Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 217 of 328
Found at i:65060127 original size:54 final size:54
Alignment explanation
Indices: 65060045--65060188 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
65060035 TGGAGGAAGC
65060045 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
65060099 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
65060153 GTTCTGGTGGCTCTTG-CACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCT-ATGCCACAATTATCTG-ATCTGGTG
65060189 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 6 0.07
54 76 0.90
55 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:65060199 original size:27 final size:26
Alignment explanation
Indices: 65060061--65060206 Score: 93
Period size: 27 Copynumber: 5.4 Consensus size: 26
65060051 GTGGCTATGC
* *
65060061 CACAATTATCTGATCTGGTGGCTC-TG
1 CACAA-TATCTGTTCTGGTGACTCGTG
* * *
65060087 CCACATATATCTGTCCTGGTGGCT-ATG
1 -CACA-ATATCTGTTCTGGTGACTCGTG
* * *
65060114 CCACAATTATCTGATCTAGTGGCTC-TG
1 -CACAA-TATCTGTTCTGGTGACTCGTG
* *
65060141 CCACATATATCTGTTCTGGTGGCTCTTG
1 -CACA-ATATCTGTTCTGGTGACTCGTG
65060169 CACAATATCTGTATCTGGTGACTTCGT-
1 CACAATATCTGT-TCTGGTGAC-TCGTG
65060196 CACAATATCTG
1 CACAATATCTG
65060207 GCAGCCTCGC
Statistics
Matches: 102, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
26 9 0.09
27 86 0.84
28 7 0.07
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (26 bp):
CACAATATCTGTTCTGGTGACTCGTG
Found at i:65060200 original size:81 final size:80
Alignment explanation
Indices: 65060051--65060206 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 80
65060041 AAGCGTCCTG
*
65060051 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
65060116 ACAATTATCTGATCTA
66 ACAA-TATCTGATCTA
* * *
65060132 GTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTTG-CACA-ATATCTGTATCTGGTGACT-T
1 GTGGCTATGCCACAAT-TATCTGATCTGGTGGCTC-TGCCACATATATCTGT-CCTGGTGACTAT
*
65060193 CGTCACAATATCTG
63 -GCCACAATATCTG
65060207 GCAGCCTCGC
Statistics
Matches: 66, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
80 17 0.26
81 47 0.71
82 2 0.03
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
ACAATATCTGATCTA
Found at i:65062450 original size:289 final size:281
Alignment explanation
Indices: 65061897--65062423 Score: 776
Period size: 289 Copynumber: 1.9 Consensus size: 281
65061887 TGCTATAATG
*
65061897 AGTGGCAATCGATGTTTGCGACTAGTTACACCAACAATAAACAATATTTGTTTTAGTTTTTTAAG
1 AGTGACAATCGATGTTTGCGACTAGTTACACCAACAATAAACAATATTTGTTTTAGTTTTTTAAG
65061962 TGTCACATATTTTCATTTTTCATATTTTAAAAATCAATTTTTATTTTTTTAACCTGTTGAGGATA
66 TGTCACATATTTTCATTTTTCATATTTTAAAAATCAATTTTTATTTTTTTAACCTGTTGAGGATA
65062027 AACTCAATTAAATAACGAATAAGTAAAATAATAAAGAAATCGAAAAGATCGAACACAAATATTTT
131 AACTCAATTAAATAACGAATAAGTAAAATAATAAAGAAATCGAAAAGATCGAACAC----A---T
*** * * * ***
65062092 ACGTGAAAAAAAATTCTTCAAAGAAGATAAAAAATCATGGGTAAATATAATTTCACTATAACAAA
189 A-GTGAAAAAAAATGAATAAAAGAAGATAAAAAATAAAGAACAAATATAATTTCACTATAACAAA
65062157 AAAAATGAAGAGTACAAAGATGGAGATAA
253 AAAAATGAAGAGTACAAAGATGGAGATAA
* *
65062186 AGTGACAATCGATGTTTGCTACTAGTTACACCAACACTAAACAATATTTGTTTTAGTTTTTTAAG
1 AGTGACAATCGATGTTTGCGACTAGTTACACCAACAATAAACAATATTTGTTTTAGTTTTTTAAG
*
65062251 TGTCACATATTTTCATTTTTCATATTTTAAAAATCAATTTTTATTTTTTTAACCTGTTGGGGATA
66 TGTCACATATTTTCATTTTTCATATTTTAAAAATCAATTTTTATTTTTTTAACCTGTTGAGGATA
*
65062316 AACTCGATTAAATAACGAATAAGTAAAATAATAAAGAAATCGAAAAGATCGAACAC-T-GTGAAA
131 AACTCAATTAAATAACGAATAAGTAAAATAATAAAGAAATCGAAAAGATCGAACACATAGTG-AA
* *
65062379 AATAAAATAGAATAAAATAA-AT-AAAAATAAAGAACACATA-AATTT
195 AA-AAAAT-GAATAAAAGAAGATAAAAAATAAAGAACAAATATAATTT
65062424 TACGTGGAAA
Statistics
Matches: 219, Mismatches: 16, Indels: 16
0.87 0.06 0.06
Matches are distributed among these distances:
279 8 0.04
280 16 0.07
281 8 0.04
282 6 0.03
289 181 0.83
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (281 bp):
AGTGACAATCGATGTTTGCGACTAGTTACACCAACAATAAACAATATTTGTTTTAGTTTTTTAAG
TGTCACATATTTTCATTTTTCATATTTTAAAAATCAATTTTTATTTTTTTAACCTGTTGAGGATA
AACTCAATTAAATAACGAATAAGTAAAATAATAAAGAAATCGAAAAGATCGAACACATAGTGAAA
AAAAATGAATAAAAGAAGATAAAAAATAAAGAACAAATATAATTTCACTATAACAAAAAAAATGA
AGAGTACAAAGATGGAGATAA
Found at i:65073535 original size:9 final size:9
Alignment explanation
Indices: 65073521--65073549 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
65073511 TTTTGCTTTC
65073521 TTTCTTTTT
1 TTTCTTTTT
65073530 TTTCTTTTT
1 TTTCTTTTT
65073539 TTT-TTTTT
1 TTTCTTTTT
65073547 TTT
1 TTT
65073550 TTGTTCTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:65073535 original size:13 final size:12
Alignment explanation
Indices: 65073517--65073551 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
65073507 CTGTTTTTGC
65073517 TTTCTTTCTTTTT
1 TTTCTTT-TTTTT
65073530 TTTCTTTTTTTT
1 TTTCTTTTTTTT
65073542 TTT-TTTTTTT
1 TTTCTTTTTTT
65073552 GTTCTTTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 7 0.32
12 8 0.36
13 7 0.32
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (12 bp):
TTTCTTTTTTTT
Found at i:65073549 original size:17 final size:17
Alignment explanation
Indices: 65073510--65073547 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
65073500 CTTGTCACTG
*
65073510 TTTTTGCTTTCTTTCTT
1 TTTTTTCTTTCTTTCTT
65073527 TTTTTTCTTT-TTT-TT
1 TTTTTTCTTTCTTTCTT
65073542 TTTTTT
1 TTTTTT
65073548 TTTTGTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 3 0.15
17 9 0.45
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.87
Consensus pattern (17 bp):
TTTTTTCTTTCTTTCTT
Found at i:65082707 original size:35 final size:35
Alignment explanation
Indices: 65082661--65082731 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
65082651 TAATAAACAC
*
65082661 TTAATCAAAATTGTACCTTTTTGATACGTCTAGGA
1 TTAATCAAAATTATACCTTTTTGATACGTCTAGGA
65082696 TTAATCAAAATTATACCTTTTTGATACGTCTAGGA
1 TTAATCAAAATTATACCTTTTTGATACGTCTAGGA
65082731 T
1 T
65082732 GAACGCTTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (35 bp):
TTAATCAAAATTATACCTTTTTGATACGTCTAGGA
Found at i:65093276 original size:3 final size:3
Alignment explanation
Indices: 65093268--65093324 Score: 98
Period size: 3 Copynumber: 19.3 Consensus size: 3
65093258 CATGAATTTT
65093268 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT-
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
*
65093315 TTT TTG TTG T
1 TTG TTG TTG T
65093325 AGCTGCTGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (3 bp):
TTG
Found at i:65097275 original size:13 final size:13
Alignment explanation
Indices: 65097257--65097282 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65097247 TGATAAATAA
65097257 AAATAGAAGTAGC
1 AAATAGAAGTAGC
65097270 AAATAGAAGTAGC
1 AAATAGAAGTAGC
65097283 TTTTTTAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.23, T:0.15
Consensus pattern (13 bp):
AAATAGAAGTAGC
Found at i:65102905 original size:5 final size:5
Alignment explanation
Indices: 65102895--65102928 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
65102885 TTGTCTATCT
* *
65102895 TTTTG TTTTG TTTTG TCTTG TTTTT TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
65102929 TACATTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (5 bp):
TTTTG
Found at i:65102908 original size:22 final size:20
Alignment explanation
Indices: 65102883--65102928 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
65102873 CACATTTCTT
65102883 TTTTGTCTATCTTTTTGTTTTG
1 TTTTGTCT-TCTTTTT-TTTTG
*
65102905 TTTTGTCTTGTTTTTTTTTG
1 TTTTGTCTTCTTTTTTTTTG
65102925 TTTT
1 TTTT
65102929 TACATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
21 6 0.26
22 8 0.35
ACGTcount: A:0.02, C:0.07, G:0.13, T:0.78
Consensus pattern (20 bp):
TTTTGTCTTCTTTTTTTTTG
Found at i:65107463 original size:46 final size:45
Alignment explanation
Indices: 65107396--65107562 Score: 196
Period size: 47 Copynumber: 3.6 Consensus size: 45
65107386 CGCCCCTAAG
*
65107396 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
65107442 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * *
65107489 CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
65107534 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
65107563 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 2 0.02
45 28 0.27
46 28 0.27
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:65107511 original size:47 final size:48
Alignment explanation
Indices: 65107392--65107566 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 48
65107382 AACCCGCCCC
* * * *
65107392 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-ACATCCA
**
65107438 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTACATCCA
* *
65107486 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTACATCCA
*
65107530 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
65107567 TCAACCATCC
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 5 0.05
43 2 0.02
44 3 0.03
45 29 0.27
46 31 0.28
47 29 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (48 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTACATCCA
Found at i:65107555 original size:92 final size:93
Alignment explanation
Indices: 65107397--65107566 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
65107387 GCCCCTAAGT
* *
65107397 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65107462 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
65107490 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65107554 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65107567 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 43 0.59
93 30 0.41
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65108019 original size:30 final size:30
Alignment explanation
Indices: 65107985--65108044 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65107975 ATTTAATACG
65107985 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
65108015 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65108045 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65115328 original size:40 final size:40
Alignment explanation
Indices: 65115269--65115476 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
65115259 CAATTGAATG
* * * *
65115269 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
65115309 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
65115349 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * ***
65115389 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGCCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
65115429 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
65115469 ATATCCGG
1 ATATCCGG
65115477 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:65115407 original size:80 final size:80
Alignment explanation
Indices: 65115270--65115476 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
65115260 AATTGAATGA
* * ** * * *
65115270 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
65115335 TTGTGCTAGTGAC-TAC
66 TTGTGC-A-AGACGTAC
* * * *
65115351 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
* *
65115415 TTGTGCAAGCCGTTC
66 TTGTGCAAGACGTAC
* *
65115430 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
65115477 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 2 0.02
79 3 0.03
80 102 0.95
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGACGTAC
Found at i:65118261 original size:46 final size:46
Alignment explanation
Indices: 65118194--65118364 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
65118184 CGCCCCTAAG
* * * *
65118194 TGAACGCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
* * * **
65118240 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTAGCATCCAT-AAA
* ** * *
65118287 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
65118333 TGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
65118365 CTCAACCATC
Statistics
Matches: 100, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 64 0.64
47 36 0.36
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
Found at i:65118310 original size:93 final size:93
Alignment explanation
Indices: 65118195--65118365 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
65118185 GCCCCTAAGT
***
65118195 GAACGCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACGCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65118260 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
65118288 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACGCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65118353 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65118366 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACGCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65118819 original size:30 final size:30
Alignment explanation
Indices: 65118785--65118844 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
65118775 ATTTAATACG
*
65118785 AACTTTGGAAAAATTATACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
65118815 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65118845 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65120007 original size:93 final size:93
Alignment explanation
Indices: 65119897--65120067 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
65119887 GCCCCTAAGT
*
65119897 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65119962 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
65119990 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65120055 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65120068 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65120064 original size:46 final size:46
Alignment explanation
Indices: 65119892--65120064 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
65119882 AACCCGCCCC
* * *
65119892 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
65119938 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
65119986 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
65120031 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65120065 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:65121419 original size:55 final size:55
Alignment explanation
Indices: 65121351--65121455 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 55
65121341 CCAGCCCATA
65121351 TCCTCCCTCGTGTAACTCCCTGAGTAGGGTCACACAGACGTGTCACACACTCGTG
1 TCCTCCCTCGTGTAACTCCCTGAGTAGGGTCACACAGACGTGTCACACACTCGTG
** * *
65121406 TCCTCACC-CGTGTAACTTTCTGAGTAGGGTCACACAGTCGTGTCGCACAC
1 TCCTC-CCTCGTGTAACTCCCTGAGTAGGGTCACACAGACGTGTCACACAC
65121456 CGATATGTCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
55 43 0.96
56 2 0.04
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (55 bp):
TCCTCCCTCGTGTAACTCCCTGAGTAGGGTCACACAGACGTGTCACACACTCGTG
Found at i:65122568 original size:24 final size:25
Alignment explanation
Indices: 65122540--65122603 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 25
65122530 TGAACATCAT
65122540 TCAAC-TCACAATTGAGTAGATTCA
1 TCAACATCACAATTGAGTAGATTCA
65122564 TCAACATCACATATAATTGAGTAGATTCA
1 TCAACATCAC----AATTGAGTAGATTCA
65122593 TCAACATCACA
1 TCAACATCACA
65122604 TATAATTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
24 5 0.14
25 5 0.14
29 25 0.71
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (25 bp):
TCAACATCACAATTGAGTAGATTCA
Found at i:65122582 original size:29 final size:29
Alignment explanation
Indices: 65122549--65122610 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
65122539 TTCAACTCAC
65122549 AATTGAGTAGATTCATCAACATCACATAT
1 AATTGAGTAGATTCATCAACATCACATAT
65122578 AATTGAGTAGATTCATCAACATCACATAT
1 AATTGAGTAGATTCATCAACATCACATAT
65122607 AATT
1 AATT
65122611 TCATTCATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (29 bp):
AATTGAGTAGATTCATCAACATCACATAT
Found at i:65123979 original size:5 final size:5
Alignment explanation
Indices: 65123969--65123993 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
65123959 AAAACTTTTT
65123969 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
65123994 TCAAATTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:65127533 original size:25 final size:25
Alignment explanation
Indices: 65127495--65127543 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
65127485 CCATATGGTT
65127495 GTGTCACACACCTGTGTGCTAGGTC
1 GTGTCACACACCTGTGTGCTAGGTC
* *
65127520 GTGTTACACGCCTGTGTGCTAGGT
1 GTGTCACACACCTGTGTGCTAGGT
65127544 TATGTAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.14, C:0.24, G:0.31, T:0.31
Consensus pattern (25 bp):
GTGTCACACACCTGTGTGCTAGGTC
Found at i:65131053 original size:50 final size:50
Alignment explanation
Indices: 65130931--65131172 Score: 240
Period size: 50 Copynumber: 4.8 Consensus size: 50
65130921 AGCTGAAGCT
* * * *
65130931 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACA-TTCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT-GACCTAACC
* * * * *
65130980 ATCCGGTACATGTAGTAGCCTGCACATAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
65131030 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * * *
65131081 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * *
65131130 AGTATGGTACACGTAGTAGCCTTCACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
65131173 TACTCACAAT
Statistics
Matches: 157, Mismatches: 30, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
49 38 0.24
50 79 0.50
51 40 0.25
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:65133026 original size:31 final size:31
Alignment explanation
Indices: 65132991--65133054 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
65132981 CTTTTTCATA
*
65132991 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
65133022 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
65133053 TT
1 TT
65133055 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:65133166 original size:41 final size:42
Alignment explanation
Indices: 65133079--65133168 Score: 119
Period size: 41 Copynumber: 2.2 Consensus size: 42
65133069 GGCCCATAGG
* ** *
65133079 CCCATTTCAATATCACATATAATGTCAATGAAAGAATGCAAG
1 CCCATTTCAATATCACATAGAATACCAATGAAAGAATGCAAA
* *
65133121 CCCATTTCAATATCACAT-GAATACCAATGAATGTATGCAAA
1 CCCATTTCAATATCACATAGAATACCAATGAAAGAATGCAAA
65133162 CCCATTT
1 CCCATTT
65133169 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 24 0.57
42 18 0.43
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (42 bp):
CCCATTTCAATATCACATAGAATACCAATGAAAGAATGCAAA
Found at i:65133376 original size:24 final size:24
Alignment explanation
Indices: 65133308--65133572 Score: 385
Period size: 24 Copynumber: 11.2 Consensus size: 24
65133298 GGCCTTGCCT
*
65133308 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
65133332 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
65133355 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
65133379 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
65133402 CTTTTGATAACAGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
**
65133426 CTTTTAATAACTGGGGTGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* * *
65133450 CTTTTGATCATTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
65133474 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
65133497 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
65133521 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
65133545 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
65133568 CTTTT
1 CTTTT
65133573 GCACTTCCTC
Statistics
Matches: 214, Mismatches: 23, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
23 84 0.39
24 130 0.61
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:65133439 original size:71 final size:71
Alignment explanation
Indices: 65133308--65133573 Score: 408
Period size: 71 Copynumber: 3.7 Consensus size: 71
65133298 GGCCTTGCCT
* * *
65133308 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCCCTTTTGATCACTGGGGCA
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
65133373 TAAGCC
66 TAAGCC
* * * *
65133379 C-TTTAATAACTGGGGCATAAGCCCTTTTGATAACAGGGGCATAAGCCCTTTTAATAACTGGGGT
1 CTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGC
*
65133443 GTAAGCC
65 ATAAGCC
* * *
65133450 CTTTTGATCATTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
65133515 TAAGCC
66 TAAGCC
*
65133521 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTG
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTG
65133574 CACTTCCTCC
Statistics
Matches: 175, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
70 22 0.13
71 133 0.76
72 20 0.11
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (71 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
TAAGCC
Found at i:65133573 original size:47 final size:47
Alignment explanation
Indices: 65133308--65133571 Score: 404
Period size: 47 Copynumber: 5.6 Consensus size: 47
65133298 GGCCTTGCCT
* * *
65133308 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
65133355 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* **
65133402 CTTTTGATAACAGGGGCATAAGCCCTTTTAATAACTGGGGTGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
* *
65133450 CTTTTGATCATTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
65133497 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
*
65133545 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTGATAACTGGGGCATAAGCCCTTT
65133572 TGCACTTCCT
Statistics
Matches: 198, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
46 3 0.02
47 131 0.66
48 64 0.32
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:65133646 original size:20 final size:20
Alignment explanation
Indices: 65133618--65133688 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
65133608 GCATTTATGA
*
65133618 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
65133638 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
65133658 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
65133678 ACTTATCATGT
1 ACATATCATGT
65133689 TTATAAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:65133653 original size:11 final size:11
Alignment explanation
Indices: 65133623--65133677 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
65133613 TATGAACATC
65133623 TCATGTGCATA
1 TCATGTGCATA
*
65133634 TCA--TACATA
1 TCATGTGCATA
65133643 TCATGTGCATA
1 TCATGTGCATA
* *
65133654 TCA--TACATG
1 TCATGTGCATA
65133663 TCATGTGCATA
1 TCATGTGCATA
65133674 TCAT
1 TCAT
65133678 ACTTATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:65134778 original size:27 final size:27
Alignment explanation
Indices: 65134717--65134780 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
65134707 GGCATATTCG
*
65134717 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
65134744 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
*
65134771 TCTTTTTACC
1 TCATTTTACC
65134781 TTTTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:65135047 original size:54 final size:54
Alignment explanation
Indices: 65134831--65135049 Score: 197
Period size: 54 Copynumber: 4.0 Consensus size: 54
65134821 TTGGTAAATC
* * ** *
65134831 TACAAACCAAGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAACTAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTT-TAGTAA-TTT
* * * * ** * * * *
65134886 TAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATAT
1 TACAAACT-AAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
* * * * * *
65134941 TACAAATTGAGGGTATTTCGGAAATTTCACAAACCAAGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
* *
65134995 TACAAACTAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
65135049 T
1 T
65135050 GTAAATCGAG
Statistics
Matches: 131, Mismatches: 31, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
54 83 0.63
55 14 0.11
56 34 0.26
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (54 bp):
TACAAACTAAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
Found at i:65135061 original size:27 final size:27
Alignment explanation
Indices: 65134838--65135117 Score: 152
Period size: 27 Copynumber: 10.3 Consensus size: 27
65134828 ATCTACAAAC
* * * *
65134838 CAAGGGTATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
65134865 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
65134894 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * * *
65134921 CAGGGGTATTTTGGTAATATTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** ** * * * *
65134948 TGAGGGTATTTCGGAAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
65134975 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * *
65135001 CTAGGGGTATTTTAGTAATTTTACAAAC
1 C-AAGGGTATTTTAGTAATTTTATAAAT
*
65135029 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* ****
65135056 CGAGGGTAAAACAGTAATTTTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* **** *
65135083 CAAAGGTAAAACAGTAATCTTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
65135110 CGAGGGTA
1 CAAGGGTA
65135118 AAACAGTAAT
Statistics
Matches: 202, Mismatches: 44, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
26 2 0.01
27 170 0.84
28 15 0.07
29 15 0.07
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:65135062 original size:81 final size:79
Alignment explanation
Indices: 65134819--65135063 Score: 181
Period size: 81 Copynumber: 3.0 Consensus size: 79
65134809 TACAATGGTG
* * * * * ** *
65134819 TTTTGGTAAATCTACAAACCAAGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCTA-TAAT
1 TTTTGGTAATTTTACAAA-CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT-TAGTAAT
65134883 TTTTAGAAAGTCAAGGGTA
64 TTTT--AAA-TCAAGGGTA
* * * *** ** *
65134902 TTTCT-GTAACTTTGTA-AATCAGGGGTATTTTGGTAATATTACAAATTGAGGGTATTTCGGAAA
1 TTT-TGGTAA-TTT-TACAAACAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAA
** *
65134965 TTTCACAAACCAAGGGTA
63 TTT-TTAAATCAAGGGTA
65134983 TTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATT
1 TTTTGGTAATTTTACAAAC-AGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATT
*
65135048 TTGTAAATCGAGGGTA
65 TT-TAAATCAAGGGTA
65135064 AAACAGTAAT
Statistics
Matches: 120, Mismatches: 33, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
79 2 0.02
80 7 0.06
81 63 0.52
82 3 0.03
83 39 0.32
84 4 0.03
85 2 0.02
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (79 bp):
TTTTGGTAATTTTACAAACAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
TTAAATCAAGGGTA
Found at i:65135063 original size:54 final size:54
Alignment explanation
Indices: 65134831--65135077 Score: 192
Period size: 54 Copynumber: 4.5 Consensus size: 54
65134821 TTGGTAAATC
* * * ** *
65134831 TACAAACCAAGGGTATTTCAATAATTTTGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAATCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTT-TAGTAA-TTT
* * * * ** * * * *
65134886 TAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATAT
1 TACAAA-TCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
* * * * *
65134941 TACAAATTGAGGGTATTTCGGAAATTTCACAAACCAAGGGTATTTTGGTAATTT
1 TACAAATCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
* *
65134995 TACAAA-CTAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
1 TACAAATCGA-GGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
** ***
65135049 TGTAAATCGAGGGTAAAACAGTAATTTTA
1 TACAAATCGAGGGTATTTCAGTAATTTTA
65135078 TAAATCAAAG
Statistics
Matches: 152, Mismatches: 36, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
53 1 0.01
54 101 0.66
55 15 0.10
56 35 0.23
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (54 bp):
TACAAATCGAGGGTATTTCAGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
Found at i:65135099 original size:54 final size:54
Alignment explanation
Indices: 65135041--65135253 Score: 257
Period size: 54 Copynumber: 3.9 Consensus size: 54
65135031 AGGGTATTTT
* * * *
65135041 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTATAAATCAAAGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* *
65135095 AGTAATCTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
* * * * * *
65135149 GGTAATTTTGTAAGTCAATGGTAAAAC-GATAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
65135203 AATAATTATGTAAATCGGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AGTAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
65135254 CTTTGGTAAT
Statistics
Matches: 133, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 104 0.78
55 27 0.20
56 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (54 bp):
AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:65135099 original size:81 final size:81
Alignment explanation
Indices: 65135014--65135246 Score: 209
Period size: 81 Copynumber: 2.9 Consensus size: 81
65135004 GGGGTATTTT
* **** *
65135014 AGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTAT
1 AGTAATCTTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTAT
65135079 AAATCAAAGGTAAAAC
66 AAATCAAAGGTAAAAC
* * * * *
65135095 AGTAATCTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGT
1 AGTAATCTTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTAT
* *
65135160 AAGTCAATGGTAAAAC
66 AAATCAAAGGTAAAAC
** * ** * * * * *
65135176 -GATAAT-TATGTAAATCGGGGGTAAAACAATAATTATGTAAATCGGGGGGTAAAACGGTAATTC
1 AG-TAATCT-TACAAACCAAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTT
*
65135239 TGTAAATC
63 TATAAATC
65135247 GAGGGTACTT
Statistics
Matches: 129, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
80 2 0.02
81 103 0.80
82 24 0.19
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (81 bp):
AGTAATCTTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTAT
AAATCAAAGGTAAAAC
Found at i:65135118 original size:27 final size:27
Alignment explanation
Indices: 65135041--65135253 Score: 232
Period size: 27 Copynumber: 7.9 Consensus size: 27
65135031 AGGGTATTTT
*
65135041 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
* * * *
65135068 AGTAATTTTATAAATCAAAGGTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
*
65135095 AGTAATCT-TATAAATCGAGGGTAAAAC
1 AGTAAT-TATGTAAATCGAGGGTAAAAC
*
65135122 AGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
* * * * *
65135149 GGTAATTTTGTAAGTCAATGGTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
*
65135176 -GATAATTATGTAAATCGGGGGTAAAAC
1 AG-TAATTATGTAAATCGAGGGTAAAAC
* *
65135203 AATAATTATGTAAATCGGGGGGTAAAAC
1 AGTAATTATGTAAATC-GAGGGTAAAAC
* *
65135231 GGTAATTCTGTAAATCGAGGGTA
1 AGTAATTATGTAAATCGAGGGTA
65135254 CTTTGGTAAT
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.01
27 133 0.83
28 25 0.16
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTATGTAAATCGAGGGTAAAAC
Found at i:65135280 original size:27 final size:27
Alignment explanation
Indices: 65135259--65135348 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
65135249 GGGTACTTTG
*
65135259 GTAATTTTACAAGTTGAAGGTATTTCA
1 GTAATTTTACAAATTGAAGGTATTTCA
*
65135286 GTAATTTTACAAATTGAGGGTATTTCA
1 GTAATTTTACAAATTGAAGGTATTTCA
* * *
65135313 GTATTTTTACAAACT-AAGGGTATTTCG
1 GTAATTTTACAAATTGAA-GGTATTTCA
65135340 GTAATTTTA
1 GTAATTTTA
65135349 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
GTAATTTTACAAATTGAAGGTATTTCA
Found at i:65135305 original size:54 final size:54
Alignment explanation
Indices: 65135242--65135348 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
65135232 GTAATTCTGT
* **
65135242 AAATCGAGGGTACTTT-GGTAATTTTACAAGTTGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAAACT-AAGGGTATTTCAGTAATTTTAC
* * *
65135296 AAATTGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTA
65135349 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 5 0.11
54 40 0.89
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTAC
Found at i:65135362 original size:27 final size:27
Alignment explanation
Indices: 65135259--65135363 Score: 97
Period size: 27 Copynumber: 3.9 Consensus size: 27
65135249 GGGTACTTTG
**
65135259 GTAATTTTACAAGTTGAAG-GTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
65135286 GTAATTTTACAAATTGAGGGTATTTCA
1 GTAATTTTACAAACTAAGAGTATTTCA
* * *
65135313 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
65135340 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
65135364 CTAAACAGGG
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.03
27 58 0.87
28 7 0.10
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:65142888 original size:40 final size:40
Alignment explanation
Indices: 65142839--65142990 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
65142829 CAGAGTTTAA
** *
65142839 CCGGATATAGCT-ACTCATTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCACACAAATGCCTTCGGGACATAAC
* * *
65142879 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACATAAC
* * * **
65142919 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGA-CATAAC
* * * *
65142959 CCGGATTTAGTAACTCGCACGAATGCCATCGG
1 CCGGATATAGTAACTCACACAAATGCCTTCGG
65142991 ATCTTAGTCC
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.04
40 92 0.95
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATGCCTTCGGGACATAAC
Found at i:65142970 original size:80 final size:80
Alignment explanation
Indices: 65142858--65143083 Score: 271
Period size: 80 Copynumber: 2.8 Consensus size: 80
65142848 GCTACTCATT
* * *
65142858 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
65142921 GGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
* * *
65142938 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACGAATGCCATC-GGATCTTAGTCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
65143002 AAATTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * * * *
65143018 CGAATGCCTTCGGATCTTAGTCCAGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
65143082 GA
65 GA
65143084 CATCATTCGA
Statistics
Matches: 124, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
79 6 0.05
80 106 0.85
81 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:65142991 original size:40 final size:40
Alignment explanation
Indices: 65142858--65143083 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
65142848 GCTACTCATT
* *
65142858 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
**
65142898 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
65142938 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * * *
65142978 CGAATGCCATCGGATCTTAGTCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * * * *
65143018 CGAATGCCTTCGGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
65143059 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
65143084 CATCATTCGA
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 149 0.91
41 12 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:65151289 original size:40 final size:40
Alignment explanation
Indices: 65151064--65151289 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
65151054 GCTACTCGTT
* * *
65151064 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATATAGTAACTTGCA
* * * *
65151104 CAAATGCCTTCGGGA-CTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATATAGTAACTTGCA
* *
65151144 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTTGCA
* *
65151184 CGAATGCCTTCGGATCTTAGTCCGGA-ATTAGTAACTTGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATA-TAGTAACTTGCA
* * *
65151224 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTT-GCA
65151265 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
65151290 CATCATTCGA
Statistics
Matches: 167, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 154 0.92
41 10 0.06
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATATAGTAACTTGCA
Found at i:65154231 original size:50 final size:49
Alignment explanation
Indices: 65154106--65154345 Score: 178
Period size: 50 Copynumber: 4.8 Consensus size: 49
65154096 AGCCGAAGCT
* * * *
65154106 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTAAACACGCGACCAACA
* * * * * *
65154155 ATCCGGTACACGTAGTAGCCTGCACTTAGTATTAAACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTAAACACGCGACC-AACA
* * * * *
65154205 ATCTGATACACGTAGTAGCCTACACTTAGTACTACACGCGTGATCGAAGTC-
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTAAACACGCGA-CCAA--CA
* * * * *
65154256 AT-TGAGTACGCATAGTGGCCTGCACTTAGTACTATACACGCGACTTAACA
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTAAACACGCGAC-CAACA
* * * * * *
65154306 GTATGGTACACATAGTAGCCTACACTTAGTACTACACACG
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTAAACACG
65154346 TGTACTCACA
Statistics
Matches: 151, Mismatches: 32, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
49 38 0.25
50 75 0.50
51 37 0.25
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTAAACACGCGACCAACA
Found at i:65157456 original size:17 final size:18
Alignment explanation
Indices: 65157414--65157462 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65157404 AGTTGAAAAG
65157414 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65157433 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65157450 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65157463 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65158351 original size:40 final size:40
Alignment explanation
Indices: 65158285--65158451 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
65158275 AAATTGAATG
* * *
65158285 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
65158324 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
65158364 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65158404 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65158444 ATATCCGG
1 ATATCCGG
65158452 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65165463 original size:17 final size:18
Alignment explanation
Indices: 65165421--65165469 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65165411 AGTTGAAAAG
65165421 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65165440 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65165457 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65165470 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65166453 original size:40 final size:40
Alignment explanation
Indices: 65166291--65166455 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
65166281 AAATTGAATG
* * **
65166291 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* *
65166330 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG--T
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
65166368 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
65166408 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
65166448 ATATCCGG
1 ATATCCGG
65166456 TTATATTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
37 3 0.03
38 30 0.29
39 14 0.13
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:65173460 original size:17 final size:18
Alignment explanation
Indices: 65173418--65173466 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65173408 AGTTGAAAAG
65173418 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65173437 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65173454 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65173467 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65174354 original size:40 final size:39
Alignment explanation
Indices: 65174288--65174453 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
65174278 AAATTGAATG
* * *
65174288 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
65174327 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
65174366 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
65174406 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
65174446 ATATCCGG
1 ATATCCGG
65174454 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:65176600 original size:13 final size:13
Alignment explanation
Indices: 65176582--65176607 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65176572 TTGAATCCAT
65176582 ACCAAAACAATCA
1 ACCAAAACAATCA
65176595 ACCAAAACAATCA
1 ACCAAAACAATCA
65176608 TAAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:65178738 original size:26 final size:26
Alignment explanation
Indices: 65178702--65178753 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
65178692 GTTCTTGATC
*
65178702 TAATACAATTCAAATTCAACCATTCA
1 TAATACAATTCAAAGTCAACCATTCA
*
65178728 TAATACAATTCAAGGTCAACCATTCA
1 TAATACAATTCAAAGTCAACCATTCA
65178754 ATCATTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.29
Consensus pattern (26 bp):
TAATACAATTCAAAGTCAACCATTCA
Found at i:65182147 original size:40 final size:40
Alignment explanation
Indices: 65182087--65182232 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 40
65182077 ATTTGATGTG
65182087 GTATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATT
1 GTATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATT
* *
65182127 GTATTCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATT
1 GTATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATT
* * * *
65182167 GTATCCGGGCATAAAGACCC-TCAGGCT-TCGTGTTGGAATG
1 GTATCCGGGCTTAAAGACCCGT-AGGCTAT-ATGCTGGAATT
*
65182207 GTATCTGGG-TTAAAGACCCGTAGGCT
1 GTATCCGGGCTTAAAGACCCGTAGGCT
65182233 TGCGCTAGAA
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GTATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATT
Found at i:65188632 original size:15 final size:15
Alignment explanation
Indices: 65188612--65188642 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
65188602 TTTTGGAAAG
65188612 AAAATTTTGTTGTTA
1 AAAATTTTGTTGTTA
65188627 AAAATTTTGTTGTTA
1 AAAATTTTGTTGTTA
65188642 A
1 A
65188643 TTGAGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (15 bp):
AAAATTTTGTTGTTA
Found at i:65189915 original size:40 final size:40
Alignment explanation
Indices: 65189860--65189962 Score: 179
Period size: 40 Copynumber: 2.6 Consensus size: 40
65189850 ATTTGATGTG
* *
65189860 GTATCCGGGCTTAAAGACCCGGAGGCTATATGCTGGAATT
1 GTATCCGGGCTTAAAGACCCGCAGGCTATACGCTGGAATT
65189900 GTATCCGGGCTTAAAGACCCGCAGGCTATACGCTGGAATT
1 GTATCCGGGCTTAAAGACCCGCAGGCTATACGCTGGAATT
*
65189940 GTATCCGGGCATAAAGACCCGCA
1 GTATCCGGGCTTAAAGACCCGCA
65189963 AGCTTCGTGT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
GTATCCGGGCTTAAAGACCCGCAGGCTATACGCTGGAATT
Found at i:65189977 original size:40 final size:40
Alignment explanation
Indices: 65189860--65190005 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 40
65189850 ATTTGATGTG
* *
65189860 GTATCCGGGCTTAAAGACCCGGAGGCTATATGCTGGAATT
1 GTATCCGGGCTTAAAGACCCGCAGGCTATCTGCTGGAATT
65189900 GTATCCGGGCTTAAAGACCCGCAGGCTATAC-GCTGGAATT
1 GTATCCGGGCTTAAAGACCCGCAGGCTAT-CTGCTGGAATT
* * * *
65189940 GTATCCGGGCATAAAGACCCGCAAGCT-TCGTGTTGGAATG
1 GTATCCGGGCTTAAAGACCCGCAGGCTATC-TGCTGGAATT
* ** *
65189980 GAATCTAGG-TTAAAGACCCGTAGGCT
1 GTATCCGGGCTTAAAGACCCGCAGGCT
65190006 TGCGCTAGAA
Statistics
Matches: 91, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 15 0.16
40 75 0.82
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
GTATCCGGGCTTAAAGACCCGCAGGCTATCTGCTGGAATT
Found at i:65196341 original size:45 final size:45
Alignment explanation
Indices: 65196233--65196587 Score: 466
Period size: 45 Copynumber: 7.9 Consensus size: 45
65196223 TTTTCTCAAA
* * * * * *
65196233 TCACCGGCAT-TTCGCCTGCTAGGCTC-GAGGCCTGATTA-TCATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * * **
65196276 TCACCGGTATTATAGCCTGCTAAGCTCGAAA-GCTAGAATAGTATC
1 TCACCGGCATCATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* * * *
65196321 TCATCGGCATTATAGCCTGCTAGGCTCAAAGCCCCGAATAATATC
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
65196366 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
65196411 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
65196456 TCACCAGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
65196501 TCACCGGCATCATAACCTGATAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
65196546 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
65196588 CAAATCAACG
Statistics
Matches: 276, Mismatches: 31, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
43 9 0.03
44 16 0.06
45 249 0.90
46 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:65204417 original size:28 final size:29
Alignment explanation
Indices: 65204348--65204420 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
65204338 TAATCAACCA
*
65204348 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
*
65204377 CGCACACTTAGTGCCATGCA-TTTCAAGC-
1 CGCACACTTAGTGCCATGCACTTT-AAACT
65204405 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
65204421 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
28 19 0.46
29 22 0.54
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:65212163 original size:29 final size:30
Alignment explanation
Indices: 65212127--65212202 Score: 104
Period size: 29 Copynumber: 2.6 Consensus size: 30
65212117 AATAATCAAC
*
65212127 CACGCACACTTAGTGCCATGTACTTT-AA-A
1 CACGCACACTTAGTGCCATGCA-TTTCAAGA
*
65212156 CACGCACACTTAGTGCCATGCATTTCAAGG
1 CACGCACACTTAGTGCCATGCATTTCAAGA
65212186 C-CGCACACTTAGTGCCA
1 CACGCACACTTAGTGCCA
65212203 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 3 0.07
29 39 0.91
30 1 0.02
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.24
Consensus pattern (30 bp):
CACGCACACTTAGTGCCATGCATTTCAAGA
Found at i:65214375 original size:29 final size:29
Alignment explanation
Indices: 65214341--65214416 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
65214331 TACTCGATCA
* *
65214341 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCATATAATTTAAGCC
* * **
65214370 CGCACACATAGTGCCATATAATTTGAGTT
1 CGCACACTTAGTGCCATATAATTTAAGCC
65214399 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
65214417 CATTTCCAGC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAATTTAAGCC
Found at i:65223052 original size:15 final size:14
Alignment explanation
Indices: 65223034--65223076 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
65223024 TTCTGTACCT
65223034 TGGATATCTTTATCA
1 TGGAT-TCTTTATCA
*
65223049 TGGATTCCTTTGTCA
1 TGGATT-CTTTATCA
65223064 TGGATTTCTTTAT
1 TGGA-TTCTTTAT
65223077 TTTGGTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 1 0.04
15 21 0.88
16 2 0.08
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (14 bp):
TGGATTCTTTATCA
Found at i:65227008 original size:30 final size:30
Alignment explanation
Indices: 65226974--65227033 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
65226964 TTCTCGAGCC
* * *
65226974 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
65227004 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
65227034 CGTATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:65237260 original size:42 final size:42
Alignment explanation
Indices: 65237212--65237362 Score: 196
Period size: 42 Copynumber: 3.6 Consensus size: 42
65237202 CTGAAATTAT
* * *
65237212 GTGTAAGACCATATTTGAGATATGACATCGATATGAGACTTC
1 GTGTAAGACCATATCTGAGATATGGCATCGATACGAGACTTC
*
65237254 GTGTAAGACCATATCTGGGATATGGCATCGATACGAGACTTC
1 GTGTAAGACCATATCTGAGATATGGCATCGATACGAGACTTC
* * *
65237296 GTGTAAGACCATAGCT-AGGCTATTGGCATCGATACGAGATTTC
1 GTGTAAGACCATATCTGA-GATA-TGGCATCGATACGAGACTTC
* *
65237339 ATGTAAGACCATATTTGAGATATG
1 GTGTAAGACCATATCTGAGATATG
65237363 TCATTGGTAT
Statistics
Matches: 94, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 58 0.62
43 35 0.37
44 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGATATGGCATCGATACGAGACTTC
Found at i:65242220 original size:31 final size:31
Alignment explanation
Indices: 65242049--65242219 Score: 243
Period size: 31 Copynumber: 5.5 Consensus size: 31
65242039 TTTAACGGTT
* *
65242049 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* * * *
65242080 ACTAGGCAGAAGCCTAATCATAAATCATATT
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65242111 ACTGGGCCAAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65242142 ATTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
65242173 TCTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65242204 ACTGGGTCGAAGCCTT
1 ACTGGGCCGAAGCCTT
65242220 TACTGTAAAC
Statistics
Matches: 122, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 122 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:65242495 original size:25 final size:24
Alignment explanation
Indices: 65242426--65242507 Score: 105
Period size: 24 Copynumber: 3.4 Consensus size: 24
65242416 CTAGAGGCCT
*
65242426 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
65242450 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
65242474 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-GATAAACTGGGGCA-A
65242500 A-CCCTTTT
1 AGCCCTTTT
65242508 AGCACTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
23 7 0.13
24 24 0.45
25 20 0.38
26 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:65242559 original size:16 final size:16
Alignment explanation
Indices: 65242538--65242568 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65242528 AACCCAACCC
*
65242538 ATGCAGCATGTCATGT
1 ATGCAGAATGTCATGT
65242554 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
65242569 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:65243404 original size:27 final size:26
Alignment explanation
Indices: 65243313--65243396 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 26
65243303 GGGCATATTC
* *
65243313 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGT-TTACG
65243340 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGG-TTTACG
65243367 GTCACTTTACCCTACAGGGGATTTACG
1 GTCACTTTACCCTACAGGGG-TTTACG
65243394 GTC
1 GTC
65243397 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGGTTTACG
Found at i:65245835 original size:31 final size:31
Alignment explanation
Indices: 65245664--65245834 Score: 270
Period size: 31 Copynumber: 5.5 Consensus size: 31
65245654 TTTAACGGTT
* *
65245664 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65245695 ACTGGGCCGAAGCCTTATCATAAATCATATT
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65245726 ACTGGGCCGAAGCCTTATAATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65245757 ACTGGGCCAAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
65245788 TCTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65245819 ACTAGGCCGAAGCCTT
1 ACTGGGCCGAAGCCTT
65245835 TACTGTAAAC
Statistics
Matches: 128, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:65246081 original size:24 final size:25
Alignment explanation
Indices: 65246054--65246122 Score: 97
Period size: 24 Copynumber: 2.8 Consensus size: 25
65246044 CTCTTGTAAT
65246054 AACTGGGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
65246078 AACTGGGGCAAAGCCTTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
65246103 AACTGGGGCATAA-CCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
65246123 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 19 0.47
25 19 0.47
26 2 0.05
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:65247018 original size:27 final size:26
Alignment explanation
Indices: 65246927--65247010 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 26
65246917 GGGCATATTC
* *
65246927 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGT-TTACG
*
65246954 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTAC-AGGGGTTTACG
65246981 GTCACTTTACCCTACAGGGGATTTACG
1 GTCACTTTACCCTACAGGGG-TTTACG
65247008 GTC
1 GTC
65247011 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.08
27 42 0.82
28 5 0.10
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGGTTTACG
Found at i:65247353 original size:27 final size:27
Alignment explanation
Indices: 65247051--65247353 Score: 163
Period size: 27 Copynumber: 11.2 Consensus size: 27
65247041 TCACCCTACA
* * * * * *
65247051 AGGGTGTTTTGGTAAATCTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCT
** *
65247078 AGGGTATTTCAGTAATTTTATAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCT
* * * *
65247104 AAGGTATTTCT-ATAATTTTTAGAAAGTCA
1 AGGGTATTT-TGGTAA-TTTTATAAA-TCT
* *
65247133 AGGGTATTTCT-GTAACTTTGTAAAT-T
1 AGGGTATTT-TGGTAATTTTATAAATCT
*
65247159 AGGGGTATTTTGGTAATTTTACAAAT-T
1 A-GGGTATTTTGGTAATTTTATAAATCT
* * * *
65247186 GAGAGTATTTTTGTAATTTCACAAA-CT
1 -AGGGTATTTTGGTAATTTTATAAATCT
* *
65247213 AGTGGTAATTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCT
* *
65247240 ATGGGTATTTTGGTAATTTTACAGA-CT
1 A-GGGTATTTTGGTAATTTTATAAATCT
** *
65247267 AGGGTATTTTGGTAATTTTATTGATCG
1 AGGGTATTTTGGTAATTTTATAAATCT
* * * *
65247294 AGGGTATTTTGGTAATTTTGTGAACCA
1 AGGGTATTTTGGTAATTTTATAAATCT
* * * *
65247321 AAGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCT
65247348 AGGGTA
1 AGGGTA
65247354 AAACAGTAAT
Statistics
Matches: 221, Mismatches: 44, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
26 37 0.17
27 162 0.73
28 8 0.04
29 14 0.06
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCT
Found at i:65247361 original size:27 final size:27
Alignment explanation
Indices: 65247331--65247461 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
65247321 AAGGTATTTT
*
65247331 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65247358 AGTAATTCCT-TAAATCAAGGGTAAAAT
1 AGTAATT-CTGTAAATCGAGGGTAAAAC
* *
65247385 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65247412 GGTAATTCTGTAAATCGAGGTTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
65247439 GGTAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
65247462 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 86 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:65249945 original size:31 final size:31
Alignment explanation
Indices: 65249774--65249944 Score: 270
Period size: 31 Copynumber: 5.5 Consensus size: 31
65249764 TTTAACGGTT
* *
65249774 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
65249805 ACTGGGCTGAAGCCTTATCATAAATCATATT
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
65249836 ACTGGGCCGAAGCCTTATCGTAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
65249867 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* * *
65249898 TCTGGGCCGAAGCCTTTTCGTAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
65249929 ACTGGGCCGAAGCCTT
1 ACTGGGCCGAAGCCTT
65249945 TACTGTAAAC
Statistics
Matches: 128, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:65250220 original size:25 final size:24
Alignment explanation
Indices: 65250156--65250232 Score: 93
Period size: 25 Copynumber: 3.2 Consensus size: 24
65250146 GGCCTAGCCT
*
65250156 CTTTTAAT-AACTGGGGCAAAACC
1 CTTTTGATAAACTGGGGCAAAACC
*
65250179 CTTTTGATAAACTGGGGCAAAGCC
1 CTTTTGATAAACTGGGGCAAAACC
* **
65250203 CTTTTCGGTAAACTGGGGCTTAACC
1 CTTTT-GATAAACTGGGGCAAAACC
65250228 CTTTT
1 CTTTT
65250233 AGCACTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 7 0.15
24 19 0.41
25 20 0.43
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (24 bp):
CTTTTGATAAACTGGGGCAAAACC
Found at i:65250284 original size:16 final size:16
Alignment explanation
Indices: 65250263--65250293 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65250253 AACCCAACCC
*
65250263 ATGCAGCATGTCATGT
1 ATGCAGAATGTCATGT
65250279 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
65250294 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:65252748 original size:40 final size:39
Alignment explanation
Indices: 65252653--65252835 Score: 145
Period size: 40 Copynumber: 4.6 Consensus size: 39
65252643 TGCTGGAAAT
* * * * **
65252653 TATAACCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
*
65252692 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
65252732 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTCAC
* * * * * *
65252770 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
65252811 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
65252836 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 23, Indels: 11
0.77 0.15 0.07
Matches are distributed among these distances:
38 3 0.03
39 52 0.45
40 58 0.50
41 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:65252776 original size:79 final size:80
Alignment explanation
Indices: 65252658--65252840 Score: 185
Period size: 79 Copynumber: 2.3 Consensus size: 80
65252648 GAAATTATAA
* * * *
65252658 CCGGGTTAAGACCCGAAGGCA-ATGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
65252722 TGCGAGTCATTC-TAT
66 TGCGAGTCA-CCATAT
* * * * *
65252737 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
* *
65252800 GTGCGGGTTACCATAT
65 GTGCGAGTCACCATAT
* * *
65252816 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
65252841 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
78 2 0.02
79 79 0.92
80 5 0.06
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCACCATAT
Found at i:65260800 original size:39 final size:40
Alignment explanation
Indices: 65260746--65260850 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 40
65260736 TGCTGGAAAT
* * * **
65260746 TATAACCGGGTTAAGACCCGAAGGCAAT-GTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* *
65260785 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
*
65260825 TCTATCCGGGCTAAGACCCGAAGGCA
1 TATATCCGGGCTAAGACCCGAAGGCA
65260851 TTTGTGCAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 25 0.44
40 32 0.56
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.20
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
Found at i:65260841 original size:40 final size:39
Alignment explanation
Indices: 65260746--65260927 Score: 136
Period size: 39 Copynumber: 4.6 Consensus size: 39
65260736 TGCTGGAAAT
* * * * **
65260746 TATAACCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
*
65260785 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
65260825 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTCAC
* * * * * *
65260863 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
65260904 CATA-CCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
65260928 GTTTGAACGA
Statistics
Matches: 114, Mismatches: 23, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
38 3 0.03
39 69 0.61
40 40 0.35
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:65260869 original size:79 final size:79
Alignment explanation
Indices: 65260751--65260897 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
65260741 GAAATTATAA
* * *
65260751 CCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 CCGGGCTAAGACCCGAAGGCAATGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCGT
65260816 GCGAGTCATTCTAT
66 GCGAGTCATTCTAT
* * * * * *
65260830 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCA-ATGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
65260893 GTGCG
64 GTGCG
65260898 GGTTACCATA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.02
79 51 0.89
80 5 0.09
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCGT
GCGAGTCATTCTAT
Found at i:65262531 original size:27 final size:27
Alignment explanation
Indices: 65262432--65262515 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
65262422 GGGCATATTC
* *
65262432 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGAT-TTACG
*
65262459 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGATTTACG
65262486 GTCACTTTACCCTACAGGGGATTTACG
1 GTCACTTTACCCTACAGGGGATTTACG
65262513 GTC
1 GTC
65262516 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGATTTACG
Found at i:65262606 original size:27 final size:27
Alignment explanation
Indices: 65262576--65262911 Score: 86
Period size: 27 Copynumber: 12.4 Consensus size: 27
65262566 GTAAATCTAC
*
65262576 AAACCAAGGGTGTTTCAGTAATTTTTT
1 AAACCAAGGGTATTTCAGTAATTTTTT
* *
65262603 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAATTTTT-T
* * *
65262631 AAAGTCAAGGGTATTTCTGTAATTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTTT
** * ** **
65262659 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTTT
*** * ** ***
65262686 AAATTGAGAGTATTTTTGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTTT
* ** **
65262713 AAA-CTAGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTTT
* * ** **
65262740 AAACTATGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTTT
* * * **
65262767 AAACCAGGGGTATTTTAGCAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTTT
* ** *
65262794 AGACC-AGGGTATTTTGGTAATTTATT
1 AAACCAAGGGTATTTCAGTAATTTTTT
* * * ** *
65262820 -GATCGAGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTTT
* *
65262846 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTTT
* * *** * *
65262873 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTTT
*
65262900 AAATCAAGGGTA
1 AAACCAAGGGTA
65262912 AAATAGTAAT
Statistics
Matches: 248, Mismatches: 53, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
25 3 0.01
26 36 0.15
27 183 0.74
28 8 0.03
29 18 0.07
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTTT
Found at i:65262725 original size:54 final size:54
Alignment explanation
Indices: 65262664--65262869 Score: 197
Period size: 54 Copynumber: 3.9 Consensus size: 54
65262654 TTTGTAAATT
* *
65262664 AGGGGTATTTTGGTAATTTTACAAA-T-TGAGAGTATTTTTGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTATG-G-GTATTTTGGTAATTTCACAAACC
* *
65262718 AGTGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTCACAAACC
* * * * *** *
65262772 AGGGGTATTTTAGCAATTTTACAGACCA-GGGTATTTTGGTAATTT-ATTGATC
1 AGGGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTCACAAACC
** * * *
65262824 -GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
1 AG-GGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTT
65262870 TGTAAATCGA
Statistics
Matches: 129, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
51 1 0.01
52 24 0.19
53 33 0.26
54 67 0.52
55 2 0.02
56 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTCACAAACC
Found at i:65262780 original size:81 final size:79
Alignment explanation
Indices: 65262638--65262869 Score: 236
Period size: 81 Copynumber: 2.9 Consensus size: 79
65262628 TAGAAAGTCA
* * ** *
65262638 AGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGAGTATTT
1 AGGGTATTT-TGGTAATTTTATAAACTA-GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTT
* *
65262701 TTGTAATTTCACAAACT
63 TAGTAATTTCACAAACC
*
65262718 AGTGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AG-GGTATTTTGGTAATTTTATAAACTA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* * *
65262783 AGCAATTTTACAGACC
64 AGTAATTTCACAAACC
* * * ** *
65262799 AGGGTATTTTGGTAA-TTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTA-TAAACTAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
65262863 GTAATTT
65 GTAATTT
65262870 TGTAAATCGA
Statistics
Matches: 128, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
79 44 0.34
80 19 0.15
81 64 0.50
82 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (79 bp):
AGGGTATTTTGGTAATTTTATAAACTAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAG
TAATTTCACAAACC
Found at i:65262912 original size:27 final size:27
Alignment explanation
Indices: 65262862--65262992 Score: 172
Period size: 27 Copynumber: 4.9 Consensus size: 27
65262852 AGGGTATTTT
*
65262862 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65262889 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* ** *
65262916 AGTAATTCTATAAATTTAGGATAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
65262943 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65262970 GGTAATTATGTAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
65262993 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:65263000 original size:27 final size:27
Alignment explanation
Indices: 65262863--65263018 Score: 154
Period size: 27 Copynumber: 5.8 Consensus size: 27
65262853 GGGTATTTTA
* **
65262863 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
65262890 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* ** * *
65262917 GTAATTCTATAAATTTAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
65262944 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* ***
65262971 GTAATTATGTAAATCGAGGGTACTTTG
1 GTAATTCTGTAAATCGAGGGTAAAATG
65262998 GTAATT-T-TACAATCGAGGGTA
1 GTAATTCTGTA-AATCGAGGGTA
65263019 TTACAATAAT
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
25 2 0.02
26 12 0.11
27 96 0.87
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:65263003 original size:54 final size:54
Alignment explanation
Indices: 65262835--65262992 Score: 181
Period size: 54 Copynumber: 2.9 Consensus size: 54
65262825 AGGGTATTTT
* * *** *
65262835 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAAC
* * * ** *
65262889 AGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTTAGGATAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAAC
* **
65262943 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTA
1 GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTA
65262993 CTTTGGTAAT
Statistics
Matches: 84, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.32
Consensus pattern (54 bp):
GGTAATTCTGTAAATCAAGGGTAAAATAGTAATTATGTAAATCGAGGGTAAAAC
Found at i:65264483 original size:40 final size:39
Alignment explanation
Indices: 65264439--65264646 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
65264429 GGAAATACAA
*
65264439 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
65264479 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
65264519 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
65264559 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
65264599 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
65264639 CCGGATAT
1 CCGGATAT
65264647 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:65264579 original size:80 final size:80
Alignment explanation
Indices: 65264439--65264645 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
65264429 GGAAATACAA
* * *
65264439 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
65264503 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
65264519 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
65264583 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
65264599 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
65264646 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:65268619 original size:61 final size:62
Alignment explanation
Indices: 65268544--65268714 Score: 278
Period size: 61 Copynumber: 2.8 Consensus size: 62
65268534 TCGTTTAACA
* *
65268544 ATTACTGGGTCGAAGCCTTTTCATAAATCATATCACTGGGCTGAAGCCTTATCATAAATCAT
1 ATTACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCAT
*
65268606 ATTACTGGG-CGAAGCCTTATCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCAT
1 ATTACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCAT
65268667 ATCT-CTGGGCCGAA-CCTTTTCATAAATCATATCACT-GGCCGAAGCCTT
1 AT-TACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTT
65268715 TACTGTAAAC
Statistics
Matches: 104, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
60 12 0.12
61 78 0.75
62 14 0.13
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (62 bp):
ATTACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCAT
Found at i:65268715 original size:30 final size:31
Alignment explanation
Indices: 65268547--65268714 Score: 261
Period size: 31 Copynumber: 5.5 Consensus size: 31
65268537 TTTAACAATT
* *
65268547 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
65268578 ACTGGGCTGAAGCCTTATCATAAATCATATT
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
65268609 ACTGGG-CGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
65268639 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
65268670 TCTGGGCCGAA-CCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
65268700 ACT-GGCCGAAGCCTT
1 ACTGGGCCGAAGCCTT
65268715 TACTGTAAAC
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
29 7 0.06
30 52 0.41
31 67 0.53
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:65269002 original size:25 final size:24
Alignment explanation
Indices: 65268921--65268991 Score: 99
Period size: 24 Copynumber: 2.9 Consensus size: 24
65268911 CTAGAGGCCT
*
65268921 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
65268945 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
65268969 AGCCCTTTTCGGTAAACTGGGGC
1 AGCCCTTTT-GATAAACTGGGGC
65268992 TTAACCCTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
23 7 0.16
24 24 0.56
25 12 0.28
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:65269870 original size:27 final size:27
Alignment explanation
Indices: 65269808--65269885 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
65269798 GGGCATATTC
65269808 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
65269835 GTCACTTTACCCTACAGGGG-ATTTACG
1 GTCATTTTACCATACAGGGGTA-TTACG
* *
65269862 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
65269886 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:65270068 original size:26 final size:27
Alignment explanation
Indices: 65269986--65270215 Score: 195
Period size: 27 Copynumber: 8.6 Consensus size: 27
65269976 AGAAGTCAAG
** * *
65269986 GGTATTTCT-GTAATTTTGTAAATTAGG
1 GGTATTT-TGGTAATTTTACAAACTAGT
* *
65270013 GGTATTTTGGTAATTTTACAAA-TTGA
1 GGTATTTTGGTAATTTTACAAACTAGT
* *
65270039 GGTATTTT-GTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGT
65270065 GGTATTTTGGTAATTTTACAAACTA-T
1 GGTATTTTGGTAATTTTACAAACTAGT
* *
65270091 GGGTATTTTGGTAATTTTACAAACCAGG
1 -GGTATTTTGGTAATTTTACAAACTAGT
* *
65270119 GGTATTTTAGCAATTTTACAAACTAG-
1 GGTATTTTGGTAATTTTACAAACTAGT
** * *
65270145 GGTATTTTGGTAATTTTATTGATCGAG-
1 GGTATTTTGGTAATTTTA-CAAACTAGT
** *
65270172 GGTATTTTGGTAATTTTGTAAACCAAG-
1 GGTATTTTGGTAATTTTACAAA-CTAGT
*
65270199 GGTATTTTAGTAATTTT
1 GGTATTTTGGTAATTTT
65270216 GTAAATCGAG
Statistics
Matches: 170, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
25 12 0.07
26 39 0.23
27 119 0.70
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGT
Found at i:65270124 original size:54 final size:54
Alignment explanation
Indices: 65270010--65270215 Score: 242
Period size: 54 Copynumber: 3.9 Consensus size: 54
65270000 TTTGTAAATT
*
65270010 AGGGGTATTTTGGTAATTTTACAAA-T-TGAGGTATTTT-GTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTATG-GGTATTTTGGTAATTTTACAAACC
*
65270062 AGTGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTTACAAACC
* * *** *
65270116 AGGGGTATTTTAGCAATTTTACAAACTA-GGGTATTTTGGTAATTTTATTGATC
1 AGGGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTTACAAACC
** * * *
65270169 -GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AG-GGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTT
65270216 GTAAATCGAG
Statistics
Matches: 134, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
52 25 0.19
53 51 0.38
54 58 0.43
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTTACAAACC
Found at i:65270160 original size:80 final size:79
Alignment explanation
Indices: 65269984--65270215 Score: 263
Period size: 80 Copynumber: 2.9 Consensus size: 79
65269974 TTAGAAGTCA
* * ** *
65269984 AGGGTATTTCT-GTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGGTATTTT
1 AGGGTATTT-TGGTAATTTTATAAACTA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
*
65270047 -GTAATTTCACAAACC
64 AGTAATTTTACAAACC
*
65270062 AGTGGTATTTTGGTAATTTTACAAACTATGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AG-GGTATTTTGGTAATTTTATAAACTA-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
* *
65270127 AGCAATTTTACAAACT
64 AGTAATTTTACAAACC
* * * ** *
65270143 AGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTA-TAAACTAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
65270208 GTAATTTT
65 GTAATTTT
65270216 GTAAATCGAG
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
78 3 0.02
79 43 0.33
80 68 0.52
81 17 0.13
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (79 bp):
AGGGTATTTTGGTAATTTTATAAACTAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAG
TAATTTTACAAACC
Found at i:65270178 original size:27 final size:27
Alignment explanation
Indices: 65269984--65270366 Score: 170
Period size: 27 Copynumber: 14.3 Consensus size: 27
65269974 TTAGAAGTCA
*
65269984 AGGGTATTTCT-GTAATTTTGTAAAT-T
1 AGGGTATTT-TGGTAATTTTGTAAATCG
** *
65270010 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTGTAAATCG
*** *
65270038 A-GGTATTTT-GTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTGTAAATCG
** *
65270062 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTGTAAATCG
** *
65270089 ATGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTTGGTAATTTTGTAAATCG
* * ** *
65270116 AGGGGTATTTTAGCAATTTTACAAA-CT
1 A-GGGTATTTTGGTAATTTTGTAAATCG
* **
65270143 AGGGTATTTTGGTAATTTTATTGATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
* *
65270170 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTGTAAATCG
*
65270197 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
***** * *
65270224 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTTGGTAATTTTGTAAATCG
*** * * * **
65270251 AGGGTAAAATAGTAATTCTATAAATTA
1 AGGGTATTTTGGTAATTTTGTAAATCG
* **** *
65270278 AGGATAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
**** *
65270305 AGGGTAAAACGGTAATTATGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
* ** *
65270332 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
65270359 AGGGTATT
1 AGGGTATT
65270367 ACAATAATTG
Statistics
Matches: 296, Mismatches: 53, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
24 1 0.00
25 12 0.04
26 36 0.12
27 245 0.83
28 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTGTAAATCG
Found at i:65270224 original size:54 final size:53
Alignment explanation
Indices: 65269982--65270229 Score: 218
Period size: 54 Copynumber: 4.6 Consensus size: 53
65269972 TTTTAGAAGT
* * *
65269982 CAAGGGTATTTCTGTAATTTTGTAAAT-TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTT-TGTAATTTTATAAATCCA-GGGTATTTTGGTAATTTTACAAAC
** * *
65270036 TGA-GGTATTTTGTAATTTCACAAA-CCAGTGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGTAATTTTATAAATCCAG-GGTATTTTGGTAATTTTACAAAC
* * * * *
65270088 TATGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTT-GTAATTTTATAAATCCA-GGGTATTTTGGTAATTTTACAAAC
* ** * **
65270141 CTAGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTT-GTAATTTTATAAATCCAGGGTATTTTGGTAATTTTACAAAC
* *
65270195 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTT-GTAATTTTATAAATCCAGGGTA
65270230 AAACAGTAAT
Statistics
Matches: 159, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
51 1 0.01
52 35 0.22
53 54 0.34
54 68 0.43
55 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (53 bp):
CAAGGGTATTTTGTAATTTTATAAATCCAGGGTATTTTGGTAATTTTACAAAC
Found at i:65270375 original size:81 final size:81
Alignment explanation
Indices: 65270166--65270375 Score: 213
Period size: 81 Copynumber: 2.6 Consensus size: 81
65270156 AATTTTATTG
* * * ** *
65270166 ATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCAAGGGTATTACAGTAATTCTGTAAATCGAGGGTAA
*
65270231 AACAGTAATTCTGTAA
66 AACAGTAATTATGTAA
* ** * * * * ** *
65270247 ATCAAGGGTAAAATAGTAATTCTATAAATTAAGGATAAAACGGTAATTCTGTAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAATCAAGGGTATTACAGTAATTCTGTAAATCGAGGGTAA
*
65270312 AACGGTAATTATGTAA
66 AACAGTAATTATGTAA
* * * * *
65270328 ATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTACAATAATT
1 ATCGAGGGTAATTTGGTAATTTTATAAATCAAGGGTATTACAGTAATT
65270376 GGTAAACTAA
Statistics
Matches: 96, Mismatches: 33, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
81 96 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.33
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTATAAATCAAGGGTATTACAGTAATTCTGTAAATCGAGGGTAA
AACAGTAATTATGTAA
Found at i:65272704 original size:62 final size:62
Alignment explanation
Indices: 65272638--65272808 Score: 247
Period size: 62 Copynumber: 2.8 Consensus size: 62
65272628 TTTAACGGTT
65272638 ACTGGGCTGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
* *
65272700 ACTGGG-TCGAAGCCTTATCATAAATCATATCTC-AGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCT-GAAGCCTTTTCATAAATCATATCACTA-GGCCGAAGCCTTATCATAAATCATATC
* * * * *
65272762 TCTGGGCCGAAACCTTTTCATAATTCATATCACTAGGCCGAATCCTT
1 ACTGGGCTGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTT
65272809 TATTGTAAAC
Statistics
Matches: 96, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
61 2 0.02
62 93 0.97
63 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (62 bp):
ACTGGGCTGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
Found at i:65272809 original size:31 final size:31
Alignment explanation
Indices: 65272646--65272808 Score: 220
Period size: 31 Copynumber: 5.3 Consensus size: 31
65272636 TTACTGGGCT
*
65272646 GAAGCCTTTTCATAAATCATATCACTAGGCC
1 GAAGCCTTATCATAAATCATATCACTAGGCC
* *
65272677 GAAGCCTTATCATAAATCATATCACTGGGTC
1 GAAGCCTTATCATAAATCATATCACTAGGCC
*
65272708 GAAGCCTTATCATAAATCATATCTC-AGGGCC
1 GAAGCCTTATCATAAATCATATCACTA-GGCC
* *
65272739 GAAGCCTTATCATAAATCATATCTCTGGGCC
1 GAAGCCTTATCATAAATCATATCACTAGGCC
* * *
65272770 GAAACCTTTTCATAATTCATATCACTAGGCC
1 GAAGCCTTATCATAAATCATATCACTAGGCC
*
65272801 GAATCCTT
1 GAAGCCTT
65272809 TATTGTAAAC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
31 117 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (31 bp):
GAAGCCTTATCATAAATCATATCACTAGGCC
Found at i:65273083 original size:25 final size:24
Alignment explanation
Indices: 65273014--65273095 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
65273004 CTGGAGGCCT
* *
65273014 AGCCTCTTTTAAT-AACTGGGGAAA
1 AGCC-CTTTTGATAAACTGGGGCAA
65273038 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* *
65273062 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
65273087 AGCCCTTTT
1 AGCCCTTTT
65273096 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 7 0.13
24 23 0.44
25 22 0.42
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:65273991 original size:27 final size:27
Alignment explanation
Indices: 65273903--65273985 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
65273893 GGGCATATTC
* *
65273903 GTCATTTTACCATACA-GGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
65273929 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
* *
65273956 GTCACTTTATCCTGCAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
65273983 GTC
1 GTC
65273986 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 14 0.27
27 36 0.71
28 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:65274150 original size:27 final size:27
Alignment explanation
Indices: 65274110--65274342 Score: 229
Period size: 27 Copynumber: 8.7 Consensus size: 27
65274100 AGAAAGTCAA
** *
65274110 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAACCAG
** *
65274137 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
65274164 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
65274191 TGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
65274218 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
65274245 GGGTATTTTAGCAATTTTACAGACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
65274271 GGGTATTTTGGTAATTTTACTGATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
65274297 AGGGTATTTTGGTAATTTTGTAGACCAA
1 -GGGTATTTTGGTAATTTTACAAACCAG
*
65274325 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
65274343 GTAAATCGAG
Statistics
Matches: 172, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.13
27 150 0.87
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:65274329 original size:80 final size:81
Alignment explanation
Indices: 65274135--65274342 Score: 258
Period size: 80 Copynumber: 2.6 Consensus size: 81
65274125 TTTGTAAATC
** ** *
65274135 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGATATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGATATTTT
*
65274200 GGTAATTTTACAAACT
66 GGTAATTTTACAAACG
* * * *
65274216 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTACAGACCAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGATATTTT
* *
65274280 GGTAATTTTACTGATCG
66 GGTAATTTTAC-AAACG
** *
65274297 A-GGGTATTTTGGTAATTTTGTAGACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
65274343 GTAAATCGAG
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
80 58 0.53
81 51 0.47
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACCAGTGATATTTT
GGTAATTTTACAAACG
Found at i:65274343 original size:27 final size:27
Alignment explanation
Indices: 65274024--65274356 Score: 217
Period size: 27 Copynumber: 12.3 Consensus size: 27
65274014 TTTCACCCTA
* * * *
65274024 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*** *
65274051 CAAGGGTATTCCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
65274078 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* *
65274107 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
65274134 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
65274161 TAAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
65274188 C-AGTGATATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
65274215 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
65274242 CAGGGGTATTTTAGCAATTTTACAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
65274269 C-AGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* * *
65274295 CGAGGGTATTTTGGTAATTTTGTAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
65274322 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
65274349 CGAGGGTA
1 CAAGGGTA
65274357 AAACAGTAAT
Statistics
Matches: 247, Mismatches: 50, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.10
27 193 0.78
28 15 0.06
29 15 0.06
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:65274364 original size:27 final size:27
Alignment explanation
Indices: 65274334--65274464 Score: 163
Period size: 27 Copynumber: 4.9 Consensus size: 27
65274324 AGGGTATTTT
*
65274334 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
65274361 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65274388 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
65274415 AATAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
65274442 GGTAATTATGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
65274465 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:65274366 original size:54 final size:54
Alignment explanation
Indices: 65274308--65274464 Score: 143
Period size: 54 Copynumber: 2.9 Consensus size: 54
65274298 GGGTATTTTG
* * *** * *
65274308 GTAATTTTGTAGACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* * *
65274362 GTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* *** ** * * *
65274416 ATAATTCTGTAAATTGAGGGTAAAACGGTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
65274465 CTTTGGTAAT
Statistics
Matches: 83, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:65274474 original size:81 final size:81
Alignment explanation
Indices: 65274336--65274502 Score: 181
Period size: 81 Copynumber: 2.1 Consensus size: 81
65274326 GGTATTTTAG
* * *
65274336 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTACAA
*
65274401 ATTGAGGGTAAAACAA
66 ATCGAGGGTAAAACAA
* * * ** *** * *
65274417 TAATTCTGTAAATTGAGGGTAAAACGGTAATTATGTAAATCGGGGGTACTTTGGTAATTTTACAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTACAA
* **
65274482 GTCGAGGGTATTACAA
66 ATCGAGGGTAAAACAA
65274498 TAATT
1 TAATT
65274503 GGTAAACTAA
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTACAA
ATCGAGGGTAAAACAA
Found at i:65289072 original size:93 final size:93
Alignment explanation
Indices: 65288963--65289133 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
65288953 ACCCCTAAGT
* *
65288963 GAACTCGAACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65289028 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
65289056 GAACTC-AGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGA-ACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65289120 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
65289134 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:65289130 original size:46 final size:46
Alignment explanation
Indices: 65288958--65289130 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
65288948 AACCCACCCC
* * * * *
65288958 TAAGTGAACTCGAACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
65289004 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
65289052 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
65289097 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65289131 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:65289585 original size:30 final size:30
Alignment explanation
Indices: 65289551--65289610 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65289541 ATTTAATACG
65289551 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
65289581 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65289611 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Done.