Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 218 of 328
Found at i:65292796 original size:2 final size:2
Alignment explanation
Indices: 65292789--65292814 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
65292779 GCTCTTGCAC
65292789 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
65292815 TTGCACATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65293581 original size:40 final size:40
Alignment explanation
Indices: 65293521--65293699 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
65293511 TACTCGAATG
*
65293521 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
65293561 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTGGCT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
65293601 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * **
65293641 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
65293680 ATATCC-GGCTAA-ACCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65293700 ATGCTTGATT
Statistics
Matches: 120, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
37 8 0.07
38 6 0.05
39 16 0.13
40 81 0.68
41 9 0.08
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:65293654 original size:80 final size:79
Alignment explanation
Indices: 65293521--65293699 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 79
65293511 TACTCGAATG
* * *
65293521 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGC-
* *
65293586 TTTGTGCTAGTGGCT
65 CTTGTGCGAGTGGCT
* * *
65293601 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGC
*
65293665 CTTGTGCGAGTGGTT
65 CTTGTGCGAGTGGCT
*
65293680 ATATCC-GGCTAA-ACCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65293700 ATGCTTGATT
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
77 7 0.08
78 6 0.07
79 18 0.20
80 50 0.57
81 7 0.08
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGCC
TTGTGCGAGTGGCT
Found at i:65300825 original size:2 final size:2
Alignment explanation
Indices: 65300818--65300843 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
65300808 GCTCTTGCAC
65300818 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
65300844 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65301646 original size:40 final size:40
Alignment explanation
Indices: 65301552--65301695 Score: 193
Period size: 39 Copynumber: 3.6 Consensus size: 40
65301542 TACTCGAATG
*
65301552 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
65301593 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
65301633 ATATCCGGGCTAAGTCCCGAAGGCA-TTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
65301672 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
65301696 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 35 0.38
40 28 0.30
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:65305892 original size:40 final size:40
Alignment explanation
Indices: 65305837--65306060 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
65305827 TATTCGGATG
*
65305837 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
65305877 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
65305920 ATACCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
65305960 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
65306000 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
65306040 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
65306061 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 112 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:65305980 original size:83 final size:80
Alignment explanation
Indices: 65305841--65306060 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
65305831 CGGATGATAT
* * **
65305841 CCGGGCTAAGTCCCGAAGGCATTTATGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
65305906 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* *
65305924 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
65305989 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
65306004 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
65306061 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 62 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:65311169 original size:40 final size:40
Alignment explanation
Indices: 65311092--65311302 Score: 277
Period size: 40 Copynumber: 5.3 Consensus size: 40
65311082 AAACCAAGTA
* * * *
65311092 CCTTCGGGATTTAG-CCAGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
65311131 CCTTCGGGACTTAGCCC-GATTATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
65311171 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
65311211 CCTTCGGAACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
65311251 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
65311291 CCTTCGGGACTT
1 CCTTCGGGACTT
65311303 TGCCTAATTA
Statistics
Matches: 154, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 17 0.11
40 135 0.88
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:65314578 original size:46 final size:46
Alignment explanation
Indices: 65314511--65314679 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
65314501 AACCCGCCCC
*
65314511 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCTTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCTTTCGCATCCA
* * *
65314557 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-CT--TTCGCATCCA
* * * *
65314605 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCTTTCGCATCCA
*
65314650 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCAGACTCAACTCAACGAGTT
65314680 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 55 0.55
47 27 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCTTTCGCATCCA
Found at i:65314623 original size:93 final size:93
Alignment explanation
Indices: 65314516--65314686 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
65314506 GCCCCTAAGT
* *
65314516 GAACTCAGACTCAACTCAACGAGCTCGGGCTTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65314581 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
65314609 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65314674 CGAGTTTGGATGC
66 CGAGTTCGGATGC
65314687 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:65315138 original size:30 final size:30
Alignment explanation
Indices: 65315104--65315163 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65315094 ATTTAATACG
65315104 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
65315134 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65315164 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65318932 original size:70 final size:70
Alignment explanation
Indices: 65318850--65318991 Score: 257
Period size: 70 Copynumber: 2.0 Consensus size: 70
65318840 TGTAAATGAG
*
65318850 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGTAGGACCTCATTACACATGT
1 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
65318915 CAATC
66 CAATC
*
65318920 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGGCCTCATTACACATGT
1 ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
*
65318985 TAATC
66 CAATC
65318990 AT
1 AT
65318992 GGTTTATCCA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (70 bp):
ATCAACAGATTACCTGTCTAGGCTAAATCCTTTCTTCAACACATGCAGGACCTCATTACACATGT
CAATC
Found at i:65324136 original size:8 final size:8
Alignment explanation
Indices: 65324123--65324165 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
65324113 GTGAATCGGC
*
65324123 AAAAGCTG
1 AAAAGCCG
65324131 AAAAGCCG
1 AAAAGCCG
65324139 AAAAGCCG
1 AAAAGCCG
65324147 AAAAGCCG
1 AAAAGCCG
*
65324155 AAAAGCTG
1 AAAAGCCG
65324163 AAA
1 AAA
65324166 CTTCGACATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.53, C:0.19, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:65324144 original size:16 final size:16
Alignment explanation
Indices: 65324123--65324165 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
65324113 GTGAATCGGC
65324123 AAAAGCTGAAAAGCCG
1 AAAAGCTGAAAAGCCG
*
65324139 AAAAGCCGAAAAGCCG
1 AAAAGCTGAAAAGCCG
65324155 AAAAGCTGAAA
1 AAAAGCTGAAA
65324166 CTTCGACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.53, C:0.19, G:0.23, T:0.05
Consensus pattern (16 bp):
AAAAGCTGAAAAGCCG
Found at i:65325504 original size:28 final size:29
Alignment explanation
Indices: 65325459--65325528 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 29
65325449 TTTAAAACCC
*
65325459 TAGGGGT-ATATCGGTAATTATGCTC-TT
1 TAGGGGTAATTTCGGTAATTATGCTCTTT
*
65325486 TAGGGGTAATTTCGGTAATTTTGCTCTTT
1 TAGGGGTAATTTCGGTAATTATGCTCTTT
65325515 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
65325529 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 7 0.18
28 16 0.41
29 16 0.41
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (29 bp):
TAGGGGTAATTTCGGTAATTATGCTCTTT
Found at i:65327071 original size:31 final size:31
Alignment explanation
Indices: 65327027--65327128 Score: 114
Period size: 31 Copynumber: 3.1 Consensus size: 31
65327017 CCTTTTCATA
*
65327027 TTTCATATCTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
*
65327064 GTTTCATATTTCATAATATTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
65327096 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
65327127 TT
1 TT
65327129 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
31 31 0.52
32 1 0.02
33 1 0.02
37 1 0.02
38 26 0.43
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:65327111 original size:38 final size:38
Alignment explanation
Indices: 65327004--65327111 Score: 171
Period size: 38 Copynumber: 2.8 Consensus size: 38
65326994 TCAATCATGC
* *
65327004 ACTGGGCCGTAGCCCTTTTCATATTTCATATCTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
65327043 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
*
65327081 ATTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
65327112 ACTGGGCCGA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
38 53 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:65327366 original size:24 final size:24
Alignment explanation
Indices: 65327320--65327438 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
65327310 GCTTTATCAT
*
65327320 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
65327345 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
65327369 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
65327392 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
65327416 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
65327439 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:65327399 original size:47 final size:48
Alignment explanation
Indices: 65327320--65327438 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
65327310 GCTTTATCAT
*
65327320 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
65327369 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
65327416 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
65327439 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:65327514 original size:20 final size:20
Alignment explanation
Indices: 65327489--65327548 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
65327479 TATGATTACC
65327489 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
65327509 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
65327529 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
65327549 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:65327623 original size:25 final size:25
Alignment explanation
Indices: 65327591--65327638 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65327581 ATACATAAAC
* * *
65327591 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
65327616 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
65327639 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:65329141 original size:27 final size:27
Alignment explanation
Indices: 65328880--65329127 Score: 320
Period size: 27 Copynumber: 9.2 Consensus size: 27
65328870 GGGTATTTTA
* *
65328880 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
65328907 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
65328934 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
65328961 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
65328988 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
65329015 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
65329042 GTAATTATGTAAATTG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
65329068 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
65329095 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
65329122 GTAATT
1 GTAATT
65329128 TTACAAATTG
Statistics
Matches: 197, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 24 0.12
27 173 0.88
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:65333626 original size:28 final size:28
Alignment explanation
Indices: 65333581--65333649 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
65333571 TTTAAAACCC
* *
65333581 TAGGGGT-ATATCGGTAATTATGCTCTT
1 TAGGGGTAATTTCGGTAATTATACTCTT
*
65333608 TAGGGGTAATTTCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTATACTCTT
65333636 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
65333650 TGATCTACGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.42
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTATACTCTT
Found at i:65338668 original size:20 final size:20
Alignment explanation
Indices: 65338643--65338701 Score: 118
Period size: 20 Copynumber: 3.0 Consensus size: 20
65338633 GACCATACGA
65338643 CCAAGTCGCACGGGCGTGTC
1 CCAAGTCGCACGGGCGTGTC
65338663 CCAAGTCGCACGGGCGTGTC
1 CCAAGTCGCACGGGCGTGTC
65338683 CCAAGTCGCACGGGCGTGT
1 CCAAGTCGCACGGGCGTGT
65338702 GACCCCTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.15, C:0.34, G:0.36, T:0.15
Consensus pattern (20 bp):
CCAAGTCGCACGGGCGTGTC
Found at i:65339904 original size:15 final size:15
Alignment explanation
Indices: 65339884--65339914 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65339874 TGTAATGCCC
*
65339884 CAAAAATCCCGAAAT
1 CAAAAATCCCAAAAT
65339899 CAAAAATCCCAAAAT
1 CAAAAATCCCAAAAT
65339914 C
1 C
65339915 TTGAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.29, G:0.03, T:0.13
Consensus pattern (15 bp):
CAAAAATCCCAAAAT
Found at i:65342038 original size:24 final size:24
Alignment explanation
Indices: 65341982--65342070 Score: 110
Period size: 24 Copynumber: 3.7 Consensus size: 24
65341972 AAGGTTCTGC
65341982 GGCACTATGTGTGC-A-AAAACTAAGT
1 GGCACTATGTGTGCGAGAAAAC--A-T
**
65342007 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACAT
*
65342031 GGCACTATGTGTGCGAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACAT
65342055 GGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
65342071 ATAAGTAAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
24 38 0.67
25 15 0.26
26 1 0.02
27 3 0.05
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACAT
Found at i:65342085 original size:49 final size:47
Alignment explanation
Indices: 65341982--65342092 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 47
65341972 AAGGTTCTGC
* *
65341982 GGCACTATGTGTGCAAAAACTAAGTGGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCAAAAAC--AGTGGCACTATGTGTGCGAGATAACAA
*
65342031 GGCACTATGTGTGCGAGAAAAC-GTGGCACTATGTGTGCGA-ATAAGTAA
1 GGCACTATGTGTGC-A-AAAACAGTGGCACTATGTGTGCGAGATAA-CAA
65342079 GAGCACTATGTGTG
1 G-GCACTATGTGTG
65342093 TGGACTTTCA
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
47 3 0.05
48 20 0.36
49 26 0.47
50 1 0.02
51 5 0.09
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (47 bp):
GGCACTATGTGTGCAAAAACAGTGGCACTATGTGTGCGAGATAACAA
Found at i:65348731 original size:15 final size:17
Alignment explanation
Indices: 65348698--65348734 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
65348688 GAAAACATCT
*
65348698 CAAAAGCATAAAGATAA
1 CAAAAGCATAAAGAAAA
65348715 CAAAA-CAT-AAGAAAA
1 CAAAAGCATAAAGAAAA
65348730 CAAAA
1 CAAAA
65348735 AACTCCTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 11 0.58
16 3 0.16
17 5 0.26
ACGTcount: A:0.70, C:0.14, G:0.08, T:0.08
Consensus pattern (17 bp):
CAAAAGCATAAAGAAAA
Found at i:65357109 original size:20 final size:20
Alignment explanation
Indices: 65357072--65357109 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
65357062 TCCCATGTGG
*
65357072 GTCCATTTTCTCTATTTTCA
1 GTCCATTTTCACTATTTTCA
65357092 GTCCATTTCTCACT-TTTT
1 GTCCATTT-TCACTATTTT
65357110 TTACTCTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.13, C:0.26, G:0.05, T:0.55
Consensus pattern (20 bp):
GTCCATTTTCACTATTTTCA
Found at i:65364123 original size:30 final size:29
Alignment explanation
Indices: 65364089--65364152 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
65364079 ATGAATCGGA
65364089 AGCTTTGGCACTAAGAGTGCGATTTAAACT
1 AGCTTTGGCACTAAGAGTGCGATTT-AACT
*
65364119 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGAGTGCGATTTAACT
65364148 AGCTT
1 AGCTT
65364153 CGACTACTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAGAGTGCGATTTAACT
Found at i:65372264 original size:40 final size:39
Alignment explanation
Indices: 65372083--65372264 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
65372073 GACTCGCTCA
** * **
65372083 AATGCCTTCGGGACGAAGCCCGGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
65372122 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
65372162 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
65372200 GAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCAC
*
65372241 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
65372265 CATCATTCGA
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
38 24 0.21
39 21 0.18
40 65 0.56
41 7 0.06
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
Found at i:65380212 original size:78 final size:80
Alignment explanation
Indices: 65380130--65380276 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 80
65380120 ATAGCGACTT
* * * *
65380130 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CTTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
65380192 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
65380208 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
65380273 CGGA
66 CGGA
65380277 CATCATTCGA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.51
79 15 0.25
80 11 0.19
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:65380276 original size:40 final size:39
Alignment explanation
Indices: 65380095--65380276 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
65380085 GACTCGCTCA
** * **
65380095 AATGCCTTCGGGACGAAGCCCGGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
65380134 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
65380174 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
65380212 GAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCAC
*
65380253 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
65380277 CATCATTCGA
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
38 24 0.21
39 21 0.18
40 65 0.56
41 7 0.06
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
Found at i:65385253 original size:39 final size:39
Alignment explanation
Indices: 65385095--65385251 Score: 235
Period size: 39 Copynumber: 4.0 Consensus size: 39
65385085 AACCCACACA
* *
65385095 AATT-CCTTCGGGACTTAACCCGGGTATCACAACTCGCAC
1 AATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCAC
* *
65385134 AATTGCCTTCGGGCTTAGCCTGGATATCATAACTCGCAC
1 AATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCAC
*
65385173 AATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCAC
1 AATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCAC
* *
65385212 ATTTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCAC
1 AATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCAC
65385251 A
1 A
65385252 TTCATACACA
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
39 101 0.93
40 8 0.07
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (39 bp):
AATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCAC
Found at i:65387028 original size:21 final size:21
Alignment explanation
Indices: 65386982--65387030 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
65386972 GAGATAGTTT
* *
65386982 GAAAGCAGCTTTTGATCATCA
1 GAAATCAGCTTCTGATCATCA
65387003 GAAATCAGCTTCTGATCATCA
1 GAAATCAGCTTCTGATCATCA
65387024 GAAATCA
1 GAAATCA
65387031 TATGTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (21 bp):
GAAATCAGCTTCTGATCATCA
Found at i:65388681 original size:30 final size:30
Alignment explanation
Indices: 65388647--65388703 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
65388637 ATGAATCGGA
*
65388647 AGCTTTGGCACTAAGTCTGCGATTTAAACT
1 AGCTTTGGCACTAAGTCTGCAATTTAAACT
*
65388677 AGCTTTGGCACTAAGTGTGCAATTTAA
1 AGCTTTGGCACTAAGTCTGCAATTTAA
65388704 TTAGCTTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTCTGCAATTTAAACT
Found at i:65391515 original size:30 final size:30
Alignment explanation
Indices: 65391481--65391542 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
65391471 GTAATTAAAG
65391481 TTAAAATAACTTAAACAAAATGCATTCATC
1 TTAAAATAACTTAAACAAAATGCATTCATC
65391511 TTAAAATAACTTAAACAAAATGCATTCATC
1 TTAAAATAACTTAAACAAAATGCATTCATC
65391541 TT
1 TT
65391543 CTTCATTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.32
Consensus pattern (30 bp):
TTAAAATAACTTAAACAAAATGCATTCATC
Found at i:65394841 original size:18 final size:18
Alignment explanation
Indices: 65394820--65394876 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
65394810 TAATAGTTAG
*
65394820 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* *
65394838 TTATTCAATAATAATCAA
1 TTATTCAGTAACAATCAA
*
65394856 TTATTCAGTATCAATCAA
1 TTATTCAGTAACAATCAA
65394874 TTA
1 TTA
65394877 AATTATTCAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:65395087 original size:53 final size:53
Alignment explanation
Indices: 65395007--65395127 Score: 161
Period size: 53 Copynumber: 2.3 Consensus size: 53
65394997 CCGAAGCCGG
* * * *
65395007 AACAGTAGCAGTAATAATACGGTACACAGAGTACCTCATCGGAACAAATCCAA
1 AACAGTAACACTAACAATACGGTACACAGAATACCTCATCGGAACAAATCCAA
* * * *
65395060 AACTGTAACACTAACAATACGGTACACAGAATACCTCATCGGAATAAATTCGA
1 AACAGTAACACTAACAATACGGTACACAGAATACCTCATCGGAACAAATCCAA
*
65395113 AACAGTAACAGTAAC
1 AACAGTAACACTAAC
65395128 GGTAACAGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 58 1.00
ACGTcount: A:0.45, C:0.22, G:0.15, T:0.18
Consensus pattern (53 bp):
AACAGTAACACTAACAATACGGTACACAGAATACCTCATCGGAACAAATCCAA
Found at i:65395338 original size:16 final size:16
Alignment explanation
Indices: 65395309--65395342 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
65395299 TAATTCACTT
65395309 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
65395325 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
65395341 TT
1 TT
65395343 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:65396236 original size:17 final size:18
Alignment explanation
Indices: 65396200--65396239 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
65396190 CAAACCTTCA
65396200 CTTTTCCCTTTTCATCTTT
1 CTTTTCCCTTTT-ATCTTT
*
65396219 CTTTTCTCTTTT-TCTTT
1 CTTTTCCCTTTTATCTTT
65396236 CTTT
1 CTTT
65396240 CTTTCCTCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
19 11 0.55
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.70
Consensus pattern (18 bp):
CTTTTCCCTTTTATCTTT
Found at i:65396309 original size:2 final size:2
Alignment explanation
Indices: 65396302--65396336 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
65396292 TTTACTTTGT
65396302 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
65396337 CATCTATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:65398264 original size:399 final size:399
Alignment explanation
Indices: 65397525--65398724 Score: 1963
Period size: 399 Copynumber: 3.0 Consensus size: 399
65397515 TTCGGGGTAG
* * ** * *
65397525 TGGCAAGCAGCATATGTGTGTGTTTAGAAGGTTTCAGGTTCGAGATGTATAGTAGGTGAAATTTC
1 TGGCAAGCAGCGTATGTGTGTGTTTAAAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTC
65397590 CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
66 CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
* *
65397655 TAGTGTAAAGGAAAGATTGGTACAGTGGCCAGCAGTAGGATGTGGAGAGTAGGGACAGGAAGAGG
131 TAGTGTAAAGGAAAGATTGGTGCAGTGGCCAGCAGTAGGATGTGGAGAGTAGGGACAGGAGGAGG
*
65397720 TCTGGAGTTCGAGCTACTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTAG
196 TCTGGAGTTCGAGCTACTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGG
* *
65397785 AGTCTGATCAGACTCTCTTAGCAGTGTGCTGGAATGGTGCAAGGGGTGGATAAGGCTGCTAAACA
261 AGTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACA
*
65397850 GTGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAATGAGCAAAATAAGGA
326 GTGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGA
*
65397915 CTTTAAATA
391 CTTTGAATA
*
65397924 TGGCAAGCAGTGTATGTGTGTGTTTAAAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTC
1 TGGCAAGCAGCGTATGTGTGTGTTTAAAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTC
*
65397989 CTTTTTATTTCGTAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
66 CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
* * * *
65398054 CAGTGTAAAGGAAAGATTGGTGTAGTGGCCAGCAGTAGGATGTAGAGTGTAGGGACAGGAGGAGG
131 TAGTGTAAAGGAAAGATTGGTGCAGTGGCCAGCAGTAGGATGTGGAGAGTAGGGACAGGAGGAGG
*
65398119 TCTGGAGGTCGAGCTACTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGG
196 TCTGGAGTTCGAGCTACTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGG
**
65398184 AGTCTGATCAGACTCTCTTAGCAGCGTATTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACA
261 AGTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACA
* *
65398249 GTTGGAAGAAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGA
326 GTGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGA
65398314 CTTTGAATA
391 CTTTGAATA
* * * *
65398323 TGGCAAGTAGCGTATATGTGTGTTTAGAAA-GTCGCAGGTTCGAGATGTATAGCAGGCAAAATTT
1 TGGCAAGCAGCGTATGTGTGTGTTTA-AAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTT
* **
65398387 CCTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATATATTAAGAGTAATTGTGACTTTATT
65 CCTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATT
* ** *
65398452 ATAGTGTAAATGAAAGATTGGTGCAGTGGCCAGCAACAGGATGTGGAGCA-CAGGGACAGGAGGA
130 ATAGTGTAAAGGAAAGATTGGTGCAGTGGCCAGCAGTAGGATGTGGAG-AGTAGGGACAGGAGGA
* * *
65398516 GGTCTGAAGTTTGAGCTGCTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTT
194 GGTCTGGAGTTCGAGCTACTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTT
* * *
65398581 GGAGTCTGATCAGACTCTCTTAGTAGCATGCTGGAACGGTGCAAGGGGTAGATAAGGCTGCTAAA
259 GGAGTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAA
* * *
65398646 CAGTGGGAAGGAGTTTGAATGAAATACAAACTGTGCTAAGGGTTAAAATTACGGAGCAAAATAAG
324 CAGTGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAG
*
65398711 AACTTTGAATA
389 GACTTTGAATA
65398722 TGG
1 TGG
65398725 GAAGGACGGT
Statistics
Matches: 743, Mismatches: 56, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
399 740 1.00
400 3 0.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (399 bp):
TGGCAAGCAGCGTATGTGTGTGTTTAAAAGGTCACAGGTTCGAGATGTATAGCAGGCGAAATTTC
CTTTTTATTTCGCAAGTAACCGAGGCTTCAGCAGGAATAGATTAAGAGTAATTGTGACCCTATTA
TAGTGTAAAGGAAAGATTGGTGCAGTGGCCAGCAGTAGGATGTGGAGAGTAGGGACAGGAGGAGG
TCTGGAGTTCGAGCTACTGTGTGCGCGAAGGACCAATTTTGCTGCTCGCGTGGGGAAGGAGTTGG
AGTCTGATCAGACTCTCTTAGCAGCGTGCTGGAACGGTGCAAGGGGTGGATAAGGCTGCTAAACA
GTGGGAAGGAGTTTGAATGAAATTCAAACTGTGCTAAGGGCTAAAATTAAGGAGCAAAATAAGGA
CTTTGAATA
Found at i:65399400 original size:22 final size:22
Alignment explanation
Indices: 65399372--65399417 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
65399362 CAAGGGGACG
* *
65399372 TACAGCAAAGGGCTTTGGAGGC
1 TACAGCAAAAGCCTTTGGAGGC
65399394 TACAGCAAAAGCCTTTGGAGGC
1 TACAGCAAAAGCCTTTGGAGGC
65399416 TA
1 TA
65399418 ACACGGTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (22 bp):
TACAGCAAAAGCCTTTGGAGGC
Found at i:65400088 original size:27 final size:27
Alignment explanation
Indices: 65400058--65400167 Score: 159
Period size: 27 Copynumber: 4.1 Consensus size: 27
65400048 ATGGAGGAAG
*
65400058 TGTTCTGGTGGCTATGCTACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
65400085 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
* * *
65400112 TATTTTGGTGGCTACGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
* *
65400139 TGTTCTAGTGGCTACGCCAC-AATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
65400165 TGT
1 TGT
65400168 ATCTAATGGC
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
26 9 0.12
27 67 0.88
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (27 bp):
TGTTCTGGTGGCTATGCCACAAATATC
Found at i:65403693 original size:2 final size:2
Alignment explanation
Indices: 65403686--65403734 Score: 73
Period size: 2 Copynumber: 24.5 Consensus size: 2
65403676 AGATAATCGA
*
65403686 AT AT AT AT AT GT AT -T CAT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
65403728 AT AT AT A
1 AT AT AT A
65403735 CAATCACGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 1 0.02
2 41 0.95
3 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:65406915 original size:29 final size:28
Alignment explanation
Indices: 65406880--65406983 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
65406870 ATAATCGATT
*
65406880 TCGCACACTTAGTGCCATGTGATTTAAGC
1 TCGCACACTTAGTGCCATAT-ATTTAAGC
* * *
65406909 TCGCACACATAGTGCCATACAATTTAAGT
1 TCGCACACTTAGTGCCATA-TATTTAAGC
65406938 TCGCACACTTAGTGCCATATATTTCAAGC
1 TCGCACACTTAGTGCCATATATTT-AAGC
*
65406967 TTGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
65406984 ATCTTGTCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATATATTTAAGC
Found at i:65407664 original size:2 final size:2
Alignment explanation
Indices: 65407657--65407684 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
65407647 ATGTGCAAAC
65407657 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65407685 GTACAAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65414954 original size:29 final size:28
Alignment explanation
Indices: 65414919--65415022 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 28
65414909 ATAATCGATT
*
65414919 TCGCACACTTAGTGCCATGTGATTTAAGC
1 TCGCACACTTAGTGCCATAT-ATTTAAGC
* * *
65414948 TCGCACACATAGTGCCATACAATTTAAGT
1 TCGCACACTTAGTGCCATA-TATTTAAGC
65414977 TCGCACACTTAGTGCCATATATTTCAAGC
1 TCGCACACTTAGTGCCATATATTT-AAGC
*
65415006 TTGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
65415023 ATCTTGTCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 4 0.06
29 61 0.94
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATATATTTAAGC
Found at i:65418726 original size:43 final size:42
Alignment explanation
Indices: 65418679--65418788 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 42
65418669 TCCCAGACGT
*
65418679 GGTCTTACATGTAATCACATATCGATG-CCATTGTCCCAAACAG
1 GGTCTTACACG-AATCACATATCGATGTCCA-TGTCCCAAACAG
* * * *
65418722 GGTCTTACACGAATCACATATACGATGTCGATGTCCTAGACAT
1 GGTCTTACACGAATCACATAT-CGATGTCCATGTCCCAAACAG
65418765 GGTCTTACACGCAATCACATATCG
1 GGTCTTACACG-AATCACATATCG
65418789 TAAATCCTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 10 0.17
43 37 0.63
44 12 0.20
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGAATCACATATCGATGTCCATGTCCCAAACAG
Found at i:65418808 original size:44 final size:43
Alignment explanation
Indices: 65418722--65418808 Score: 97
Period size: 44 Copynumber: 2.0 Consensus size: 43
65418712 TCCCAAACAG
** *
65418722 GGTCTTACACGAATCACATATACGATGTCGATGTCCTAGACAT
1 GGTCTTACACGAATCACATATACGAAATCGATGTCATAGACAT
*
65418765 GGTCTTACACGCAATCACATAT-CGTAAATCCTATGTCAT-GACAT
1 GGTCTTACACG-AATCACATATACG-AAAT-CGATGTCATAGACAT
65418809 ATGTATCCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
43 13 0.35
44 17 0.46
45 7 0.19
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
GGTCTTACACGAATCACATATACGAAATCGATGTCATAGACAT
Found at i:65420409 original size:2 final size:2
Alignment explanation
Indices: 65420402--65420427 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
65420392 TGCATAATTG
65420402 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
65420428 GTTCGGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65434095 original size:15 final size:16
Alignment explanation
Indices: 65434062--65434095 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
65434052 CTAACCCTAA
*
65434062 AAAGTGAAAAGAGAAG
1 AAAGTCAAAAGAGAAG
65434078 AAAGTCAAAAGA-AAG
1 AAAGTCAAAAGAGAAG
65434093 AAA
1 AAA
65434096 TGAGGGGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.03, G:0.24, T:0.06
Consensus pattern (16 bp):
AAAGTCAAAAGAGAAG
Found at i:65440002 original size:46 final size:46
Alignment explanation
Indices: 65439935--65440108 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
65439925 TGTAATCCGC
*
65439935 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
65439981 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
65440031 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
65440074 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
65440109 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:65440055 original size:93 final size:92
Alignment explanation
Indices: 65439943--65440112 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
65439933 GCCCATAAGT
* *
65439943 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65440008 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTC-GATGCCTAGTTACATCTCAC
*
65440036 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65440101 CGAGTTCGATGC
66 CGAGTTCGATGC
65440113 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 5 0.07
93 69 0.93
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGATGCCTAGTTACATCTCAC
Found at i:65441605 original size:40 final size:40
Alignment explanation
Indices: 65441549--65441804 Score: 358
Period size: 40 Copynumber: 6.4 Consensus size: 40
65441539 GATGATAACG
* * *
65441549 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
65441589 GGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
65441629 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
65441669 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
65441709 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
65441749 GGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
65441789 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
65441805 TACTTGCTTT
Statistics
Matches: 197, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.08
40 179 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:65443324 original size:40 final size:40
Alignment explanation
Indices: 65443280--65443389 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
65443270 TTCACAATTT
* *
65443280 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65443320 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65443360 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
65443390 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:65451378 original size:40 final size:40
Alignment explanation
Indices: 65451334--65451443 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
65451324 TTCACAATTT
* *
65451334 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65451374 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
65451414 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
65451444 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:65455054 original size:39 final size:39
Alignment explanation
Indices: 65455000--65455152 Score: 198
Period size: 39 Copynumber: 3.9 Consensus size: 39
65454990 CAGTGATGTT
* * * *
65455000 TATCCGGACTTAGGGTCCGTAGGCTATGTACTGGAATTA
1 TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
65455039 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
1 TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
65455078 TATCCGGACTTAAGGTTCGCAGGCTATGTGCCGGATTTA
1 TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
65455117 TAACCAGACTTAAGGTTCGCAGGCTATGTGCTGGAA
1 TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAA
65455153 ATATGTCCGT
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
TATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:65455179 original size:78 final size:78
Alignment explanation
Indices: 65455000--65455180 Score: 186
Period size: 78 Copynumber: 2.3 Consensus size: 78
65454990 CAGTGATGTT
** ** * * *
65455000 TATCCGGACTTAGGGTCCGTAGGCTATGTACTGGAATTATATCCAGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCACAGGCTATGTACCGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
*
65455065 TGTGCTAGAATTA
66 TGTGCTAGAAATA
* * * * * *
65455078 TATCCGGACTTAAGGTTCGCAGGCTATGTGCCGGATTTATAACCAGACTTAAGGTTCGCAGGCTA
1 TATCCGGACTTAAAGTCCACAGGCTATGTACCGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
*
65455143 TGTGCTGGAAATA
66 TGTGCTAGAAATA
*
65455156 TGTCCGTG-C-TAAAGTCCCACAGGCT
1 TATCCG-GACTTAAAGT-CCACAGGCT
65455181 TCGAGCTGGT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
77 5 0.06
78 80 0.93
79 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCACAGGCTATGTACCGGAATTATAACCAGACTTAAGGTCCGCAGGCTA
TGTGCTAGAAATA
Found at i:65463177 original size:39 final size:39
Alignment explanation
Indices: 65463123--65463285 Score: 227
Period size: 39 Copynumber: 4.2 Consensus size: 39
65463113 CAGTGATGTT
* **
65463123 TATCCGGACTTAGGGTCCGCAGGCTATGTATTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
65463162 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
65463201 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
65463240 TAACTGGACTTAAGGTTCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
65463279 TGTCCGG
1 TATCCGG
65463286 GCTAAAGTCC
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:65463312 original size:78 final size:78
Alignment explanation
Indices: 65463123--65463323 Score: 185
Period size: 78 Copynumber: 2.6 Consensus size: 78
65463113 CAGTGATGTT
** * * * * *
65463123 TATCCGGACTTAGGGTCCGCAGGCTATGTA-TTGGAATTATATCCGGACTTAGGGTCCGTAGGCT
1 TATCCGGACTTAAAGTCCGCAAGCTATG-AGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCT
* *
65463187 ATGTGCTGGAATTA
65 ACGTGCTGGAAATA
* * * * *
65463201 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACTGGACTTAAGGTTCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAAGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
65463266 CGTGCTGGAAATA
66 CGTGCTGGAAATA
* * * *
65463279 TGTCCGGGC-TAAAGTCCCTCAAGCT-TCGAGCTGGTATTAT-ACCGG
1 TATCCGGACTTAAAGT-CCGCAAGCTAT-GAGCTGGAATTATAACCGG
65463324 GTTTAAATTT
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
77 10 0.10
78 92 0.90
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAAGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATA
Found at i:65470356 original size:46 final size:45
Alignment explanation
Indices: 65470289--65470458 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 45
65470279 TGTAACTCGC
65470289 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGC-TTCGCAT
* * *
65470335 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAG--GCTTCGCAT
* *** *
65470381 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGG-C-TTCGCAT
65470428 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
65470459 TTCGGATGCT
Statistics
Matches: 103, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 67 0.65
47 32 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCTTCGCAT
Found at i:65470409 original size:93 final size:93
Alignment explanation
Indices: 65470297--65470467 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
65470287 GCCCATAAGT
*
65470297 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65470361 ACGAGCTCAGATGCCTAGTTACATCTCTC
65 ACGAGCTCAGATGCCTAGTTACATCTCTC
*
65470390 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
65470455 CGAGTTCGGATGC
66 CGAGCTCAGATGC
65470468 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:65470483 original size:46 final size:46
Alignment explanation
Indices: 65470294--65470483 Score: 128
Period size: 46 Copynumber: 4.1 Consensus size: 46
65470284 CTCGCCCATA
* * *
65470294 AGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTC-GGATGCTCAACCATCC-T
*
65470339 AAGTGAACTCGGACTCAACTCAACGAGCTCAGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CT
* * * * * *
65470389 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCT
*
65470433 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
65470479 AGTGA
1 AGTGA
65470484 CATGGCACTT
Statistics
Matches: 114, Mismatches: 14, Indels: 32
0.71 0.09 0.20
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 63 0.55
47 29 0.25
49 4 0.04
50 6 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:65475234 original size:27 final size:27
Alignment explanation
Indices: 65475173--65475250 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
65475163 TAGAAATATT
*
65475173 ATCAGGTGGGCCTTAA-CCCATTAACAGA
1 ATCAGGTGGGCC-TAAGCCCAAT-ACAGA
65475201 ATCAGGTGGGCCTAAGCCCAATACAGA
1 ATCAGGTGGGCCTAAGCCCAATACAGA
*
65475228 ATTAGGTGGGCCTAAGCCCAATA
1 ATCAGGTGGGCCTAAGCCCAATA
65475251 TAATTTCACT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 30 0.64
28 17 0.36
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
ATCAGGTGGGCCTAAGCCCAATACAGA
Found at i:65480649 original size:39 final size:39
Alignment explanation
Indices: 65480604--65480724 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
65480594 ATGCAAGACA
* * *
65480604 CTGGAAATGTATCTGGTCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65480643 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
65480682 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65480721 CTGG
1 CTGG
65480725 TGCTGGTAAT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:65486309 original size:39 final size:39
Alignment explanation
Indices: 65486264--65486384 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
65486254 ATGCAAGACA
65486264 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65486303 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
65486342 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65486381 CTGG
1 CTGG
65486385 TGCTGGTAAT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:65490189 original size:55 final size:56
Alignment explanation
Indices: 65490102--65490261 Score: 202
Period size: 55 Copynumber: 2.9 Consensus size: 56
65490092 ATTAGGGTTT
65490102 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCA
* * * *
65490157 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAA-GTTTCTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC--TAAGGCA
** * *
65490213 AAGG-CCCCATGTAAGACCACGCCACGGCATGGCAATTGGTAAGGTTTCT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCT
65490262 GAGACCATTT
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
53 5 0.06
54 7 0.08
55 60 0.68
56 11 0.12
57 5 0.06
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCA
Found at i:65495180 original size:55 final size:54
Alignment explanation
Indices: 65495076--65495280 Score: 234
Period size: 55 Copynumber: 3.8 Consensus size: 54
65495066 AAGTTTAAGA
* *
65495076 ATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAACG
1 ATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGCAAAG
* * * *
65495131 ATATCATGTAAGACCATGTCAAGACATGGCATTGATATGTTTCTATAAGGCAAAG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGCAAAG
* * * * *
65495186 GTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGCAAAG
* * * *
65495239 ATACCATGTAATACCATGTCGAGACATGGCAATGGTAAGTTT
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTT
65495281 TGTAACACCC
Statistics
Matches: 124, Mismatches: 23, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
53 46 0.37
54 11 0.09
55 67 0.54
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGCAAAG
Found at i:65496951 original size:27 final size:26
Alignment explanation
Indices: 65496921--65496979 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
65496911 ATAATAGTTG
* * *
65496921 AATTACTTAAATACCCTTATGTATAGA
1 AATTACTGAAATACCCTTAGGTACA-A
*
65496948 AATTACTGATATACCCTTAGGTACAA
1 AATTACTGAAATACCCTTAGGTACAA
65496974 AATTAC
1 AATTAC
65496980 CATTATACCC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34
Consensus pattern (26 bp):
AATTACTGAAATACCCTTAGGTACAA
Found at i:65496986 original size:26 final size:27
Alignment explanation
Indices: 65496921--65496994 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
65496911 ATAATAGTTG
* * * *
65496921 AATTACTTAAATACCCTTATGTATAGA
1 AATTACTCATATACCCTTAGGTACAGA
*
65496948 AATTACTGATATACCCTTAGGTACA-A
1 AATTACTCATATACCCTTAGGTACAGA
*
65496974 AATTAC-CATTATACCCCTAGG
1 AATTACTCA-TATACCCTTAGG
65496995 GTTACTTTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.03
26 18 0.45
27 21 0.52
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AATTACTCATATACCCTTAGGTACAGA
Found at i:65497181 original size:54 final size:53
Alignment explanation
Indices: 65497097--65497207 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 53
65497087 AGGAAGCGTC
*
65497097 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTACCACAT-TATCTGTT
* * ** *
65497151 CTGGTGGCTCTGCCACGATTATCTGTTCTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTACCACATTATCTGTT
65497204 CTGG
1 CTGG
65497208 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 12 0.24
54 39 0.76
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTACCACATTATCTGTT
Found at i:65497204 original size:26 final size:26
Alignment explanation
Indices: 65497097--65497207 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
65497087 AGGAAGCGTC
* * **
65497097 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTACCAC-ATTATCTGTT
65497124 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTACCACAT-TATCTGTT
*
65497151 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTACCAC-ATTATCTGTT
* *
65497178 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTACCACATTATCTGTT
65497204 CTGG
1 CTGG
65497208 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 16 0.22
27 56 0.76
28 2 0.03
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTACCACATTATCTGTT
Found at i:65502982 original size:24 final size:24
Alignment explanation
Indices: 65502950--65503026 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
65502940 AAGTCTGTCA
65502950 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
65502974 GGAGAGGATTTAGGAACGGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
65502998 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
65503022 GGAGA
1 GGAGA
65503027 ACAGTGTTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.34, C:0.04, G:0.43, T:0.19
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:65504541 original size:26 final size:26
Alignment explanation
Indices: 65504434--65504544 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
65504424 AGGAAGCGTC
* * *
65504434 CTGGTGGCTATGCCATTATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGTT
*
65504461 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
65504488 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
65504515 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
65504541 CTGG
1 CTGG
65504545 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 16 0.21
27 57 0.76
28 2 0.03
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:65505718 original size:16 final size:16
Alignment explanation
Indices: 65505697--65505727 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65505687 ATAAATTTGA
65505697 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
65505713 TTAAGTAAGTTAGTA
1 TTAAGTAAGTAAGTA
65505728 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:65510004 original size:93 final size:93
Alignment explanation
Indices: 65509892--65510062 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
65509882 GCCCATAAGT
* *
65509892 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65509957 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
65509985 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65510050 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65510063 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65510078 original size:46 final size:46
Alignment explanation
Indices: 65509884--65510064 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
65509874 TGTAACCCGC
* * *
65509884 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
65509930 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
65509980 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
65510023 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
65510065 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:65512479 original size:30 final size:30
Alignment explanation
Indices: 65512435--65512523 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
65512425 CAAAGATAAC
65512435 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
65512464 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
65512494 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
65512524 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:65512483 original size:15 final size:15
Alignment explanation
Indices: 65512435--65512514 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
65512425 CAAAGATAAC
*
65512435 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
65512449 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
65512464 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
65512479 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
65512494 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
65512509 AAGAAA
1 AAGAAA
65512515 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:65512523 original size:15 final size:15
Alignment explanation
Indices: 65512446--65512523 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
65512436 AGAAAACCGA
65512446 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
65512461 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
65512475 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
65512490 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
65512506 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
65512521 ATA
1 ATA
65512524 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:65515584 original size:93 final size:93
Alignment explanation
Indices: 65515472--65515643 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
65515462 GCCCATAAGT
* *
65515472 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65515537 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
65515565 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65515630 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
65515644 CAAATCCTAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65515639 original size:46 final size:46
Alignment explanation
Indices: 65515464--65515639 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
65515454 TGTAACCCGC
* * *
65515464 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
65515510 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
65515560 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
65515603 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65515640 TGCCCAAATC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:65518091 original size:58 final size:56
Alignment explanation
Indices: 65518027--65518164 Score: 170
Period size: 56 Copynumber: 2.4 Consensus size: 56
65518017 CGTCCCAGAC
*
65518027 GTGGTCTTACAT-GTAATCACATATATCAGAATCACATATCGATGCCAACATATTAAAT
1 GTGGTCTTAC-TCG-AA-CACATATATCAGAATCACATATCAATGCCAACATATTAAAT
* * * * *
65518085 GTGGTCTTACTCGCACACATATATCGGAATCACGTATCAATGCCAACGTGTTAAAT
1 GTGGTCTTACTCGAACACATATATCAGAATCACATATCAATGCCAACATATTAAAT
* *
65518141 GTGGTCTTACTTGCACACATATAT
1 GTGGTCTTACTCGAACACATATAT
65518165 TGATGCCATG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
56 59 0.82
57 2 0.03
58 11 0.15
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (56 bp):
GTGGTCTTACTCGAACACATATATCAGAATCACATATCAATGCCAACATATTAAAT
Found at i:65518115 original size:56 final size:56
Alignment explanation
Indices: 65518044--65518164 Score: 188
Period size: 56 Copynumber: 2.2 Consensus size: 56
65518034 TACATGTAAT
*
65518044 CACATATATCAGAATCACATATCGATGCCAACATATTAAATGTGGTCTTACTCGCA
1 CACATATATCAGAATCACATATCAATGCCAACATATTAAATGTGGTCTTACTCGCA
* * * * *
65518100 CACATATATCGGAATCACGTATCAATGCCAACGTGTTAAATGTGGTCTTACTTGCA
1 CACATATATCAGAATCACATATCAATGCCAACATATTAAATGTGGTCTTACTCGCA
65518156 CACATATAT
1 CACATATAT
65518165 TGATGCCATG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
CACATATATCAGAATCACATATCAATGCCAACATATTAAATGTGGTCTTACTCGCA
Found at i:65519333 original size:19 final size:19
Alignment explanation
Indices: 65519309--65519346 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
65519299 TTGATGATGA
65519309 AATATTAAAGATATGTTTT
1 AATATTAAAGATATGTTTT
*
65519328 AATATTAAAGATGTGTTTT
1 AATATTAAAGATATGTTTT
65519347 GTATTGGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.47
Consensus pattern (19 bp):
AATATTAAAGATATGTTTT
Found at i:65525028 original size:54 final size:53
Alignment explanation
Indices: 65524964--65525068 Score: 183
Period size: 54 Copynumber: 2.0 Consensus size: 53
65524954 AATATGAAAG
*
65524964 TATGGCATTAGGAGCATCGAATTCACACAATTTTAAGGAAAAGTCATCCATACA
1 TATGGCATTAGGAGCATCGAATTCA-ACAATTTTAAGGAAAAATCATCCATACA
*
65525018 TATGGCATTAGGAGCATCGAATTCATCAATTTTAAGGAAAAATCATCCATA
1 TATGGCATTAGGAGCATCGAATTCAACAATTTTAAGGAAAAATCATCCATA
65525069 AAATTGCTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 24 0.49
54 25 0.51
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (53 bp):
TATGGCATTAGGAGCATCGAATTCAACAATTTTAAGGAAAAATCATCCATACA
Found at i:65527913 original size:41 final size:41
Alignment explanation
Indices: 65527868--65527985 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
65527858 TGAAAGATAA
65527868 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
65527909 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65527939 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65527980 ATGTAG
1 ATGTAG
65527986 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:65527924 original size:71 final size:71
Alignment explanation
Indices: 65527836--65527999 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65527826 GAGATGTATC
65527836 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65527901 AGGACA
66 AGGACA
65527907 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65527972 AGGACA
66 AGGACA
65527978 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
65528000 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:65542503 original size:28 final size:29
Alignment explanation
Indices: 65542471--65542569 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
65542461 ATAATAAGCC
*
65542471 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
65542499 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
65542527 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
65542556 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65542570 CAATTCATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:65544874 original size:40 final size:40
Alignment explanation
Indices: 65544830--65545015 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
65544820 GCTACTCGTT
* * *
65544830 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
65544870 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
65544910 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
65544950 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
65544991 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
65545016 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:65550537 original size:45 final size:44
Alignment explanation
Indices: 65550453--65550537 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
65550443 ATGTAATCTG
*
65550453 AACTCATTGAGTTGTGTCTAAGTTCATGATATATGTGACATCCA
1 AACTCATTGAGTTGTGTCTAAGTTCATGATATATATGACATCCA
* * *
65550497 AACTCATTGAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTGAGTTGT-GTCTAAGTTCATGATATATATGACA
65550538 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 15 0.42
45 21 0.58
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTAAGTTCATGATATATATGACATCCA
Found at i:65551177 original size:53 final size:53
Alignment explanation
Indices: 65551097--65551198 Score: 204
Period size: 53 Copynumber: 1.9 Consensus size: 53
65551087 CATCGAAGAC
65551097 ACGATCACACTATCAATTAAACATTTGGGTATAGTTAGTTTCATTATTTAGAT
1 ACGATCACACTATCAATTAAACATTTGGGTATAGTTAGTTTCATTATTTAGAT
65551150 ACGATCACACTATCAATTAAACATTTGGGTATAGTTAGTTTCATTATTT
1 ACGATCACACTATCAATTAAACATTTGGGTATAGTTAGTTTCATTATTT
65551199 TGGATATGGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (53 bp):
ACGATCACACTATCAATTAAACATTTGGGTATAGTTAGTTTCATTATTTAGAT
Found at i:65553293 original size:46 final size:46
Alignment explanation
Indices: 65553226--65553398 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
65553216 AACCCGCCCC
*
65553226 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATGTTCGCATCCA
* ** *
65553272 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CCTGGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC-GCATCCA
* * **
65553318 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
65553365 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65553399 AGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 5 0.05
46 65 0.61
47 33 0.31
48 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:65557436 original size:47 final size:47
Alignment explanation
Indices: 65557385--65557767 Score: 595
Period size: 47 Copynumber: 8.1 Consensus size: 47
65557375 TTAGGATTTT
* *
65557385 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
65557432 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
65557479 ATGTGATGGATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
65557526 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
65557577 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
65557624 ATATGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
65557671 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
65557718 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
65557765 ATG
1 ATG
65557768 CGAAACGTGT
Statistics
Matches: 314, Mismatches: 18, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
47 268 0.85
49 2 0.01
51 44 0.14
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:65557572 original size:145 final size:141
Alignment explanation
Indices: 65557385--65557767 Score: 595
Period size: 145 Copynumber: 2.7 Consensus size: 141
65557375 TTAGGATTTT
* * *
65557385 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
65557450 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGCATATGTGTGATAAGG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
65557515 CCGAATGGCCA
131 CCGAATGGCCA
*
65557526 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
65557591 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGCGTATGTGTGAT
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGAT
65557656 AAGGCCGAATGGCCA
127 AAGGCCGAATGGCCA
* * *
65557671 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * *
65557736 TGAATATATGTGGTAAGGCCGAATGGCTAATG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATG
65557768 CGAAACGTGT
Statistics
Matches: 221, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
141 85 0.38
143 2 0.01
145 134 0.61
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
CCGAATGGCCA
Found at i:65557712 original size:192 final size:188
Alignment explanation
Indices: 65557385--65557767 Score: 658
Period size: 192 Copynumber: 2.0 Consensus size: 188
65557375 TTAGGATTTT
* *
65557385 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACA
* * *
65557450 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGCATATGTGTGATAAGG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
*
65557515 CCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
131 CCGAATGGCCAATGTGATGAATGTGAACACG-A-ATATATGTG-G-TAAGGCCGAATGGCCA
65557577 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACA
65557642 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
* *
65557707 CCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
131 CCGAATGGCCAATGTGATGAATGTGAACACGAATATATGTGGTAAGGCCGAATGGCCA
65557765 ATG
1 ATG
65557768 CGAAACGTGT
Statistics
Matches: 183, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
188 18 0.10
189 1 0.01
190 9 0.05
191 1 0.01
192 154 0.84
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (188 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
CCGAATGGCCAATGTGATGAATGTGAACACGAATATATGTGGTAAGGCCGAATGGCCA
Found at i:65557807 original size:46 final size:46
Alignment explanation
Indices: 65557741--65557831 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
65557731 GAACATGAAT
* * *
65557741 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
65557787 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
65557832 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:65558159 original size:37 final size:37
Alignment explanation
Indices: 65557977--65558159 Score: 321
Period size: 37 Copynumber: 4.9 Consensus size: 37
65557967 GGAAATATAT
*
65557977 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65558014 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
65558051 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65558088 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
65558125 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65558160 CGTCTGAGCT
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 140 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65560917 original size:188 final size:188
Alignment explanation
Indices: 65560642--65561082 Score: 544
Period size: 188 Copynumber: 2.3 Consensus size: 188
65560632 TTATAATGGT
* *
65560642 AAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGATAAAACTACAAATCCTATATCCTTGAAA-T
1 AAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGATAAAGCTACAAATCCTATATCCCT-AAAGT
*
65560706 TACAGTGAAATGGATTAAAATTACAGTAGTGA-ATCTTATCTCCCTAAAATTGCAATGGAGCAAA
65 TACAGTGAAATGGATTAAAATTACAGTAG-CATATCTTATCTCCCTAAAATTGCAATGGAGCAAA
* * * * * * *
65560770 AGGAAACTAAAAATTCTATATCCCTAAAGTTGTAGTAGAATGCATTGAAATTATAGTAGC
129 ACGAAACTAAAAATCCTATATCCCTAAAGTTGAAGTAGAAGGCATTGAAATTACAATAGA
* * *
65560830 GAATCTTATCTCCCTGAAGTTGTAGTAGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAGTT
1 AAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGATAAAGCTACAAATCCTATATCCCTAAAGTT
* * * * * * *
65560895 ACAGTGGAATGGATTGAAATTACAGTAGCATATTTTATCTCCCTGAAGTTGCAGTGGAGCAATAC
66 ACAGTGAAATGGATTAAAATTACAGTAGCATATCTTATCTCCCTAAAATTGCAATGGAGCAAAAC
* * * * * *
65560960 GAAGCTATAAATCCTATATCCCTGAAGTTGAAGTGGCAGGGATTGAAATTACAATAGA
131 GAAACTAAAAATCCTATATCCCTAAAGTTGAAGTAGAAGGCATTGAAATTACAATAGA
* * * * * * * *
65561018 AAATCCTATCTCCCAAAAGGTGCAGTGGAGCAAAATAAAGCTACAAATCCTATACCCCTGAAGTT
1 AAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGATAAAGCTACAAATCCTATATCCCTAAAGTT
65561083 GTAATGGGTC
Statistics
Matches: 214, Mismatches: 37, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
187 4 0.02
188 210 0.98
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (188 bp):
AAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGATAAAGCTACAAATCCTATATCCCTAAAGTT
ACAGTGAAATGGATTAAAATTACAGTAGCATATCTTATCTCCCTAAAATTGCAATGGAGCAAAAC
GAAACTAAAAATCCTATATCCCTAAAGTTGAAGTAGAAGGCATTGAAATTACAATAGA
Found at i:65561083 original size:94 final size:94
Alignment explanation
Indices: 65560642--65561240 Score: 493
Period size: 94 Copynumber: 6.4 Consensus size: 94
65560632 TTATAATGGT
* * * * *
65560642 AAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGATAAAACTACAAATCCTATATCCTTGAAATT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATAAAGCTACAAATCCTATATCCCTGAAGTT
* * *
65560707 -ACAGTGAAATGGATTAAAATTACAGTAGT
66 GA-AGTGGAATGGATTGAAATTACAGTAGA
* * * * * * * *
65560736 GAATCTTATCTCCCTAAAATTGCAATGGAGCAAAAGGAAA-CTAAAAATTCTATATCCCTAAAGT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGA-TAAAGCTACAAATCCTATATCCCTGAAGT
* * * * *
65560800 TGTAGTAGAATGCATTGAAATTATAGTAGC
65 TGAAGTGGAATGGATTGAAATTACAGTAGA
* * * * * *
65560830 GAATCTTATCTCCCTGAAGTTGTAGTAGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATAAAGCTACAAATCCTATATCCCTGAAGTT
*
65560895 -ACAGTGGAATGGATTGAAATTACAGTAGC
66 GA-AGTGGAATGGATTGAAATTACAGTAGA
* * * * ** *
65560924 ATATTTTATCTCCCTGAAGTTGCAGTGGAGCAATACGAAGCTATAAATCCTATATCCCTGAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATAAAGCTACAAATCCTATATCCCTGAAGTT
* * *
65560989 GAAGTGGCAGGGATTGAAATTACAATAGA
66 GAAGTGGAATGGATTGAAATTACAGTAGA
* * * * *
65561018 AAATCCTATCTCCCAAAAGGTGCAGTGGAGCAAAATAAAGCTACAAATCCTATACCCCTGAAGTT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATAAAGCTACAAATCCTATATCCCTGAAGTT
* * * *
65561083 GTAA-TGG-GTCAGAATGAAGTTATCA-T-GA
66 G-AAGTGGAAT-GGATTGAAATTA-CAGTAGA
* *
65561111 CAAATCTTATCTCTCTGAAA-TTGCAGTGGAGCAAGATAAAGCTATAAATCCTATA-CCTCTGAA
1 -AAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAAGATAAAGCTACAAATCCTATATCC-CTGAA
* ** * * *
65561174 GTTGCAGTGGGTTGGAGTAAAATATAACA--A-C
63 GTTGAAGTGGAATGGATTGAAAT-T-ACAGTAGA
* * *
65561205 AAATCTTATCTCCTTAAAGTTGCAATGGAGTAAGAT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGAT
65561241 GTAACTATGA
Statistics
Matches: 409, Mismatches: 79, Indels: 35
0.78 0.15 0.07
Matches are distributed among these distances:
92 3 0.01
93 35 0.09
94 355 0.87
95 15 0.04
96 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (94 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAGATAAAGCTACAAATCCTATATCCCTGAAGTT
GAAGTGGAATGGATTGAAATTACAGTAGA
Found at i:65564595 original size:21 final size:22
Alignment explanation
Indices: 65564570--65564617 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
65564560 AAATTTTAAA
*
65564570 ATTTAAATATATATATAA-ATT
1 ATTTAAAAATATATATAATATT
65564591 ATTTAAAAATATATATAATATT
1 ATTTAAAAATATATATAATATT
*
65564613 TTTTA
1 ATTTA
65564618 TTTTTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTAAAAATATATATAATATT
Found at i:65570133 original size:24 final size:25
Alignment explanation
Indices: 65570090--65570140 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
65570080 GGGGGGGTGG
65570090 GTGGGGGGAGATGTATTTTATGGGC
1 GTGGGGGGAGATGTATTTTATGGGC
65570115 GTGGGGGGAGATGTA-TTTATGGGC
1 GTGGGGGGAGATGTATTTTATGGGC
65570139 GT
1 GT
65570141 TGATTAAGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.16, C:0.04, G:0.49, T:0.31
Consensus pattern (25 bp):
GTGGGGGGAGATGTATTTTATGGGC
Found at i:65582214 original size:69 final size:69
Alignment explanation
Indices: 65582100--65582542 Score: 521
Period size: 69 Copynumber: 6.4 Consensus size: 69
65582090 ATAATGATAA
* * *
65582100 GCAGGGGTGCTTGGAACAGAATCTGCAAAAATA-GATGAGCTCTTCCCCTTGAACATGTTATCTG
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAA-AGGATGAACCCTTCCCCTTGAACATGTTATCTG
65582164 CATAG
65 CATAG
* * * * *
65582169 GCAGGAGTGCTTGGAATAGAATCTGCAAATACGGACGAACCCTTCCCCTTGAACAAGTTATCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAAAGGATGAACCCTTCCCCTTGAACATGTTATCTGC
65582234 ATAG
66 ATAG
* * * ** * *
65582238 GCAGGAGTGCTTGGAACAGAATCTCCAAATATGGATGAACCCTGACCCTTAAACAAGTTATCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAAAGGATGAACCCTTCCCCTTGAACATGTTATCTGC
65582303 ATAG
66 ATAG
* * * * *
65582307 GCAGGAGTGCTTGGAACAGAATCTGCAAACAAGGACGAACTCTTCCCCTTAAACATGCTATCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAAAGGATGAACCCTTCCCCTTGAACATGTTATCTGC
65582372 ATAG
66 ATAG
* * *
65582376 GCCGGAGTGCTTGGAACAGAATCTGC-AAAAAGAGATGAGCCCTTCCCCTGGAACATGTTATCTG
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAAAG-GATGAACCCTTCCCCTTGAACATGTTATCTG
*
65582440 CATAA
65 CATAG
* * ** ** * * * * *
65582445 GCAGGGGTGCTTGGAACAGATTCCCCAAAAACTGATGAGCTCTTCCCCTGGAACATGTCACCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAAAGGATGAACCCTTCCCCTTGAACATGTTATCTGC
*
65582510 GTAG
66 ATAG
*
65582514 GCAGGGGTGCTTGGAACAGAATCTGCAAA
1 GCAGGAGTGCTTGGAACAGAATCTGCAAA
65582543 CAATGGACCT
Statistics
Matches: 323, Mismatches: 48, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
68 5 0.02
69 314 0.97
70 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (69 bp):
GCAGGAGTGCTTGGAACAGAATCTGCAAAAAAGGATGAACCCTTCCCCTTGAACATGTTATCTGC
ATAG
Found at i:65582461 original size:207 final size:208
Alignment explanation
Indices: 65582100--65582550 Score: 604
Period size: 207 Copynumber: 2.2 Consensus size: 208
65582090 ATAATGATAA
* * * * *
65582100 GCAGGGGTGCTTGGAACAGAATCTGCAAA-AATAGATGAGCTCTTCCCCTTGAACATGTTATCTG
1 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGACGAACTCTTCCCCTTAAACATGCTATCTG
* * *
65582164 CATAGGCAGGAGTGCTTGGAATAGAATCTGCAAATACGGACGAACCCTTCCCCTTGAACAAGTTA
66 CATAGGCAGGAGTGCTTGGAACAGAATCTGCAAATAAGGACGAACCCTTCCCCTGGAACAAGTTA
* * * *
65582229 TCTGCATAGGCAGGAGTGCTTGGAACAGAATCTCCAAATA-TGGATGAACCCTGACCCTTAAACA
131 TCTGCATAAGCAGGAGTGCTTGGAACAGAATCCCCAAAAACT-GATGAACCCTGACCCTGAAACA
* *
65582293 AGTTATCTGCATAG
195 AGTCACCTGCATAG
*
65582307 GCAGGAGTGCTTGGAACAGAATCTGCAAACAA-GGACGAACTCTTCCCCTTAAACATGCTATCTG
1 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGACGAACTCTTCCCCTTAAACATGCTATCTG
* * * *
65582371 CATAGGCCGGAGTGCTTGGAACAGAATCTGCAAA-AAGAGATGAGCCCTTCCCCTGGAACATGTT
66 CATAGGCAGGAGTGCTTGGAACAGAATCTGCAAATAAG-GACGAACCCTTCCCCTGGAACAAGTT
* * * * ** *
65582435 ATCTGCATAAGCAGGGGTGCTTGGAACAGATTCCCCAAAAACTGATGAGCTCTTCCCCTGGAACA
130 ATCTGCATAAGCAGGAGTGCTTGGAACAGAATCCCCAAAAACTGATGAACCCTGACCCTGAAACA
* *
65582500 TGTCACCTGCGTAG
195 AGTCACCTGCATAG
65582514 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGAC
1 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGAC
65582551 CTTTCCCTGG
Statistics
Matches: 211, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
206 2 0.01
207 202 0.96
208 7 0.03
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.22
Consensus pattern (208 bp):
GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGACGAACTCTTCCCCTTAAACATGCTATCTG
CATAGGCAGGAGTGCTTGGAACAGAATCTGCAAATAAGGACGAACCCTTCCCCTGGAACAAGTTA
TCTGCATAAGCAGGAGTGCTTGGAACAGAATCCCCAAAAACTGATGAACCCTGACCCTGAAACAA
GTCACCTGCATAG
Found at i:65593071 original size:40 final size:39
Alignment explanation
Indices: 65593026--65593155 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
65593016 CGGAATATAA
65593026 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
65593066 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65593106 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
65593146 CCGGATATAA
1 CCGGATATAA
65593156 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:65593170 original size:40 final size:40
Alignment explanation
Indices: 65593042--65593193 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
65593032 ATAACCATGT
* * *
65593042 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
65593082 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
65593122 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
65593162 GCATAATTGTCTACGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
65593194 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 85 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:65599276 original size:29 final size:29
Alignment explanation
Indices: 65599236--65599338 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
65599226 GTTGAGAGAT
*
65599236 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
65599265 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
65599294 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
65599323 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65599339 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:65607348 original size:29 final size:29
Alignment explanation
Indices: 65607308--65607410 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
65607298 GTTGAGAGAT
*
65607308 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
65607337 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
65607366 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
65607395 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65607411 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:65609756 original size:27 final size:27
Alignment explanation
Indices: 65609702--65609812 Score: 154
Period size: 27 Copynumber: 4.1 Consensus size: 27
65609692 AGCATGGCTG
* *
65609702 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
65609728 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
65609755 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
65609782 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
65609809 CCAG
1 CCAG
65609813 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 15 0.19
27 61 0.79
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:65611243 original size:25 final size:24
Alignment explanation
Indices: 65611215--65611286 Score: 110
Period size: 23 Copynumber: 3.0 Consensus size: 24
65611205 CTCCTTGATA
*
65611215 AGCTCCTAATTCTTCTCCCCTTATC
1 AGCTCCTAAATCTTCT-CCCTTATC
*
65611240 AGCTCCTAAATCTTCTCCCTTACC
1 AGCTCCTAAATCTTCTCCCTTATC
65611264 AGCT-CTAAATCTTCTCCCTTATC
1 AGCTCCTAAATCTTCTCCCTTATC
65611287 CCCTCCTTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 18 0.41
24 11 0.25
25 15 0.34
ACGTcount: A:0.19, C:0.39, G:0.04, T:0.38
Consensus pattern (24 bp):
AGCTCCTAAATCTTCTCCCTTATC
Found at i:65614880 original size:40 final size:39
Alignment explanation
Indices: 65614821--65614947 Score: 173
Period size: 40 Copynumber: 3.2 Consensus size: 39
65614811 CATTTGAATG
* *
65614821 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TT
* * *
65614861 ATATCCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTT
* *
65614901 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
65614940 ATATCCGG
1 ATATCCGG
65614948 TTAAATCCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
39 12 0.16
40 62 0.82
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
Found at i:65618898 original size:40 final size:40
Alignment explanation
Indices: 65618811--65619022 Score: 203
Period size: 40 Copynumber: 5.3 Consensus size: 40
65618801 CCTTCAGAAT
* * *
65618811 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
65618850 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
65618890 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
65618930 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * * *
65618970 TTAGCCCAGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
65619010 TTAGCCCGGATAT
1 TTAACCCGGATAT
65619023 CATTCCAATG
Statistics
Matches: 142, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
38 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:65618936 original size:80 final size:80
Alignment explanation
Indices: 65618818--65619022 Score: 232
Period size: 80 Copynumber: 2.6 Consensus size: 80
65618808 AATTTAACCG
* * * ** * ***
65618818 GATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC-AATTGCC
1 GATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCACGAA-TGCC
*
65618882 TTCGGGTCTTAACCCG
65 TTCGGGTCTTAACCCA
* ** * *
65618898 GATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCT
1 GATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCT
*
65618963 TCGGGTCTTAGCCCA
66 TCGGGTCTTAACCCA
* *
65618978 GATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 GATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
65619023 CATTCCAATG
Statistics
Matches: 102, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 100 0.98
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
GATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCT
TCGGGTCTTAACCCA
Found at i:65626057 original size:40 final size:39
Alignment explanation
Indices: 65625998--65626124 Score: 173
Period size: 40 Copynumber: 3.2 Consensus size: 39
65625988 CATTTGAATG
* *
65625998 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TT
* * *
65626038 ATATCCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTT
* *
65626078 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTTGTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
65626117 ATATCCGG
1 ATATCCGG
65626125 TTAAATCCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
39 12 0.16
40 62 0.82
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
Found at i:65627697 original size:40 final size:40
Alignment explanation
Indices: 65627652--65627818 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
65627642 CGGAATATAA
65627652 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65627692 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
65627732 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65627772 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65627811 CCGGATAT
1 CCGGATAT
65627819 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65627802 original size:80 final size:79
Alignment explanation
Indices: 65627652--65627818 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
65627642 CGGAATATAA
* *
65627652 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
65627717 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
65627732 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
65627794 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
65627811 CCGGATAT
1 CCGGATAT
65627819 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:65628666 original size:17 final size:19
Alignment explanation
Indices: 65628643--65628688 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65628633 AAGAAGCATG
65628643 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65628661 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65628679 AATCATGCTC
1 AATCATGCTC
65628689 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65635706 original size:40 final size:40
Alignment explanation
Indices: 65635661--65635827 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
65635651 CGGAATATAA
65635661 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65635701 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
65635741 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65635781 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65635820 CCGGATAT
1 CCGGATAT
65635828 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.