTATAAAG
64907525 AAATCATATTATATAATAAGGTT
1 AAAT-ATATTATATAATAA-GTT
*
64907548 AAATATATAATTAAATAATAAGTT
1 -AA-ATAT-ATTATATAATAAGTT
64907572 -AATATATGT-TATAATAA
1 AAATATAT-TATATAATAA
64907589 AACATAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
20 9 0.26
21 5 0.14
22 1 0.03
24 7 0.20
25 13 0.37
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (21 bp):
AAATATATTATATAATAAGTT
Found at i:64907560 original size:25 final size:23
Alignment explanation
Indices: 64907532--64907578 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
64907522 AAGAAATCAT
*
64907532 ATTATATAATAAGGTTAAATATATA
1 ATTAAATAATAA-GTT-AATATATA
64907557 ATTAAATAATAAGTTAATATAT
1 ATTAAATAATAAGTTAATATAT
64907579 GTTATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 3 0.14
25 11 0.52
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.40
Consensus pattern (23 bp):
ATTAAATAATAAGTTAATATATA
Found at i:64911855 original size:2 final size:2
Alignment explanation
Indices: 64911850--64911874 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64911840 ATTAGTTTTT
64911850 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
64911875 TGCGCATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64912753 original size:16 final size:16
Alignment explanation
Indices: 64912732--64912784 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
64912722 CTTTGGTAAA
64912732 GCAATATGTATATTCG
1 GCAATATGTATATTCG
*
64912748 GCAATATGGTA-A---A
1 GCAATAT-GTATATTCG
*
64912761 ACAATATGTATATTCG
1 GCAATATGTATATTCG
64912777 GCAATATG
1 GCAATATG
64912785 ATAAGTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
12 3 0.11
13 7 0.25
16 15 0.54
17 3 0.11
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (16 bp):
GCAATATGTATATTCG
Found at i:64912767 original size:29 final size:29
Alignment explanation
Indices: 64912725--64912784 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
64912715 TGTGATACTT
*
64912725 TGGTAAAGCAATATGTATATTCGGCAATA
1 TGGTAAAACAATATGTATATTCGGCAATA
64912754 TGGTAAAACAATATGTATATTCGGCAATA
1 TGGTAAAACAATATGTATATTCGGCAATA
64912783 TG
1 TG
64912785 ATAAGTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (29 bp):
TGGTAAAACAATATGTATATTCGGCAATA
Found at i:64915004 original size:20 final size:20
Alignment explanation
Indices: 64914958--64915104 Score: 84
Period size: 20 Copynumber: 7.3 Consensus size: 20
64914948 TGTTACAAAT
**
64914958 TTTTTTGGTACTTCCTTGT-A
1 TTTTTT-GTACTTCCTCATAA
* *
64914978 TTGTTTTGTATTTCCTTATAA
1 TT-TTTTGTACTTCCTCATAA
* * *
64914999 TTTTTTATAATTCCTCATAT
1 TTTTTTGTACTTCCTCATAA
*
64915019 TTTTTTGTACTTCCTCAT-G
1 TTTTTTGTACTTCCTCATAA
* * * **
64915038 TTTTTAGTACTT-GTTACGA
1 TTTTTTGTACTTCCTCATAA
* *
64915057 TTTTTTGGCACTTCATCATAA
1 TTTTTT-GTACTTCCTCATAA
* *
64915078 TTTTTTCTATTTCCTCATAA
1 TTTTTTGTACTTCCTCATAA
64915098 TATTTTT
1 T-TTTTT
64915105 ATATTTCCTA
Statistics
Matches: 97, Mismatches: 24, Indels: 11
0.73 0.18 0.08
Matches are distributed among these distances:
18 2 0.02
19 16 0.16
20 58 0.60
21 21 0.22
ACGTcount: A:0.18, C:0.15, G:0.08, T:0.59
Consensus pattern (20 bp):
TTTTTTGTACTTCCTCATAA
Found at i:64915047 original size:19 final size:20
Alignment explanation
Indices: 64915000--64915049 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
64914990 TCCTTATAAT
* *
64915000 TTTTTA-TAATTCCTCATAT
1 TTTTTAGTACTTCCTCATAG
*
64915019 TTTTTTGTACTTCCTCAT-G
1 TTTTTAGTACTTCCTCATAG
64915038 TTTTTAGTACTT
1 TTTTTAGTACTT
64915050 GTTACGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.18, C:0.16, G:0.06, T:0.60
Consensus pattern (20 bp):
TTTTTAGTACTTCCTCATAG
Found at i:64915095 original size:23 final size:21
Alignment explanation
Indices: 64915072--64915113 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
64915062 TGGCACTTCA
*
64915072 TCATAAT-TTTTTCTATTTCC
1 TCATAATATTTTTATATTTCC
64915092 TCATAATATTTTTATATTTCC
1 TCATAATATTTTTATATTTCC
64915113 T
1 T
64915114 ATTTTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.60
Consensus pattern (21 bp):
TCATAATATTTTTATATTTCC
Found at i:64915270 original size:22 final size:22
Alignment explanation
Indices: 64915231--64915277 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
64915221 TCCCTCATAA
* *
64915231 TTTTTGGTGGTTAGTTATTTTT
1 TTTTTGGTGGTTACTTATATTT
*
64915253 TTTTTGGTGGTTTCTTATATTT
1 TTTTTGGTGGTTACTTATATTT
64915275 TTT
1 TTT
64915278 GTATTTTCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.02, G:0.19, T:0.70
Consensus pattern (22 bp):
TTTTTGGTGGTTACTTATATTT
Found at i:64915717 original size:21 final size:22
Alignment explanation
Indices: 64915688--64915728 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
64915678 ACATATGAGA
*
64915688 AATACC-AAAAACTATGAGGTG
1 AATACCAAAAAACCATGAGGTG
*
64915709 AATATCAAAAAACCATGAGG
1 AATACCAAAAAACCATGAGG
64915729 GAGTTGAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (22 bp):
AATACCAAAAAACCATGAGGTG
Found at i:64915850 original size:20 final size:19
Alignment explanation
Indices: 64915804--64915851 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
64915794 TTATTTGTAG
*
64915804 ATAT-AAAAATTTTTATTA
1 ATATCAAAAATATTTATTA
*
64915822 ATATGCAAAAATATTTATTTT
1 ATAT-CAAAAATATTTA-TTA
64915843 ATATCAAAA
1 ATATCAAAA
64915852 TTTGATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 4 0.16
20 15 0.60
21 6 0.24
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (19 bp):
ATATCAAAAATATTTATTA
Found at i:64919206 original size:25 final size:26
Alignment explanation
Indices: 64919158--64919207 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
64919148 AGTCCTACCA
*
64919158 AACACAACTTCTATTTCAAGAGTCCG
1 AACACAACTTCTATTTAAAGAGTCCG
64919184 AACACAA-TT-TATTCTAAAGAGTCC
1 AACACAACTTCTATT-TAAAGAGTCC
64919208 TACAAACAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 4 0.18
25 11 0.50
26 7 0.32
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (26 bp):
AACACAACTTCTATTTAAAGAGTCCG
Found at i:64921073 original size:25 final size:25
Alignment explanation
Indices: 64921044--64921094 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
64921034 CAAAGGAAAA
**
64921044 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
64921069 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
64921094 T
1 T
64921095 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:64925104 original size:22 final size:22
Alignment explanation
Indices: 64925079--64925123 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
64925069 TTTAATAAAA
64925079 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* **
64925101 AAAATATTTACAGGATATTCCT
1 AAAATATCTACAAAATATTCCT
64925123 A
1 A
64925124 CACTCCCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:64926880 original size:25 final size:25
Alignment explanation
Indices: 64926851--64926901 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
64926841 CAAAGGAAAA
**
64926851 TCCTAATCTAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
64926876 TCCTAATAGAATTCCTAATTTAAAG
1 TCCTAATAGAATTCCTAATTTAAAG
64926901 T
1 T
64926902 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39
Consensus pattern (25 bp):
TCCTAATAGAATTCCTAATTTAAAG
Found at i:64930923 original size:28 final size:28
Alignment explanation
Indices: 64930891--64930944 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
64930881 TCTATATCAG
* *
64930891 TCAATATCTTTCAATATCAATCAATTTA
1 TCAATATCGTTCAATAACAATCAATTTA
*
64930919 TCAATATCGTTCAGTAACAATCAATT
1 TCAATATCGTTCAATAACAATCAATT
64930945 ATTCTTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.39, C:0.19, G:0.04, T:0.39
Consensus pattern (28 bp):
TCAATATCGTTCAATAACAATCAATTTA
Found at i:64931035 original size:17 final size:17
Alignment explanation
Indices: 64931013--64931047 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
64931003 TATTCACCTT
64931013 TCATACAATATTCTGTA
1 TCATACAATATTCTGTA
64931030 TCATACAATATTCTGTA
1 TCATACAATATTCTGTA
64931047 T
1 T
64931048 TATTCTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (17 bp):
TCATACAATATTCTGTA
Found at i:64931145 original size:18 final size:18
Alignment explanation
Indices: 64931122--64931217 Score: 75
Period size: 18 Copynumber: 5.3 Consensus size: 18
64931112 CGGTCAGTCA
*
64931122 TCAGTATTAATCAATTAT
1 TCAGTAATAATCAATTAT
* *
64931140 TCAGTAATAGTCATTTAT
1 TCAGTAATAATCAATTAT
* * *
64931158 TCAGTAACAGTCATTTAT
1 TCAGTAATAATCAATTAT
* * * *
64931176 TCAATAACAGTTAATTAT
1 TCAGTAATAATCAATTAT
* * *
64931194 TCAGTAATAGTCAGTTAC
1 TCAGTAATAATCAATTAT
64931212 TCAGTA
1 TCAGTA
64931218 CCTTTATTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (18 bp):
TCAGTAATAATCAATTAT
Found at i:64931162 original size:36 final size:36
Alignment explanation
Indices: 64931122--64931217 Score: 102
Period size: 36 Copynumber: 2.7 Consensus size: 36
64931112 CGGTCAGTCA
* * * *
64931122 TCAGTATTAATCAATTATTCAGTAATAGTCATTTAT
1 TCAGTAATAGTCAATTATTCAGTAACAGTCAATTAT
* * * *
64931158 TCAGTAACAGTCATTTATTCAATAACAGTTAATTAT
1 TCAGTAATAGTCAATTATTCAGTAACAGTCAATTAT
* *
64931194 TCAGTAATAGTCAGTTACTCAGTA
1 TCAGTAATAGTCAATTATTCAGTA
64931218 CCTTTATTTT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (36 bp):
TCAGTAATAGTCAATTATTCAGTAACAGTCAATTAT
Found at i:64931428 original size:51 final size:52
Alignment explanation
Indices: 64931334--64931451 Score: 159
Period size: 51 Copynumber: 2.2 Consensus size: 52
64931324 CCGTAACGGT
*
64931334 AACAGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTAACAATA-CGGTA-ACAGAGTACCTCATCGGAACAAATCCGA
* * *
64931388 AACAGTAACAGTAACAAT-CAGGT-ACAGAGTACCTCTTCGGAACGAATCCGG
1 AACAGTAACAGTAACAATAC-GGTAACAGAGTACCTCATCGGAACAAATCCGA
64931439 AACAGTAACAGTA
1 AACAGTAACAGTA
64931452 GTCGACACTT
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
51 38 0.64
52 1 0.02
53 3 0.05
54 17 0.29
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (52 bp):
AACAGTAACAGTAACAATACGGTAACAGAGTACCTCATCGGAACAAATCCGA
Found at i:64931596 original size:17 final size:18
Alignment explanation
Indices: 64931560--64931596 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
64931550 TTAATAGGGT
64931560 TTCAGTTCACTTTCTTAA
1 TTCAGTTCACTTTCTTAA
64931578 TTCAGTATCA-TTT-TTAA
1 TTCAGT-TCACTTTCTTAA
64931595 TT
1 TT
64931597 TATTTACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 9 0.50
19 3 0.17
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.54
Consensus pattern (18 bp):
TTCAGTTCACTTTCTTAA
Found at i:64931753 original size:19 final size:19
Alignment explanation
Indices: 64931731--64931768 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
64931721 TATCCAATTC
*
64931731 CCACATCAA-TCACATAAAT
1 CCACATAAATTCA-ATAAAT
64931750 CCACATAAATTCAATAAAT
1 CCACATAAATTCAATAAAT
64931769 TATTCATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (19 bp):
CCACATAAATTCAATAAAT
Found at i:64932020 original size:11 final size:11
Alignment explanation
Indices: 64932004--64932032 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
64931994 CTAGTTTTCC
64932004 CTTTCTCTTTT
1 CTTTCTCTTTT
64932015 CTTTCTCTTTT
1 CTTTCTCTTTT
64932026 CTTTCTC
1 CTTTCTC
64932033 CCCATTTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (11 bp):
CTTTCTCTTTT
Found at i:64932073 original size:15 final size:15
Alignment explanation
Indices: 64932055--64932084 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64932045 TCATGTTCTG
64932055 TTCTTTCTATTCTTT
1 TTCTTTCTATTCTTT
*
64932070 TTCTTTCTTTTCTTT
1 TTCTTTCTATTCTTT
64932085 CTTTTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (15 bp):
TTCTTTCTATTCTTT
Found at i:64932079 original size:19 final size:20
Alignment explanation
Indices: 64932050--64932090 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
64932040 TCGTTTCATG
64932050 TTCTGTTC-TTTCTATTCTTT
1 TTCTGTTCTTTTCT-TTCTTT
64932070 TTCT-TTCTTTTCTTTCTTT
1 TTCTGTTCTTTTCTTTCTTT
64932089 TT
1 TT
64932091 TTAACTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (20 bp):
TTCTGTTCTTTTCTTTCTTT
Found at i:64932158 original size:19 final size:19
Alignment explanation
Indices: 64932134--64932172 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64932124 AATACTTATT
*
64932134 TATTATTTA-TACATGTGTA
1 TATTA-TTAGTACATATGTA
64932153 TATTATTAGTACATATGTA
1 TATTATTAGTACATATGTA
64932172 T
1 T
64932173 CCATATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAGTACATATGTA
Found at i:64932220 original size:15 final size:14
Alignment explanation
Indices: 64932197--64932235 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
64932187 ACACTTGTCT
64932197 TTTATTTATTATAC
1 TTTATTTATTATAC
*
64932211 TTTATATTATTATATT
1 TTTAT-TTATTATA-C
64932227 TTTATTTAT
1 TTTATTTAT
64932236 AATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTTATTATAC
Found at i:64937037 original size:18 final size:18
Alignment explanation
Indices: 64937014--64937127 Score: 138
Period size: 18 Copynumber: 6.3 Consensus size: 18
64937004 CAGTCAGTCA
* * *
64937014 TCAGTATTAATCAGTTAT
1 TCAGTAATAGTCATTTAT
64937032 TCAGTAATAGTCATTTAT
1 TCAGTAATAGTCATTTAT
64937050 TCAGTAATAGTCATTTAT
1 TCAGTAATAGTCATTTAT
*
64937068 TCAGTAACAGTCATTTAT
1 TCAGTAATAGTCATTTAT
* * *
64937086 TCAGTAACAGTTAATTAT
1 TCAGTAATAGTCATTTAT
** *
64937104 TCAGTAGCAGTCAGTTAT
1 TCAGTAATAGTCATTTAT
64937122 TCAGTA
1 TCAGTA
64937128 CCTTTATTTT
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 87 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (18 bp):
TCAGTAATAGTCATTTAT
Found at i:64937350 original size:51 final size:52
Alignment explanation
Indices: 64937244--64937361 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 52
64937234 CTGTAACGGT
* * *
64937244 AACAGTAACAGTAACAGTAGCGGTACATAGAGTACCTCATCGGAACAAATTCGG
1 AACAGTAACAGTAACAATA-CGGTACA-AGAATACCTCATCGGAACAAATCCGG
* *
64937298 AACAGTAACAGTAACAAT-CAGGTAC-AGAATACCTCTTCGGAACGAATCCGG
1 AACAGTAACAGTAACAATAC-GGTACAAGAATACCTCATCGGAACAAATCCGG
*
64937349 AATAGTAACAGTA
1 AACAGTAACAGTA
64937362 GTCGACACTT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 34 0.60
52 1 0.02
53 5 0.09
54 17 0.30
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (52 bp):
AACAGTAACAGTAACAATACGGTACAAGAATACCTCATCGGAACAAATCCGG
Found at i:64937665 original size:19 final size:19
Alignment explanation
Indices: 64937643--64937680 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
64937633 TATTCAATTC
*
64937643 CCACATCAA-TCACATAAAT
1 CCACATAAATTCA-ATAAAT
64937662 CCACATAAATTCAATAAAT
1 CCACATAAATTCAATAAAT
64937681 TATTCATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (19 bp):
CCACATAAATTCAATAAAT
Found at i:64938077 original size:19 final size:19
Alignment explanation
Indices: 64938053--64938091 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64938043 AATACTTATT
*
64938053 TATTATTTA-TACATGTGTA
1 TATTA-TTAGTACATATGTA
64938072 TATTATTAGTACATATGTA
1 TATTATTAGTACATATGTA
64938091 T
1 T
64938092 CCATATAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAGTACATATGTA
Found at i:64938139 original size:15 final size:14
Alignment explanation
Indices: 64938116--64938154 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
64938106 ACACTTGTCT
64938116 TTTATTTATTATAC
1 TTTATTTATTATAC
*
64938130 TTTATATTATTATATT
1 TTTAT-TTATTATA-C
64938146 TTTATTTAT
1 TTTATTTAT
64938155 AATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTTATTATAC
Found at i:64939966 original size:40 final size:40
Alignment explanation
Indices: 64939929--64940113 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
64939919 GCTACTCGTT
*
64939929 CAAATGCCTTCGGGACGTAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
64939969 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
64940009 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
64940048 CAAATGCCTTC-GGATCTTAGTCCGG-TTATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATT-TAGTAAC-TCGCA
64940089 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64940114 CATCATTTGA
Statistics
Matches: 132, Mismatches: 6, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
38 3 0.02
39 37 0.28
40 79 0.60
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:64940044 original size:79 final size:82
Alignment explanation
Indices: 64939929--64940113 Score: 258
Period size: 79 Copynumber: 2.3 Consensus size: 82
64939919 GCTACTCGTT
*
64939929 CAAATGCCTTCGGGACGTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
64939992 GGATT-TAGTAAC-TCGCA
65 GG-TTATAGTAACTTAGCA
**
64940009 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
64940072 GTTATAGTCACTTAGCA
66 GTTATAGTAACTTAGCA
64940089 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64940114 CATCATTTGA
Statistics
Matches: 95, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
78 5 0.05
79 56 0.59
80 34 0.36
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GTTATAGTAACTTAGCA
Found at i:64943500 original size:40 final size:41
Alignment explanation
Indices: 64943456--64943534 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 41
64943446 CATCTTTGCA
*
64943456 CATTGCTGAAATTCTCTGTT-TTCCTCTTCATTTTTTTTTC
1 CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTTTTTTC
64943496 CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTTTTT
1 CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTTTTT
64943535 CTTTCACTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 20 0.54
41 17 0.46
ACGTcount: A:0.13, C:0.24, G:0.08, T:0.56
Consensus pattern (41 bp):
CATTGCTGAAATTCTCTGTTCTCCCTCTTCATTTTTTTTTC
Found at i:64950691 original size:18 final size:18
Alignment explanation
Indices: 64950648--64950801 Score: 130
Period size: 18 Copynumber: 8.6 Consensus size: 18
64950638 TATCAATATC
*
64950648 ATTCAGTAAC-GATCAATT
1 ATTCAGTAACAG-TCAGTT
* *
64950666 GTTCAGTAACAGTCGGTT
1 ATTCAGTAACAGTCAGTT
* *
64950684 ATTTAGTAACAGTCATTT
1 ATTCAGTAACAGTCAGTT
* *
64950702 ATTCAGTAACAGTCAATA
1 ATTCAGTAACAGTCAGTT
* * * *
64950720 ATTCAGTAATAATTAGTC
1 ATTCAGTAACAGTCAGTT
* *
64950738 ATTTAGTAACAGTCATTT
1 ATTCAGTAACAGTCAGTT
* *
64950756 ATTCAGTAACAGTTAATT
1 ATTCAGTAACAGTCAGTT
* *
64950774 ATTCAATAGCAGTCAGTT
1 ATTCAGTAACAGTCAGTT
*
64950792 ATTCAATAAC
1 ATTCAGTAAC
64950802 TTTATTTACC
Statistics
Matches: 106, Mismatches: 29, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
18 105 0.99
19 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (18 bp):
ATTCAGTAACAGTCAGTT
Found at i:64950725 original size:54 final size:54
Alignment explanation
Indices: 64950648--64950794 Score: 188
Period size: 54 Copynumber: 2.7 Consensus size: 54
64950638 TATCAATATC
* *
64950648 ATTCAGTAAC-GATCAATTGTTCAGTAACAGTCGGTTATTTAGTAACAGTCATTT
1 ATTCAGTAACAG-TCAATTATTCAGTAACAGTCAGTTATTTAGTAACAGTCATTT
* * * * *
64950702 ATTCAGTAACAGTCAATAATTCAGTAATAATTAGTCATTTAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTTAGTAACAGTCATTT
* * *
64950756 ATTCAGTAACAGTTAATTATTCAATAGCAGTCAGTTATT
1 ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATT
64950795 CAATAACTTT
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 76 0.99
55 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (54 bp):
ATTCAGTAACAGTCAATTATTCAGTAACAGTCAGTTATTTAGTAACAGTCATTT
Found at i:64952317 original size:13 final size:15
Alignment explanation
Indices: 64952291--64952323 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
64952281 CATTTACTTT
64952291 ATATATATTATAATA
1 ATATATATTATAATA
64952306 ATATA-ATT-TAATA
1 ATATATATTATAATA
64952319 ATATA
1 ATATA
64952324 CTTATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 3 0.17
15 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATATTATAATA
Found at i:64952480 original size:14 final size:15
Alignment explanation
Indices: 64952448--64952493 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
64952438 ACTTTATTTA
64952448 ATTAATATAAAATAAT
1 ATTAATAT-AAATAAT
64952464 ATTAATAT-AATAAT
1 ATTAATATAAATAAT
*
64952478 ATTTACT-TAAATAAT
1 A-TTAATATAAATAAT
64952493 A
1 A
64952494 AGTAAATACA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 8 0.30
15 11 0.41
16 8 0.30
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTAATATAAATAAT
Found at i:64952898 original size:17 final size:18
Alignment explanation
Indices: 64952876--64952910 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
64952866 GAATTGGGCC
64952876 GTGTGGG-CCACACGGGT
1 GTGTGGGACCACACGGGT
*
64952893 GTGTGGGACCACATGGGT
1 GTGTGGGACCACACGGGT
64952911 AGTCCACACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.14, C:0.20, G:0.46, T:0.20
Consensus pattern (18 bp):
GTGTGGGACCACACGGGT
Found at i:64958590 original size:38 final size:38
Alignment explanation
Indices: 64958519--64958696 Score: 189
Period size: 38 Copynumber: 4.6 Consensus size: 38
64958509 ATTTGATGTG
* *
64958519 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
*
64958559 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGCAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* *
64958597 TATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
64958635 TATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* *
64958673 TATCTGAGCTTAAAGTCCCGCAGG
1 TATCCG-GGTTAAA-TCCCGCAGG
64958697 TTTTGTGATG
Statistics
Matches: 122, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.02
38 90 0.74
39 13 0.11
40 17 0.14
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:64958628 original size:76 final size:78
Alignment explanation
Indices: 64958526--64958696 Score: 213
Period size: 76 Copynumber: 2.2 Consensus size: 78
64958516 GTGTATCCGG
* * * *
64958526 GCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTG
1 GCTTAAAGTCCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTG
64958591 GCAATATATC-CA
66 GCAATATATCTCA
* * * *
64958603 GGTTAAA-TCCCGCAGGCT-TCGTGCTGGTATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCT
1 GCTTAAAGTCCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCT
* * *
64958666 GGTATTATATCTGA
65 GGCAATATATCTCA
64958680 GCTTAAAGTCCCGCAGG
1 GCTTAAAGTCCCGCAGG
64958697 TTTTGTGATG
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
75 1 0.01
76 56 0.71
77 13 0.16
78 9 0.11
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (78 bp):
GCTTAAAGTCCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTG
GCAATATATCTCA
Found at i:64960132 original size:31 final size:31
Alignment explanation
Indices: 64960108--64960181 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 31
64960098 ATATTGAGTC
64960108 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATATTCAGCT
*
64960139 CGCACACTTAGTGC--TATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATATTC-AGCT
64960167 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64960182 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 6 0.15
31 14 0.35
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (31 bp):
CGCACACTTAGTGCTATATATATATTCAGCT
Found at i:64960177 original size:28 final size:29
Alignment explanation
Indices: 64960108--64960181 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 29
64960098 ATATTGAGTC
*
64960108 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATA-T-AACT
64960139 CGCACACTTAGTGCTATATA-ATCA-AACT
1 CGCACACTTAGTGCTATATATAT-ATAACT
64960167 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64960182 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 18 0.44
30 2 0.05
31 21 0.51
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATATAACT
Found at i:64960672 original size:2 final size:2
Alignment explanation
Indices: 64960660--64960695 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
64960650 CATACTCATG
* *
64960660 TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64960696 CACACATAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (2 bp):
TA
Found at i:64968432 original size:38 final size:38
Alignment explanation
Indices: 64968390--64968480 Score: 148
Period size: 38 Copynumber: 2.4 Consensus size: 38
64968380 ACAGGCTATA
*
64968390 TGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
64968428 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
64968466 TGCTGGTATTATATC
1 TGCTGGAATTATATC
64968481 TGAGCTTAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
37 1 0.02
38 46 0.94
39 2 0.04
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:64969735 original size:27 final size:27
Alignment explanation
Indices: 64969679--64969940 Score: 280
Period size: 27 Copynumber: 9.7 Consensus size: 27
64969669 TTAGTTTACC
* * *
64969679 AAATTACCAAAATA-CCCTCAATTAGCA
1 AAATTACCAAAATACCCCT-AGTTTGTA
* *
64969706 AAATTACCGAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
64969733 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
64969760 AAATTTACCAAAATACCCTTGGTTTGTA
1 AAA-TTACCAAAATACCCCTAGTTTGTA
*
64969788 AAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
64969815 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
64969842 AAATTACCAAAATA-CCCTTGATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
* * **
64969869 AAATTACCGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
* * *
64969896 AAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
64969923 AAATTACCAAAGTACCCC
1 AAATTACCAAAATACCCC
64969941 AGATTTACAG
Statistics
Matches: 204, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 5 0.02
27 167 0.82
28 32 0.16
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:64969744 original size:54 final size:55
Alignment explanation
Indices: 64969679--64969993 Score: 293
Period size: 54 Copynumber: 5.8 Consensus size: 55
64969669 TTAGTTTACC
* * *
64969679 AAATTACCAAAATACCCTC-AATTAGCAAAATTACCGAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCGAATTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* * *
64969733 AAATTACCAAAATACCC-CTAGTTTGTAAAATTTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGAATTTGTAAAA-TTACCAAAATACCCCTGGTTTGTA
* * * * *
64969788 AAATTACCAAAATACCC-CTAGTTTGTGAAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCTCGAATTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* * * ***
64969842 AAATTACCAAAATACCCTTG-ATTTGTGAAATTACCGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGAATTTGTAAAATTACCAAAATACCCCT-GGTTTGTA
* * * * * **
64969896 AAATTACTAAAATACCCTCG-ACTTGTAAAATTACCAAAGTACCCCAGATTTACA
1 AAATTACCAAAATACCCTCGAATTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* *** **
64969950 GAATTACCATTTTACCCTCG-ATTTACAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCTCGAATTTGTAAAATTACCAAAATACCC
64969994 TTGTAAGGTA
Statistics
Matches: 218, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
53 5 0.02
54 159 0.73
55 54 0.25
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (55 bp):
AAATTACCAAAATACCCTCGAATTTGTAAAATTACCAAAATACCCCTGGTTTGTA
Found at i:64969900 original size:81 final size:80
Alignment explanation
Indices: 64969670--64969993 Score: 310
Period size: 81 Copynumber: 4.0 Consensus size: 80
64969660 TAGAATACTT
** ** * * *
64969670 TAGTTTACCAAATTACCAAAATACCCTCAATTAGCAAAATTACCGAAATACCCCTGGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCC-GATTTGTAAA
64969735 ATTACCAAAATACCCC
65 ATTACCAAAATACCCC
* * * * *
64969751 TAGTTTGTAAAATTTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTGA
1 TAGTTTATAAAA-TTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCCGA-TTTGTAA
64969816 AATTACCAAAATACCCC
64 AATTACCAAAATACCCC
* **
64969833 TAGTTTATAAAATTACCAAAATACCCTTGATTTGTGAAATTACCGAAATACCCTCGACCTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCC-CGATTTGTAAA
*
64969898 ATTACTAAAATA-CCC
65 ATTACCAAAATACCCC
* * * * ** ** * ** **
64969913 TCGACTTGTAAAATTACCAAAGTACCCCAGATTTACAGAATTACC-ATTTTACCCTCGATTTACA
1 TAG-TTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCGA-AATACCC-CGATTTGTA
64969977 AAATTACCAAAATACCC
63 AAATTACCAAAATACCC
64969994 TTGTAAGGTA
Statistics
Matches: 199, Mismatches: 38, Indels: 11
0.80 0.15 0.04
Matches are distributed among these distances:
80 6 0.03
81 119 0.60
82 74 0.37
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.29
Consensus pattern (80 bp):
TAGTTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCCGATTTGTAAAA
TTACCAAAATACCCC
Found at i:64969954 original size:27 final size:27
Alignment explanation
Indices: 64969673--64969994 Score: 206
Period size: 27 Copynumber: 11.9 Consensus size: 27
64969663 AATACTTTAG
*
64969673 TTTACCAAATTACCAAAATACCCTC-A
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
64969699 ATTAGCAAAATTACCGAAATACCC-CTGG
1 TTTA-CAAAATTACCAAAATACCCTC-GA
** * *
64969727 TTTGTAAAATTACCAAAATACCCCTAGT
1 TTTACAAAATTACCAAAATA-CCCTCGA
* * *
64969755 TTGTA-AAATTTACCAAAATACCCTTGG
1 TT-TACAAAATTACCAAAATACCCTCGA
** *
64969782 TTTGTAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCAAAATACCCTCGA
*** *
64969808 GTTTGTGAAATTACCAAAATACCC-CTA
1 -TTTACAAAATTACCAAAATACCCTCGA
* *
64969835 GTTTATAAAATTACCAAAATACCCTTGA
1 -TTTACAAAATTACCAAAATACCCTCGA
*** *
64969863 TTTGTGAAATTACCGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** ** *
64969890 CCTGTAAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
64969917 CTTGTAAAATTACCAAAGTACCC-CAGA
1 TTTACAAAATTACCAAAATACCCTC-GA
* ***
64969944 TTTACAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
64969971 TTTACAAAATTACCAAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
64969995 TGTAAGGTAG
Statistics
Matches: 238, Mismatches: 47, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
26 6 0.03
27 207 0.87
28 24 0.10
29 1 0.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:64970008 original size:27 final size:27
Alignment explanation
Indices: 64969978--64970120 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
64969968 CGATTTACAA
* *
64969978 AATTACCAAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
64970005 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
64970032 AATTACCGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
64970059 AAATT-TTGAAATACACC-TGTAGGGTAG
1 -AATTACCGAAATAC-CCTTGTAGGGTAG
* * * *
64970086 AATTACTGAGATACCCTTTGTGGGGTAA
1 AATTACCGAAATACCC-TTGTAGGGTAG
64970114 AATTACC
1 AATTACC
64970121 ATTTTACCCC
Statistics
Matches: 96, Mismatches: 15, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.06
27 71 0.74
28 19 0.20
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:64970100 original size:54 final size:55
Alignment explanation
Indices: 64969978--64970118 Score: 180
Period size: 54 Copynumber: 2.6 Consensus size: 55
64969968 CGATTTACAA
* * * *
64969978 AATTACCAAAATACCCTTGTAAGGTAG-AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCTTTGTAGGGTAGAAATTATCGAAATACACCTGTAGGGTAG
*
64970032 AATTACCGAAATACCTTTGTAGGGTAGAAATT-TTGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCTTTGTAGGGTAGAAATTATCGAAATACACCTGTAGGGTAG
* * *
64970086 AATTACTGAGATACCCTTTGTGGGGTA-AAATTA
1 AATTACCGAAATA-CCTTTGTAGGGTAGAAATTA
64970119 CCATTTTACC
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
54 60 0.79
55 16 0.21
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (55 bp):
AATTACCGAAATACCTTTGTAGGGTAGAAATTATCGAAATACACCTGTAGGGTAG
Found at i:64970549 original size:22 final size:22
Alignment explanation
Indices: 64970497--64970561 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
64970487 GCCAATTATT
* *
64970497 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
64970519 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
64970541 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
64970562 ACTTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:64970750 original size:27 final size:27
Alignment explanation
Indices: 64970720--64970854 Score: 150
Period size: 27 Copynumber: 5.0 Consensus size: 27
64970710 ATTCTGTTAA
* *
64970720 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
64970747 GTGGCTATGCCA-AATTATCAGTTTCTG
1 GTGGCTATGCCACAA-TATCTGTTTCTG
64970774 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
64970801 GTGGCTCTGCCACAATATATGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
64970828 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
64970854 G
1 G
64970855 AAGCCATGCT
Statistics
Matches: 93, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
26 13 0.14
27 73 0.78
28 5 0.05
29 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:64970981 original size:6 final size:6
Alignment explanation
Indices: 64970972--64971087 Score: 67
Period size: 6 Copynumber: 18.8 Consensus size: 6
64970962 TTGCATTCAC
* * * * *
64970972 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTTTG ATTATG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
64971022 ATTTTG ATTCTG ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
64971071 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
64971088 AGTTCTAATA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
5 4 0.05
6 68 0.83
7 7 0.09
8 3 0.04
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:64971003 original size:25 final size:25
Alignment explanation
Indices: 64970975--64971036 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
64970965 CATTCACATT
* * *
64970975 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTATGTCACCTAATA
* *
64971000 CTGATTTTGATTATGTCACCTAATT
1 CTGATTCTGATTATGTCACCTAATA
*
64971025 TTGATTCTGATT
1 CTGATTCTGATT
64971037 TTGATTCTGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.21, C:0.16, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTATGTCACCTAATA
Found at i:64971085 original size:37 final size:37
Alignment explanation
Indices: 64970981--64971087 Score: 126
Period size: 37 Copynumber: 2.9 Consensus size: 37
64970971 CATTCTGATT
* *
64970981 CTGATTCTG-TTACCTGATACTGATTTTGATTATGTCAC
1 CTGATTCTGATT--CTGATTCTGATTTTGATTCTGTCAC
* * * *
64971019 CTAATTTTGATTCTGATTTTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGATTTTGATTCTGTCAC
*
64971056 CTGATTCTGATTCTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCTGATTTTGATTCT
64971088 AGTTCTAATA
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
37 48 0.84
38 7 0.12
39 2 0.04
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGATTTTGATTCTGTCAC
Found at i:64979404 original size:14 final size:15
Alignment explanation
Indices: 64979372--64979413 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
64979362 ATATACAAAT
*
64979372 AAAAGAATTACTAGA
1 AAAAGAATTAATAGA
*
64979387 AAAAGGATTAATAGA
1 AAAAGAATTAATAGA
64979402 AAAA-AA-TAATAG
1 AAAAGAATTAATAG
64979414 TCTACATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 6 0.25
14 1 0.04
15 17 0.71
ACGTcount: A:0.64, C:0.02, G:0.14, T:0.19
Consensus pattern (15 bp):
AAAAGAATTAATAGA
Found at i:64983215 original size:16 final size:16
Alignment explanation
Indices: 64983202--64983233 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64983192 GTGATTTTTT
64983202 AAATAATTATTTTTAA
1 AAATAATTATTTTTAA
64983218 AAATAATTATTTTTAA
1 AAATAATTATTTTTAA
64983234 GGATTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AAATAATTATTTTTAA
Found at i:64983216 original size:14 final size:14
Alignment explanation
Indices: 64983197--64983233 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 14
64983187 TAGGTGTGAT
64983197 TTTTTAAATAATTA
1 TTTTTAAATAATTA
64983211 TTTTTAAAAATAATTA
1 TTTTT--AAATAATTA
64983227 TTTTTAA
1 TTTTTAA
64983234 GGATTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
16 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTTTAAATAATTA
Found at i:64985611 original size:17 final size:18
Alignment explanation
Indices: 64985589--64985624 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
64985579 CTTATTTTGA
64985589 TTTTTT-GATTTTCGCTC
1 TTTTTTCGATTTTCGCTC
64985606 TTTTTTGCGATTTTCGCTC
1 TTTTTT-CGATTTTCGCTC
64985625 CCAAATGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
19 11 0.65
ACGTcount: A:0.06, C:0.19, G:0.14, T:0.61
Consensus pattern (18 bp):
TTTTTTCGATTTTCGCTC
Found at i:64985805 original size:20 final size:21
Alignment explanation
Indices: 64985766--64985808 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
64985756 AATTTGTAAC
64985766 TTAAAAAAAAACTTACATATA
1 TTAAAAAAAAACTTACATATA
* *
64985787 TTAATAAAAAA-TTATATATA
1 TTAAAAAAAAACTTACATATA
64985807 TT
1 TT
64985809 TCAGATATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (21 bp):
TTAAAAAAAAACTTACATATA
Found at i:64987014 original size:12 final size:12
Alignment explanation
Indices: 64986997--64987025 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
64986987 AACAACCTTC
64986997 ACATAAGGCTTT
1 ACATAAGGCTTT
64987009 ACATAAGGCTTT
1 ACATAAGGCTTT
64987021 ACATA
1 ACATA
64987026 GGTAATAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (12 bp):
ACATAAGGCTTT
Found at i:64987975 original size:43 final size:43
Alignment explanation
Indices: 64987927--64988123 Score: 227
Period size: 43 Copynumber: 4.6 Consensus size: 43
64987917 AAACCGCCAT
* * *
64987927 TATAGAACGTGACCTTTAGCGGCAC-TTTCTCTACTAACGCTGC
1 TATAGAACATGACCTTTAGCGGCACTTTTCTC-ACAAACACTGC
* * * **
64987970 TATAGAACGTTACCTTTAGCGGCACTTTTCTGACAAA-TGTCGC
1 TATAGAACATGACCTTTAGCGGCACTTTTCTCACAAACACT-GC
* * *
64988013 AATAGAACATGACCTTTAGCGACACTTTTCTCACAAACACTGT
1 TATAGAACATGACCTTTAGCGGCACTTTTCTCACAAACACTGC
* * *
64988056 TATAGAACATGACCTTTAGCGACGCTTTTCTCACAAACACTGT
1 TATAGAACATGACCTTTAGCGGCACTTTTCTCACAAACACTGC
*
64988099 TATAGAACATGACCTTTAGTGGCAC
1 TATAGAACATGACCTTTAGCGGCAC
64988124 ATTCACCAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.01
43 126 0.95
44 6 0.05
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
TATAGAACATGACCTTTAGCGGCACTTTTCTCACAAACACTGC
Found at i:64994142 original size:9 final size:9
Alignment explanation
Indices: 64994128--64994216 Score: 76
Period size: 9 Copynumber: 10.1 Consensus size: 9
64994118 TATGTATTAC
*
64994128 GTAAGTTAA
1 GTAAGTTAT
*
64994137 GTAAGTTTT
1 GTAAGTTAT
*
64994146 GTAAGTTTT
1 GTAAGTTAT
64994155 GTAAGTTAT
1 GTAAGTTAT
* *
64994164 GATATGATAT
1 G-TAAGTTAT
* *
64994174 AT-ATTTAT
1 GTAAGTTAT
64994182 GT-A-TTAT
1 GTAAGTTAT
*
64994189 GTAAGTTTT
1 GTAAGTTAT
64994198 GTAAGTTAT
1 GTAAGTTAT
64994207 GTAAGTTAT
1 GTAAGTTAT
64994216 G
1 G
64994217 ATATGATATA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
7 6 0.09
8 6 0.09
9 47 0.72
10 6 0.09
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.48
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:64994630 original size:160 final size:160
Alignment explanation
Indices: 64994252--64994688 Score: 691
Period size: 160 Copynumber: 2.7 Consensus size: 160
64994242 TAAATATTAT
64994252 TTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTATAAAAAGTTGA
1 TTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTATAAAAAGTTGA
* * * * *
64994317 AAACTGTACAAGACGAAATGTCAACTTTGTTCCATAAAAAATAAAAATAAAAATAAAATTTGACA
66 AAACCGTATAAGATGAAATGTCAACTTTGTTCCAT---GAA-AAAAATAAAAATAAAAATTGACA
64994382 ATGCAGAAAATCACATGGAAAAAAAATTATTTTAA
127 ATGCAGAAAATCACATGG-AAAAAAATTATTTTAA
* *
64994417 TTCAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAGTTGTGTATAAAAAGTTGA
1 TTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTATAAAAAGTTGA
* **
64994482 AAACCGTATAAGATGGAAATGTCAACTTTGATCCATGGAAAAAAATAAAAATAAAAATTGATGAT
66 AAACCGTATAAGAT-GAAATGTCAACTTTGTTCCAT-GAAAAAAATAAAAATAAAAATTGACAAT
64994547 GCAGAAAATCACAT-G-AAAAAATTATTTTAA
129 GCAGAAAATCACATGGAAAAAAATTATTTTAA
64994577 TTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTATAAAAAGTTGA
1 TTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTATAAAAAGTTGA
*
64994642 AAACCGTATAAGATGAAATGTCAACTTTGTTCTATGAAAAAAA-AAAA
66 AAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAATAAAA
64994689 GATTGAACCT
Statistics
Matches: 256, Mismatches: 15, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
157 4 0.02
158 8 0.03
159 19 0.07
160 92 0.36
162 1 0.00
163 36 0.14
164 2 0.01
165 74 0.29
166 20 0.08
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (160 bp):
TTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATTGTGTATAAAAAGTTGA
AAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAATAAAAATAAAAATTGACAATGC
AGAAAATCACATGGAAAAAAATTATTTTAA
Found at i:64999326 original size:42 final size:43
Alignment explanation
Indices: 64999251--64999333 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
64999241 TTAGGGTTTC
* *
64999251 AAATTGGGAAAAAAGGGTAATTGCTTTAGGGATTTTGGATTTT
1 AAATTGGGAAAAAAGGGTAATTACTTTAGGGATTTCGGATTTT
* * *
64999294 AAATTGGG-GAAATGGGTGATTACTTTAGGGATTTCGGATT
1 AAATTGGGAAAAAAGGGTAATTACTTTAGGGATTTCGGATT
64999334 AGGGAAAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 27 0.77
43 8 0.23
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.36
Consensus pattern (43 bp):
AAATTGGGAAAAAAGGGTAATTACTTTAGGGATTTCGGATTTT
Found at i:64999687 original size:114 final size:114
Alignment explanation
Indices: 64999454--64999662 Score: 294
Period size: 114 Copynumber: 1.8 Consensus size: 114
64999444 CCTTTGTAGT
* * * * *
64999454 GTTTTTATCCTAGCACCACTAAAGGCAAACCTATTTCGGCATTTTACCGAAAATTCCACTAAAAA
1 GTTTTTACCCTAGCACCACTAAAGCCAAACCTATTACGGCATTTTACCAAAAATGCCACTAAAAA
64999519 TCCAATAAAACGACACCGTTTTGATTTAAACAAAATAACATTTAGCGGC
66 TCCAATAAAACGACACCGTTTTGATTTAAACAAAATAACATTTAGCGGC
* * * * *
64999568 GTTTTTACCCTAGCGCCGCTAAATCCTAACCTATTACGGCATTTTACCAAAAATGCCACTGAGAA
1 GTTTTTACCCTAGCACCACTAAAGCCAAACCTATTACGGCATTTTACCAAAAATGCCACT-AAAA
* *
64999633 ATCCAATAAAATGGCACCGTTTTG-TTTAAA
65 ATCCAATAAAACGACACCGTTTTGATTTAAA
64999663 ACATAATGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
114 57 0.70
115 25 0.30
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (114 bp):
GTTTTTACCCTAGCACCACTAAAGCCAAACCTATTACGGCATTTTACCAAAAATGCCACTAAAAA
TCCAATAAAACGACACCGTTTTGATTTAAACAAAATAACATTTAGCGGC
Found at i:64999778 original size:20 final size:20
Alignment explanation
Indices: 64999740--64999778 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
64999730 AGATTCAATC
***
64999740 AAATTTTCTTCTTTTTTTAA
1 AAATTTTCTTCTGCGTTTAA
64999760 AAATTTTCTTCTGCGTTTA
1 AAATTTTCTTCTGCGTTTA
64999779 TGAAAAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.05, T:0.59
Consensus pattern (20 bp):
AAATTTTCTTCTGCGTTTAA
Found at i:64999911 original size:7 final size:7
Alignment explanation
Indices: 64999899--65000048 Score: 99
Period size: 7 Copynumber: 20.9 Consensus size: 7
64999889 TTTGATCTTT
64999899 CCTAAAC
1 CCTAAAC
64999906 CCTAAAC
1 CCTAAAC
*
64999913 CTTAAAC
1 CCTAAAC
64999920 CCTAAAC
1 CCTAAAC
64999927 CC-AAA-
1 CCTAAAC
64999932 CCTCAAGAC
1 CCT-AA-AC
64999941 CCTAAATC
1 CCTAAA-C
*
64999949 CC-AATC
1 CCTAAAC
*
64999955 TCTAAAC
1 CCTAAAC
64999962 CCATAAAC
1 CC-TAAAC
*
64999970 CTCAAAAC
1 C-CTAAAC
*
64999978 CATAAAC
1 CCTAAAC
* *
64999985 TCGAAAC
1 CCTAAAC
*
64999992 CATAAAC
1 CCTAAAC
*
64999999 CATAAAC
1 CCTAAAC
*
65000006 CATAAAC
1 CCTAAAC
65000013 CCTTAAACC
1 CC-TAAA-C
65000022 CCTAAAC
1 CCTAAAC
*
65000029 TCTAAAC
1 CCTAAAC
**
65000036 TATAAAC
1 CCTAAAC
65000043 CCTAAA
1 CCTAAA
65000049 TTACTTAGAT
Statistics
Matches: 113, Mismatches: 20, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
5 2 0.02
6 5 0.04
7 74 0.65
8 25 0.22
9 7 0.06
ACGTcount: A:0.46, C:0.35, G:0.01, T:0.17
Consensus pattern (7 bp):
CCTAAAC
Found at i:65000006 original size:44 final size:44
Alignment explanation
Indices: 64999957--65000048 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
64999947 TCCCAATCTC
64999957 TAAACCCATAAA-CCTCAAAACCATAAACTCGAAACCATAAACCA
1 TAAA-CCATAAACCCTCAAAACCATAAACTCGAAACCATAAACCA
* * * * * *
65000001 TAAACCATAAACCCTTAAACCCCTAAACTCTAAACTATAAACCC
1 TAAACCATAAACCCTCAAAACCATAAACTCGAAACCATAAACCA
65000045 TAAA
1 TAAA
65000049 TTACTTAGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 7 0.17
44 34 0.83
ACGTcount: A:0.50, C:0.32, G:0.01, T:0.17
Consensus pattern (44 bp):
TAAACCATAAACCCTCAAAACCATAAACTCGAAACCATAAACCA
Found at i:65004996 original size:46 final size:46
Alignment explanation
Indices: 65004946--65005043 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
65004936 CAAGATTGTG
*
65004946 TTAATTTTATTTGAATTAATTTATTAAACTATAACAAATGCTTGAC
1 TTAATTTTATTTGAATTAATTTATTAAACTATAACAAAGGCTTGAC
* * *
65004992 TTAATTTTGTTTGTATTAATTTATTAAACTATCACAAAGGCTTGAC
1 TTAATTTTATTTGAATTAATTTATTAAACTATAACAAAGGCTTGAC
65005038 TTAATT
1 TTAATT
65005044 AACACAACTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.47
Consensus pattern (46 bp):
TTAATTTTATTTGAATTAATTTATTAAACTATAACAAAGGCTTGAC
Found at i:65012588 original size:40 final size:39
Alignment explanation
Indices: 65012528--65012625 Score: 133
Period size: 40 Copynumber: 2.5 Consensus size: 39
65012518 CGGATGATGA
*
65012528 CCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGG-CTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
65012568 CTGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCTATAT
1 C-CGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
65012608 CCGGCTAAATCCCGAAGG
1 CCGGCTAAGTCCCGAAGG
65012626 TACTTGGGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 15 0.29
40 34 0.67
41 2 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:65016717 original size:40 final size:40
Alignment explanation
Indices: 65016662--65016884 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
65016652 TATTCGGATG
65016662 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
65016702 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
65016745 ATACCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
65016784 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
65016824 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
65016864 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65016885 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
39 32 0.20
40 94 0.58
41 1 0.01
42 16 0.10
43 20 0.12
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:65016804 original size:82 final size:79
Alignment explanation
Indices: 65016666--65016884 Score: 282
Period size: 82 Copynumber: 2.7 Consensus size: 79
65016656 CGGATGATAT
* **
65016666 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
65016731 TGCGAGTAGTTG-CTATAC
65 TGC---TAG-TGACTATAC
*
65016749 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
*
65016814 GCTAGTGACTATAT
66 GCTAGTGACTATAC
* * *
65016828 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
65016885 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 2 0.02
79 32 0.26
80 26 0.21
81 2 0.02
82 52 0.42
83 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATAC
Found at i:65024855 original size:40 final size:40
Alignment explanation
Indices: 65024795--65025017 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
65024785 TATTCGGATG
65024795 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
65024835 ATATCCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
65024878 ATACCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * * *
65024917 ATATCCGGGCTAAGTCCCGAAGGCATTCATACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
65024957 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
65024997 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65025018 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 32 0.20
40 91 0.57
41 1 0.01
42 16 0.10
43 20 0.12
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:65024937 original size:82 final size:79
Alignment explanation
Indices: 65024799--65025017 Score: 264
Period size: 82 Copynumber: 2.7 Consensus size: 79
65024789 CGGATGATAT
* * **
65024799 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTTCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
65024864 TGCGAGTAGTTG-CTATAC
65 T---ACTAG-TGACTATAC
*
65024882 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
*
65024947 ACTAGTGACTATAT
66 ACTAGTGACTATAC
* * *
65024961 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
65025018 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
78 2 0.02
79 33 0.27
80 26 0.21
81 2 0.02
82 49 0.40
83 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
ACTAGTGACTATAC
Found at i:65031311 original size:46 final size:46
Alignment explanation
Indices: 65031260--65031358 Score: 162
Period size: 46 Copynumber: 2.2 Consensus size: 46
65031250 CAAGATTGTG
*
65031260 TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAATGCTTGAA
1 TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAAGGCTTGAA
* * *
65031306 TTAATTTTGTTTGCATTAATTTATTAAACTATCACAAAGGCTTGAC
1 TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAAGGCTTGAA
65031352 TTAATTT
1 TTAATTT
65031359 ATAATTTTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.46
Consensus pattern (46 bp):
TTAATTTTGTTTGAATTAATTTATTAAACTATAACAAAGGCTTGAA
Found at i:65036939 original size:40 final size:40
Alignment explanation
Indices: 65036895--65037120 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
65036885 GCTACTCGTT
* * *
65036895 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
* *
65036935 CAAATGCCTTCGGGA-CTTATCTCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
65036975 CAAATGCCTTCGGATCTTAGTCCGGATTTAGGAACTCGTA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
65037015 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
65037055 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
65037096 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
65037121 CATCATTCAA
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 150 0.90
41 13 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:65037018 original size:80 final size:80
Alignment explanation
Indices: 65036929--65037120 Score: 282
Period size: 80 Copynumber: 2.4 Consensus size: 80
65036919 GTTATAGTAG
65036929 CTCGCACAAATGCCTTCGGGACTTA-TCTCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTT
1 CTCGCACAAATGCCTTCGGGACTTAGTC-CGGATTTAGTAACTCGCACAAATGCCTTCGGATCTT
*
65036993 AGTCCGGATTTAGGAA
65 AGTCCGGATATAGGAA
*
65037009 CTCGTACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTT
1 CTCGCACAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTT
**
65037073 AGTCCGGATATAGTCA
65 AGTCCGGATATAGGAA
* *
65037089 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCGGGACTTAGTCCGGA
65037121 CATCATTCAA
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
79 3 0.03
80 86 0.85
81 12 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (80 bp):
CTCGCACAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTA
GTCCGGATATAGGAA
Found at i:65037104 original size:120 final size:120
Alignment explanation
Indices: 65036888--65037120 Score: 289
Period size: 120 Copynumber: 1.9 Consensus size: 120
65036878 GGATATAGCT
* *
65036888 ACTCGTTCAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTT
1 ACTCGTACAAATACCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
* * *
65036953 ATCTCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGGA
66 ATCTCGGATATAGTAACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGGA
* * *
65037008 ACTCGTACAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGAT
1 ACTCGTACAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-
*
65037070 CTTAGTC-CGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 CTTA-TCTCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
65037121 CATCATTCAA
Statistics
Matches: 98, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
119 6 0.06
120 77 0.79
121 15 0.15
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (120 bp):
ACTCGTACAAATACCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
ATCTCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGGA
Found at i:65039864 original size:42 final size:42
Alignment explanation
Indices: 65039817--65039923 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
65039807 TATTGGCCTC
65039817 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
65039859 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
65039901 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
65039924 ATTGTACAGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:65039938 original size:30 final size:28
Alignment explanation
Indices: 65039902--65040000 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
65039892 GACAAGATTG
* *
65039902 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
65039932 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
65039960 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
65039987 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65040001 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:65039971 original size:28 final size:28
Alignment explanation
Indices: 65039902--65040000 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
65039892 GACAAGATTG
* * * *
65039902 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
65039932 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
65039960 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
65039987 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
65040001 GACTCACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:65046716 original size:43 final size:43
Alignment explanation
Indices: 65046668--65046792 Score: 137
Period size: 43 Copynumber: 2.9 Consensus size: 43
65046658 ATAGAGATGT
*
65046668 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGA
1 GATTACATGTAAGACCATGTCTGGGATA-TGGCATTGTATATGA
* * * * * *
65046711 GATTACGTGTAAGACCCTGTATTGGATAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGATA-TGGCATTGTATATGA
* *
65046754 GATAACATGTAAGACCATATCTGGGATATGGCATTGTAT
1 GATTACATGTAAGACCATGTCTGGGATATGGCATTGTAT
65046793 GAGTTATATG
Statistics
Matches: 65, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
42 9 0.14
43 56 0.86
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGATATGGCATTGTATATGA
Found at i:65050341 original size:46 final size:45
Alignment explanation
Indices: 65050282--65050457 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
65050272 TATTTGGGCA
* *
65050282 TCCGAACTGGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
65050328 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
65050375 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
65050421 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65050458 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:65050437 original size:93 final size:93
Alignment explanation
Indices: 65050278--65050449 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
65050268 AGGATATTTG
* * **
65050278 GGCATCCGAACTGGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65050343 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
65050371 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65050436 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
65050450 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:65053226 original size:15 final size:15
Alignment explanation
Indices: 65053206--65053274 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
65053196 GTATCTTGGG
65053206 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
65053221 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
65053236 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
65053251 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
65053266 TTTCTTTAT
1 TTTCTTTAT
65053275 TCGATTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:65053275 original size:30 final size:30
Alignment explanation
Indices: 65053197--65053276 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
65053187 CATAATATCG
* * *
65053197 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
65053227 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
65053257 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
65053277 GATTTTCTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:65055726 original size:46 final size:45
Alignment explanation
Indices: 65055667--65055842 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
65055657 TATTTGGGCA
* *
65055667 TCCGAACTGGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
65055713 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
65055760 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
65055806 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65055843 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 64 0.60
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:65055822 original size:93 final size:93
Alignment explanation
Indices: 65055663--65055834 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
65055653 AGGATATTTG
* * * *
65055663 GGCATCCGAACTGGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
65055728 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
65055756 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC-CTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTC-GAACTCGTTGA
65055820 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
65055835 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:65058395 original size:26 final size:26
Alignment explanation
Indices: 65058366--65058447 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
65058356 TGGTACAAAT
65058366 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65058392 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
65058418 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
65058444 TGAT
1 TGAT
65058448 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:65060088 original size:27 final size:27
Alignment explanation
Indices: 65060048--65060188 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 27
65060038 AGGAAGCGTC
*
65060048 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
65060075 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
65060101 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
65060129 CTAGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
65060156 CTGGTGGCTCTTG-CACAA-TATCTGTAT
1 CTGGTGGCTC-TGCCACAATTATCTG-AT
65060183 CTGGTG
1 CTGGTG
65060189 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
26 11 0.11
27 82 0.83
28 6 0.06
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Done.