Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 220 of 328
Found at i:65970899 original size:99 final size:96
Alignment explanation
Indices: 65970736--65970920 Score: 309
Period size: 99 Copynumber: 1.9 Consensus size: 96
65970726 GAACATGCAT
*
65970736 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
65970801 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
65970832 ATATGTGGTAAAGCCGAATGG-TAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAG
1 ATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATATATGAGATATGTATATGTGGTAAAG
*
65970896 CCGAATGGCTAGTGTGAAATATGTA
62 CCGAATGGCTAATGTGAAATATGTA
65970921 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
95 7 0.08
96 21 0.25
97 1 0.01
98 1 0.01
99 53 0.64
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:65970979 original size:99 final size:98
Alignment explanation
Indices: 65970767--65970960 Score: 255
Period size: 99 Copynumber: 2.0 Consensus size: 98
65970757 CTAATGTGAA
* *
65970767 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGC
* * **
65970832 ATATGTGGTAAAGCCGAATGGTAATGTGAAATAT
66 ATATATGGT-AAGCCGAACGCCAATGTGAAATAT
* * *
65970866 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGC
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGC
* * *
65970931 GTATATTGT-GGCCGAACGACCAATGTGAAA
66 ATATATGGTAAGCCGAACG-CCAATGTGAAA
65970961 GGTGTGTATT
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
97 7 0.09
98 9 0.11
99 66 0.80
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (98 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGC
ATATATGGTAAGCCGAACGCCAATGTGAAATAT
Found at i:65971174 original size:37 final size:37
Alignment explanation
Indices: 65971066--65971174 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
65971056 GGAAATATAT
*
65971066 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65971103 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
65971140 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65971175 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65972495 original size:40 final size:40
Alignment explanation
Indices: 65972441--65972752 Score: 507
Period size: 40 Copynumber: 7.8 Consensus size: 40
65972431 GAGAATTGAG
* *
65972441 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65972481 AGTGATGTATCCGGGCTAAGTCCCGAAGAGTATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65972521 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
65972561 AGTGATATATCCGGGCTAAGTCCCGAAGAGTATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
65972601 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65972641 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65972681 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
65972721 AGTGATGTATCCGGACTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
65972753 ATCATGCTGG
Statistics
Matches: 250, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 250 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65974392 original size:21 final size:21
Alignment explanation
Indices: 65974351--65974392 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
65974341 AAGAAAGGAA
* **
65974351 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
65974372 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
65974393 GGGGGTTATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:65975172 original size:2 final size:2
Alignment explanation
Indices: 65975165--65975196 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
65975155 GCTCCTGCAC
65975165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65975197 TTGCGCATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65976798 original size:47 final size:47
Alignment explanation
Indices: 65976741--65976887 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 47
65976731 TTAGGATTTT
** * *
65976741 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
65976788 ATGTGTTGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
65976835 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65976882 ATGTGA
1 ATGTGA
65976888 AATATGTATG
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:65977014 original size:52 final size:48
Alignment explanation
Indices: 65976857--65977043 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
65976847 TGAACATGCA
65976857 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
65976905 TATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
65976953 AATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
* *
65977005 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
65977044 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 1 0.01
50 2 0.02
51 1 0.01
52 40 0.32
53 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:65977029 original size:100 final size:96
Alignment explanation
Indices: 65976858--65977043 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 96
65976848 GAACATGCAT
* * *
65976858 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
65976923 ATGGCTAATGTGAAATATGTATGAGATATGA
66 ATGGCTAATGTGAAATATGTATGAGATATGA
65976954 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGATATGTATATGTGGTAAA
*
65977018 GCCAAATGGCTAGTGTGAAATATGTA
61 GCCAAATGGCTAATGTGAAATATGTA
65977044 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
98 1 0.01
99 1 0.01
100 51 0.63
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGA
Found at i:65980855 original size:29 final size:29
Alignment explanation
Indices: 65980822--65980904 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
65980812 GTGACGAGAT
*
65980822 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65980851 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
65980880 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
65980905 AAAAATACGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:65984171 original size:43 final size:43
Alignment explanation
Indices: 65984067--65984180 Score: 99
Period size: 43 Copynumber: 2.7 Consensus size: 43
65984057 TATCGCAGTT
* *
65984067 ATGGTCTTACATGTTATCACATATCGATGCCACTATCCCGAAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATATCCCGAAC
* * * * *
65984110 AAGGTCTTATACGAAATCA-ATTAAT-GATGCCAATGTCCC-AGAC
1 ATGGTCTTACATGTAATCACA-T-ATCGATGCCAATATCCCGA-AC
* *
65984153 ATGGTCTTACATGTAATCAGATCTCGAT
1 ATGGTCTTACATGTAATCACATATCGAT
65984181 AACCTAATGT
Statistics
Matches: 54, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
42 3 0.06
43 48 0.89
44 3 0.06
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATATCCCGAAC
Found at i:65991751 original size:43 final size:42
Alignment explanation
Indices: 65991699--65991810 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
65991689 AAAAATCGAG
* * * *
65991699 GCCACTGTCCCAGACAGGGTCTTACACGAAATCGATTAAT-GAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATC--TCAATAAAT
* *
65991742 GCCAATGTCCCAGACATGGTTTTACACGTAATCTCAATACAAT
1 GCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATA-AAT
65991785 GCCAATGTCCCAGACATGGTCTTACA
1 GCCAATGTCCCAGACATGGTCTTACA
65991811 TGTAACCATA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
41 4 0.07
43 56 0.93
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
GCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATAAAT
Found at i:65993633 original size:24 final size:24
Alignment explanation
Indices: 65993601--65993772 Score: 265
Period size: 24 Copynumber: 7.2 Consensus size: 24
65993591 GCCTAGCCTT
* *
65993601 TTTTAATAACTGGGGCAAAATCCC
1 TTTTAATAACTGGGGCATAAGCCC
65993625 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
* *
65993649 TTTTGATAATTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
65993673 TTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
65993697 TTTTAAT-ACTTGGGGCATAAGCCC
1 TTTTAATAAC-TGGGGCATAAGCCC
* *
65993721 TTTTGATAACTTGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
65993745 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
65993769 TTTT
1 TTTT
65993773 GCACTTCCTC
Statistics
Matches: 136, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
23 2 0.01
24 132 0.97
25 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:65993850 original size:20 final size:20
Alignment explanation
Indices: 65993825--65993888 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
65993815 TGAATACATT
65993825 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
65993845 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
*
65993865 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATATC
65993885 ATGT
1 ATGT
65993889 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:65993855 original size:11 final size:11
Alignment explanation
Indices: 65993825--65993877 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
65993815 TGAATACATT
65993825 ATGTGCATATC
1 ATGTGCATATC
*
65993836 A--TACATATC
1 ATGTGCATATC
65993845 ATGTGCATATC
1 ATGTGCATATC
* *
65993856 A--TACATGTC
1 ATGTGCATATC
65993865 ATGTGCATATC
1 ATGTGCATATC
65993876 AT
1 AT
65993878 ACATACCATG
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:66000216 original size:24 final size:24
Alignment explanation
Indices: 66000179--66000356 Score: 248
Period size: 24 Copynumber: 7.4 Consensus size: 24
66000169 CTAGAGGCCT
* *
66000179 AGCCTCTTTCAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
66000204 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
66000228 AGCCCTTTTGATAACTGGGGCACA
1 AGCCCTTTTAATAACTGGGGCATA
*
66000252 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
66000276 AGCCCTTTTAATAACCGAGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
66000300 CGCCCTTTTGATAACTTGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
66000324 AACCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
66000348 AGCCCTTTT
1 AGCCCTTTT
66000357 GCACTTCCTC
Statistics
Matches: 135, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
24 131 0.97
25 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:66000431 original size:20 final size:20
Alignment explanation
Indices: 66000406--66000472 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
66000396 TTATGAATAC
66000406 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
66000426 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66000446 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66000466 ACCATGT
1 ATCATGT
66000473 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66000437 original size:11 final size:11
Alignment explanation
Indices: 66000406--66000461 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
66000396 TTATGAATAC
66000406 ATCATGTGCAT
1 ATCATGTGCAT
*
66000417 ATCA--TACAT
1 ATCATGTGCAT
66000426 ATCATGTGCAT
1 ATCATGTGCAT
*
66000437 ATCA--TACAT
1 ATCATGTGCAT
*
66000446 GTCATGTGCAT
1 ATCATGTGCAT
66000457 ATCAT
1 ATCAT
66000462 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:66003790 original size:17 final size:18
Alignment explanation
Indices: 66003748--66003796 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
66003738 AGTTGAAAAG
66003748 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
66003767 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
66003784 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
66003797 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:66004685 original size:40 final size:40
Alignment explanation
Indices: 66004619--66004785 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
66004609 AAATTGAATG
* * *
66004619 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
66004658 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
66004698 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
66004738 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
66004778 ATATCCGG
1 ATATCCGG
66004786 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:66011789 original size:17 final size:18
Alignment explanation
Indices: 66011747--66011795 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
66011737 AGTTGAAAAG
66011747 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
66011766 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
66011783 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
66011796 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:66012683 original size:40 final size:40
Alignment explanation
Indices: 66012617--66012783 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
66012607 AAATTGAATG
* * *
66012617 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
66012656 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
66012696 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
66012736 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
66012776 ATATCCGG
1 ATATCCGG
66012784 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:66016399 original size:42 final size:41
Alignment explanation
Indices: 66016353--66016461 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 41
66016343 TCGATGCATC
* * *
66016353 TGTCCCAGACAGGGTCTTACATGAAA-TGAGATACGATGCCAA
1 TGTCCCAGACATGGTCTTACATGAAACTCA-AT-CGAGGCCAA
* **
66016395 TGTCCCAGACATGGTCTTATATGTAAATCTCAATCGAGGCCTG
1 TGTCCCAGACATGGTCTTACATG-AAA-CTCAATCGAGGCCAA
66016438 TGTCCCAGACATGGTCTTACATGA
1 TGTCCCAGACATGGTCTTACATGA
66016462 TGTCACAGAC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
42 22 0.39
43 31 0.54
44 2 0.04
45 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (41 bp):
TGTCCCAGACATGGTCTTACATGAAACTCAATCGAGGCCAA
Found at i:66018181 original size:29 final size:29
Alignment explanation
Indices: 66018144--66018263 Score: 141
Period size: 29 Copynumber: 4.1 Consensus size: 29
66018134 GCACACCCAA
* * * *
66018144 TGCCGTATTTTTCCAGCTTGCACACATAG
1 TGCCATATATTTCCAGCATGCACACTTAG
* *
66018173 TGTCATATTTTTCCAGCATGCACACTTAG
1 TGCCATATATTTCCAGCATGCACACTTAG
* * *
66018202 TACCTTATATTTCCAGCACGCACACTTAG
1 TGCCATATATTTCCAGCATGCACACTTAG
* *
66018231 TGCCATATATTTCCAGCACGAACACTTAG
1 TGCCATATATTTCCAGCATGCACACTTAG
66018260 TGCC
1 TGCC
66018264 GATCTCGTCA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 79 1.00
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (29 bp):
TGCCATATATTTCCAGCATGCACACTTAG
Found at i:66021802 original size:66 final size:68
Alignment explanation
Indices: 66021726--66021912 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
66021716 TAGTACCACT
*
66021726 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
66021788 CACG
65 CACG
66021792 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
66021857 ATCACG
63 ATCACG
66021863 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
66021913 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:66021837 original size:71 final size:71
Alignment explanation
Indices: 66021749--66021912 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66021739 CGATTTGTCT
66021749 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66021814 CTTTCA
66 CTTTCA
66021820 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66021885 CTTTCA
66 CTTTCA
66021891 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66021913 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66021950 original size:71 final size:70
Alignment explanation
Indices: 66021749--66021946 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
66021739 CGATTTGTCT
* * *
66021749 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
66021814 CTTTCA
65 CTTTCA
* * *
66021820 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
66021885 CTTTCA
65 CTTTCA
* *
66021891 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
66021947 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:66028898 original size:66 final size:68
Alignment explanation
Indices: 66028822--66029008 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
66028812 TAGTACCACT
*
66028822 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
66028884 CACG
65 CACG
66028888 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
66028953 ATCACG
63 ATCACG
66028959 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
66029009 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:66028933 original size:71 final size:71
Alignment explanation
Indices: 66028845--66029008 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66028835 CGATTTGTCT
66028845 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66028910 CTTTCA
66 CTTTCA
66028916 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66028981 CTTTCA
66 CTTTCA
66028987 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66029009 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66029046 original size:71 final size:70
Alignment explanation
Indices: 66028845--66029042 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
66028835 CGATTTGTCT
* * *
66028845 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
66028910 CTTTCA
65 CTTTCA
* * *
66028916 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
66028981 CTTTCA
65 CTTTCA
* *
66028987 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
66029043 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:66035608 original size:70 final size:71
Alignment explanation
Indices: 66035504--66035666 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
66035494 CGATTTGTCT
66035504 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66035569 CTTTCA
66 CTTTCA
66035575 CGTAGCTCTCTTGTCTA-ATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66035639 CTTTCA
66 CTTTCA
66035645 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66035667 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
70 70 0.77
71 21 0.23
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66035703 original size:70 final size:69
Alignment explanation
Indices: 66035504--66035699 Score: 247
Period size: 70 Copynumber: 2.8 Consensus size: 69
66035494 CGATTTGTCT
* * *
66035504 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTA-ATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
66035569 CTTTCA
64 CTTTCA
* * *
66035575 CGTAGCTCTCTTGTCTAATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATC
1 CGTAGCTCTCTTGTCTAATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTATC
66035640 TTTCA
65 TTTCA
* *
66035645 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGA-CTAGCTAC
1 CGTAGCTCTCTTGTCTA-ATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
66035700 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
67 8 0.07
68 14 0.12
69 1 0.01
70 71 0.60
71 24 0.20
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (69 bp):
CGTAGCTCTCTTGTCTAATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATCT
TTCA
Found at i:66042636 original size:66 final size:68
Alignment explanation
Indices: 66042560--66042746 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
66042550 TAGTACCACT
*
66042560 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
66042622 CACG
65 CACG
66042626 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
66042691 ATCACG
63 ATCACG
66042697 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
66042747 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:66042671 original size:71 final size:71
Alignment explanation
Indices: 66042583--66042746 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
66042573 CGATTTGTCT
66042583 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66042648 CTTTCA
66 CTTTCA
66042654 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66042719 CTTTCA
66 CTTTCA
66042725 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66042747 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66042784 original size:71 final size:70
Alignment explanation
Indices: 66042583--66042780 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
66042573 CGATTTGTCT
* * *
66042583 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
66042648 CTTTCA
65 CTTTCA
* * *
66042654 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
66042719 CTTTCA
65 CTTTCA
* *
66042725 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
66042781 TACAGGGTAT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:66049116 original size:29 final size:29
Alignment explanation
Indices: 66049084--66049218 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
66049074 GTACCCTCCG
** * *
66049084 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
66049113 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
66049142 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
66049171 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
66049200 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
66049219 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:66049151 original size:58 final size:58
Alignment explanation
Indices: 66049088--66049219 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
66049078 CCTCCGAGCT
** * ** * *
66049088 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
66049146 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
66049204 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
66049220 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:66055844 original size:111 final size:111
Alignment explanation
Indices: 66055719--66055945 Score: 409
Period size: 111 Copynumber: 2.0 Consensus size: 111
66055709 TATGATTAAA
66055719 TAAGTTAATTTTAAATATATTTAGATCAAGAAAGGAGAAATACAGATTTGGATTGAGGAAAAGAT
1 TAAGTTAATTTTAAATATATTTAGATCAAGAAAGGAGAAATACAGATTTGGATTGAGGAAAAGAT
* *
66055784 AAAGTTATCTACTAATCGACTAGATTCACCGTTTTAACATCCGAGG
66 AAAGTTATCGACTAATCAACTAGATTCACCGTTTTAACATCCGAGG
* *
66055830 TAAGTTAATTTTAAATATATTTAGATCAAGAAATGAGAAATACAGATTTGGATTGGGGAAAAGAT
1 TAAGTTAATTTTAAATATATTTAGATCAAGAAAGGAGAAATACAGATTTGGATTGAGGAAAAGAT
*
66055895 AAAGTTATCGACTAATCAACTAGATTCACCGTTTTAACATTCGAGG
66 AAAGTTATCGACTAATCAACTAGATTCACCGTTTTAACATCCGAGG
66055941 TAAGT
1 TAAGT
66055946 GTATGTTATA
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (111 bp):
TAAGTTAATTTTAAATATATTTAGATCAAGAAAGGAGAAATACAGATTTGGATTGAGGAAAAGAT
AAAGTTATCGACTAATCAACTAGATTCACCGTTTTAACATCCGAGG
Found at i:66057939 original size:43 final size:42
Alignment explanation
Indices: 66057796--66057959 Score: 195
Period size: 42 Copynumber: 3.9 Consensus size: 42
66057786 TTAGGGTTAC
* *
66057796 TGAGATTACATGTAAGACCATATTTGGGATATGGCATCTATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
66057838 TGAGATTTCGTGTAAGACCATATCTAGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
66057880 TGAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
* * **
66057923 CGAGATTACATATAAGACCATATCTAAGATATGGCAT
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
66057960 TGGCAAGGTA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 70 0.67
43 34 0.33
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:66059051 original size:35 final size:34
Alignment explanation
Indices: 66059001--66059072 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 34
66058991 GTATGCTTGG
* *
66059001 TGAATCTGAATTGTTTGGAAATGTGATTTATGGCA
1 TGAATCTGAAATGTTTGGAAATGTGATTCATGG-A
* *
66059036 TGAATGTGAAATGTTTGGTAATGTGATTCATGGA
1 TGAATCTGAAATGTTTGGAAATGTGATTCATGGA
66059070 TGA
1 TGA
66059073 GATGATAGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.29, C:0.04, G:0.28, T:0.39
Consensus pattern (34 bp):
TGAATCTGAAATGTTTGGAAATGTGATTCATGGA
Found at i:66062647 original size:26 final size:23
Alignment explanation
Indices: 66062600--66062652 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 23
66062590 GCATTATTGA
66062600 AATTTTGAATTAGTAATAAGGTT
1 AATTTTGAATTAGTAATAAGGTT
66062623 AATTTTGATATTTAGTAAATAAGGTT
1 AATTTTGA-A-TTAGT-AATAAGGTT
66062649 AATT
1 AATT
66062653 AAAATAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 8 0.30
24 1 0.04
25 5 0.19
26 13 0.48
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (23 bp):
AATTTTGAATTAGTAATAAGGTT
Found at i:66074934 original size:47 final size:47
Alignment explanation
Indices: 66074875--66075021 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 47
66074865 TTAGGATTGT
* * *
66074875 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
* * *
66074922 ATGTGATAAATGTGAGCGTGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
66074969 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCAAATGGCTA
1 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
66075016 ATGTGA
1 ATGTGA
66075022 AATATGTATG
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
Found at i:66075279 original size:25 final size:25
Alignment explanation
Indices: 66075245--66075295 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
66075235 AAGACCCGAT
66075245 GACTACGTGTGGAGATTATGTCCGG
1 GACTACGTGTGGAGATTATGTCCGG
*
66075270 GACTACGTGTGGAGATTTTGTCCGG
1 GACTACGTGTGGAGATTATGTCCGG
66075295 G
1 G
66075296 TAAGACCCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.18, C:0.16, G:0.37, T:0.29
Consensus pattern (25 bp):
GACTACGTGTGGAGATTATGTCCGG
Found at i:66078033 original size:45 final size:45
Alignment explanation
Indices: 66077934--66078059 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
66077924 TTTTCTCAAA
* *
66077934 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGG-CCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
66077975 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
66078019 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
66078060 ATCAAGTCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
41 11 0.15
42 14 0.19
43 3 0.04
44 4 0.05
45 40 0.55
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:66078444 original size:16 final size:16
Alignment explanation
Indices: 66078423--66078464 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
66078413 TACACATCAC
66078423 AGGCACGAAGCCTGCT
1 AGGCACGAAGCCTGCT
66078439 AGGCACGAAGCCTGCT
1 AGGCACGAAGCCTGCT
66078455 AGGCACGAAG
1 AGGCACGAAG
66078465 GCCGAATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.29, C:0.29, G:0.33, T:0.10
Consensus pattern (16 bp):
AGGCACGAAGCCTGCT
Found at i:66078486 original size:58 final size:59
Alignment explanation
Indices: 66078389--66078506 Score: 220
Period size: 58 Copynumber: 2.0 Consensus size: 59
66078379 CCGGCATTAC
66078389 GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACGAAGCCTGCTAGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACGAAGCCTGCTAGGCACGAA
*
66078448 GCCTGCTAGGCACGAAGG-CCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACGAAGCCTGCTAGGCACGAA
66078506 G
1 G
66078507 GCCCGAATAC
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
58 40 0.69
59 18 0.31
ACGTcount: A:0.30, C:0.32, G:0.28, T:0.10
Consensus pattern (59 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCACGAAGCCTGCTAGGCACGAA
Found at i:66078527 original size:43 final size:43
Alignment explanation
Indices: 66078440--66078600 Score: 272
Period size: 42 Copynumber: 3.8 Consensus size: 43
66078430 AAGCCTGCTA
66078440 GGCACGAAGCCTGCTAGGCACGAAGG-CCGAATACACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
66078482 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* *
66078525 GGCACTAAGCCTGCTAGGCACGAAGGCCCAAATACACATCA-C
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
* *
66078567 GGCACTAAGCCTGCTAGGCATGAAGGCCCGAATA
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATA
66078601 ATACCAGCAC
Statistics
Matches: 114, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
42 59 0.52
43 55 0.48
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.11
Consensus pattern (43 bp):
GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
Found at i:66078547 original size:85 final size:85
Alignment explanation
Indices: 66078440--66078600 Score: 270
Period size: 85 Copynumber: 1.9 Consensus size: 85
66078430 AAGCCTGCTA
*
66078440 GGCACGAAGCCTGCTAGGCACGAAGG-CCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCA-CGGCACGAAGCCTGCTAGGCACG
66078504 AAGGCCCGAATACACATCACC
65 AAGGCCCGAATACACATCACC
* * *
66078525 GGCACTAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACGGCACTAAGCCTGCTAGGCATGA
1 GGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACGGCACGAAGCCTGCTAGGCACGA
66078590 AGGCCCGAATA
66 AGGCCCGAATA
66078601 ATACCAGCAC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
85 58 0.82
86 13 0.18
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.11
Consensus pattern (85 bp):
GGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCACGGCACGAAGCCTGCTAGGCACGA
AGGCCCGAATACACATCACC
Found at i:66082787 original size:29 final size:27
Alignment explanation
Indices: 66082753--66082855 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
66082743 TACTCGATCA
*
66082753 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
66082782 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
66082811 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
66082840 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
66082856 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:66084198 original size:17 final size:19
Alignment explanation
Indices: 66084164--66084201 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
66084154 TCCACACACA
66084164 TTTTTTTTCATCATTTTCTT
1 TTTTTTTTCA-CATTTTCTT
66084184 TTTTTTTTC-CA-TTTCTT
1 TTTTTTTTCACATTTTCTT
66084201 T
1 T
66084202 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
18 2 0.11
20 9 0.50
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTTTCACATTTTCTT
Found at i:66090389 original size:29 final size:28
Alignment explanation
Indices: 66090357--66090431 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
66090347 TATATAGAGT
*
66090357 TCGCACACATAGTGCCATATAGTCCAAAC
1 TCGCACAC-TAGTGCCATACAGTCCAAAC
* * *
66090386 TCGCACACTTAGTGCCATACATTTCAAGC
1 TCGCACAC-TAGTGCCATACAGTCCAAAC
66090415 TCGCACACTCAGTGCCA
1 TCGCACACT-AGTGCCA
66090432 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (28 bp):
TCGCACACTAGTGCCATACAGTCCAAAC
Found at i:66091775 original size:18 final size:20
Alignment explanation
Indices: 66091740--66091778 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
66091730 TCCACACACA
66091740 TTTTTTTTCATCATTTTCTTT
1 TTTTTTTTCA-CATTTTCTTT
66091761 TTTTTTTTC-CA-TTTCTTT
1 TTTTTTTTCACATTTTCTTT
66091779 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
21 9 0.50
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTTCACATTTTCTTT
Found at i:66093787 original size:18 final size:19
Alignment explanation
Indices: 66093764--66093831 Score: 106
Period size: 18 Copynumber: 3.7 Consensus size: 19
66093754 CTTAGCCCAT
66093764 TGCAGTAACAGTAAAT-AG
1 TGCAGTAACAGTAAATCAG
*
66093782 TGCAGTAACAG-AAATCAA
1 TGCAGTAACAGTAAATCAG
66093800 TGCAGTAACAGT-AATCAG
1 TGCAGTAACAGTAAATCAG
66093818 TGCAGTAACAGTAA
1 TGCAGTAACAGTAA
66093832 CAGTAAACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
17 4 0.09
18 40 0.89
19 1 0.02
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.21
Consensus pattern (19 bp):
TGCAGTAACAGTAAATCAG
Found at i:66093842 original size:7 final size:6
Alignment explanation
Indices: 66093802--66093843 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
66093792 GAAATCAATG
*
66093802 CAGTAA CAGTAA TCAGT-G CAGTAA CAGTAA CAGTAAA CAGTA
1 CAGTAA CAGTAA -CAGTAA CAGTAA CAGTAA CAGT-AA CAGTA
66093844 TGTAAATCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 4 0.13
6 17 0.55
7 10 0.32
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:66094290 original size:81 final size:81
Alignment explanation
Indices: 66094165--66094354 Score: 265
Period size: 81 Copynumber: 2.3 Consensus size: 81
66094155 ATATACATAC
** * *
66094165 ATCAAA-AAGGGGCAAAGCAGTCATTTTACCTCATAAGGGAAAAACCATCATTTTACCTCATAAG
1 ATCAAATAA-GGGCAAAATAGTCATTTTACCCCATAAAGGAAAAACCATCATTTTACCTCATAAG
66094229 GGAAAAATCGTCATTTT
65 GGAAAAATCGTCATTTT
* * * *
66094246 ATCAAATAAGGGCAAAATAGTTATTTTTCCCCATAAAGGCAAAACCGTCATTTTACCTCATAAGG
1 ATCAAATAAGGGCAAAATAGTCATTTTACCCCATAAAGGAAAAACCATCATTTTACCTCATAAGG
* *
66094311 GCAAAATTGTCATTTT
66 GAAAAATCGTCATTTT
*
66094327 ATAAAATAAGGGCAAAATAGTCATTTTA
1 ATCAAATAAGGGCAAAATAGTCATTTTA
66094355 TCTTATAAGG
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 93 0.98
82 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (81 bp):
ATCAAATAAGGGCAAAATAGTCATTTTACCCCATAAAGGAAAAACCATCATTTTACCTCATAAGG
GAAAAATCGTCATTTT
Found at i:66094322 original size:27 final size:27
Alignment explanation
Indices: 66094184--66094365 Score: 175
Period size: 27 Copynumber: 6.7 Consensus size: 27
66094174 GGGCAAAGCA
* *
66094184 GTCATTTTACCTCATAAGGGAAAAACC
1 GTCATTTTACCTCATAAGGGCAAAATC
* *
66094211 ATCATTTTACCTCATAAGGGAAAAATC
1 GTCATTTTACCTCATAAGGGCAAAATC
* ** *
66094238 GTCATTTTATCAAATAAGGGCAAAATA
1 GTCATTTTACCTCATAAGGGCAAAATC
* * * * *
66094265 GTTATTTTTCCCCATAAAGGCAAAACC
1 GTCATTTTACCTCATAAGGGCAAAATC
*
66094292 GTCATTTTACCTCATAAGGGCAAAATT
1 GTCATTTTACCTCATAAGGGCAAAATC
**** *
66094319 GTCATTTTATAAAATAAGGGCAAAATA
1 GTCATTTTACCTCATAAGGGCAAAATC
* *
66094346 GTCATTTTATCTTATAAGGG
1 GTCATTTTACCTCATAAGGG
66094366 TTCAAGTATG
Statistics
Matches: 125, Mismatches: 30, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (27 bp):
GTCATTTTACCTCATAAGGGCAAAATC
Found at i:66097120 original size:38 final size:39
Alignment explanation
Indices: 66097017--66097197 Score: 116
Period size: 39 Copynumber: 4.7 Consensus size: 39
66097007 TATAAAGAGC
* * *
66097017 ACCAAAGTACAATAGGGGCACGTAAGCGCAATTAAGGGT
1 ACCAAAGTACAACAGGGGCACGTAAGTGTAATTAAGGGT
* ** * *
66097056 ACCGAAGTATGACAGGGGTACGTAAGTGTAATT-GGGGT
1 ACCAAAGTACAACAGGGGCACGTAAGTGTAATTAAGGGT
* * * *
66097094 ACCAAAGTACAACAGTGGCACATAAGTGTGA-TCAGGGT
1 ACCAAAGTACAACAGGGGCACGTAAGTGTAATTAAGGGT
** * * ** * *
66097132 ACTGAAGTATCGACAAGGGCAC-TCAAGTGCGATCAGGGGT
1 ACCAAAGTA-CAACAGGGGCACGT-AAGTGTAATTAAGGGT
* * *
66097172 ACCGAAGTACGATAGGGGCACGTAAG
1 ACCAAAGTACAACAGGGGCACGTAAG
66097198 CGTGATCAGG
Statistics
Matches: 109, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 1 0.01
38 40 0.37
39 55 0.50
40 13 0.12
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (39 bp):
ACCAAAGTACAACAGGGGCACGTAAGTGTAATTAAGGGT
Found at i:66097191 original size:39 final size:39
Alignment explanation
Indices: 66097052--66097207 Score: 129
Period size: 38 Copynumber: 4.0 Consensus size: 39
66097042 GCGCAATTAA
* * * ** *
66097052 GGGTACCGAAGTATGACAGGGGTACGTAAGTGTAAT-TG
1 GGGTACCGAAGTACGACAGGGGCACATAAGTGCGATCAG
* * * *
66097090 GGGTACCAAAGTACAACAGTGGCACATAAGTGTGATCA-
1 GGGTACCGAAGTACGACAGGGGCACATAAGTGCGATCAG
* *
66097128 GGGTACTGAAGTATCGACAAGGGCAC-TCAAGTGCGATCAG
1 GGGTACCGAAGTA-CGACAGGGGCACAT-AAGTGCGATCAG
* * * *
66097168 GGGTACCGAAGTACGATAGGGGCACGTAAGCGTGATCAG
1 GGGTACCGAAGTACGACAGGGGCACATAAGTGCGATCAG
66097207 G
1 G
66097208 AGTATAATTA
Statistics
Matches: 94, Mismatches: 19, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
38 41 0.44
39 40 0.43
40 13 0.14
ACGTcount: A:0.31, C:0.17, G:0.34, T:0.19
Consensus pattern (39 bp):
GGGTACCGAAGTACGACAGGGGCACATAAGTGCGATCAG
Found at i:66099289 original size:43 final size:44
Alignment explanation
Indices: 66099141--66099293 Score: 161
Period size: 43 Copynumber: 3.5 Consensus size: 44
66099131 GGTTACCGAG
* *
66099141 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-ATT
* *
66099186 GTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATC-ATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATT
* * * * *
66099229 AT-TCAATTTCGTCTAAGATCC-TGTCTGGGACAGTGGCATCGA-T
1 ATGT-GATTACATGTAAGA-CCATGTCTGGGACATTGGCATCGATT
*
66099272 ATGTGATGACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
66099294 ATCTAGGATA
Statistics
Matches: 87, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
42 3 0.03
43 44 0.51
44 4 0.05
45 36 0.41
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATT
Found at i:66103104 original size:18 final size:19
Alignment explanation
Indices: 66103081--66103116 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
66103071 AACTTGGCAC
*
66103081 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
66103099 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
66103117 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:66108652 original size:96 final size:94
Alignment explanation
Indices: 66108487--66108811 Score: 374
Period size: 96 Copynumber: 3.4 Consensus size: 94
66108477 GGTAGGATGT
* * * *
66108487 CGATGTCATGCCCCAAACATGGTCTTACACTAGCTCATA-CATCAAGTTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATC-TCAAGTTGATGCCATGTCCCAGA
*
66108551 CATGGTCTTACACTGTTTCTCACATATCCGTCC
65 CATGGTCTTACACTG--TCTCACATAT-CGTGC
66108584 CGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATCTCATAGTTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATCTCA-AGTTGATGCCATGTCCCAGA
* * *
66108647 CATGGTCTTACACTGGCTCACATCTCGAGGC
65 CATGGTCTTACACTGTCTCACATATCG-TGC
* * * * * *
66108678 CGATGCCATGTCCTAGACATGGTCATACACTAGCTCTCATCTCAATGCTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATCTCAA-GTTGATGCCATGTCCCAGA
* * *
66108743 CATGGTCTTACATTGGCTCTCATAAT-GTGGC
65 CATGGTCTTACACTGTCTCACAT-ATCGT-GC
66108774 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCACACAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACAT
66108812 GTCACCCAAA
Statistics
Matches: 197, Mismatches: 23, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
93 2 0.01
94 53 0.27
95 20 0.10
96 92 0.47
97 30 0.15
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATCTCAAGTTGATGCCATGTCCCAGAC
ATGGTCTTACACTGTCTCACATATCGTGC
Found at i:66108688 original size:48 final size:48
Alignment explanation
Indices: 66108487--66108811 Score: 258
Period size: 48 Copynumber: 6.8 Consensus size: 48
66108477 GGTAGGATGT
* * * * *
66108487 CGATGTCATGCCCCAAACATGGTCTTACACTAGCTCATA-CATC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATC-TCGAAGC
* * **
66108534 TGATGCCATGTCCCAGACATGGTCTTACACT-GTTTCTCACATATCCG-TCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG---CTCACATCT-CGAAGC
* * *
66108584 CGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATCTC-ATAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGA-AGC
* * *
66108630 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAAGC
* * *
66108678 CGATGCCATGTCCTAGACATGGTCATACACTAGCTCTCATCTC-AATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAA-GC
* * * * * **
66108726 TGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-CTCGAAGC
* *
66108774 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCACACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
66108812 GTCACCCAAA
Statistics
Matches: 223, Mismatches: 41, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.00
46 51 0.23
47 42 0.19
48 90 0.40
49 8 0.04
50 31 0.14
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAAGC
Found at i:66111145 original size:30 final size:30
Alignment explanation
Indices: 66111090--66111249 Score: 215
Period size: 29 Copynumber: 5.5 Consensus size: 30
66111080 ATAGTGAATC
66111090 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66111119 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66111149 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
66111178 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * *
66111206 CGCACACTTAGTGC-AGTACAATTTTAAACC
1 CGCACACTTAGTGCTA-TATAATTTTCAGCT
66111236 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66111250 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 4, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
27 3 0.03
28 21 0.17
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:66111182 original size:59 final size:57
Alignment explanation
Indices: 66111090--66111219 Score: 217
Period size: 59 Copynumber: 2.2 Consensus size: 57
66111080 ATAGTGAATC
*
66111090 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
66111149 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
66111206 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66111220 AGTACAATTT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
56 2 0.03
57 17 0.25
59 50 0.72
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:66119055 original size:30 final size:30
Alignment explanation
Indices: 66119000--66119159 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
66118990 ATAGTGAATC
66119000 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66119029 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66119059 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
66119088 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
66119116 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
66119146 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66119160 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:66119092 original size:59 final size:57
Alignment explanation
Indices: 66119000--66119159 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
66118990 ATAGTGAATC
*
66119000 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
66119059 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
66119116 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
66119160 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:66128153 original size:31 final size:29
Alignment explanation
Indices: 66128117--66128191 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
66128107 CTTCGAGCTC
* *
66128117 GCACACCCAGTGCCGTATTTTTTTCCAGCAT
1 GCACACCCAGTGCC--ATATATTTCCAGCAT
**
66128148 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
66128177 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
66128192 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 28 0.70
31 12 0.30
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:66129382 original size:19 final size:17
Alignment explanation
Indices: 66129346--66129402 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 17
66129336 AGAATGAACA
*
66129346 CTTTTTTTT-TTCTTTT
1 CTTTTTTTTCTTCATTT
66129362 CTTTGTTTTTCTTCATATT
1 CTTT-TTTTTCTTCAT-TT
*
66129381 CTATTTTTTTTTTCATTT
1 CT-TTTTTTTCTTCATTT
66129399 CTTT
1 CTTT
66129403 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 4 0.11
17 7 0.20
18 8 0.23
19 14 0.40
20 2 0.06
ACGTcount: A:0.07, C:0.14, G:0.02, T:0.77
Consensus pattern (17 bp):
CTTTTTTTTCTTCATTT
Found at i:66132618 original size:47 final size:48
Alignment explanation
Indices: 66132559--66132668 Score: 159
Period size: 48 Copynumber: 2.3 Consensus size: 48
66132549 CAGTAATGCG
*
66132559 GATAAACTGCCACATAATCAAA-TTGTGGACAAGCCACCAATTTTGCA
1 GATATACTGCCACATAATCAAATTTGTGGACAAGCCACCAATTTTGCA
* * *
66132606 GATATACTGCCACATAATCAAATTTGTGGACAGGCTACCACTTTTGCA
1 GATATACTGCCACATAATCAAATTTGTGGACAAGCCACCAATTTTGCA
* *
66132654 AATATACTACCACAT
1 GATATACTGCCACAT
66132669 TCTTCCACCT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
47 21 0.38
48 35 0.62
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (48 bp):
GATATACTGCCACATAATCAAATTTGTGGACAAGCCACCAATTTTGCA
Found at i:66134825 original size:8 final size:8
Alignment explanation
Indices: 66134814--66134842 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
66134804 AGTGGTTAAG
66134814 TGGAGTGT
1 TGGAGTGT
66134822 TGGAGTGT
1 TGGAGTGT
66134830 TGGAGTGT
1 TGGAGTGT
66134838 TGGAG
1 TGGAG
66134843 GTTCTTTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.52, T:0.34
Consensus pattern (8 bp):
TGGAGTGT
Found at i:66136997 original size:18 final size:19
Alignment explanation
Indices: 66136959--66136999 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
66136949 TGGTTCATGT
66136959 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
66136978 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
66136996 TTTC
1 TTTC
66137000 TCATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:66137189 original size:39 final size:38
Alignment explanation
Indices: 66137122--66137256 Score: 92
Period size: 39 Copynumber: 3.4 Consensus size: 38
66137112 ACCAATATGG
* * *
66137122 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
66137161 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * * *
66137199 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTAA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
66137240 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
66137257 ACTCGAGGTC
Statistics
Matches: 72, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.49
40 4 0.06
41 15 0.21
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:66137522 original size:18 final size:20
Alignment explanation
Indices: 66137496--66137535 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
66137486 TTTCAATTCA
66137496 ATTCAAATAATCAAT-ATAT
1 ATTCAAATAATCAATAATAT
*
66137515 ATTC-AATATTCAATAATAT
1 ATTCAAATAATCAATAATAT
66137534 AT
1 AT
66137536 CTATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTCAAATAATCAATAATAT
Found at i:66138846 original size:5 final size:5
Alignment explanation
Indices: 66138836--66138867 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
66138826 TTATGTTTAT
66138836 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
66138868 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:66143349 original size:18 final size:19
Alignment explanation
Indices: 66143311--66143351 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
66143301 TGGTTCATGT
66143311 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
66143330 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
66143348 TTTC
1 TTTC
66143352 TCATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:66143873 original size:18 final size:19
Alignment explanation
Indices: 66143847--66143885 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
66143837 TTTCAATTCA
66143847 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
66143866 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
66143884 AT
1 AT
66143886 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:66145200 original size:5 final size:5
Alignment explanation
Indices: 66145190--66145216 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
66145180 TTATGTTTAT
66145190 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
66145217 TAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:66146224 original size:40 final size:40
Alignment explanation
Indices: 66146169--66146336 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
66146159 TGAATGATAC
* *
66146169 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
66146209 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
66146249 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
66146289 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
66146329 CC-GGCTAA
1 CCGGGCTAA
66146337 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:66154509 original size:40 final size:40
Alignment explanation
Indices: 66154454--66154621 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
66154444 TGAATGATAC
* *
66154454 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
66154494 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
66154534 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
66154574 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
66154614 CC-GGCTAA
1 CCGGGCTAA
66154622 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:66163467 original size:13 final size:13
Alignment explanation
Indices: 66163449--66163473 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66163439 GAACTATGAA
66163449 ATTAATGAGTACT
1 ATTAATGAGTACT
66163462 ATTAATGAGTAC
1 ATTAATGAGTAC
66163474 AGAAGAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
ATTAATGAGTACT
Found at i:66166143 original size:30 final size:30
Alignment explanation
Indices: 66166109--66166166 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
66166099 CCTTAACTCT
*
66166109 AACTTTTGCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* * *
66166139 AACTTTTACATATTTACACTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
66166167 AAATCTCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:66167371 original size:2 final size:2
Alignment explanation
Indices: 66167359--66167402 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
66167349 AGAAATCTAC
*
66167359 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66167401 AT
1 AT
66167403 TGTTTACTAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:66169880 original size:34 final size:34
Alignment explanation
Indices: 66169840--66169905 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
66169830 TCAACCTTTC
*
66169840 TCACCTAACTTCCAAATGCATAATCTTACCATTT
1 TCACCTAACTTCCAAATACATAATCTTACCATTT
*
66169874 TCACCTAACTTCCAGATACATAATCTTACCAT
1 TCACCTAACTTCCAAATACATAATCTTACCAT
66169906 CTTTTTACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.33
Consensus pattern (34 bp):
TCACCTAACTTCCAAATACATAATCTTACCATTT
Found at i:66173462 original size:22 final size:23
Alignment explanation
Indices: 66173408--66173459 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
66173398 TATAAAACCT
66173408 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
* *
66173430 AATAAAAAGTAGTCTTAAAGTAG
1 AATAAAAAGTAGTCTTAAAGAAA
66173453 AATAAAA
1 AATAAAA
66173460 GTAAAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:66179597 original size:13 final size:13
Alignment explanation
Indices: 66179579--66179605 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
66179569 GCTCGACAGG
66179579 GACACGCCCGTGT
1 GACACGCCCGTGT
66179592 GACACGCCCGTGT
1 GACACGCCCGTGT
66179605 G
1 G
66179606 CGATTACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:66180211 original size:43 final size:43
Alignment explanation
Indices: 66180099--66180268 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 43
66180089 ATAAAGGTCG
* * * *
66180099 TACAATG-CAATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* * * * * * *
66180140 TATCGACGCCACTATCCTAGACAGGGTCTTACACGAAATCACAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* * * * *
66180184 TACGATGCCAATGTCTCAGGCATGGTCTTATACGTAATCATAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* *
66180227 TACAATGCCAATGTCCCAGACATGGTATTACATGTAATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
66180269 TCTCGATAAG
Statistics
Matches: 100, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 92 0.92
44 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
Found at i:66198812 original size:22 final size:22
Alignment explanation
Indices: 66198787--66198862 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
66198777 AGATATGTAT
66198787 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
66198809 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
66198833 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
66198856 ATGTGAT
1 ATGTGAT
66198863 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:66198837 original size:47 final size:47
Alignment explanation
Indices: 66198784--66199266 Score: 795
Period size: 47 Copynumber: 10.3 Consensus size: 47
66198774 ACAAGATATG
66198784 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
66198831 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
66198878 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
66198925 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
66198972 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
66199019 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
66199066 TATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
66199113 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
66199160 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
66199207 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
66199254 TAAATGTGATAAG
1 TATATGTGATAAG
66199267 TCCCGAAGGG
Statistics
Matches: 419, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 419 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:66201349 original size:50 final size:50
Alignment explanation
Indices: 66201290--66201390 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
66201280 AAACTCTTTT
*
66201290 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCTAAG
1 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCCAAG
66201340 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCCAAG
1 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCCAAG
66201390 T
1 T
66201391 GTGGAAAAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (50 bp):
TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCCAAG
Found at i:66205947 original size:43 final size:43
Alignment explanation
Indices: 66205780--66205952 Score: 178
Period size: 43 Copynumber: 4.0 Consensus size: 43
66205770 ATATCATACA
* *
66205780 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCACATGTCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACG-AATCACATATCG
66205823 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAATCACA-ATTACG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACACGAATCACATA-T-CG
* * * *
66205866 ATGCCGA-TGTCCTAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* *
66205909 ATGCCAACT-TCCTAGACGTGGTCTTACACGAGAGCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
66205952 A
1 A
66205953 AAATCCTATG
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 11 0.10
43 88 0.79
44 11 0.10
45 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:66208468 original size:38 final size:38
Alignment explanation
Indices: 66208374--66208535 Score: 254
Period size: 38 Copynumber: 4.3 Consensus size: 38
66208364 AGGCCCAGAT
* * *
66208374 ATAT-TTCTAGCACGCAGCCTGCGGACCTCAGGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
* *
66208411 ATATGTTTCCAACACGTAGCCTGTGGACCTCAAGTCCGG
1 ATATG-TTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
*
66208450 ATATGTTCCAGCACGTAGCCTGCAGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
66208488 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
66208526 ATATGTTCCA
1 ATATGTTCCA
66208536 AATATCATGC
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
37 4 0.04
38 77 0.68
39 33 0.29
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.23
Consensus pattern (38 bp):
ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
Found at i:66213738 original size:30 final size:30
Alignment explanation
Indices: 66213702--66213861 Score: 215
Period size: 29 Copynumber: 5.5 Consensus size: 30
66213692 GACAAGATTG
* * * *
66213702 GCACTAAGTGTGCGGGTTTAAAATTGTACT-
1 GCACTAAGTGTGCGAGCTGAAAATTATA-TA
*
66213732 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
66213760 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
66213789 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
66213819 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
66213848 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66213862 GATTCACTAT
Statistics
Matches: 120, Mismatches: 4, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
27 3 0.03
28 21 0.17
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:66213829 original size:59 final size:57
Alignment explanation
Indices: 66213732--66213861 Score: 217
Period size: 59 Copynumber: 2.2 Consensus size: 57
66213722 AAATTGTACT
*
66213732 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
66213789 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTG---ATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
66213848 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66213862 GATTCACTAT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
56 2 0.03
57 16 0.23
59 51 0.74
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:66214972 original size:40 final size:38
Alignment explanation
Indices: 66214912--66215052 Score: 135
Period size: 40 Copynumber: 3.7 Consensus size: 38
66214902 TGCTGGAAAT
* * *
66214912 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTGG
*
66214951 CTATATCCGGGCTAAGACCCGAA-GC-TTCGTGCAAGTTG
1 -TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTGG
* *
66214989 T-TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTGG
* * *
66215027 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
66215053 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
36 20 0.23
37 5 0.06
38 17 0.20
39 4 0.05
40 40 0.47
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGG
Found at i:66221046 original size:40 final size:39
Alignment explanation
Indices: 66220958--66221141 Score: 140
Period size: 40 Copynumber: 4.6 Consensus size: 39
66220948 AAATTGAATG
* * * *
66220958 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGCAA-T-TG-TGCAAGTCGT
* * * *
66220998 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCG-T
* *
66221038 ATATCCGGGCTAAGACCCGAAGGC-ATTCATGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTCG-T
* * *
66221078 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGT
* * *
66221117 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
66221142 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 5 0.04
40 103 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGT
Found at i:66227042 original size:124 final size:122
Alignment explanation
Indices: 66226883--66227104 Score: 304
Period size: 124 Copynumber: 1.8 Consensus size: 122
66226873 AATTATGTGG
* * * *
66226883 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAG-TATTCGAATGATACCCGGGC
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATACCCGGGC
* * *
66226947 TAAGTCCCGAAGGCGAA-TATGCTAGTAATTATAATTGTGTTTGAGCCTTAGTAACGAA
65 TAAGCCCCGAAGAC-AATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGAA
* *
66227005 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
*
66227070 CTAAGCCCCGAAGACAATTATGCTGGAAATTATAA
64 CTAAGCCCCGAAGACAATTATGCTAGAAATTATAA
66227105 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
122 15 0.17
123 2 0.02
124 66 0.77
125 3 0.03
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.32
Consensus pattern (122 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGGCT
AAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGAA
Found at i:66227149 original size:40 final size:39
Alignment explanation
Indices: 66227061--66227244 Score: 140
Period size: 40 Copynumber: 4.6 Consensus size: 39
66227051 AAATTGAATG
* * * *
66227061 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGCAA-T-TG-TGCAAGTCGT
* * * *
66227101 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCG-T
*
66227141 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTCG-T
* * * *
66227181 AAATCCAGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGT
* * *
66227220 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
66227245 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 5 0.04
40 103 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGT
Found at i:66229081 original size:21 final size:20
Alignment explanation
Indices: 66229053--66229094 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
66229043 CAAAATTTGT
*
66229053 ATAACTATCATTAAACATTC
1 ATAACTATCATCAAACATTC
*
66229073 ATAATCTATCATCAATCATTC
1 ATAA-CTATCATCAAACATTC
66229094 A
1 A
66229095 AATACATGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:66239489 original size:19 final size:20
Alignment explanation
Indices: 66239465--66239503 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
66239455 TTTTCTGTTG
*
66239465 CTTACATCTA-GTACCATTA
1 CTTACATCCACGTACCATTA
66239484 CTTACATCCACGTACCATTA
1 CTTACATCCACGTACCATTA
66239504 TCTTTTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (20 bp):
CTTACATCCACGTACCATTA
Found at i:66242226 original size:37 final size:37
Alignment explanation
Indices: 66242176--66242262 Score: 131
Period size: 37 Copynumber: 2.3 Consensus size: 37
66242166 TGCGAAGTCT
*
66242176 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACATAGTCATCGGGTCG
*
66242213 TACCCGTACATAATCTCCACACATAGTCATCGGGTC-
1 TACCCGGACATAATCTCCACACATAGTCATCGGGTCG
66242249 TCACCCGGAACATA
1 T-ACCCGG-ACATA
66242263 TTTCCAAGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.02
37 39 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACATAGTCATCGGGTCG
Found at i:66242410 original size:100 final size:99
Alignment explanation
Indices: 66242326--66242788 Score: 432
Period size: 106 Copynumber: 4.6 Consensus size: 99
66242316 TCGGCTTTAC
66242326 CACATATACA-TATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CACATATACATTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
* *
66242390 CATTCCTCACATCGGCCATTAGGCCTTATCGCATA
66 CATTCATCACATCGGCCATTA-GCCATATCGCATA
* * * *
66242425 TATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
1 CACATATACATTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
* *
66242490 CATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 CATTCATCACATCGGCCATTA-GCCATATCGC----ATA
* *
66242529 TACATTTTCATACACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--CTATATACAC
1 CACA---T-ATACA-TTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
66242591 TTTCACATTCATCACATTGGCCATTAGGCCTTAT--C--A
61 TTTCACATTCATCACATCGGCCATTA-GCCATATCGCATA
* * *
66242627 CACATATGCACTT-TCACATTCATCACTTTGGCCATTAGGCCTTATCACATATATATACATTTTC
1 CACATATACA-TTATCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATAT--A---T-
*
66242691 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--C--A
55 ATACACTTTCACATTCATCACATCGGCCATTA-GCCATATCGCATA
* * *
66242733 CATATATACACTT-TCACATTCATCACATTGGCCATTAGGCCTTATCACACATATAT
1 CACATATACA-TTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
66242789 GTATATCATA
Statistics
Matches: 322, Mismatches: 20, Indels: 47
0.83 0.05 0.12
Matches are distributed among these distances:
94 40 0.12
95 1 0.00
96 2 0.01
97 1 0.00
98 4 0.01
99 8 0.02
100 84 0.26
102 4 0.01
104 7 0.02
105 1 0.00
106 127 0.39
107 1 0.00
108 40 0.12
109 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (99 bp):
CACATATACATTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
CATTCATCACATCGGCCATTAGCCATATCGCATA
Found at i:66242591 original size:47 final size:48
Alignment explanation
Indices: 66242538--66242788 Score: 328
Period size: 47 Copynumber: 5.0 Consensus size: 48
66242528 ATACATTTTC
*
66242538 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-CTAT
1 ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACACTAT
66242585 ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAC-AT
1 ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACACTAT
* * *
66242632 ATGCACTTTCACATTCATCACTTTGGCCATTAGGCCTTATCACATATATATACATTTT
1 ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--------AC--TAT
*
66242690 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TAT
1 -ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACACTAT
66242738 ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACACATAT
1 ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAC-TAT
66242787 AT
1 AT
66242789 GTATATCATA
Statistics
Matches: 180, Mismatches: 9, Indels: 28
0.83 0.04 0.13
Matches are distributed among these distances:
47 128 0.71
48 3 0.02
49 5 0.03
51 1 0.01
55 2 0.01
58 1 0.01
59 40 0.22
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
ATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACACTAT
Found at i:66242681 original size:153 final size:153
Alignment explanation
Indices: 66242379--66242787 Score: 674
Period size: 153 Copynumber: 2.6 Consensus size: 153
66242369 TCACATATAT
* * *
66242379 ATACACTTTCACATTCCTCACATCGGCCATTAGGCCTTATCGCATATATATATACATTTTCACAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--C--ACATATATACACTTTCACAT
* * *
66242444 TCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCAT
62 TCATCACATTGGCCATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCAT
66242509 TAGGCCTTATCACATATATATACATTTTC
125 TAGGCCTTATCACATATATATACATTTTC
*
66242538 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACCTATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
* * *
66242603 CACATTGGCCATTAGGCCTTATCACACATATGCACTTTCACATTCATCACTTTGGCCATTAGGCC
66 CACATTGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66242668 TTATCACATATATATACATTTTC
131 TTATCACATATATATACATTTTC
66242691 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
66242756 CACATTGGCCATTAGGCCTTATCACACATATA
66 CACATTGGCCATTAGGCCTTATCACACATATA
66242788 TGTATATCAT
Statistics
Matches: 238, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
153 153 0.64
155 45 0.19
157 1 0.00
159 39 0.16
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (153 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
CACATTGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATATACATTTTC
Found at i:66258900 original size:6 final size:6
Alignment explanation
Indices: 66258882--66259020 Score: 79
Period size: 6 Copynumber: 22.3 Consensus size: 6
66258872 AAGAAATATT
* * *
66258882 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
66258931 ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
66258981 ATCAGA ATCAGT ATCAGA TAACAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA -ATCAGA ATC-AGA ATCAGA AT
66259021 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 26
0.68 0.14 0.18
Matches are distributed among these distances:
5 5 0.05
6 74 0.74
7 18 0.18
8 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:66258924 original size:25 final size:25
Alignment explanation
Indices: 66258896--66258988 Score: 141
Period size: 25 Copynumber: 3.7 Consensus size: 25
66258886 GAACTAGAAT
*
66258896 CAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
66258921 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
* * *
66258946 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATTAGGTGA
*
66258971 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
66258989 CAGTATCAGA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:66258984 original size:31 final size:32
Alignment explanation
Indices: 66258949--66259020 Score: 128
Period size: 31 Copynumber: 2.3 Consensus size: 32
66258939 TAGGTGACAG
*
66258949 AATCAGAATCAGTATCAGGTAACAGAATC-AA
1 AATCAGAATCAGTATCAGATAACAGAATCAAA
66258980 AATCAGAATCAGTATCAGATAACAGAATCAAA
1 AATCAGAATCAGTATCAGATAACAGAATCAAA
66259012 AATCAGAAT
1 AATCAGAAT
66259021 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 28 0.72
32 11 0.28
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.19
Consensus pattern (32 bp):
AATCAGAATCAGTATCAGATAACAGAATCAAA
Found at i:66259007 original size:19 final size:19
Alignment explanation
Indices: 66258952--66259009 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
66258942 GTGACAGAAT
*
66258952 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGATAA
66258971 CAGAATCA--A--A-AT--
1 CAGAATCAGTATCAGATAA
66258983 CAGAATCAGTATCAGATAA
1 CAGAATCAGTATCAGATAA
66259002 CAGAATCA
1 CAGAATCA
66259010 AAAATCAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
12 8 0.26
14 2 0.06
15 1 0.03
16 1 0.03
17 3 0.10
19 16 0.52
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGATAA
Found at i:66259008 original size:25 final size:25
Alignment explanation
Indices: 66258896--66259009 Score: 131
Period size: 25 Copynumber: 4.6 Consensus size: 25
66258886 GAACTAGAAT
* * *
66258896 CAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
66258921 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
66258946 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
66258971 CAGAATCAAAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
66258995 CAGATAACAGAATCA
1 CAGA-ATCAGAATCA
66259010 AAAATCAGAA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
24 7 0.09
25 72 0.91
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:66259220 original size:27 final size:26
Alignment explanation
Indices: 66259160--66259236 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 26
66259150 CAGTTATTAG
* * * *
66259160 ATATTGTGACAGAGTCACCAGTTACAG
1 ATATTGTGGCAGAGCCACCAG-AACAA
66259187 ATATTGTGGCAGAGCCACCAGAACAA
1 ATATTGTGGCAGAGCCACCAGAACAA
*
66259213 ATATTTGTGGCATAGCCACCAGAA
1 ATA-TTGTGGCAGAGCCACCAGAA
66259237 ACAGAGAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 6 0.14
27 38 0.86
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (26 bp):
ATATTGTGGCAGAGCCACCAGAACAA
Found at i:66259248 original size:27 final size:27
Alignment explanation
Indices: 66259185--66259258 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
66259175 CACCAGTTAC
*
66259185 AGATATTGTGGCAGAGCCACCAGAACAA
1 AGATA-TGTGGCAAAGCCACCAGAACAA
* * * *
66259213 ATATTTGTGGCATAGCCACCAGAAACAG
1 AGATATGTGGCAAAGCCACCAG-AACAA
66259241 AGA-ATGTGGCAAAGCCAC
1 AGATATGTGGCAAAGCCAC
66259259 TTAACAGAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 29 0.76
28 9 0.24
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
AGATATGTGGCAAAGCCACCAGAACAA
Found at i:66259966 original size:27 final size:27
Alignment explanation
Indices: 66259926--66260308 Score: 443
Period size: 27 Copynumber: 14.3 Consensus size: 27
66259916 TACCCCACAA
* * *
66259926 GGTATCTCGGTAATT-TCACCCCACAGG
1 GGTATTTCGATAATTCT-ACCCTACAGG
**
66259953 GGTATTTTAATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
66259980 GGAATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
66260007 GGTATTACGATAATTCTACGCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
66260034 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
66260061 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
66260088 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
66260115 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
66260142 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * *
66260169 GGTATTCCGGTAATTCTACCCTAC-GC
1 GGTATTTCGATAATTCTACCCTACAGG
* * * *
66260195 GGTATTCCGGTAATTTTACCCTACAAG
1 GGTATTTCGATAATTCTACCCTACAGG
* * **
66260222 GGTATTTCGGTAATTTTA-CAAACTAGG
1 GGTATTTCGATAATTCTACCCTAC-AGG
* * *** *
66260249 GGTATTT-GGTAATTTTACAAAATAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
66260275 GGTATTTTG-TAATTCTATCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
66260301 GGTATTTC
1 GGTATTTC
66260309 AGTAATTTCA
Statistics
Matches: 315, Mismatches: 36, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
26 65 0.21
27 249 0.79
28 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:66260259 original size:26 final size:26
Alignment explanation
Indices: 66260221--66260288 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
66260211 TACCCTACAA
*
66260221 GGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTT-GGTAATTTTACAAAATAG
66260248 GGGTATTTGGTAATTTTACAAAATAG
1 GGGTATTTGGTAATTTTACAAAATAG
*
66260274 GGGTATTTTGTAATT
1 GGGTATTTGGTAATT
66260289 CTATCCTACA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 31 0.79
27 8 0.21
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTACAAAATAG
Found at i:66260354 original size:27 final size:27
Alignment explanation
Indices: 66260310--66260516 Score: 249
Period size: 27 Copynumber: 7.7 Consensus size: 27
66260300 GGGTATTTCA
* * *
66260310 GTAATTTCAT-AATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
66260336 GTAATTTTGTAAA-CAGAGGGCAAAATG
1 GTAATTTTATAAATC-GAGGGTAAAATG
*
66260363 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAATG
*
66260390 GTAATTTT-TAATTCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
66260416 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * * *
66260443 GTAATTTTGTAAATCGAGGATGAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
66260470 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
66260497 GTAATTCTACAAATCGAGGG
1 GTAATTTTATAAATCGAGGG
66260517 CATTTCAGTA
Statistics
Matches: 154, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
26 31 0.20
27 122 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:66260528 original size:81 final size:80
Alignment explanation
Indices: 66260324--66260536 Score: 239
Period size: 80 Copynumber: 2.6 Consensus size: 80
66260314 TTTCATAATT
* * ** ** * *
66260324 GAGGGTAAAACGGTAATTTTGTAAA-CAGAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAA
1 GAGGGTAAAATGGTAATTCTACAAATC-GAGGGCAAAACAGTAATTTTGTAAATCGAGGATAAAA
* *
66260388 TAGTAATTTTTAATTC
65 CAGTAATTTTTAAATC
* * * *
66260404 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGATGAAAC
1 GAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAACAGTAATTTTGTAAATCGAGGATAAAAC
*
66260469 GGTAATTTTATAAATC
66 AGTAATTTT-TAAATC
***
66260485 GAGGGTAAAATGGTAATTCTACAAATCGAGGGCATTTCAGTAATTTTGTAAA
1 GAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAACAGTAATTTTGTAAA
66260537 CCAATGGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 62 0.54
81 52 0.46
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (80 bp):
GAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAACAGTAATTTTGTAAATCGAGGATAAAAC
AGTAATTTTTAAATC
Found at i:66260548 original size:27 final size:28
Alignment explanation
Indices: 66260513--66260614 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 28
66260503 CTACAAATCG
*
66260513 AGGGCATTTCAGTAATTTTGTAAA-CCA
1 AGGGTATTTCAGTAATTTTGTAAAGCCA
* *
66260540 ATGGTATTTCTA-TAATTTT-TAGAAAGTCA
1 AGGGTATTTC-AGTAATTTTGT--AAAGCCA
* *
66260569 AGGGTATTTCTGTAATTTTGTAAA-TCA
1 AGGGTATTTCAGTAATTTTGTAAAGCCA
* **
66260596 GGGGTATTTTGGTAATTTT
1 AGGGTATTTCAGTAATTTT
66260615 ACAAATTGAG
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
26 1 0.02
27 34 0.56
28 7 0.11
29 18 0.30
30 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (28 bp):
AGGGTATTTCAGTAATTTTGTAAAGCCA
Found at i:66260728 original size:27 final size:27
Alignment explanation
Indices: 66260570--66260721 Score: 166
Period size: 27 Copynumber: 5.6 Consensus size: 27
66260560 AGAAAGTCAA
**
66260570 GGGTATTTCT-GTAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AG
*
66260597 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
66260623 AGGGTATCTCGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
66260651 TGGTTTTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
66260678 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
66260705 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
66260722 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.02
27 101 0.96
28 2 0.02
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:66262685 original size:6 final size:6
Alignment explanation
Indices: 66262674--66262809 Score: 73
Period size: 6 Copynumber: 21.8 Consensus size: 6
66262664 TATCAAAACT
* * * *
66262674 AGAATC AGAATC AGAATC AAAATT AG-GTGAC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
66262723 AG-GTGAC AGAATC AGAATC AAAATC AGTATC AGGTAA-C AGAATC AAAATC
1 AGAAT--C AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
66262773 AGAATC AGTATC AGGTAA-C AGAATC AAAAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC -AGAATC AGAAT
66262810 GTGAATGGAA
Statistics
Matches: 97, Mismatches: 20, Indels: 26
0.68 0.14 0.18
Matches are distributed among these distances:
5 6 0.06
6 72 0.74
7 15 0.15
8 4 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:66262710 original size:25 final size:25
Alignment explanation
Indices: 66262679--66262746 Score: 127
Period size: 25 Copynumber: 2.7 Consensus size: 25
66262669 AAACTAGAAT
66262679 CAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAAAATTAGGTGA
*
66262704 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAAAATTAGGTGA
66262729 CAGAATCAGAATCAAAAT
1 CAGAATCAGAATCAAAAT
66262747 CAGTATCAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAAAATTAGGTGA
Found at i:66262710 original size:31 final size:31
Alignment explanation
Indices: 66262674--66262809 Score: 140
Period size: 31 Copynumber: 4.5 Consensus size: 31
66262664 TATCAAAACT
* *
66262674 AGAATCAGAATCAGAATCAAAATTAGGT---
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
66262702 -G-A-CAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
66262730 AGAATCAGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
66262761 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
66262792 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
66262810 GTGAATGGAA
Statistics
Matches: 94, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
25 22 0.23
26 1 0.01
27 1 0.01
29 1 0.01
30 1 0.01
31 57 0.61
32 11 0.12
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:66262798 original size:25 final size:25
Alignment explanation
Indices: 66262679--66262774 Score: 88
Period size: 25 Copynumber: 3.8 Consensus size: 25
66262669 AAACTAGAAT
* * *
66262679 CAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
66262704 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
66262729 CAGAATCAGAATCAAAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
66262753 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
66262775 AATCAGTATC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.06
25 57 0.90
26 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Done.