Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 219 of 328
Found at i:65635811 original size:80 final size:79
Alignment explanation
Indices: 65635661--65635827 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
65635651 CGGAATATAA
* *
65635661 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
65635726 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
65635741 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
65635803 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
65635820 CCGGATAT
1 CCGGATAT
65635828 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:65636675 original size:17 final size:19
Alignment explanation
Indices: 65636652--65636697 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65636642 AAGAAGCATG
65636652 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65636670 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65636688 AATCATGCTC
1 AATCATGCTC
65636698 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65641823 original size:40 final size:40
Alignment explanation
Indices: 65641721--65641871 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
65641711 AAATTGAATG
* * * * *
65641721 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
65641761 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
65641801 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* *
65641841 CTATCCGGGCTAAGA-CCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
65641872 ACATGCTTAT
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:65641885 original size:39 final size:39
Alignment explanation
Indices: 65641759--65641887 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 39
65641749 ATGCTGGAAA
* * *
65641759 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
65641800 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
65641838 ATTCTATCCGGGCTAAGA-CCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
65641878 TTATATCCGG
1 TTATATCCGG
65641888 TTATATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 24 0.32
40 47 0.64
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:65647400 original size:40 final size:40
Alignment explanation
Indices: 65647355--65647521 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
65647345 CGGAATATAA
65647355 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65647395 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
65647435 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65647475 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65647514 CCGGATAT
1 CCGGATAT
65647522 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65647505 original size:80 final size:79
Alignment explanation
Indices: 65647371--65647521 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
65647361 ATAATCACGT
*
65647371 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
65647436 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
65647451 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
65647514 CCGGATAT
64 CCGGATAT
65647522 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:65648370 original size:17 final size:19
Alignment explanation
Indices: 65648347--65648392 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65648337 AAGAAGCATG
65648347 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65648365 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65648383 AATCATGCTC
1 AATCATGCTC
65648393 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65655348 original size:40 final size:40
Alignment explanation
Indices: 65655303--65655469 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
65655293 CGGAATATAA
65655303 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65655343 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
65655383 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65655423 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65655462 CCGGATAT
1 CCGGATAT
65655470 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65655453 original size:80 final size:79
Alignment explanation
Indices: 65655303--65655469 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
65655293 CGGAATATAA
* *
65655303 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
65655368 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
65655383 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
65655445 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
65655462 CCGGATAT
1 CCGGATAT
65655470 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:65656318 original size:17 final size:19
Alignment explanation
Indices: 65656295--65656340 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65656285 AAGAAGCATG
65656295 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65656313 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65656331 AATCATGCTC
1 AATCATGCTC
65656341 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65659432 original size:45 final size:45
Alignment explanation
Indices: 65659370--65659578 Score: 141
Period size: 45 Copynumber: 4.8 Consensus size: 45
65659360 TAGGATTCTG
* * *
65659370 ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCATGTAAGACCACGTCTAGGACATAGGCATCGAT
**
65659415 ATATGTGTTTTGGTGTAAGACCACGTCTAGGACATAGGCATCGAT
1 ATATGTGTTTTCATGTAAGACCACGTCTAGGACATAGGCATCGAT
* * * * * *
65659460 ATACGT-TATTTCGA-GTAAGACCATGGCTGGGACATCGGAATC-AT
1 ATATGTGT-TTTC-ATGTAAGACCACGTCTAGGACATAGGCATCGAT
* * * *
65659504 AT-T-TG-ATTCGTGTAAGACC-CTATCTGGGACAGT-GGCATCG--
1 ATATGTGTTTTCATGTAAGACCAC-GTCTAGGACA-TAGGCATCGAT
* * **
65659544 ATATGAGATAGCATGTAAGACCACGTCTAGGACAT
1 ATATGTGTTTTCATGTAAGACCACGTCTAGGACAT
65659579 TGGTATTGTA
Statistics
Matches: 126, Mismatches: 27, Indels: 25
0.71 0.15 0.14
Matches are distributed among these distances:
40 2 0.02
41 25 0.20
42 4 0.03
43 18 0.14
44 6 0.05
45 71 0.56
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (45 bp):
ATATGTGTTTTCATGTAAGACCACGTCTAGGACATAGGCATCGAT
Found at i:65660973 original size:13 final size:13
Alignment explanation
Indices: 65660957--65660982 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65660947 TTTTCGTAGG
65660957 TATTTTTTATTTT
1 TATTTTTTATTTT
65660970 TATTTTTTATTTT
1 TATTTTTTATTTT
65660983 ATAAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:65661925 original size:23 final size:23
Alignment explanation
Indices: 65661842--65661925 Score: 61
Period size: 21 Copynumber: 3.8 Consensus size: 23
65661832 ACTTGATTAG
* *
65661842 AATACGACACATAAAGTTCTT-A
1 AATACGACACACAAAGTGCTTGA
* * *
65661864 AA-ACAACACACGAAGTGCCTG-
1 AATACGACACACAAAGTGCTTGA
*
65661885 -ATAC-AGCACACAAGGTGCTTGA
1 AATACGA-CACACAAAGTGCTTGA
*
65661907 AATACGACACATAAAGTGC
1 AATACGACACACAAAGTGC
65661926 CTGATCAGTA
Statistics
Matches: 46, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
20 2 0.04
21 27 0.59
22 2 0.04
23 14 0.30
24 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.18
Consensus pattern (23 bp):
AATACGACACACAAAGTGCTTGA
Found at i:65663100 original size:23 final size:23
Alignment explanation
Indices: 65663068--65663127 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
65663058 GTAAATTAGT
*
65663068 TATTTTTATTACAAGTGTA-C-A
1 TATTTTTATTACAAATGTACCAA
65663089 TATCTATTTATTACAAATGTACCAA
1 TAT-T-TTTATTACAAATGTACCAA
65663114 TATTTTTATTACAA
1 TATTTTTATTACAA
65663128 TTGTTATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 3 0.09
22 1 0.03
23 24 0.71
24 2 0.06
25 4 0.12
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.47
Consensus pattern (23 bp):
TATTTTTATTACAAATGTACCAA
Found at i:65663377 original size:27 final size:27
Alignment explanation
Indices: 65663340--65663402 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
65663330 ATACCAATTA
* * *
65663340 AATAATTATAACTTAATATGAAACCAT
1 AATAATAATAACTTAATATAAAACCAC
*
65663367 AATAATAATAATTTAATATAAAACCAC
1 AATAATAATAACTTAATATAAAACCAC
*
65663394 ACTAATAAT
1 AATAATAAT
65663403 TAATAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.56, C:0.11, G:0.02, T:0.32
Consensus pattern (27 bp):
AATAATAATAACTTAATATAAAACCAC
Found at i:65666279 original size:41 final size:41
Alignment explanation
Indices: 65666222--65666299 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
65666212 AGGGTTACAG
65666222 AGCATTACCAGACTTATAACACAATAAACATACATTTCATA
1 AGCATTACCAGACTTATAACACAATAAACATACATTTCATA
*
65666263 AGCATTACCAGACTTATAGCACAATAAACATACATTT
1 AGCATTACCAGACTTATAACACAATAAACATACATTT
65666300 AACATACATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.27
Consensus pattern (41 bp):
AGCATTACCAGACTTATAACACAATAAACATACATTTCATA
Found at i:65670074 original size:40 final size:40
Alignment explanation
Indices: 65670030--65670135 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 40
65670020 TTCACAATTT
* *
65670030 GCACAAATGACTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGACTTCGGGTCTTAGCCCGGATGTAATCACCA
* * * * *
65670070 GCACAATTGCCTTCGGGTCTTAACCTGGATGTAATTACCA
1 GCACAAATGACTTCGGGTCTTAGCCCGGATGTAATCACCA
* *
65670110 GCACAAATGTCTTCGGGACTTAGCCC
1 GCACAAATGACTTCGGGTCTTAGCCC
65670136 TGATATCATT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGACTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:65671913 original size:27 final size:27
Alignment explanation
Indices: 65671883--65672026 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
65671873 TACTGAAATG
** * *
65671883 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * * *
65671910 CCCTCGATTTATAGAATTACCGTGTCA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
65671937 CCCTTGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
** *
65671964 CCCTTAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
65671991 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
65672018 CCCTCGATT
1 CCCTCGATT
65672027 CTAAAATTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 100 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:65672145 original size:81 final size:81
Alignment explanation
Indices: 65672058--65672207 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
65672048 TGTAGGATAG
** *
65672058 AATTACCAAAATACCC-CTAATTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAGA
65672121 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
* *
65672139 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACTCCTGATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
65672204 TACC
66 TACC
65672208 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
81 60 0.97
82 2 0.03
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:65672259 original size:27 final size:28
Alignment explanation
Indices: 65672186--65672263 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
65672176 ATACTCCTGA
* *
65672186 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCATTGAC
*
65672214 TTT-CTAAAAATTA-TAGAAATACCATTG-G
1 TTTAC--AAAATTACT-GAAATACCATTGAC
65672242 TTTACAAAATTACTGAAATACC
1 TTTACAAAATTACTGAAATACC
65672264 CTTAGTTTGT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
27 16 0.38
28 7 0.17
29 19 0.45
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.32
Consensus pattern (28 bp):
TTTACAAAATTACTGAAATACCATTGAC
Found at i:65672271 original size:27 final size:27
Alignment explanation
Indices: 65672028--65672293 Score: 187
Period size: 27 Copynumber: 9.8 Consensus size: 27
65672018 CCCTCGATTC
* **
65672028 TAAAATTACTGAAATACCCTT-GTAGG
1 TAAAATTACCGAAATACCCTTAGTTTG
* * * *
65672054 ATAGAATTACCAAAATACCCCTAATTTG
1 -TAAAATTACCGAAATACCCTTAGTTTG
* *
65672082 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCGAAATACCCTTAGTTTG
*
65672109 TAAAATTACCGAAATACCAC-TGGTTTG
1 TAAAATTACCGAAATACC-CTTAGTTTG
* * *
65672136 TGAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCGAAATACCCTTAGTTTG
* * *
65672163 TAAAATTACCAAAATACTCCTGA-TTTA
1 TAAAATTACCGAAATAC-CCTTAGTTTG
* * * *
65672190 CAAAATTACAGAAATACCCTTGACTTTC
1 TAAAATTACCGAAATACCCTT-AGTTTG
** * * *
65672218 TAAAAATTATAGAAATACCATTGGTTTA
1 T-AAAATTACCGAAATACCCTTAGTTTG
* *
65672246 CAAAATTACTGAAATACCCTTAGTTTG
1 TAAAATTACCGAAATACCCTTAGTTTG
* * * *
65672273 TAGATTTACCAAAACACCCTT
1 TAAAATTACCGAAATACCCTT
65672294 GTAGGATGAA
Statistics
Matches: 190, Mismatches: 42, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
26 4 0.02
27 155 0.82
28 13 0.07
29 18 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTTAGTTTG
Found at i:65672389 original size:27 final size:26
Alignment explanation
Indices: 65672323--65672389 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
65672313 ATACCCCTAA
*
65672323 TAGGTAAAAAGACCGTAAAACCCCTG
1 TAGGTAAAATGACCGTAAAACCCCTG
* * *
65672349 TAGAGTAAAGTGACCGTAATACCCTTG
1 TAG-GTAAAATGACCGTAAAACCCCTG
65672376 TATGGTAAAATGAC
1 TA-GGTAAAATGAC
65672390 GAATATGCCC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.09
27 30 0.88
28 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (26 bp):
TAGGTAAAATGACCGTAAAACCCCTG
Found at i:65673227 original size:25 final size:25
Alignment explanation
Indices: 65673171--65673227 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
65673161 AGGAAGTGCT
*
65673171 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAAGTTATCA
*
65673196 AAAAGGGCTTTGCCCC-AGTTATTA
1 AAAAGGGCTTTGCCCCAAGTTATCA
65673220 AAAGAGGG
1 AAA-AGGG
65673228 TAGGCCTCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 9 0.31
25 20 0.69
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAAGTTATCA
Found at i:65682543 original size:93 final size:95
Alignment explanation
Indices: 65682301--65682568 Score: 257
Period size: 93 Copynumber: 2.8 Consensus size: 95
65682291 ATCGAGGCCG
* * * * *
65682301 ATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCACATATCTGTGCCGATGCCATGTCCCATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCGATG-CATGTCCCAGA
*
65682366 CATGGTCTTACACT-G-ACACCTCTATACGTGCCG
63 CAT-GTCTTACACTAGCACACCTCTATAC-TGCCA
* * * * *
65682399 ATG-CATGTCCCAGACATGTTC-TACATTGGCT-TACAT-CTCGAGGCCGATGCATGTCCTAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGAC
* *
65682460 ATGTCTTACACTAGCTCTCC-CTCA-A-TGCCA
64 ATGTCTTACACTAGCACACCTCT-ATACTGCCA
* *
65682490 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCGGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACAT
*
65682555 GTCTTACAGTAGCA
66 GTCTTACACTAGCA
65682569 GACAAATAAC
Statistics
Matches: 139, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
91 7 0.05
92 27 0.19
93 60 0.43
94 14 0.10
95 2 0.01
96 9 0.06
97 17 0.12
98 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACACCTCTATACTGCCA
Found at i:65683939 original size:13 final size:13
Alignment explanation
Indices: 65683921--65683947 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
65683911 GCTCGAGAGA
65683921 GACACGCCTGTGT
1 GACACGCCTGTGT
65683934 GACACGCCTGTGT
1 GACACGCCTGTGT
65683947 G
1 G
65683948 CAATTGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:65692319 original size:21 final size:20
Alignment explanation
Indices: 65692295--65692333 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65692285 CCATGTTGAT
65692295 TTCGTACTTTGGCCCATTTTC
1 TTCGT-CTTTGGCCCATTTTC
*
65692316 TTCGTTTTTGGCCCATTT
1 TTCGTCTTTGGCCCATTT
65692334 CTAGTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.08, C:0.26, G:0.15, T:0.51
Consensus pattern (20 bp):
TTCGTCTTTGGCCCATTTTC
Found at i:65715689 original size:94 final size:93
Alignment explanation
Indices: 65715441--65715707 Score: 253
Period size: 94 Copynumber: 2.9 Consensus size: 93
65715431 TTGGATAAAT
* * * * *
65715441 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATGCGTGCTGATGCACGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCGAAGCATGTCC
* *
65715506 CAAACATGTCTTACACTAGCACAACTCTTA
64 CAGACATGTCTTACACTAGCACAACTCTGA
* * * * * * *
65715536 -ACCGATG-CGTGTCCTAGACA-CGTCTTACATTGGCTAC-C-T-CTGTCCAGG-CTAATGCATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTCATAATGT---GGCCGAA-GCATG
* *
65715594 TCCTAGACATGTCTTACACTAGC-CCACATCTGGA
61 TCCCAGACATGTCTTACACTAGCACAAC-TCT-GA
65715628 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
65715693 GACATGTCTTACACT
66 GACATGTCTTACACT
65715708 GGCGCACAAA
Statistics
Matches: 134, Mismatches: 24, Indels: 29
0.72 0.13 0.16
Matches are distributed among these distances:
89 2 0.01
90 4 0.03
91 30 0.22
92 15 0.11
93 18 0.13
94 44 0.33
95 17 0.13
96 1 0.01
97 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
GACATGTCTTACACTAGCACAACTCTGA
Found at i:65723243 original size:46 final size:46
Alignment explanation
Indices: 65723089--65723240 Score: 128
Period size: 46 Copynumber: 3.3 Consensus size: 46
65723079 TGTCTCGAAT
* * **
65723089 ATGTCTTACTCTAGCACTCATAATATGGTTGAAGCATGTCCAAGAC
1 ATGTCTTACACTAGCACTCATAATGTGGCCGAAGCATGTCCAAGAC
* * * * * * *
65723135 ATATCTTACACTAGCCCTCGT-CTAGAT-GCCGATGCCATGTCCTATAC
1 ATGTCTTACACTAGCACTCATAAT-G-TGGCCGAAG-CATGTCCAAGAC
* * *
65723182 ATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGAC
1 AT-GTCTTACACTAGCACTCATAATGTGGCCGAAGCATGTCCAAGAC
65723229 ATGTCTTACACT
1 ATGTCTTACACT
65723241 GGCGCACAAA
Statistics
Matches: 81, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
45 1 0.01
46 31 0.38
47 26 0.32
48 22 0.27
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (46 bp):
ATGTCTTACACTAGCACTCATAATGTGGCCGAAGCATGTCCAAGAC
Found at i:65723623 original size:30 final size:30
Alignment explanation
Indices: 65723587--65723644 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
65723577 CACAACTTTA
* *
65723587 GCAAAATGACCATTTTGCCCCTAGGCCTTG
1 GCAAAATAACCATTTTACCCCTAGGCCTTG
*
65723617 GCAAAATAACCATTTTACCCCTATGCCT
1 GCAAAATAACCATTTTACCCCTAGGCCT
65723645 GAAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (30 bp):
GCAAAATAACCATTTTACCCCTAGGCCTTG
Found at i:65734357 original size:42 final size:42
Alignment explanation
Indices: 65734249--65734412 Score: 163
Period size: 42 Copynumber: 3.9 Consensus size: 42
65734239 TTCCGATATG
* *
65734249 TGATTTCGTGTAAGACCAC-GTCTAGGACATTGGCATCG-ATT
1 TGATTTCATGTAAGACC-CTGTCTGGGACATTGGCATCGTATT
* * *
65734290 TGAGATTTACATGTAAGACCATGTCTGGGACATTGACATCGTATA
1 T--GATTT-CATGTAAGACCCTGTCTGGGACATTGGCATCGTATT
* * * *
65734335 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATAGATATT
1 TGATTTCATGTAAGACCCTGTCTGGGACATTGGCATCG-TATT
* *
65734378 TGATTACAT-TAAGACCTTGTCTGGGACATTGGCAT
1 TGATTTCATGTAAGACCCTGTCTGGGACATTGGCAT
65734413 TCTATGAGCT
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 49 0.49
43 20 0.20
44 27 0.27
45 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
TGATTTCATGTAAGACCCTGTCTGGGACATTGGCATCGTATT
Found at i:65746988 original size:90 final size:90
Alignment explanation
Indices: 65746855--65747019 Score: 219
Period size: 90 Copynumber: 1.8 Consensus size: 90
65746845 GTTTGGGTTG
* * * *
65746855 ATGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCG-GTATGTGTTAT-C-ATGT
1 ATGAGATCCCATATAAGACCATACCTGGGACATGGCATCGGCATCGAGT-TGTG--ATCCTAAGT
65746917 AAGACCATATCTGAGATGTGGTGTTGAT
63 AAGACCATATCTGAGATGTGGTGTTGAT
* * *
65746945 ATGAGATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCGAGTTGTGATCCTAAGTAAG
1 ATGAGATCCCATATAAGACCATACCTGGGACATGGCATCGGCATCGAGTTGTGATCCTAAGTAAG
65747010 ACCATATCTG
66 ACCATATCTG
65747020 GGATATGGCG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
88 2 0.03
89 1 0.02
90 60 0.92
91 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (90 bp):
ATGAGATCCCATATAAGACCATACCTGGGACATGGCATCGGCATCGAGTTGTGATCCTAAGTAAG
ACCATATCTGAGATGTGGTGTTGAT
Found at i:65748437 original size:66 final size:66
Alignment explanation
Indices: 65748367--65748496 Score: 188
Period size: 66 Copynumber: 2.0 Consensus size: 66
65748357 TAACCCCTTA
* * *
65748367 AATCAACAACCCTTTAAACCCCAGACCCTAAATCTCTAATCATAAACCCCTAAAACTATAAACAC
1 AATCAACAACCCTTTAAACACCAGACCCTAAATATCAAATCATAAACCCCTAAAACTATAAACAC
65748432 T
66 T
* * * * *
65748433 AATCAATAACTCTTTAAACACCAGACCCTAAATATCAAATCATAAACTCTTAAAACTCTAAACA
1 AATCAACAACCCTTTAAACACCAGACCCTAAATATCAAATCATAAACCCCTAAAACTATAAACA
65748497 ATAAACCTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.23
Consensus pattern (66 bp):
AATCAACAACCCTTTAAACACCAGACCCTAAATATCAAATCATAAACCCCTAAAACTATAAACAC
T
Found at i:65748568 original size:8 final size:8
Alignment explanation
Indices: 65748557--65748600 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
65748547 TTAAAACTCC
65748557 AACCCCTA
1 AACCCCTA
65748565 AACCCCTA
1 AACCCCTA
65748573 AACCCCTA
1 AACCCCTA
65748581 AACCCC--
1 AACCCCTA
*
65748587 AACCCTTA
1 AACCCCTA
65748595 AACCCC
1 AACCCC
65748601 AAGCCATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 5 0.16
8 27 0.84
ACGTcount: A:0.36, C:0.52, G:0.00, T:0.11
Consensus pattern (8 bp):
AACCCCTA
Found at i:65748591 original size:30 final size:31
Alignment explanation
Indices: 65748540--65748600 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
65748530 TCTCAAATCA
* *
65748540 TAAACCCTTAAAACTCCAACCCCTAAACCCC
1 TAAACCCCTAAAACCCCAACCCCTAAACCCC
*
65748571 TAAACCCCT-AAACCCCAACCCTTAAACCCC
1 TAAACCCCTAAAACCCCAACCCCTAAACCCC
65748601 AAGCCATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.15
Consensus pattern (31 bp):
TAAACCCCTAAAACCCCAACCCCTAAACCCC
Found at i:65748596 original size:14 final size:14
Alignment explanation
Indices: 65748550--65748602 Score: 70
Period size: 14 Copynumber: 3.6 Consensus size: 14
65748540 TAAACCCTTA
*
65748550 AAACTCCAACCCCT
1 AAACCCCAACCCCT
65748564 AAACCCCTAAACCCCT
1 AAACCCC--AACCCCT
*
65748580 AAACCCCAACCCTT
1 AAACCCCAACCCCT
65748594 AAACCCCAA
1 AAACCCCAA
65748603 GCCATAAAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 21 0.60
16 14 0.40
ACGTcount: A:0.40, C:0.49, G:0.00, T:0.11
Consensus pattern (14 bp):
AAACCCCAACCCCT
Found at i:65748610 original size:14 final size:14
Alignment explanation
Indices: 65748550--65748610 Score: 59
Period size: 14 Copynumber: 4.2 Consensus size: 14
65748540 TAAACCCTTA
* *
65748550 AAACTCCAACCCCT
1 AAACCCCAACCCAT
*
65748564 AAACCCCTAAACCCCT
1 AAACCCC--AACCCAT
*
65748580 AAACCCCAACCCTT
1 AAACCCCAACCCAT
*
65748594 AAACCCCAAGCCAT
1 AAACCCCAACCCAT
65748608 AAA
1 AAA
65748611 ACAATGTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 27 0.66
16 14 0.34
ACGTcount: A:0.41, C:0.46, G:0.02, T:0.11
Consensus pattern (14 bp):
AAACCCCAACCCAT
Found at i:65748904 original size:8 final size:8
Alignment explanation
Indices: 65748893--65749081 Score: 357
Period size: 8 Copynumber: 24.0 Consensus size: 8
65748883 ACTCAAAAAA
65748893 TAAAAATT
1 TAAAAATT
65748901 T-AAAATT
1 TAAAAATT
65748908 T-AAAATT
1 TAAAAATT
65748915 T-AAAATT
1 TAAAAATT
65748922 TAAAAATT
1 TAAAAATT
65748930 TAAAAATT
1 TAAAAATT
65748938 TAAAAATT
1 TAAAAATT
65748946 TAAAAATT
1 TAAAAATT
65748954 TAAAAATT
1 TAAAAATT
65748962 TAAAAATT
1 TAAAAATT
65748970 TAAAAATT
1 TAAAAATT
65748978 TAAAAATT
1 TAAAAATT
65748986 TAAAAATT
1 TAAAAATT
65748994 TAAAAATT
1 TAAAAATT
65749002 TAAAAATT
1 TAAAAATT
65749010 TAAAAATT
1 TAAAAATT
65749018 TAAAAATT
1 TAAAAATT
65749026 TAAAAATT
1 TAAAAATT
65749034 TAAAAATT
1 TAAAAATT
65749042 TAAAAATT
1 TAAAAATT
65749050 TAAAAATT
1 TAAAAATT
65749058 TAAAAATT
1 TAAAAATT
65749066 TAAAAATT
1 TAAAAATT
65749074 TAAAAATT
1 TAAAAATT
65749082 AATATTTTAG
Statistics
Matches: 180, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
7 21 0.12
8 159 0.88
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAAAAATT
Found at i:65751955 original size:23 final size:23
Alignment explanation
Indices: 65751928--65752255 Score: 195
Period size: 23 Copynumber: 14.3 Consensus size: 23
65751918 TGGCTGCTGT
65751928 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
65751951 TGTTTGAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
65751974 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* *
65751997 TGTTTAAGTACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* ***
65752020 TGTTGAAGCACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
** *
65752043 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
* * *
65752065 ATGTTT-TATCGTTG-TAATTG-AG
1 -TGTTTAAAT-GCTGCAAATTGAAG
** * **
65752087 TTGTACAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGCAAATTGAAG
*
65752110 ATG-TTAAAGTGCTGCAAATTGAAA
1 -TGTTTAAA-TGCTGCAAATTGAAG
* *
65752134 TGTTTAAATACTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
** * *
65752157 TACTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAAG
* * *
65752180 TGTTTTAAGTACTACAAATTGAAG
1 TG-TTTAAATGCTGCAAATTGAAG
** *
65752204 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAAG
* * *
65752226 ATGTTT-CATCGCTACAAATTCAAG
1 -TGTTTAAAT-GCTGCAAATTGAAG
65752250 TGTTTA
1 TGTTTA
65752256 GTTGTTGGAA
Statistics
Matches: 238, Mismatches: 55, Indels: 23
0.75 0.17 0.07
Matches are distributed among these distances:
22 23 0.10
23 190 0.80
24 25 0.11
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (23 bp):
TGTTTAAATGCTGCAAATTGAAG
Found at i:65752175 original size:114 final size:114
Alignment explanation
Indices: 65751931--65752186 Score: 268
Period size: 114 Copynumber: 2.2 Consensus size: 114
65751921 CTGCTGTTGT
* * * **
65751931 TTAAATGCTGCAAATTGAAGTGTTTGAAT-GCTGTAAATTGAAG-TGTTTAAATGTTGTAAATTG
1 TTAAATGCTGGAAATTGAAGTGTTT-TATCGTTGT-AATTG-AGTTGTACAAATGTTGTAAATTG
* * * **
65751994 AAGTGTTTAAGTACTGCAAATTGAAGTGTTGAAGCACTGCAAATTGAAGTGT
63 AAGTGTTAAAGTACTGCAAATTGAAATGTTGAAACACTGCAAATTGAAGTAC
** *
65752046 TTAGTTGCTGGAAATTG-AGATGTTTTATCGTTGTAATTGAGTTGTACAAATGTTGTTAATTG-A
1 TTAAATGCTGGAAATTGAAG-TGTTTTATCGTTGTAATTGAGTTGTACAAATGTTGTAAATTGAA
* * * *
65752109 GATGTTAAAGTGCTGCAAATTGAAATGTTTAAATACTGTAAATTGAAGTAC
65 G-TGTTAAAGTACTGCAAATTGAAATGTTGAAACACTGCAAATTGAAGTAC
* *
65752160 TTAAATGTTGTAAATTGAAGTGTTTTA
1 TTAAATGCTGGAAATTGAAGTGTTTTA
65752187 AGTACTACAA
Statistics
Matches: 115, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
113 4 0.03
114 86 0.75
115 25 0.22
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (114 bp):
TTAAATGCTGGAAATTGAAGTGTTTTATCGTTGTAATTGAGTTGTACAAATGTTGTAAATTGAAG
TGTTAAAGTACTGCAAATTGAAATGTTGAAACACTGCAAATTGAAGTAC
Found at i:65752223 original size:70 final size:69
Alignment explanation
Indices: 65752093--65752224 Score: 158
Period size: 70 Copynumber: 1.9 Consensus size: 69
65752083 TGAGTTGTAC
* * * *
65752093 AAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAATGTTTAAATACTGTAAATTGAAGT
1 AAATGTTGTAAATTGAGATGTTAAAGTACTACAAATTGAAATGTTTAAATACTGGAAATTGAAGT
65752158 ACTT
66 ACTT
* * ** *
65752162 AAATGTTGTAAATTGA-AGTGTTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTGGAAATTGA
1 AAATGTTGTAAATTGAGA-TG-TTAAAGTACTACAAATTGAAATGTTTAAATACTGGAAATTGA
65752225 GATGTTTCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
68 1 0.02
69 17 0.33
70 34 0.65
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.38
Consensus pattern (69 bp):
AAATGTTGTAAATTGAGATGTTAAAGTACTACAAATTGAAATGTTTAAATACTGGAAATTGAAGT
ACTT
Found at i:65752708 original size:19 final size:19
Alignment explanation
Indices: 65752685--65752731 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
65752675 ATTTAATCTA
*
65752685 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
65752703 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
65752723 ATTTTTATT
1 ATTTTTATT
65752732 TTAATAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:65752733 original size:31 final size:30
Alignment explanation
Indices: 65752652--65752743 Score: 91
Period size: 31 Copynumber: 3.0 Consensus size: 30
65752642 AAAATACTTG
*
65752652 CTATA-TTTTATTTATATCTTTATATTTAAT
1 CTATATTTTTATTTTTAT-TTTATATTTAAT
*
65752682 CTA-ATTTTTATTATTTATTTTAGT-TTTGATT
1 CTATATTTTTATT-TTTATTTTA-TATTT-AAT
*
65752713 CTATATTTTTATTTTTATTTTAATAATTAAT
1 CTATATTTTTATTTTTATTTT-ATATTTAAT
65752744 AACTTGAGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
29 1 0.02
30 17 0.33
31 21 0.41
32 12 0.24
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (30 bp):
CTATATTTTTATTTTTATTTTATATTTAAT
Found at i:65757500 original size:93 final size:93
Alignment explanation
Indices: 65757388--65757559 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
65757378 GCCCATAAGT
* *
65757388 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65757453 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
65757481 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65757546 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
65757560 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:65757555 original size:46 final size:46
Alignment explanation
Indices: 65757380--65757555 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
65757370 TGTAACCCGC
* *
65757380 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
65757426 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
65757472 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
65757519 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
65757556 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:65759972 original size:15 final size:15
Alignment explanation
Indices: 65759924--65760006 Score: 73
Period size: 15 Copynumber: 5.7 Consensus size: 15
65759914 CAAAGATAAC
*
65759924 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
65759938 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
65759953 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
65759968 AAGAAA-TCAGAATA
1 AAGAAACCCAGAATA
* * *
65759982 AAGAGATCCAGGATA
1 AAGAAACCCAGAATA
65759997 AAGAAACCCA
1 AAGAAACCCA
65760007 AGATACGATA
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
14 21 0.38
15 33 0.60
16 1 0.02
ACGTcount: A:0.58, C:0.16, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:65763064 original size:93 final size:93
Alignment explanation
Indices: 65762936--65763109 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
65762926 GCCCATAAGT
* * *
65762936 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65763001 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
65763029 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
65763094 TGAGTTCGGATGCCTA
66 CGAGCTCGGATGCCTA
65763110 AACATCCTAG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:65763103 original size:46 final size:46
Alignment explanation
Indices: 65762928--65763103 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
65762918 TGTAACCCGC
* * *
65762928 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
65762974 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
65763020 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
65763067 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
65763104 TGCCTAAACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:65765031 original size:20 final size:20
Alignment explanation
Indices: 65765003--65765054 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
65764993 AATCAAGTGC
* **
65765003 AAATGATTTTAACCATTTCA
1 AAATCATTTTAACCAAGTCA
* * *
65765023 AAATTATTTCAATCAAGTCA
1 AAATCATTTTAACCAAGTCA
65765043 AAATCATTTTAA
1 AAATCATTTTAA
65765055 AATGATTTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38
Consensus pattern (20 bp):
AAATCATTTTAACCAAGTCA
Found at i:65768550 original size:39 final size:39
Alignment explanation
Indices: 65768436--65768738 Score: 360
Period size: 39 Copynumber: 7.6 Consensus size: 39
65768426 GCTACTCGTT
* *
65768436 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* * * * *
65768476 CGAATGCCTTTGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGAATTAGTAACTCGCA
*
65768516 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
65768555 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* *
65768594 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
65768634 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
65768673 CAAATGCCTTCGGATCTTAGTCTGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
65768714 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
65768739 CATCATTCGA
Statistics
Matches: 228, Mismatches: 27, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
39 112 0.49
40 106 0.46
41 10 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:65768551 original size:79 final size:79
Alignment explanation
Indices: 65768436--65768738 Score: 389
Period size: 79 Copynumber: 3.8 Consensus size: 79
65768426 GCTACTCGTT
* * * * *
65768436 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACGAATGCCTTTGAGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCG-GGCTTAGCCCG
*
65768500 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
65768516 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
65768580 ATTAGTAACTCGCA
66 ATTAGTAACTCGCA
* *
65768594 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
*
65768659 ATTAGTAACTCACA
66 ATTAGTAACTCGCA
* * * * *
65768673 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCC
65768736 GGA
63 GGA
65768739 CATCATTCGA
Statistics
Matches: 198, Mismatches: 20, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
78 40 0.20
79 126 0.64
80 32 0.16
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:65768612 original size:118 final size:118
Alignment explanation
Indices: 65768436--65768738 Score: 448
Period size: 118 Copynumber: 2.6 Consensus size: 118
65768426 GCTACTCGTT
* * * * *
65768436 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACGAATGCCTTTGAGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
65768501 ATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
65 ATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACA
65768555 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
65768619 ATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACA
65 ATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACA
* * * * * *
65768673 CAAATGCCTTCGGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
65768737 GA
64 GA
65768739 CATCATTCGA
Statistics
Matches: 168, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
117 1 0.01
118 109 0.65
119 49 0.29
120 9 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (118 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCACA
Found at i:65773232 original size:24 final size:24
Alignment explanation
Indices: 65773199--65773376 Score: 284
Period size: 24 Copynumber: 7.4 Consensus size: 24
65773189 CTCGAGGCCT
*
65773199 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
65773224 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
65773248 AGCCCTTTTGATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
65773272 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
65773296 AGCCCTTTTGATAGCTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
65773320 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
65773344 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
65773368 AGCCCTTTT
1 AGCCCTTTT
65773377 GCACTTCCTC
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 138 0.97
25 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:65776276 original size:40 final size:40
Alignment explanation
Indices: 65776195--65776450 Score: 333
Period size: 40 Copynumber: 6.4 Consensus size: 40
65776185 AAGCCAAGTA
* * * *
65776195 CCTTCGGGATTTA-ACCGGATATAGCT-ACTAGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
65776233 CCTTCGGGACATAGCCCGGATATCGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65776273 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65776313 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
65776353 CCTTCGAGACTTAGCCCAGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
65776393 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
65776434 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
65776451 AGTTATCATC
Statistics
Matches: 194, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 12 0.06
39 15 0.08
40 141 0.73
41 22 0.11
42 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:65784699 original size:24 final size:24
Alignment explanation
Indices: 65784648--65784815 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
65784638 GCTTTATCAT
*
65784648 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
65784673 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
65784697 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
65784721 ATAACTGGGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
65784745 ATAGCCGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
65784769 CTAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
**
65784793 ATAACTAAGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
65784816 CCACTTCCTC
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
24 113 0.90
25 12 0.10
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:65784890 original size:20 final size:21
Alignment explanation
Indices: 65784865--65784921 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
65784855 TTATGATTAC
*
65784865 ATCATGTGCATTTCATA-CAT
1 ATCATGTGCATATCATATCAT
65784885 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATATCAT
65784906 -TCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
65784922 CCACTTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.63
21 3 0.09
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAT
Found at i:65790372 original size:43 final size:42
Alignment explanation
Indices: 65790270--65790396 Score: 150
Period size: 43 Copynumber: 3.0 Consensus size: 42
65790260 GATCTTACTT
* * * *
65790270 GTAATCACATATCGATGCCACTATCCCGGACAGGGTGTTACAC
1 GTAATCACATATCGATGCCA-TGTCCCAGACATGGTCTTACAC
* *
65790313 G-AATCAAATAT-GATGCCGATGTCCCAGACATGGTCTTAGAC
1 GTAATCACATATCGATGCC-ATGTCCCAGACATGGTCTTACAC
*
65790354 GTAATCACACATCGATGCCAATGTCCCAGACATGGTCTTACAC
1 GTAATCACATATCGATGCC-ATGTCCCAGACATGGTCTTACAC
65790397 AAGAACACAT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 24 0.34
42 18 0.25
43 29 0.41
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (42 bp):
GTAATCACATATCGATGCCATGTCCCAGACATGGTCTTACAC
Found at i:65796055 original size:28 final size:27
Alignment explanation
Indices: 65795992--65796061 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
65795982 ATAGTGAGTC
*
65795992 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
65796019 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
65796047 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65796062 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:65799021 original size:29 final size:28
Alignment explanation
Indices: 65798956--65799035 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 28
65798946 CATACATGCT
* *
65798956 TATGGCCCACTAGGCCCATTCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
* *
65798984 TATGACCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCC-AATCACATTC-A
65799013 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
65799036 TTTTACAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 23 0.52
29 21 0.48
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:65799280 original size:16 final size:17
Alignment explanation
Indices: 65799261--65799297 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
65799251 AACTTTCGGC
65799261 TTTTCGACATTTCAG-T
1 TTTTCGACATTTCAGCT
65799277 TTTTCGACATTTCAGCT
1 TTTTCGACATTTCAGCT
65799294 TTTT
1 TTTT
65799298 GGGATTTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.16, C:0.19, G:0.11, T:0.54
Consensus pattern (17 bp):
TTTTCGACATTTCAGCT
Found at i:65803358 original size:40 final size:40
Alignment explanation
Indices: 65803296--65803473 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
65803286 AAGCCAAGTA
* * * *
65803296 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
65803335 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
65803375 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
65803415 CGTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
65803455 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
65803474 TTATCATCCA
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 13 0.11
40 109 0.89
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:65804747 original size:10 final size:10
Alignment explanation
Indices: 65804732--65804765 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
65804722 ATGAGAGCTT
65804732 TTTTTCTTTC
1 TTTTTCTTTC
65804742 TTTTTCTTTC
1 TTTTTCTTTC
65804752 TCTTTTCTTT-
1 T-TTTTCTTTC
65804762 TTTT
1 TTTT
65804766 CATCATCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.13
10 12 0.52
11 8 0.35
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:65810189 original size:20 final size:20
Alignment explanation
Indices: 65810164--65810222 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
65810154 TAAATATGGT
65810164 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
65810184 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
*
65810204 ATGTATGATATGCATATGA
1 ATGTATGATATGCACATGA
65810223 GGTAATCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:65810300 original size:24 final size:24
Alignment explanation
Indices: 65810273--65810390 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
65810263 GAGGAAGTGA
*
65810273 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
65810297 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
65810320 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
65810344 GAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
65810367 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
65810391 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
23 40 0.47
24 38 0.44
25 8 0.09
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:65810327 original size:23 final size:23
Alignment explanation
Indices: 65810273--65810391 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 23
65810263 GAGGAAGTGA
65810273 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
65810296 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
65810320 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
65810344 GAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
65810367 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
65810391 A
1 A
65810392 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
23 40 0.45
24 41 0.47
25 7 0.08
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:65810342 original size:47 final size:47
Alignment explanation
Indices: 65810273--65810390 Score: 168
Period size: 47 Copynumber: 2.5 Consensus size: 47
65810263 GAGGAAGTGA
65810273 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT-TGCCCCAGTTATT
**
65810320 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTTGCCCCAGTTATT
*
65810367 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
65810391 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
46 11 0.17
47 43 0.66
48 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTTGCCCCAGTTATT
Found at i:65810617 original size:31 final size:31
Alignment explanation
Indices: 65810582--65810645 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
65810572 CGTTTACAGT
65810582 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
65810613 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
65810644 AA
1 AA
65810646 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:65814687 original size:68 final size:70
Alignment explanation
Indices: 65814615--65814812 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
65814605 ACACCCTGTA
* * * *
65814615 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
65814677 ATAAAT
65 ATAAAT
*
65814683 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
65814748 ATAAAT
65 ATAAAT
*
65814754 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
65814813 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:65814726 original size:41 final size:41
Alignment explanation
Indices: 65814681--65814798 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
65814671 TGAAAGATAA
65814681 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
65814722 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65814752 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65814793 ATGTAG
1 ATGTAG
65814799 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:65814738 original size:71 final size:71
Alignment explanation
Indices: 65814649--65814812 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65814639 GAGATGTATC
65814649 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65814714 AGGACA
66 AGGACA
65814720 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65814785 AGGACA
66 AGGACA
65814791 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
65814813 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:65822190 original size:68 final size:70
Alignment explanation
Indices: 65822118--65822315 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
65822108 ACACCCTGTA
* * * *
65822118 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
65822180 ATAAAT
65 ATAAAT
*
65822186 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
65822251 ATAAAT
65 ATAAAT
*
65822257 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
65822316 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:65822229 original size:41 final size:41
Alignment explanation
Indices: 65822184--65822301 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
65822174 TGAAAGATAA
65822184 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
65822225 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65822255 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65822296 ATGTAG
1 ATGTAG
65822302 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:65822241 original size:71 final size:71
Alignment explanation
Indices: 65822152--65822315 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65822142 GAGATGTATC
65822152 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65822217 AGGACA
66 AGGACA
65822223 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65822288 AGGACA
66 AGGACA
65822294 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
65822316 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:65823868 original size:31 final size:31
Alignment explanation
Indices: 65823830--65823892 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
65823820 TCATCATCCG
65823830 AGGTAAGTTTATAAGAAAATAAATGTTGTTA
1 AGGTAAGTTTATAAGAAAATAAATGTTGTTA
65823861 AGGTAAGTTTATAAGAAAATAAATGTTGTTA
1 AGGTAAGTTTATAAGAAAATAAATGTTGTTA
65823892 A
1 A
65823893 CTTTGAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (31 bp):
AGGTAAGTTTATAAGAAAATAAATGTTGTTA
Found at i:65824151 original size:45 final size:45
Alignment explanation
Indices: 65824035--65824143 Score: 173
Period size: 45 Copynumber: 2.4 Consensus size: 45
65824025 GTATTTCTGA
* * *
65824035 GTAAGACCATGTCTGGGACGTTGGCATCGATATATGTGTTTTCGT
1 GTAAGACCATGTCTGGGACGTTGGCATCGATATATATGGTTACGT
* *
65824080 GTAAGACCACGTCTAGGACGTTGGCATCGATATATATGGTTACGT
1 GTAAGACCATGTCTGGGACGTTGGCATCGATATATATGGTTACGT
65824125 GTAAGACCATGTCTGGGAC
1 GTAAGACCATGTCTGGGAC
65824144 ATCGGCATTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (45 bp):
GTAAGACCATGTCTGGGACGTTGGCATCGATATATATGGTTACGT
Found at i:65825680 original size:38 final size:38
Alignment explanation
Indices: 65825637--65825747 Score: 168
Period size: 38 Copynumber: 2.9 Consensus size: 38
65825627 TTGCAAATTA
* *
65825637 ACATGTATAACCGTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
65825675 ACATGTTTAACCGTGGTATATCAACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
65825713 ACACGTATAACTGTGGTATATCCACTTAGCACCAC
1 ACATGTATAACCGTGGTATATCCACTTAGCACCAC
65825748 ATTTTCCCAT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:65828398 original size:15 final size:14
Alignment explanation
Indices: 65828337--65828398 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 14
65828327 AAAAACTAAG
*
65828337 TAAAGAAATTCAAGA
1 TAAAGAAA-CCAAGA
* *
65828352 TAGAGAAACCCAAAA
1 TAAAGAAA-CCAAGA
*
65828367 TAAAGAAATCCAGGA
1 TAAAGAAA-CCAAGA
65828382 TAAAGAAACACAAGA
1 TAAAGAAAC-CAAGA
65828397 TA
1 TA
65828399 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
14 1 0.03
15 36 0.97
ACGTcount: A:0.60, C:0.13, G:0.15, T:0.13
Consensus pattern (14 bp):
TAAAGAAACCAAGA
Found at i:65831333 original size:38 final size:38
Alignment explanation
Indices: 65831290--65831498 Score: 112
Period size: 38 Copynumber: 5.0 Consensus size: 38
65831280 TTTCAAATTA
*
65831290 ACATGTATAACCATGGCATTTCCACTTAGCACCACGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
* * * * *
65831328 ACATGTTTAACCGTTGTATATCCACTTAGCACCATGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
* * *
65831366 AATGAATTGATATATGTAACCGTGGCATATCCACTTAGCACTACGTT
1 -A--CA-TG---TA--TAACCATGGCATATCCACTTAGCACCACGTT
** *
65831413 ACATGTATCAAGATGTGTAATTGTGTTATATCCACTTAGCACCACGTT
1 ACATGTAT--A-A----CCA-TG-G-CATATCCACTTAGCACCACGTT
* * *
65831461 ACACGTATAACCATGGTATATCCACTTACCACCACGTT
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
65831499 TTTCCATTCC
Statistics
Matches: 130, Mismatches: 22, Indels: 38
0.68 0.12 0.20
Matches are distributed among these distances:
38 54 0.42
39 2 0.02
40 5 0.04
41 3 0.02
42 2 0.02
43 2 0.02
44 1 0.01
45 2 0.02
46 4 0.03
47 28 0.22
48 27 0.21
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (38 bp):
ACATGTATAACCATGGCATATCCACTTAGCACCACGTT
Found at i:65835291 original size:32 final size:32
Alignment explanation
Indices: 65835250--65835310 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
65835240 AAAAGATTCG
65835250 AAGATGGTTTGAATGAAGACATTAAACTTTCA
1 AAGATGGTTTGAATGAAGACATTAAACTTTCA
65835282 AAGATGGTTTGAATGAAGACATTAAACTT
1 AAGATGGTTTGAATGAAGACATTAAACTT
65835311 ATTGTTGGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (32 bp):
AAGATGGTTTGAATGAAGACATTAAACTTTCA
Found at i:65838054 original size:47 final size:47
Alignment explanation
Indices: 65837991--65838337 Score: 550
Period size: 47 Copynumber: 7.4 Consensus size: 47
65837981 CCCTTCGGGA
* *
65837991 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
65838038 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65838085 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65838132 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65838179 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65838226 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65838273 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65838320 CTTATCACATATACACAC
1 CTTATCACATATATACAC
65838338 CTTGTACATC
Statistics
Matches: 279, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 279 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:65841387 original size:37 final size:37
Alignment explanation
Indices: 65841328--65841473 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
65841318 AGCTCAGACG
** *
65841328 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
65841365 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
** *
65841402 AAATCTCTGCACGTATTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
65841439 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
65841474 ATATATTTCC
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:65842252 original size:48 final size:48
Alignment explanation
Indices: 65841620--65842240 Score: 981
Period size: 48 Copynumber: 12.9 Consensus size: 48
65841610 GCACAATGCC
* * *
65841620 TACATATTTCACACTAGCCAGTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
65841668 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
65841716 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
65841764 TACATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
65841812 CATATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
65841860 TACATATTTCACATTCGCCATTCGGATTTACCACATATACATATCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
65841908 CATATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
65841956 TACATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
65842004 CATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
65842052 TACATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
65842100 CATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * * *
65842148 TGCATATTTCACATTCGCCATTCGGCTTTACCACGTATACATATCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
65842196 CATATATTTCACATTAGCCATTCGGCTTTACCACATATAAATATC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
65842241 ACACATATAT
Statistics
Matches: 522, Mismatches: 51, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 522 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:65842252 original size:96 final size:96
Alignment explanation
Indices: 65841623--65842240 Score: 1119
Period size: 96 Copynumber: 6.4 Consensus size: 96
65841613 CAATGCCTAC
* * * *
65841623 ATATTTCACACTAGCCAGTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
* * *
65841688 TTCGGCTTTACCACATATACATATCTCATAC
66 TTCGGCTTTACCACATATACATATCACACAT
65841719 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
65841784 TTCGGCTTTACCACATATACATATCACACAT
66 TTCGGCTTTACCACATATACATATCACACAT
*
65841815 ATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
*
65841880 TTCGGATTTACCACATATACATATCACACAT
66 TTCGGCTTTACCACATATACATATCACACAT
*
65841911 ATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
65841976 TTCGGCTTTACCACATATACATATCACACAT
66 TTCGGCTTTACCACATATACATATCACACAT
65842007 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
65842072 TTCGGCTTTACCACATATACATATCACACAT
66 TTCGGCTTTACCACATATACATATCACACAT
*
65842103 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCATATTTCACATTCGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
*
65842168 TTCGGCTTTACCACGTATACATATCACACAT
66 TTCGGCTTTACCACATATACATATCACACAT
*
65842199 ATATTTCACATTAGCCATTCGGCTTTACCACATATAAATATC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
65842241 ACACATATAT
Statistics
Matches: 506, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 506 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (96 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCA
TTCGGCTTTACCACATATACATATCACACAT
Found at i:65846254 original size:40 final size:40
Alignment explanation
Indices: 65846199--65846509 Score: 491
Period size: 40 Copynumber: 7.8 Consensus size: 40
65846189 ATTTTGTCCA
* *
65846199 AGCACGAATGC-CTTCGGGGCTTACCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* * * *
65846238 AGTACGAGTGCTCTTCGGGACTTAGCCCAGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
65846278 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* *
65846318 AGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
65846358 AGCACGAATGCTCTT-GGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
* ** *
65846397 AGCACGAATGCTCTTCGGAACTTAGCCTAGATATATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
65846437 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
*
65846477 AGCACGAATGCTCTTCGGGACTTAGCCCTGATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
65846510 TAACATACTG
Statistics
Matches: 247, Mismatches: 23, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 46 0.19
40 201 0.81
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACC
Found at i:65846488 original size:159 final size:159
Alignment explanation
Indices: 65846199--65846511 Score: 538
Period size: 159 Copynumber: 2.0 Consensus size: 159
65846189 ATTTTGTCCA
* * * *
65846199 AGCACGAATGCCTTCGGGGCTTACCCCGGATACATCACCAGTACGAGTGCTCTTCGGGACTTAGC
1 AGCACGAATGCCTTCGGGACTTACCCCGGATACATCACCAGCACGAATGCTCTTCGGAACTTAGC
65846264 CCAGATATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGC
66 CCAGATATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGC
65846329 TCTTCGGAACTTAGCCCGGATATATCACC
131 TCTTCGGAACTTAGCCCGGATATATCACC
*
65846358 AGCACGAATGCTCTT-GGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGAACTTAG
1 AGCACGAATGC-CTTCGGGACTTACCCCGGATACATCACCAGCACGAATGCTCTTCGGAACTTAG
*
65846422 CCTAGATATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
65 CCCAGATATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
* *
65846487 CTCTTCGGGACTTAGCCCTGATATA
130 CTCTTCGGAACTTAGCCCGGATATA
65846512 ACATACTGAA
Statistics
Matches: 145, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
159 142 0.98
160 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (159 bp):
AGCACGAATGCCTTCGGGACTTACCCCGGATACATCACCAGCACGAATGCTCTTCGGAACTTAGC
CCAGATATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGC
TCTTCGGAACTTAGCCCGGATATATCACC
Found at i:65848425 original size:47 final size:47
Alignment explanation
Indices: 65848362--65848942 Score: 930
Period size: 47 Copynumber: 12.4 Consensus size: 47
65848352 CCCTTCGGGA
* * *
65848362 CTTATCATATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
65848409 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65848456 CTTATCTCATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65848503 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65848550 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65848597 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65848644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65848691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65848738 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65848785 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65848832 CTTATCACATATATACACTTTCACATTCATCACATT-GCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
65848878 CTTATCACATATATACACATTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65848925 CTTATCACATATACACAC
1 CTTATCACATATATACAC
65848943 CTTGTACATC
Statistics
Matches: 501, Mismatches: 32, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 43 0.09
47 458 0.91
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:65860510 original size:28 final size:28
Alignment explanation
Indices: 65860477--65860579 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
65860467 ATTGCATGAC
* *
65860477 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
*
65860505 TATGAA-AGTGATTGGGCTTGATGGGCCA
1 TATGAATA-TGATTGGGCCTGATGGGCCA
**
65860533 TATGAATATGATTGGGCCCAATGGGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
*
65860561 TATGAATAAGATTGGGCCT
1 TATGAATATGATTGGGCCT
65860580 AAAGGGGCAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
28 64 0.98
29 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
TATGAATATGATTGGGCCTGATGGGCCA
Found at i:65860596 original size:29 final size:28
Alignment explanation
Indices: 65860534--65860599 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
65860524 GATGGGCCAT
* * * * *
65860534 ATGAATATGATTGGGCCCAATGGGCCAT
1 ATGAATAAGATTGGGCCAAAGGGGCAAA
65860562 ATGAATAAGATTGGGCCTAAAGGGGCAAA
1 ATGAATAAGATTGGGCC-AAAGGGGCAAA
65860591 ATGAATAAG
1 ATGAATAAG
65860600 TATGGATCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 16 0.50
29 16 0.50
ACGTcount: A:0.38, C:0.12, G:0.29, T:0.21
Consensus pattern (28 bp):
ATGAATAAGATTGGGCCAAAGGGGCAAA
Found at i:65862169 original size:24 final size:24
Alignment explanation
Indices: 65862142--65862372 Score: 354
Period size: 24 Copynumber: 9.6 Consensus size: 24
65862132 CTTATTATGT
* * *
65862142 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
65862166 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
65862190 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
65862214 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
65862238 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
65862262 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
65862286 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
65862310 TTGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
65862334 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
65862358 TCGCACACATAGTGC
1 TCGCACACATAGTGC
65862373 ATTTGAGATA
Statistics
Matches: 195, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 195 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:65869919 original size:24 final size:24
Alignment explanation
Indices: 65869892--65870122 Score: 363
Period size: 24 Copynumber: 9.6 Consensus size: 24
65869882 CTTATTATGT
* * *
65869892 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
65869916 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
65869940 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
65869964 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
65869988 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
65870012 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
65870036 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
65870060 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
65870084 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
65870108 TCGCACACATAGTGC
1 TCGCACACATAGTGC
65870123 ATTTGAGATA
Statistics
Matches: 197, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 197 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:65873694 original size:2 final size:2
Alignment explanation
Indices: 65873687--65873713 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65873677 GAGTGATGTT
65873687 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
65873714 TTGATATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65874048 original size:36 final size:36
Alignment explanation
Indices: 65873941--65874050 Score: 193
Period size: 36 Copynumber: 3.1 Consensus size: 36
65873931 AATATTATGA
*
65873941 ATGTTGGTATTCGACAATTAGCATGGAAATTTGATA
1 ATGTTGGTATTCGACAATTAGCATGGAAATTTGATT
65873977 ATGTTGGTATTCGACAATTAGCATGGAAATTTGATT
1 ATGTTGGTATTCGACAATTAGCATGGAAATTTGATT
* *
65874013 ATGTTGGTATTCGACAATCAGCATTGAAATTTGATT
1 ATGTTGGTATTCGACAATTAGCATGGAAATTTGATT
65874049 AT
1 AT
65874051 TATTTTTCAG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 71 1.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (36 bp):
ATGTTGGTATTCGACAATTAGCATGGAAATTTGATT
Found at i:65875443 original size:19 final size:19
Alignment explanation
Indices: 65875419--65875456 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
65875409 AAAACTTGAA
*
65875419 ACAAATAGGAATGATTTTC
1 ACAAATAGAAATGATTTTC
65875438 ACAAATAGAAATGATTTTC
1 ACAAATAGAAATGATTTTC
65875457 TTCTCTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (19 bp):
ACAAATAGAAATGATTTTC
Found at i:65885586 original size:28 final size:28
Alignment explanation
Indices: 65885550--65885650 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 28
65885540 ATTGCATGAC
65885550 TATGAATGTGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTGGGGCCGATGGGCCA
* * *
65885578 TATTAATGTGATTGGGGCTGATGGGTCA
1 TATGAATGTGATTGGGGCCGATGGGCCA
* ** *
65885606 TATGAAAGTGATTGGGGCTTAATAGGCCA
1 TATGAATGTGATTGGGGC-CGATGGGCCA
* *
65885635 TATGTATGAGATTGGG
1 TATGAATGTGATTGGG
65885651 CCTAAAGGGG
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 41 0.67
29 20 0.33
ACGTcount: A:0.25, C:0.09, G:0.36, T:0.31
Consensus pattern (28 bp):
TATGAATGTGATTGGGGCCGATGGGCCA
Found at i:65890065 original size:40 final size:40
Alignment explanation
Indices: 65890014--65890157 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 40
65890004 TGATATCCAA
* * * *
65890014 GCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGG
1 GCTAAGACCCGAAGGCAATTGTGCAAGTTATTATATCCGG
* *
65890054 GCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGG
1 GCTAAGACCCGAAGGCAATT-GTGCAAGTTATTATATCCGG
* * ** *
65890094 GCTAAGATCCGAAGGCATTTGTGCAAGTTACCAAATCCGG
1 GCTAAGACCCGAAGGCAATTGTGCAAGTTATTATATCCGG
* *
65890134 GTTAAGACCCGAAGGCAATCGTGC
1 GCTAAGACCCGAAGGCAATTGTGC
65890158 GAATCACTAT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.03
40 81 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCAATTGTGCAAGTTATTATATCCGG
Found at i:65890174 original size:40 final size:40
Alignment explanation
Indices: 65890045--65890213 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
65890035 TGCTAGTAAT
* * ***
65890045 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCAC
* * * *
65890085 TATATCCGGGCTAAGATCCGAAGGCATTTGTGC-AAGTTAC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCAC
* * *
65890125 CAAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCAC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCAC
* * * ** * * *
65890165 TATAACCGGGCTAGGTCCCGAAGATAATCGAGCGAGTCGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCAC
65890205 TATATCCGG
1 TATATCCGG
65890214 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 100 0.97
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCAC
Found at i:65893428 original size:28 final size:28
Alignment explanation
Indices: 65893396--65893467 Score: 126
Period size: 28 Copynumber: 2.6 Consensus size: 28
65893386 ATTGTATGAT
65893396 TATGAATGTGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTGGGGCCGATGGGCCA
65893424 TATGAATGTGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTGGGGCCGATGGGCCA
* *
65893452 CATGAATGAGATTGGG
1 TATGAATGTGATTGGG
65893468 CCTAAAGGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.24, C:0.12, G:0.39, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGGCCGATGGGCCA
Found at i:65894917 original size:39 final size:40
Alignment explanation
Indices: 65894860--65895036 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
65894850 AAGCCAAGTA
* * *
65894860 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
65894899 CCTTC-GGACATAGCCCGGATATAGTAACTCACACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
65894938 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
65894978 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
*
65895018 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
65895037 TTATCATCCA
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
38 6 0.05
39 32 0.26
40 84 0.69
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:65900666 original size:12 final size:12
Alignment explanation
Indices: 65900649--65900675 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
65900639 GTATGTTCAA
65900649 ATTGTGTACTAT
1 ATTGTGTACTAT
65900661 ATTGTGTACTAT
1 ATTGTGTACTAT
65900673 ATT
1 ATT
65900676 TGAAAATGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (12 bp):
ATTGTGTACTAT
Found at i:65907249 original size:47 final size:47
Alignment explanation
Indices: 65907186--65907625 Score: 729
Period size: 47 Copynumber: 9.4 Consensus size: 47
65907176 CCCTTCGGGA
* *
65907186 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65907233 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65907280 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65907327 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65907374 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
65907421 CTTATCACATATAGACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
65907468 CTTATCACATATAGACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65907515 CTTATCACATATACACACTTTCACATTCATCAC-TTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65907561 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65907608 CTTATCACATATACACAC
1 CTTATCACATATATACAC
65907626 CTTGTACATC
Statistics
Matches: 373, Mismatches: 19, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 43 0.12
47 330 0.88
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:65907336 original size:22 final size:22
Alignment explanation
Indices: 65907308--65907430 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
65907298 TTTCACATTC
65907308 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
65907330 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
65907354 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
65907377 ATCACATAT-ACACACTTTC-ACATT
1 ATCACAT-TGGC-CA--TTCGGCCTT
65907401 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
65907424 ATCACAT
1 ATCACAT
65907431 ATAGACACTT
Statistics
Matches: 71, Mismatches: 18, Indels: 24
0.63 0.16 0.21
Matches are distributed among these distances:
22 28 0.39
23 11 0.15
24 11 0.15
25 21 0.30
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:65907477 original size:22 final size:22
Alignment explanation
Indices: 65907449--65907524 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
65907439 TTTCACATTC
65907449 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
** * *** *
65907471 ATCACATATAGACACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCCTT
65907495 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
65907518 ATCACAT
1 ATCACAT
65907525 ATACACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:65912947 original size:37 final size:37
Alignment explanation
Indices: 65912897--65912987 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
65912887 TTATTACGAA
65912897 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
65912934 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
65912971 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
65912988 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:65913085 original size:48 final size:48
Alignment explanation
Indices: 65913027--65913178 Score: 268
Period size: 48 Copynumber: 3.2 Consensus size: 48
65913017 TGTTACAACA
* *
65913027 TTCACATTAGCCATTCGGCTTTACCACACATACTTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
65913075 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
65913123 TTCACATTAGCCCTTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
65913171 TTCACATT
1 TTCACATT
65913179 CATCACATCG
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 100 1.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:65913232 original size:49 final size:49
Alignment explanation
Indices: 65913170--65913650 Score: 862
Period size: 49 Copynumber: 9.9 Consensus size: 49
65913160 CACACATATA
*
65913170 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
65913219 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
65913266 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
65913315 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
65913362 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
65913411 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
65913460 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
65913509 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
65913558 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
65913607 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
65913651 CATCTCATAC
Statistics
Matches: 416, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 89 0.21
49 327 0.79
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:65930439 original size:336 final size:335
Alignment explanation
Indices: 65929824--65930500 Score: 1275
Period size: 336 Copynumber: 2.0 Consensus size: 335
65929814 TTATTCTGTA
65929824 GAATGGCTGAGCAAACTGCATTCAACTCCACATGCTACAACTCATCCAACTTTTGTTTATTTGTT
1 GAATGGCTGAGCAAACTGCATTCAACTCCACATGCTACAACTCATCCAACTTTTGTTTATTTGTT
*
65929889 AAAAACTCCTTTAAGAATTTGACTGCGTTTGGCATCTGCGAAAGAGCTTCAATAAACGGTAAGTT
66 AAAAACTCCTTTAAGAATTTGACTGCGTTTGGCATCTGCGAAAGAGCTTCAATAAACAGTAAGTT
*
65929954 AATATGTAATTTTTTAATAATTTAAGGAATTTACTGAATTGTTCTTCTGTGTGGTCTTTCCTTGT
131 AATATGTAATTTTTTAATAATTTAAGGAATTTACTGAATTGTTCTTCTGTGTAGTCTTTCCTTGT
*
65930019 CGTGTCTGGGTACGGCACACAAGGTTTTTATTCTTTACTTACCAGTTTCTGGTCATTGTGGTCCA
196 CGCGTCTGGGTACGGCACACAAGGTTTTTATTCTTTACTTACCAGTTTCTGGTCATTGTGGTCCA
65930084 CCTCACTCTTACCTTTACTTACCCCAGTTTCTTGCCTCGGTTCTGGTTCAGGTGCAAATAACACT
261 CCTCACTCTTACCTTTACTTACCCCAGTTTCTTGCCTCGGTTCTGGTTCAGGTGCAAATAACACT
65930149 TCCGCATCTT
326 TCCGCATCTT
**
65930159 GAATGGCTGAGCAAACTGCATTCAACTCCACATGCTACGCCTCATCCAACTTTCT-TTTATTTGT
1 GAATGGCTGAGCAAACTGCATTCAACTCCACATGCTACAACTCATCCAACTTT-TGTTTATTTGT
*
65930223 TAAAAACTCCTTTAAGAATTTGATTGCGTTTGGCATCTGCGAAAGAGCTTCAATAAACAGTAAGT
65 TAAAAACTCCTTTAAGAATTTGACTGCGTTTGGCATCTGCGAAAGAGCTTCAATAAACAGTAAGT
65930288 TAATATGTAATTTTTTTAATAATTTAAGGAATTTACTGAATTGTTCTTCTGTGTAGTCTTTCCTT
130 TAATATGTAA-TTTTTTAATAATTTAAGGAATTTACTGAATTGTTCTTCTGTGTAGTCTTTCCTT
65930353 GTCGCGTCTGGGTACGGCACACAAGGTTTTTATTCTTTACTTACCAGTTTCTGGTCATTGTGGTC
194 GTCGCGTCTGGGTACGGCACACAAGGTTTTTATTCTTTACTTACCAGTTTCTGGTCATTGTGGTC
65930418 CACCTCACTCTTACCTTTACTTACCCCAGTTTCTTGCCTCGGTTCTGGTTCAGGTGCAAATAACA
259 CACCTCACTCTTACCTTTACTTACCCCAGTTTCTTGCCTCGGTTCTGGTTCAGGTGCAAATAACA
65930483 CTTCCGCATCTT
324 CTTCCGCATCTT
65930495 GAATGG
1 GAATGG
65930501 TAATTGCATT
Statistics
Matches: 334, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
335 133 0.40
336 201 0.60
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (335 bp):
GAATGGCTGAGCAAACTGCATTCAACTCCACATGCTACAACTCATCCAACTTTTGTTTATTTGTT
AAAAACTCCTTTAAGAATTTGACTGCGTTTGGCATCTGCGAAAGAGCTTCAATAAACAGTAAGTT
AATATGTAATTTTTTAATAATTTAAGGAATTTACTGAATTGTTCTTCTGTGTAGTCTTTCCTTGT
CGCGTCTGGGTACGGCACACAAGGTTTTTATTCTTTACTTACCAGTTTCTGGTCATTGTGGTCCA
CCTCACTCTTACCTTTACTTACCCCAGTTTCTTGCCTCGGTTCTGGTTCAGGTGCAAATAACACT
TCCGCATCTT
Found at i:65933223 original size:13 final size:13
Alignment explanation
Indices: 65933219--65933263 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
65933209 TGGCACGCTT
65933219 GTGTGACACGCCC
1 GTGTGACACGCCC
* *
65933232 ATGTGACACGCTC
1 GTGTGACACGCCC
*
65933245 GTGTGACACGCCT
1 GTGTGACACGCCC
65933258 GTGTGA
1 GTGTGA
65933264 GGAAGTCCTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (13 bp):
GTGTGACACGCCC
Found at i:65933262 original size:26 final size:26
Alignment explanation
Indices: 65933197--65933263 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
65933187 CTGCCAAATG
* * *
65933197 GACACGGCTATGTGGCACGCTTGTGT
1 GACACGCCTATGTGACACGCTCGTGT
*
65933223 GACACGCCCATGTGACACGCTCGTGT
1 GACACGCCTATGTGACACGCTCGTGT
*
65933249 GACACGCCTGTGTGA
1 GACACGCCTATGTGA
65933264 GGAAGTCCTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (26 bp):
GACACGCCTATGTGACACGCTCGTGT
Found at i:65936269 original size:29 final size:29
Alignment explanation
Indices: 65936237--65936432 Score: 206
Period size: 29 Copynumber: 6.9 Consensus size: 29
65936227 AATCTCATTT
65936237 ATATGGCCCATTCGGCCCAATTCACGTTC
1 ATATGGCCCATTCGGCCCAATTCACGTTC
* * *
65936266 ATATGACCCATTAGGCCCAATTCACATTC
1 ATATGGCCCATTCGGCCCAATTCACGTTC
* * *
65936295 ATATGGCCCATTAGGCCCAATCTTA--TTT
1 ATATGGCCCATTCGGCCCAAT-TCACGTTC
* *
65936323 ATATGGCCCATCCAGCCCAATTCACGTTC
1 ATATGGCCCATTCGGCCCAATTCACGTTC
65936352 ATATGGCCCA-TCAGGCCCAATTCACGTTC
1 ATATGGCCCATTC-GGCCCAATTCACGTTC
* *
65936381 ATATGGCCCA-TAGGCCCAATCTCA--TTT
1 ATATGGCCCATTCGGCCCAAT-TCACGTTC
* * *
65936408 ATGTGGCCCATCCGGCCCAAATCAC
1 ATATGGCCCATTCGGCCCAATTCAC
65936433 ATTATATTCA
Statistics
Matches: 141, Mismatches: 19, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
27 16 0.11
28 36 0.26
29 87 0.62
30 2 0.01
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTCGGCCCAATTCACGTTC
Found at i:65936346 original size:57 final size:57
Alignment explanation
Indices: 65936232--65936432 Score: 203
Period size: 57 Copynumber: 3.5 Consensus size: 57
65936222 GACCAAATCT
* * *
65936232 CATTTATATGGCCCATTCGGCCCAATTCACGTTCATATGACCCATTAGGCCCAATTCA
1 CATTCATATGGCCCATTAGGCCCAATTCAC-TTCATATGACCCATCAGGCCCAATTCA
* * *
65936290 CATTCATATGGCCCATTAGGCCCAATCTTA-TTTATATGGCCCATCCA-GCCCAATTCA
1 CATTCATATGGCCCATTAGGCCCAAT-TCACTTCATATGACCCAT-CAGGCCCAATTCA
* * * *
65936347 CGTTCATATGGCCCATCAGGCCCAATTCACGTTCATATGGCCCAT-AGGCCCAA-TCT
1 CATTCATATGGCCCATTAGGCCCAATTCAC-TTCATATGACCCATCAGGCCCAATTCA
* * ** *
65936403 CATTTATGTGGCCCATCCGGCCCAAATCAC
1 CATTCATATGGCCCATTAGGCCCAATTCAC
65936433 ATTATATTCA
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
56 30 0.25
57 52 0.43
58 38 0.31
59 2 0.02
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (57 bp):
CATTCATATGGCCCATTAGGCCCAATTCACTTCATATGACCCATCAGGCCCAATTCA
Found at i:65936353 original size:86 final size:85
Alignment explanation
Indices: 65936203--65936432 Score: 334
Period size: 86 Copynumber: 2.7 Consensus size: 85
65936193 ACCGCTACAT
* * * * *
65936203 ACATGCATATGGCGCACTAGACCAAATCTCATTTATATGGCCCATTCGGCCCAATTCACGTTCAT
1 ACATTCATATGGCCCA-TAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCAT
*
65936268 ATGACCCATTAGGCCCAATTC
65 ATGACCCATCAGGCCCAATTC
* *
65936289 ACATTCATATGGCCCATTAGGCCCAATCTTATTTATATGGCCCATCCAGCCCAATTCACGTTCAT
1 ACATTCATATGGCCCA-TAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCAT
*
65936354 ATGGCCCATCAGGCCCAATTC
65 ATGACCCATCAGGCCCAATTC
* * *
65936375 ACGTTCATATGGCCCATAGGCCCAATCTCATTTATGTGGCCCATCCGGCCCAAATCAC
1 ACATTCATATGGCCCATAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCAC
65936433 ATTATATTCA
Statistics
Matches: 129, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 38 0.29
86 91 0.71
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (85 bp):
ACATTCATATGGCCCATAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCATA
TGACCCATCAGGCCCAATTC
Found at i:65940913 original size:29 final size:29
Alignment explanation
Indices: 65940847--65941030 Score: 178
Period size: 29 Copynumber: 6.4 Consensus size: 29
65940837 TACATACATG
*
65940847 CATATGGCCCA-CTAGACCCAATCTCA--TT
1 CATATGGCCCATC-AGGCCCAAT-TCACGTT
* *
65940875 TATATGGCCCATCCGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCACGTT
65940904 CATATGGCCCATCAGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCACGTT
* ***
65940933 CATATGGCCCATTAGGCCCAA-TCGTATT
1 CATATGGCCCATCAGGCCCAATTCACGTT
* * * * * *
65940961 TATTTGACCCATCCGACACAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCACGTT
**
65940990 CATATGGCCCATCAGGCCCAATTCATATT
1 CATATGGCCCATCAGGCCCAATTCACGTT
*
65941019 CATATGACCCAT
1 CATATGGCCCAT
65941031 TAGCTTAATC
Statistics
Matches: 124, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
27 3 0.02
28 35 0.28
29 86 0.69
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATCAGGCCCAATTCACGTT
Found at i:65940924 original size:57 final size:57
Alignment explanation
Indices: 65940842--65941078 Score: 189
Period size: 57 Copynumber: 4.2 Consensus size: 57
65940832 ACCGCTACAT
* * * *
65940842 ACATGCATATGGCCCA-CTAGACCCAATCTCA-TTTATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGACCCATC-AGACCCAAT-TCACTTCATATGGCCCATCAGGCCCAATTC
* * * *
65940899 ACGTTCATATGGCCCATCAGGCCCAATTCACGTTCATATGGCCCATTAGGCCCAA-TC
1 ACATTCATATGACCCATCAGACCCAATTCAC-TTCATATGGCCCATCAGGCCCAATTC
** * * * *
65940956 GTATTTATTTGACCCATCCGACACAATTCACGTTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGACCCATCAGACCCAATTCAC-TTCATATGGCCCATCAGGCCCAATTC
* * ** * * * *
65941014 ATATTCATATGACCCATTAG-CTTAATCTCA-TTTATATGGCCTATCCGGCCCAAATC
1 ACATTCATATGACCCATCAGACCCAAT-TCACTTCATATGGCCCATCAGGCCCAATTC
65941070 ACATT-ATAT
1 ACATTCATAT
65941079 TCATGCTCAC
Statistics
Matches: 147, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
55 4 0.03
56 29 0.20
57 73 0.50
58 41 0.28
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.29
Consensus pattern (57 bp):
ACATTCATATGACCCATCAGACCCAATTCACTTCATATGGCCCATCAGGCCCAATTC
Found at i:65940992 original size:86 final size:86
Alignment explanation
Indices: 65940842--65941060 Score: 289
Period size: 86 Copynumber: 2.6 Consensus size: 86
65940832 ACCGCTACAT
* * * * *
65940842 ACATGCATATGGCCCACTAGACCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCAT
1 ACATTCATATGGCCCATTAGACCCAATCTCATTTATATGACCCATCCGACACAATTCACGTTCAT
65940907 ATGGCCCATCAGGCCCAATTC
66 ATGGCCCATCAGGCCCAATTC
* * *
65940928 ACGTTCATATGGCCCATTAGGCCCAATCGT-ATTTATTTGACCCATCCGACACAATTCACGTTCA
1 ACATTCATATGGCCCATTAGACCCAATC-TCATTTATATGACCCATCCGACACAATTCACGTTCA
65940992 TATGGCCCATCAGGCCCAATTC
65 TATGGCCCATCAGGCCCAATTC
* * ** * *
65941014 ATATTCATATGACCCATTAG-CTTAATCTCATTTATATGGCCTATCCG
1 ACATTCATATGGCCCATTAGACCCAATCTCATTTATATGACCCATCCG
65941061 GCCCAAATCA
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
84 1 0.01
85 20 0.17
86 93 0.81
87 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (86 bp):
ACATTCATATGGCCCATTAGACCCAATCTCATTTATATGACCCATCCGACACAATTCACGTTCAT
ATGGCCCATCAGGCCCAATTC
Found at i:65951229 original size:39 final size:39
Alignment explanation
Indices: 65951134--65951300 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 39
65951124 AATTGATATG
* * * * **
65951134 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGTT
* * *
65951174 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTT
*
65951213 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGT-GTT
*
65951253 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTG-TT
65951293 ATATCCGG
1 ATATCCGG
65951301 TTATATTCCG
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 71 0.66
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTT
Found at i:65958243 original size:17 final size:18
Alignment explanation
Indices: 65958201--65958249 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65958191 AGTTGAAAAG
65958201 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65958220 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65958237 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65958250 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65959138 original size:40 final size:40
Alignment explanation
Indices: 65959072--65959238 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
65959062 AAATTGAATG
* * *
65959072 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
65959111 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
65959151 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65959191 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65959231 ATATCCGG
1 ATATCCGG
65959239 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65962057 original size:29 final size:28
Alignment explanation
Indices: 65962018--65962072 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
65962008 GTGAGATATA
65962018 CTGATTTGGCTTCGGGCCATGCATATCGG
1 CTGATTTGGCTTCGGGCCATG-ATATCGG
*
65962047 CTGATTTGGCTTTGGGCCATGATATC
1 CTGATTTGGCTTCGGGCCATGATATC
65962073 AGAATTTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.15, C:0.22, G:0.29, T:0.35
Consensus pattern (28 bp):
CTGATTTGGCTTCGGGCCATGATATCGG
Found at i:65969050 original size:2 final size:2
Alignment explanation
Indices: 65969043--65969074 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
65969033 GCTCTTGCAC
65969043 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65969075 TTGCGCATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65970673 original size:47 final size:47
Alignment explanation
Indices: 65970619--65970765 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 47
65970609 TTAGGATTTT
** * * *
65970619 ATGTGATGAATGTGAATGTGCCTATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
65970666 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
65970713 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65970760 ATGTGA
1 ATGTGA
65970766 AATATGTATG
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:65970798 original size:48 final size:48
Alignment explanation
Indices: 65970735--65970920 Score: 302
Period size: 48 Copynumber: 3.8 Consensus size: 48
65970725 TGAACATGCA
65970735 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
65970783 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
65970831 CATATGTGGTAAAGCCGAATGG-TAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATG
*
65970882 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
65970921 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
47 7 0.05
48 75 0.59
49 2 0.02
50 2 0.02
51 36 0.28
52 6 0.05
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Done.