Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 223 of 328
Found at i:66947276 original size:48 final size:48
Alignment explanation
Indices: 66947203--66947875 Score: 1037
Period size: 48 Copynumber: 14.0 Consensus size: 48
66947193 TACAAGATAC
* *
66947203 ATATATATATGTGTAGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATATATATGTG--GTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66947253 ATATGTATATGTGGTAAAGCCGAAT-GCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66947300 ATATGTATATGTGGTAAAGCCGAATGGCTAA-ATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66947347 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATACGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66947395 ATATATATGTGTAGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66947443 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66947491 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66947539 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66947587 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGT-AAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66947634 ATATGTATATGTCGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66947682 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66947730 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66947778 ATATGTATATGTGGTAAACCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66947826 ATATATATATTTGGTAAAGTCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
66947874 AT
1 AT
66947876 GTGTGTATAT
Statistics
Matches: 577, Mismatches: 43, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
47 134 0.23
48 431 0.75
50 12 0.02
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:66947720 original size:287 final size:287
Alignment explanation
Indices: 66947203--66947875 Score: 1089
Period size: 287 Copynumber: 2.3 Consensus size: 287
66947193 TACAAGATAC
* *
66947203 ATATATATATGTGTAGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGT
1 ATATATATATGTG--GTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGT
*
66947268 AAAGCCGAAT-GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAA
64 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAA
* *
66947332 TGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATACGAGAT
129 TGAAATATGTATGAGATATATATATGTCGTAAAGCCGAATGGCTAATATGAAATATATACGAGAT
* * *
66947397 ATATATGTGTAGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAG
194 ATATATATGTAGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAG
66947462 CCGAATGGCTAATATGAAATATGTATGAG
259 CCGAATGGCTAATATGAAATATGTATGAG
* *
66947491 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGTAA
* *
66947556 AGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AGTG
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAATG
* * *
66947620 TAAATATGTATGAGATATGTATATGTCGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATA
131 -AAATATGTATGAGATATATATATGTCGTAAAGCCGAATGGCTAATATGAAATATATACGAGATA
*
66947685 TATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGC
195 TATATATGTAGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGC
* * *
66947750 TGAATGGCTAGTGTGAAATATGTATGAG
260 CGAATGGCTAATATGAAATATGTATGAG
* * *
66947778 ATATGTATATGTGGTAAACCCGAATGGCTAGTGTGAAATATGTATGAGATATATATATTTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGTAA
* *
66947843 AGTCGAATGGCTAATGTGAAATATGTAGGAGAT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGAT
66947876 GTGTGTATAT
Statistics
Matches: 356, Mismatches: 27, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
286 59 0.17
287 284 0.80
288 13 0.04
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (287 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAATG
AAATATGTATGAGATATATATATGTCGTAAAGCCGAATGGCTAATATGAAATATATACGAGATAT
ATATATGTAGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATATGAAATATGTATGAG
Found at i:66948065 original size:37 final size:37
Alignment explanation
Indices: 66948015--66948117 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
66948005 GGAAATATAT
66948015 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
66948052 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
66948089 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
66948118 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:66949494 original size:40 final size:40
Alignment explanation
Indices: 66949396--66949705 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
66949386 GAGAATTGAG
*
66949396 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
66949436 AGT-ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66949475 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66949515 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66949555 AGTGATATATCCGGGCTAAG-CCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
66949594 AGTGATATACCCGGGCTAAGTCTTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
66949634 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
66949674 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
66949706 ATCATGCCGG
Statistics
Matches: 252, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 77 0.31
40 175 0.69
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:66949579 original size:79 final size:80
Alignment explanation
Indices: 66949396--66949705 Score: 498
Period size: 79 Copynumber: 3.9 Consensus size: 80
66949386 GAGAATTGAG
* *
66949396 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGT-ATATATCCAGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
66949460 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
66949475 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
66949540 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* **
66949555 AGTGATATATCCGGGCTAAG-CCCGAAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCTTG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
66949619 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * * * *
66949634 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
66949699 AAGAGCA
66 AAGAGCA
66949706 ATCATGCCGG
Statistics
Matches: 214, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
79 114 0.53
80 100 0.47
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:66949608 original size:119 final size:120
Alignment explanation
Indices: 66949396--66949705 Score: 498
Period size: 119 Copynumber: 2.6 Consensus size: 120
66949386 GAGAATTGAG
* *
66949396 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGT-ATATATCCAGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
66949460 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66949515 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAG-CCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
**
66949579 AAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCTTGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * * *
66949634 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
66949699 AAGAGCA
66 AAGAGCA
66949706 ATCATGCCGG
Statistics
Matches: 177, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
119 151 0.85
120 26 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:66949719 original size:159 final size:159
Alignment explanation
Indices: 66949396--66949719 Score: 488
Period size: 159 Copynumber: 2.0 Consensus size: 159
66949386 GAGAATTGAG
*
66949396 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTATATATCCAGGCTAAGTCCCGA
1 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTATATACCCAGGCTAAGTCCCGA
* *
66949461 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
66 AGAGCATTCGTGCTAGAGATATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* * *
66949526 CGGGCTAAGTCCCGAAGAGCATTCGTGCT
131 CGGGCTAAGTCCCGAAGAGCAATCATGCC
* * **
66949555 AGTGATATATCCGGGCTAAG-CCCGAAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCTTG
1 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGT-ATATACCCAGGCTAAGTCCCG
* * * *
66949619 AAGAGCATTCGTGCTAGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
65 AAGAGCATTCGTGCTAGAGATATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
66949684 CCGGGCTAGGTCCCGAAGAGCAATCATGCC
130 CCGGGCTAAGTCCCGAAGAGCAATCATGCC
*
66949714 GGTGAT
1 AGTGAT
66949720 GTGTATTCGG
Statistics
Matches: 148, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
158 22 0.15
159 126 0.85
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (159 bp):
AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTATATACCCAGGCTAAGTCCCGA
AGAGCATTCGTGCTAGAGATATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
CGGGCTAAGTCCCGAAGAGCAATCATGCC
Found at i:66949931 original size:25 final size:25
Alignment explanation
Indices: 66949881--66949931 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
66949871 TCTGTAACAA
* *
66949881 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
66949906 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
66949931 C
1 C
66949932 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:66954103 original size:239 final size:238
Alignment explanation
Indices: 66953683--66954538 Score: 1464
Period size: 239 Copynumber: 3.6 Consensus size: 238
66953673 CAAGATAAAT
* *
66953683 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATGTATATGTGGTAA
1 ATAT-TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
66953748 AGCCGAATGGCTAGTGTGAAATATGTATGA-ATATGTATATGTGGTAAAGCCGAATGGCTAATAT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
* * *
66953812 GAAATATGTATGAGATATATATATTTGGTAAAGCCGAATGGCTAAAATGAAATATGTATAAGATA
130 GAAATATGTAT-AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATA
*
66953877 TATATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
194 TATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
66953922 ATA-TATATGTGTGTAAAGCCGAATGGCTAGTGTGATATATGTATGAGATATTTATATGTGGTAA
1 ATATTATATGTG-GTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
66953986 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATAT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
66954051 GAAATATGTATAAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATA
130 GAAATATGTAT-AGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATA
66954116 TATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
194 TATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
66954161 ATATTTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTAGTAA
1 ATA-TTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * * *
66954226 AGTCGAATGGCGAATATGAAATATGTATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATAT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
*
66954291 GAAATATGTATAGATACATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATAT
130 GAAATATGTATAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATAT
*
66954356 ATATATGTGGTAAAGCCGAATGGCTAATGTGAATTATATATGAG
195 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
66954400 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATAT-TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* * *
66954465 GGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATTTGGTAAAGCCGAATGGCTAATGT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATAT
66954530 GAAATATGT
130 GAAATATGT
66954539 GGGAGATGTG
Statistics
Matches: 584, Mismatches: 28, Indels: 10
0.94 0.05 0.02
Matches are distributed among these distances:
237 7 0.01
238 82 0.14
239 368 0.63
240 119 0.20
241 8 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (238 bp):
ATATTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAA
GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG
AAATATGTATAGATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATA
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:66954256 original size:11 final size:11
Alignment explanation
Indices: 66954240--66954264 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
66954230 GAATGGCGAA
66954240 TATGAAATATG
1 TATGAAATATG
66954251 TATGAAATATG
1 TATGAAATATG
66954262 TAT
1 TAT
66954265 ATGTGGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (11 bp):
TATGAAATATG
Found at i:66954301 original size:37 final size:37
Alignment explanation
Indices: 66954251--66954348 Score: 106
Period size: 47 Copynumber: 2.4 Consensus size: 37
66954241 ATGAAATATG
66954251 TATGAAATATGTATATGTGGTAAAGCCGAATGGCTAA
1 TATGAAATATGTATATGTGGTAAAGCCGAATGGCTAA
66954288 TATGAAATATGTATAGATACATATATGTGGTAAAGCCGAATGGCTAA
1 TATG-AA-A--TAT-G-----TATATGTGGTAAAGCCGAATGGCTAA
66954335 TATGAAATATGTAT
1 TATGAAATATGTAT
66954349 GAGATATATA
Statistics
Matches: 51, Mismatches: 0, Indels: 20
0.72 0.00 0.28
Matches are distributed among these distances:
37 7 0.14
38 2 0.04
39 1 0.02
41 3 0.06
42 2 0.04
43 3 0.06
45 1 0.02
46 2 0.04
47 30 0.59
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (37 bp):
TATGAAATATGTATATGTGGTAAAGCCGAATGGCTAA
Found at i:66954545 original size:48 final size:48
Alignment explanation
Indices: 66953683--66954538 Score: 1288
Period size: 48 Copynumber: 17.9 Consensus size: 48
66953673 CAAGATAAAT
* * * *
66953683 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66953731 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA-
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66953778 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * ** *
66953826 ATATATATATTTGGTAAAGCCGAATGGCTAAAATGAAATATGTATAAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66953874 ATATATATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66953922 ATA--TATATGTGTGTAAAGCCGAATGGCTAGTGTGATATATGTATGAG
1 ATATGTATATGTG-GTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66953969 ATATTTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66954017 ATATGTATATGTGGTAAAGTCGAATGGCTAATATGAAATATGTATAAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66954065 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66954113 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66954161 ATATTTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * *
66954209 ATATGTATATGTAGTAAAGTCGAATGGCGAATATGAAATATGTATGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66954257 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTAT-AG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
66954304 ATACATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
66954352 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAATTATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66954400 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
66954448 ATATGTATATGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
66954496 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
66954539 GGGAGATGTG
Statistics
Matches: 746, Mismatches: 57, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
46 7 0.01
47 124 0.17
48 607 0.81
49 8 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:66954736 original size:37 final size:37
Alignment explanation
Indices: 66954686--66954788 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
66954676 GGAAATATAT
66954686 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
66954723 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
66954760 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
66954789 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:66958976 original size:17 final size:16
Alignment explanation
Indices: 66958953--66958984 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
66958943 GTTGTAATAC
66958953 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
66958969 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
66958985 TCTCAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.38, G:0.06, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:66960247 original size:16 final size:16
Alignment explanation
Indices: 66960206--66960241 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66960196 GTAGATTGGC
* *
66960206 AAATCCCGAAAAGCTA
1 AAATACCGAAAAGCCA
66960222 AAATACCGAAAAGCCA
1 AAATACCGAAAAGCCA
66960238 AAAT
1 AAAT
66960242 GTCGAAGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.11, T:0.11
Consensus pattern (16 bp):
AAATACCGAAAAGCCA
Found at i:66960541 original size:28 final size:28
Alignment explanation
Indices: 66960451--66960554 Score: 77
Period size: 28 Copynumber: 3.7 Consensus size: 28
66960441 TAAATTTGAT
* * * *
66960451 TTGGGCCTAGT-GGACATATGAATGTGGT
1 TTGGGCCTAATGGGACATATGAAAG-AGA
* * *
66960479 TTGGGCCTAATGGGCCACAT-AAATGTGA
1 TTGGGCCTAATGGGACATATGAAA-GAGA
* *
66960507 ATAGGCCTAATGGGACATATGAAAGAGA
1 TTGGGCCTAATGGGACATATGAAAGAGA
* *
66960535 TTGGGCCTAGTGGGCCATAT
1 TTGGGCCTAATGGGACATAT
66960555 ATATAGGTAT
Statistics
Matches: 58, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
28 48 0.83
29 10 0.17
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGACATATGAAAGAGA
Found at i:66961984 original size:28 final size:28
Alignment explanation
Indices: 66961919--66961990 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 28
66961909 ATAGTGAATC
*
66961919 CGCACACTTAGTGCTATATGTATTCAACT
1 CGCACACTTAGTGCTATA-GTAATCAACT
66961948 CGCACACTTAGTGCTATA-TAATCAAACT
1 CGCACACTTAGTGCTATAGTAATC-AACT
66961976 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66961991 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 4 0.10
28 19 0.46
29 18 0.44
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGTAATCAACT
Found at i:66969005 original size:28 final size:28
Alignment explanation
Indices: 66968936--66969036 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
66968926 GACAAGATTG
* * * *
66968936 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
66968966 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
66968994 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
66969023 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66969037 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:66975434 original size:28 final size:28
Alignment explanation
Indices: 66975369--66975469 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
66975359 ATAGTGAATC
*
66975369 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
66975398 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
66975426 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
66975456 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66975470 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:66978338 original size:43 final size:42
Alignment explanation
Indices: 66978284--66978395 Score: 111
Period size: 42 Copynumber: 2.6 Consensus size: 42
66978274 ATATCGTACA
* * ** *
66978284 ATGCCAATGTCCCAGACGTAGTCTTACATGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACA-CAAATCACACATCG
* *
66978327 ATGCCACTGTCCTAGACAG-GGTCTTACACAAATCACACATTG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACAAATCACACATCG
*
66978369 ATGCCAAC-GTCCCAGATGTGGTCTTAC
1 ATGCC-ACTGTCCCAGACGTGGTCTTAC
66978396 CTAAGAACAC
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.02
42 30 0.53
43 25 0.44
44 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACAAATCACACATCG
Found at i:66980124 original size:43 final size:43
Alignment explanation
Indices: 66980063--66980214 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 43
66980053 CATCCTAGAC
* *
66980063 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
* * * *
66980106 GTCTTACATGAAATCAAATA-CGATATCGA-TGTCCCAGACATG
1 GTCTTACACGAAATCAAATATCGAT-GCCACTGTCCCAGACAGG
*
66980148 GTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGAC-GTG
1 GTCTTACACG-AAATCA-AATATCGATGCC-ACTGTCCCAGACAG-G
* *
66980192 GTCTTACACCAAATCACATATCG
1 GTCTTACACGAAATCAAATATCG
66980215 GATCCTATGT
Statistics
Matches: 89, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
42 26 0.29
43 37 0.42
44 26 0.29
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
Found at i:66980152 original size:42 final size:41
Alignment explanation
Indices: 66980063--66980199 Score: 132
Period size: 44 Copynumber: 3.2 Consensus size: 41
66980053 CATCCTAGAC
* * *
66980063 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACATGAAATCAAATA-CGAT-CCAATGTCCCAGACATG
* *
66980106 GTCTTACATGAAATCAAATACGATATCGATGTCCCAGACATG
1 GTCTTACATGAAATCAAATACGAT-CCAATGTCCCAGACATG
* * *
66980148 GTCTTACACGTAAATCATAAGT-CGATGCCAACGTCCCAGACGTG
1 GTCTTACATG-AAATCA-AA-TACGAT-CCAATGTCCCAGACATG
66980192 GTCTTACA
1 GTCTTACA
66980200 CCAAATCACA
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
42 26 0.33
43 25 0.32
44 27 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
GTCTTACATGAAATCAAATACGATCCAATGTCCCAGACATG
Found at i:66987742 original size:42 final size:42
Alignment explanation
Indices: 66987641--66987811 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 42
66987631 AGCTCGTACA
* * * *
66987641 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCTAGACATGGTCTTACAGGAAATCAAATATCG
*
66987684 ATGCCACTGTCCTAGACAAGGTCTTACAGGAAATCAAATAT-G
1 ATGCCA-TGTCCTAGACATGGTCTTACAGGAAATCAAATATCG
** *
66987726 ATGCCGATGTCCTAGACATGGTCTTACACATAAATCACAA-CTCG
1 ATGCC-ATGTCCTAGACATGGTCTTACA-GGAAATCA-AATATCG
** ** * *
66987770 ATGCCAACATCCTAGATGTGGTCTTACACGAAATCACATATC
1 ATGCC-ATGTCCTAGACATGGTCTTACAGGAAATCAAATATC
66987812 AGATCCTATG
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.27
43 50 0.48
44 26 0.25
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCATGTCCTAGACATGGTCTTACAGGAAATCAAATATCG
Found at i:66987785 original size:86 final size:85
Alignment explanation
Indices: 66987641--66987810 Score: 191
Period size: 86 Copynumber: 2.0 Consensus size: 85
66987631 AGCTCGTACA
* ** *
66987641 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCTAGACAAGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCAAATATCGATGCCACTATCCTAGACAAGGT
*
66987706 CTTACAGGAAATCAAATATG
66 CTTACACGAAATCAAATATG
* * * ***
66987726 ATGCCGATGTCCTAGACATGGTCTTACACATAAATCACAA-CTCGATGCCAAC-ATCCTAGATGT
1 ATGCCAATGTCCCAGACATGGTCTTACACAT-AATCA-AATATCGATGCC-ACTATCCTAGACAA
*
66987789 GGTCTTACACGAAATCACATAT
63 GGTCTTACACGAAATCAAATAT
66987811 CAGATCCTAT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
85 26 0.37
86 40 0.57
87 4 0.06
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCAAATATCGATGCCACTATCCTAGACAAGGT
CTTACACGAAATCAAATATG
Found at i:66991110 original size:47 final size:47
Alignment explanation
Indices: 66990853--66991165 Score: 249
Period size: 47 Copynumber: 6.7 Consensus size: 47
66990843 ATTGTGAGTG
* * * *
66990853 AGTGTAAGGCCATGTCTGGGATATGGCATCGGTA-TTGA-GACGA-GTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATG--GATGAGCC
* * *
66990901 AGTGTAA-AACATGTCTGAGACAT-GCATCGGCCTTGA--GATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATG--AGCC
* * *
66990947 AGTGTAAGA-CATGTCTGGGACAT-GCATC-AGC-T-ACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGATG-GATGAGCC
* * *
66990991 ATTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTG--ATG-GATGAGCC
*
66991041 AGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
* * *
66991088 AGTGTCAGACCATGTTTGGGACATGGCATCGACTTGATGGATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
66991135 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
66991166 GTATTATACC
Statistics
Matches: 218, Mismatches: 28, Indels: 39
0.76 0.10 0.14
Matches are distributed among these distances:
43 3 0.01
44 12 0.06
45 15 0.07
46 49 0.22
47 92 0.42
48 10 0.05
49 3 0.01
50 30 0.14
51 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
Found at i:66996352 original size:47 final size:47
Alignment explanation
Indices: 66996296--66996438 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
66996286 GTTGAATTTA
* * *
66996296 AAGCTTGTTAACTTTTCTCTTAATATTTTCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
66996343 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* *
66996390 AAGCTTGTTAAATTTGCTCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
66996437 AA
1 AA
66996439 AGAAAATTTT
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
Found at i:66997364 original size:45 final size:45
Alignment explanation
Indices: 66997246--66997648 Score: 684
Period size: 45 Copynumber: 9.0 Consensus size: 45
66997236 ATATCGTACA
66997246 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
66997291 ATACTATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
66997335 ATACTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
66997380 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
66997425 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
66997470 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* * * *
66997515 ATACTATTTGGGCCTTTGAGCCTAGCAAGCTATAATGACGATGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
** * *
66997560 ATACTATTCGGGCCTTCAAGCCTAGTAGGCTATAATACCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
66997605 ATACTATTCGGG-CTTTCGAGGCTAGCAGGCTATAATGCCGGTGA
1 ATACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
66997649 AATGATATCG
Statistics
Matches: 337, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
44 47 0.14
45 290 0.86
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:67014442 original size:16 final size:18
Alignment explanation
Indices: 67014411--67014443 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
67014401 AACTCATCAC
67014411 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
67014429 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
67014444 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:67020464 original size:47 final size:47
Alignment explanation
Indices: 67020408--67020597 Score: 326
Period size: 47 Copynumber: 4.0 Consensus size: 47
67020398 GTTGAATTTA
67020408 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* *
67020455 AAGCTTGTTAAATTTGCTCTTAATATTTCCCGACAATTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
*
67020502 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAATTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* * *
67020549 AAGCTTGTTAAATTTGCTCTTATTATTTTCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
67020596 AA
1 AA
67020598 AGAAAATTTT
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 136 1.00
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
Found at i:67021479 original size:45 final size:45
Alignment explanation
Indices: 67021415--67021622 Score: 314
Period size: 45 Copynumber: 4.7 Consensus size: 45
67021405 ATATCGTACA
* * *
67021415 ATACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAG
* *
67021460 ATACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAG
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAG
67021505 ATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAG
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAG
* *
67021550 ATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
1 ATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAG
*
67021595 ATGA-TA-TCGAG-CTTCGAGCCTAGCAGGC
1 AT-ACTATTCGGGCCTTCGAGCCTAGCAGGC
67021623 GAAATGCTGG
Statistics
Matches: 156, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
43 17 0.11
44 4 0.03
45 134 0.86
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (45 bp):
ATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAG
Found at i:67022395 original size:23 final size:23
Alignment explanation
Indices: 67022359--67022459 Score: 107
Period size: 23 Copynumber: 4.3 Consensus size: 23
67022349 GTGTTACAAA
* *
67022359 TAAGCTCT-ATTGAGCTAAAATAG
1 TAAGCTCTGA-TGAGCTGAAACAG
* *
67022382 TAAGCTTTGATGAGTTGAAACAG
1 TAAGCTCTGATGAGCTGAAACAG
*
67022405 TAAGCTCTGACGAGCTGAAACAG
1 TAAGCTCTGATGAGCTGAAACAG
*
67022428 TAAGCTCAT-ACGAGCTGAGAACAG
1 TAAGCTC-TGATGAGCTGA-AACAG
67022452 TAAGCTCT
1 TAAGCTCT
67022460 TACGAGTTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
23 54 0.79
24 14 0.21
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (23 bp):
TAAGCTCTGATGAGCTGAAACAG
Found at i:67022459 original size:47 final size:50
Alignment explanation
Indices: 67022400--67022493 Score: 131
Period size: 47 Copynumber: 1.9 Consensus size: 50
67022390 GATGAGTTGA
*
67022400 AACAGTAAGCTCTGACGAGCTGA-A-A-CAGTAAGCTCATACGAGCTGAG
1 AACAGTAAGCTCTGACGAGCTAATATATCAGTAAGCTCATACGAGCTGAG
* * *
67022447 AACAGTAAGCTCTTACGAGTTAATATATCAGTAAGCTCATATGAGCT
1 AACAGTAAGCTCTGACGAGCTAATATATCAGTAAGCTCATACGAGCT
67022494 ACGGTGTGTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
47 20 0.50
48 1 0.03
49 1 0.03
50 18 0.45
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (50 bp):
AACAGTAAGCTCTGACGAGCTAATATATCAGTAAGCTCATACGAGCTGAG
Found at i:67022493 original size:50 final size:46
Alignment explanation
Indices: 67022370--67022493 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 46
67022360 AAGCTCTATT
* * *
67022370 GAGCTAAAATAGTAAGCT-TTGATGAGTTGAAACAGTAAGCTCTGAC
1 GAGCTAAAACAGTAAGCTCAT-ATGAGCTGAAACAGTAAGCTCTGAC
* * *
67022416 GAGCTGAAACAGTAAGCTCATACGAGCTGAGAACAGTAAGCTCTTAC
1 GAGCTAAAACAGTAAGCTCATATGAGCTGA-AACAGTAAGCTCTGAC
*
67022463 GAGTTAATATATCAGTAAGCTCATATGAGCT
1 GAGCTAA-A-A-CAGTAAGCTCATATGAGCT
67022494 ACGGTGTGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
46 23 0.36
47 21 0.33
48 1 0.02
49 1 0.02
50 18 0.28
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (46 bp):
GAGCTAAAACAGTAAGCTCATATGAGCTGAAACAGTAAGCTCTGAC
Found at i:67024428 original size:27 final size:27
Alignment explanation
Indices: 67024390--67024511 Score: 165
Period size: 27 Copynumber: 4.5 Consensus size: 27
67024380 GCTACCTGAA
*
67024390 CCCTCATGTGATAAAATAATTGATTTT-
1 CCCTTATGTGATAAAATAA-TGATTTTG
*
67024417 CCCTTATGTGATAAAATGATGATTTTG
1 CCCTTATGTGATAAAATAATGATTTTG
* ** *
67024444 CCCTTATGTGATAAAATGACAATTTTT
1 CCCTTATGTGATAAAATAATGATTTTG
*
67024471 CCCTTATGTGATAAAATAGTGATTTTG
1 CCCTTATGTGATAAAATAATGATTTTG
67024498 CCCTTATGTGATAA
1 CCCTTATGTGATAA
67024512 GATGACCAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 7 0.08
27 77 0.92
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (27 bp):
CCCTTATGTGATAAAATAATGATTTTG
Found at i:67024477 original size:54 final size:54
Alignment explanation
Indices: 67024413--67024517 Score: 185
Period size: 54 Copynumber: 1.9 Consensus size: 54
67024403 AAATAATTGA
67024413 TTTTCCCTTATGTGATAAAAT-GATGATTTTGCCCTTATGTGATAAAATGACAAT
1 TTTTCCCTTATGTGATAAAATAG-TGATTTTGCCCTTATGTGATAAAATGACAAT
*
67024467 TTTTCCCTTATGTGATAAAATAGTGATTTTGCCCTTATGTGATAAGATGAC
1 TTTTCCCTTATGTGATAAAATAGTGATTTTGCCCTTATGTGATAAAATGAC
67024518 CAAAATACCT
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
54 48 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (54 bp):
TTTTCCCTTATGTGATAAAATAGTGATTTTGCCCTTATGTGATAAAATGACAAT
Found at i:67029185 original size:40 final size:40
Alignment explanation
Indices: 67029141--67029250 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
67029131 TTCACAATTT
* *
67029141 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
67029181 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
67029221 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
67029251 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:67035891 original size:37 final size:37
Alignment explanation
Indices: 67035838--67035959 Score: 199
Period size: 37 Copynumber: 3.3 Consensus size: 37
67035828 TATAAAAGAA
*
67035838 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
67035875 GTCTTGCCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
* *
67035912 GTCTTACCCAGTCATAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
67035949 GTCTCACCCGG
1 GTCTTACCCGG
67035960 AACATATTCC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:67036116 original size:49 final size:49
Alignment explanation
Indices: 67036061--67036274 Score: 358
Period size: 49 Copynumber: 4.4 Consensus size: 49
67036051 TTTTACATTA
67036061 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
67036110 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
67036159 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
67036208 G-CATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
67036256 GCCATTCGGCCATATCACA
1 GCCATTAGGCCTTATCACA
67036275 CATATATGTA
Statistics
Matches: 157, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 45 0.29
49 112 0.71
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:67036273 original size:97 final size:97
Alignment explanation
Indices: 67036055--67036274 Score: 352
Period size: 97 Copynumber: 2.2 Consensus size: 97
67036045 CATATATTTT
*
67036055 ACATTAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATTGGCCATTAGGCC-TATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
67036120 CTTATCACATATACATACACTTTCACATTCACC
65 CTTATCACATATACATACACTTTCACATTCACC
* *
67036153 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGG-CATTAGGC
1 ACATTGGCCATTAGGCCT-ATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
*
67036217 CTTATCACATATACATACACTTTCACATTCATC
65 CTTATCACATATACATACACTTTCACATTCACC
* *
67036250 GCATTGGCCATTCGGCCATATCACA
1 ACATTGGCCATTAGGCC-TATCACA
67036275 CATATATGTA
Statistics
Matches: 113, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
97 61 0.54
98 52 0.46
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.29
Consensus pattern (97 bp):
ACATTGGCCATTAGGCCTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCC
TTATCACATATACATACACTTTCACATTCACC
Found at i:67040723 original size:22 final size:22
Alignment explanation
Indices: 67040696--67040741 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
67040686 GCGGAGTTAA
67040696 TGGAACTCCCTTTTGGAATATT
1 TGGAACTCCCTTTTGGAATATT
67040718 TGGAACTCCCTTTTGGAATATT
1 TGGAACTCCCTTTTGGAATATT
67040740 TG
1 TG
67040742 ACTTTGTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (22 bp):
TGGAACTCCCTTTTGGAATATT
Found at i:67046100 original size:34 final size:34
Alignment explanation
Indices: 67046056--67046128 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
67046046 TCATTTCTTT
* ** *
67046056 TACTGTTACTGTAATGGGCTAAGGCCCACACTGA
1 TACTGATACTGTAATGGAATAAGGCCCACAATGA
67046090 TACTGATACTGTAATGGAATAAGGCCCACAATGA
1 TACTGATACTGTAATGGAATAAGGCCCACAATGA
67046124 TACTG
1 TACTG
67046129 GACTATCACT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (34 bp):
TACTGATACTGTAATGGAATAAGGCCCACAATGA
Found at i:67049424 original size:41 final size:41
Alignment explanation
Indices: 67049379--67049496 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67049369 TGAAAGATAA
67049379 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67049420 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67049450 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67049491 ATGTAG
1 ATGTAG
67049497 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67049435 original size:71 final size:71
Alignment explanation
Indices: 67049347--67049510 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67049337 GAGATGTATC
67049347 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67049412 AGGACA
66 AGGACA
67049418 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67049483 AGGACA
66 AGGACA
67049489 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67049511 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67060350 original size:41 final size:41
Alignment explanation
Indices: 67060305--67060422 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67060295 TGAAAGATAA
67060305 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67060346 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67060376 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67060417 ATGTAG
1 ATGTAG
67060423 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67060361 original size:71 final size:71
Alignment explanation
Indices: 67060273--67060436 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67060263 GAGATGTATC
67060273 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67060338 AGGACA
66 AGGACA
67060344 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67060409 AGGACA
66 AGGACA
67060415 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67060437 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67068265 original size:39 final size:39
Alignment explanation
Indices: 67068206--67068359 Score: 238
Period size: 39 Copynumber: 3.9 Consensus size: 39
67068196 ACCGCGCAAA
* *
67068206 TGCCTTCGGGACTTA-ACCGGATATCACAACTCGTACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* * *
67068245 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
67068284 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
67068323 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
67068360 TTCATACACA
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
38 4 0.04
39 101 0.96
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:67080250 original size:20 final size:20
Alignment explanation
Indices: 67080227--67080264 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67080217 CACATCCAAA
*
67080227 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
67080247 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
67080265 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:67084653 original size:18 final size:19
Alignment explanation
Indices: 67084632--67084668 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
67084622 GTGTTAGTAG
67084632 TGATAAT-AGTTTTTATCT
1 TGATAATAAGTTTTTATCT
*
67084650 TGATAATAATTTTTTATCT
1 TGATAATAAGTTTTTATCT
67084669 AAGAAATCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (19 bp):
TGATAATAAGTTTTTATCT
Found at i:67088554 original size:20 final size:20
Alignment explanation
Indices: 67088529--67088566 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67088519 GTAACATATA
67088529 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
67088549 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
67088567 TAGTTTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:67090187 original size:21 final size:22
Alignment explanation
Indices: 67090154--67090194 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
67090144 TTCATTTATG
*
67090154 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
67090175 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
67090195 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:67090678 original size:28 final size:28
Alignment explanation
Indices: 67090604--67090678 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 28
67090594 GAATCATTCG
* *
67090604 ATATTTCGTACACTAAGTCTCATTGTCA
1 ATATTTCGTACACTAAGTGTCATTCTCA
* * *
67090632 ATATCTCGCACACAAAGTGTCATTCTCA
1 ATATTTCGTACACTAAGTGTCATTCTCA
* *
67090660 ATATTTCATACACTGAGTG
1 ATATTTCGTACACTAAGTG
67090679 CCATATTTGA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (28 bp):
ATATTTCGTACACTAAGTGTCATTCTCA
Found at i:67096109 original size:28 final size:28
Alignment explanation
Indices: 67096038--67096118 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
67096028 ATCATAACTG
*
67096038 TAAATCTGATTGGGCCTAAT-GGCCGTA
1 TAAATATGATTGGGCCTAATGGGCCGTA
* *
67096065 TGAATGTGATTTGGGCCTAATGGGCC-TCA
1 TAAATATGA-TTGGGCCTAATGGGCCGT-A
*
67096094 TAAATATGATTAGGCCTAATGGGCC
1 TAAATATGATTGGGCCTAATGGGCC
67096119 ATATGGAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.15
28 27 0.59
29 12 0.26
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (28 bp):
TAAATATGATTGGGCCTAATGGGCCGTA
Found at i:67096138 original size:56 final size:56
Alignment explanation
Indices: 67096038--67096145 Score: 130
Period size: 56 Copynumber: 1.9 Consensus size: 56
67096028 ATCATAACTG
* * * * *
67096038 TAAATCTGATTGGGCCTAATGGCCGTATGAATGTGATTTGGGCCTAATGGGCCTCA
1 TAAATATGATTAGGCCTAATGGCCATATGAATGAGATTTAGGCCTAATGGGCCTCA
*
67096094 TAAATATGATTAGGCCTAATGGGCCATATGGAA-GAGA-TTAGGCCTATTGGGC
1 TAAATATGATTAGGCCTAAT-GGCCATAT-GAATGAGATTTAGGCCTAATGGGC
67096146 TATATAAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
56 31 0.70
57 10 0.23
58 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (56 bp):
TAAATATGATTAGGCCTAATGGCCATATGAATGAGATTTAGGCCTAATGGGCCTCA
Found at i:67109844 original size:40 final size:40
Alignment explanation
Indices: 67109741--67109957 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
67109731 CGGATGATAA
* * *
67109741 CCGGGCTAAGTCCCGGAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
67109781 CCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67109820 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67109860 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67109900 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67109940 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67109958 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 49 0.30
40 114 0.70
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67109955 original size:119 final size:119
Alignment explanation
Indices: 67109737--67109957 Score: 315
Period size: 119 Copynumber: 1.9 Consensus size: 119
67109727 TATTCGGATG
* * *
67109737 ATAACCGGGCTAAGTCCCGGAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
67109802 TTGTACGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGTACAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
*
67109856 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
67109920 ATTTG-AGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGTA-CAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
67109958 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
118 2 0.02
119 64 0.70
120 25 0.27
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTACAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:67114010 original size:49 final size:50
Alignment explanation
Indices: 67113937--67114078 Score: 207
Period size: 49 Copynumber: 2.9 Consensus size: 50
67113927 AGCCGAAGCT
* *
67113937 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCAAC
*
67113985 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCAAC
** *
67114036 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA
67114079 TCACAGTTTT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
48 1 0.01
49 40 0.47
50 40 0.47
51 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCAAC
Found at i:67114067 original size:50 final size:49
Alignment explanation
Indices: 67113949--67114078 Score: 199
Period size: 50 Copynumber: 2.6 Consensus size: 49
67113939 CTGGTACGCA
**
67113949 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACACG
*
67113998 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAACAGTCTAATACACG
*
67114048 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA
67114079 TCACAGTTTT
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
49 31 0.41
50 40 0.53
51 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTAATACACG
Found at i:67114132 original size:101 final size:99
Alignment explanation
Indices: 67113949--67114135 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
67113939 CTGGTACGCA
* * * *
67113949 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCGGGTACACATAGTAGCCTGAACTTA
* * *
67114014 GTACTACACATGTGACCTCACCATCTAATACACG
66 ATACTACACAAGCGACCTCACCATCTAATACACG
* * *
67114048 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGTCTGAAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCGGGTACACATAGTAGCCTGAAC
67114112 TTAATACTACACAAGCGACCTCAC
63 TTAATACTACACAAGCGACCTCAC
67114136 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 31 0.41
101 40 0.53
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCGGGTACACATAGTAGCCTGAACTTA
ATACTACACAAGCGACCTCACCATCTAATACACG
Found at i:67116786 original size:27 final size:27
Alignment explanation
Indices: 67116763--67116886 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
67116753 CAATTTACAG
67116763 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
67116790 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
67116817 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
67116844 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
67116871 AATTACTAAAATACCC
1 AATTACCAAAATACCC
67116887 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:67116821 original size:54 final size:54
Alignment explanation
Indices: 67116763--67116886 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
67116753 CAATTTACAG
* * *
67116763 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
* *
67116817 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
67116871 AATTACTAAAATACCC
1 AATTACTAAAATACCC
67116887 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGAAA
Found at i:67116855 original size:81 final size:81
Alignment explanation
Indices: 67116763--67116915 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
67116753 CAATTTACAG
* **
67116763 AATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTACTAA
1 AATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTACTAA
67116826 AATACCCTTTGTTTATAA
64 AATACCCTTTGTTTATAA
* * *
67116844 AATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTGAAA
1 AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
67116909 TACCCTT
66 TACCCTT
67116916 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:67116899 original size:27 final size:27
Alignment explanation
Indices: 67116869--67116930 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
67116859 CATGGTTTGA
67116869 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
67116896 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
67116923 AAAATTAC
1 AAAATTAC
67116931 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:67116899 original size:54 final size:54
Alignment explanation
Indices: 67116763--67116913 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
67116753 CAATTTACAG
* ** * * *
67116763 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
67116817 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
67116871 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
67116914 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:67117582 original size:28 final size:28
Alignment explanation
Indices: 67117550--67117608 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
67117540 GCGTAGATCA
67117550 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67117578 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67117606 CGA
1 CGA
67117609 TATACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67120897 original size:27 final size:27
Alignment explanation
Indices: 67120829--67120899 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
67120819 CGACTTGTAA
* *
67120829 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
67120856 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
67120883 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
67120900 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:67120906 original size:27 final size:27
Alignment explanation
Indices: 67120883--67121006 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
67120873 CAATTTACAG
67120883 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
67120910 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
67120937 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
67120964 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
67120991 AATTACTAAAATACCC
1 AATTACCAAAATACCC
67121007 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:67120925 original size:54 final size:53
Alignment explanation
Indices: 67120867--67121006 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
67120857 ATTACCGTTT
67120867 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
67120921 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
67120975 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
67121007 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:67121018 original size:81 final size:81
Alignment explanation
Indices: 67120883--67121035 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
67120873 CAATTTACAG
* **
67120883 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
67120948 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
67120964 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
67121027 AATACCCTT
64 AATACCCTT
67121036 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:67121019 original size:27 final size:27
Alignment explanation
Indices: 67120989--67121050 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
67120979 CATGGTTTGA
67120989 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
67121016 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
67121043 AAAATTAC
1 AAAATTAC
67121051 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:67121019 original size:54 final size:54
Alignment explanation
Indices: 67120883--67121033 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
67120873 CAATTTACAG
* ** * * *
67120883 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
67120937 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
67120991 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
67121034 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:67121703 original size:28 final size:28
Alignment explanation
Indices: 67121671--67121729 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
67121661 GCGTAGATCA
67121671 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67121699 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67121727 CGA
1 CGA
67121730 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67135045 original size:50 final size:49
Alignment explanation
Indices: 67134870--67135114 Score: 260
Period size: 49 Copynumber: 4.9 Consensus size: 49
67134860 TCTATTGTGA
* * * * *
67134870 GGTCACATGCGTAGTACTAAGTGCAGGCTACGACATGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * ** * *
67134919 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTGTGCGTACCCGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * *
67134969 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
67135019 AGGTCACGTGTGTAGTACT-AGATGCAGGCTACTACTTGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAG-TGCAGGCTACTACGTGTACCAGATAATT
* * *
67135069 GGT-ATCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCA-CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
67135115 GCTTTGGCTA
Statistics
Matches: 163, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 77 0.47
50 48 0.29
51 37 0.23
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:67142214 original size:49 final size:50
Alignment explanation
Indices: 67142135--67142368 Score: 215
Period size: 49 Copynumber: 4.7 Consensus size: 50
67142125 ATCTATTGTG
* * *
67142135 AGGTCACGT-TGTAGTACTTAGTGCGGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* * * **
67142184 -GGTCACATGTGTAGTACTAAGTTCAAGCTACTATGCGTACCCAATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT
*** * * * * *
67142234 CTATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-AGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATA-ATT
* ** *
67142284 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGCACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
** *
67142334 -GGTTGCATATGTAGTACTAAGTGCAGGCTACTATG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
67142369 CGTGTAACAC
Statistics
Matches: 147, Mismatches: 33, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
48 7 0.05
49 60 0.41
50 45 0.31
51 35 0.24
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
Found at i:67151625 original size:49 final size:50
Alignment explanation
Indices: 67151552--67151792 Score: 263
Period size: 49 Copynumber: 4.8 Consensus size: 50
67151542 ATTATGAGGT
* *
67151552 CATGTTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCG
1 CATG-TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCA
* * * * * *
67151602 CATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCA
* * **
67151653 CGTGTGTAGTA-TAAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACT-AAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCA
* * * * *
67151703 CGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGATAATT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCA
* *
67151752 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
67151793 GCCTTGTCTA
Statistics
Matches: 157, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
49 72 0.46
50 49 0.31
51 36 0.23
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCA
Found at i:67151744 original size:101 final size:98
Alignment explanation
Indices: 67151552--67151779 Score: 305
Period size: 101 Copynumber: 2.3 Consensus size: 98
67151542 ATTATGAGGT
*
67151552 CATGTTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACTAA
1 CATG-TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACTAA
**
67151617 GTGTAGGCTACTATGCGTACCCGATAACTTCGATCA
65 GTGTAGGCTACTACACGTACCCGATAA-TT-GATCA
* ** *
67151653 CGTGTGTAGTA-TAAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTA
1 CATGTGTAGTACT-AAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACATGTGTAGTACTA
* * * *
67151717 AGTGTAGGCTACTACATGTACCGGATAATTGGTCG
64 AGTGTAGGCTACTACACGTACCCGATAATTGATCA
67151752 CATGTGTAGTACTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
67151780 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
99 29 0.26
100 39 0.35
101 44 0.39
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (98 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACTAAG
TGTAGGCTACTACACGTACCCGATAATTGATCA
Found at i:67155300 original size:46 final size:46
Alignment explanation
Indices: 67155250--67155425 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67155240 TGGTTGAGCA
67155250 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67155296 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67155341 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67155389 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67155426 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67155406 original size:93 final size:93
Alignment explanation
Indices: 67155247--67155418 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67155237 GGATGGTTGA
* *
67155247 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67155312 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67155340 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67155405 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67155419 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67157727 original size:12 final size:12
Alignment explanation
Indices: 67157710--67157741 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
67157700 CAAGACACAT
67157710 GCCCGTGTCTTA
1 GCCCGTGTCTTA
67157722 GCCCGTGTCTTA
1 GCCCGTGTCTTA
67157734 GCCCGTGT
1 GCCCGTGT
67157742 GGTTACTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.34, G:0.28, T:0.31
Consensus pattern (12 bp):
GCCCGTGTCTTA
Found at i:67180747 original size:28 final size:27
Alignment explanation
Indices: 67180684--67180753 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
67180674 ATAGTGAGTC
67180684 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
67180711 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
67180739 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67180754 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:67184625 original size:18 final size:17
Alignment explanation
Indices: 67184593--67184681 Score: 81
Period size: 17 Copynumber: 5.1 Consensus size: 17
67184583 TGAATCCTCC
*
67184593 TATTTTT-TATTTATTCT
1 TATTTTTATTTTTATT-T
*
67184610 TATTCTTATTTTTATTT
1 TATTTTTATTTTTATTT
*
67184627 TATTTTTATTTTTCTTT
1 TATTTTTATTTTTATTT
*
67184644 TGATTTTTATTTTTGTTT
1 T-ATTTTTATTTTTATTT
* *
67184662 CAATTTTATTATTTTATTT
1 TATTTTTA-T-TTTTATTT
67184681 T
1 T
67184682 CAAAGAAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
17 29 0.49
18 23 0.39
19 7 0.12
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.76
Consensus pattern (17 bp):
TATTTTTATTTTTATTT
Found at i:67184628 original size:23 final size:23
Alignment explanation
Indices: 67184596--67184650 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
67184586 ATCCTCCTAT
67184596 TTTTTA-TTTATTCTTATTCTTA
1 TTTTTATTTTATTCTTATTCTTA
* * *
67184618 TTTTTATTTTATTTTTATTTTTC
1 TTTTTATTTTATTCTTATTCTTA
*
67184641 TTTTGATTTT
1 TTTTTATTTT
67184651 TATTTTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 6 0.21
23 22 0.79
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTTTATTTTATTCTTATTCTTA
Found at i:67184635 original size:29 final size:29
Alignment explanation
Indices: 67184593--67184657 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
67184583 TGAATCCTCC
67184593 TATTTTTTATTTATTCTTATTCTT-ATTTT
1 TATTTTTTATTTATTCTTATT-TTGATTTT
* *
67184622 TATTTTATT-TTTATTTTTCTTTTGATTTT
1 TATTTT-TTATTTATTCTTATTTTGATTTT
67184651 TATTTTT
1 TATTTTT
67184658 GTTTCAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 3 0.09
29 27 0.84
30 2 0.06
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (29 bp):
TATTTTTTATTTATTCTTATTTTGATTTT
Found at i:67184637 original size:6 final size:6
Alignment explanation
Indices: 67184593--67184657 Score: 71
Period size: 6 Copynumber: 11.2 Consensus size: 6
67184583 TGAATCCTCC
* * *
67184593 TATTTT T-TATT TATTCT TATTCT TATTTT TA-TTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* *
67184639 TCTTTT GATTTT TATTTT T
1 TATTTT TATTTT TATTTT T
67184658 GTTTCAATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
5 9 0.18
6 40 0.82
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:67184656 original size:23 final size:22
Alignment explanation
Indices: 67184602--67184656 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
67184592 CTATTTTTTA
*
67184602 TTTATTCTTATTCTTATTTTTAT
1 TTTATT-TTATTCTTATTTTGAT
* *
67184625 TTTATTTTTATTTTTCTTTTGATT
1 TTTA-TTTTATTCTTATTTTGA-T
67184649 TTTATTTT
1 TTTATTTT
67184657 TGTTTCAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (22 bp):
TTTATTTTATTCTTATTTTGAT
Found at i:67190534 original size:18 final size:18
Alignment explanation
Indices: 67190513--67190551 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
67190503 ATTAAGGTAA
67190513 GAAGTTAT-GTTAATTCTT
1 GAAGTTATGGTTAA-TCTT
*
67190531 GAAGTTTTGGTTAATCTT
1 GAAGTTATGGTTAATCTT
67190549 GAA
1 GAA
67190552 TGAGGTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.46
Consensus pattern (18 bp):
GAAGTTATGGTTAATCTT
Found at i:67191827 original size:40 final size:40
Alignment explanation
Indices: 67191772--67192076 Score: 391
Period size: 40 Copynumber: 7.5 Consensus size: 40
67191762 TATTCGGATG
67191772 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
67191812 ATATCTGGGCTAAGTCTCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
*
67191855 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
67191895 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
67191938 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
67191978 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
67192018 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
67192058 A-ATCC-GGCTAAAT-CCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
67192077 ATACTTGGGT
Statistics
Matches: 235, Mismatches: 24, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
37 6 0.03
38 6 0.03
39 4 0.02
40 144 0.61
41 2 0.01
42 1 0.00
43 72 0.31
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:67191916 original size:83 final size:83
Alignment explanation
Indices: 67191776--67192076 Score: 445
Period size: 83 Copynumber: 3.7 Consensus size: 83
67191766 CGGATGATAT
* *
67191776 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
67191841 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
67191859 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
67191924 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
* * **
67191942 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
67192007 TGC---TAG-TGACTATAT
66 TGCGAGTAGTTG-CTATAC
* * * *
67192022 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTA-ATCC-GGCTAAAT-CCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAG
67192077 ATACTTGGGT
Statistics
Matches: 205, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
77 6 0.03
78 7 0.03
79 6 0.03
80 41 0.20
83 145 0.71
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTAGTTGCTATAC
Found at i:67191991 original size:123 final size:124
Alignment explanation
Indices: 67191772--67192053 Score: 412
Period size: 123 Copynumber: 2.3 Consensus size: 124
67191762 TATTCGGATG
* * *
67191772 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATATCTGGGCTAAGTCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCGAAG
** *
67191834 GCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
66 GCATTTGTGC--GTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACT
*
67191895 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCGAAG
* *
67191960 GCATTTGTGC-TAG-TGACTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
66 GCATTTGTGCGTAGTTG-CTATACCCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACT
*
67192018 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67192054 TGCTAATCCG
Statistics
Matches: 145, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
122 2 0.01
123 107 0.74
124 1 0.01
126 35 0.24
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (124 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAGTCCCGAAG
GCATTTGTGCGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACT
Found at i:67200072 original size:43 final size:41
Alignment explanation
Indices: 67199973--67200307 Score: 427
Period size: 40 Copynumber: 8.2 Consensus size: 41
67199963 TATTCGGATG
* *
67199973 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCA-AGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTGCT
*
67200013 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A-TAGTTGCT
* * *
67200056 ATACCCAGGCTAAGTCCCGAAGGCATTTGTGCA-AGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTGCT
67200096 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A-TAGTTGCT
*
67200139 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A-TAGTTGCT
67200182 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGC-TAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTG-CT
**
67200221 ATATCCGGGCTAAGTCCCGAAGGCATTCATGC-TAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTG-CT
* * *
67200261 ATATCCGGGCTAAG-ACCGAAGGCATTTGCGC-GAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTGCT
67200300 ATATCCGG
1 ATATCCGG
67200308 CAAATCCCAA
Statistics
Matches: 270, Mismatches: 16, Indels: 19
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 33 0.12
40 118 0.44
41 2 0.01
42 29 0.11
43 86 0.32
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTGCT
Found at i:67200119 original size:83 final size:83
Alignment explanation
Indices: 67199979--67200295 Score: 466
Period size: 83 Copynumber: 3.8 Consensus size: 83
67199969 GATGATATCT
*
67199979 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
67200044 CGAGTAGTTGCTATACCC
66 CGAGTAGTTGCTATACCC
*
67200062 AGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
67200127 CGAGTAGTTGCTATACCC
66 CGAGTAGTTGCTATACCC
*
67200145 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATA-CCGGGCTAAGTCCCGAAGGCATTT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
67200209 GTGC---TAG-TGACTATATCC
63 GTGCGAGTAGTTG-CTATACCC
** * * * *
67200227 GGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAG-ACCGAAGGCATTTGCG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
67200291 CGAGT
66 CGAGT
67200296 TGCTATATCC
Statistics
Matches: 214, Mismatches: 12, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
79 23 0.11
80 10 0.05
81 2 0.01
82 35 0.16
83 106 0.50
84 1 0.00
85 28 0.13
86 9 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (83 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTAGTTGCTATACCC
Found at i:67203640 original size:26 final size:25
Alignment explanation
Indices: 67203576--67203645 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
67203566 CAATCTGACC
* *
67203576 CATAGCTTGTGTGAGCAGGCCCATTT
1 CATAGC-TGTGTGAGCAAGACCATTT
* *
67203602 CACAACTGATGTGAGCAAGACCATTT
1 CATAGCTG-TGTGAGCAAGACCATTT
67203628 CATAGCTCGTGTGAGCAA
1 CATAGCT-GTGTGAGCAA
67203646 ACATGTATCT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.06
26 33 0.92
27 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
CATAGCTGTGTGAGCAAGACCATTT
Found at i:67208423 original size:40 final size:40
Alignment explanation
Indices: 67208357--67208523 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
67208347 AAATTGAATG
* * *
67208357 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67208396 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
67208436 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
67208476 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
67208516 ATATCCGG
1 ATATCCGG
67208524 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67218908 original size:40 final size:40
Alignment explanation
Indices: 67218864--67218978 Score: 160
Period size: 40 Copynumber: 2.9 Consensus size: 40
67218854 TGCTGAAATT
* *
67218864 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGC
* *
67218904 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAGC
* *
67218944 TAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAA
67218979 ATCGTGATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.04
40 62 0.93
41 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGC
Found at i:67218991 original size:40 final size:39
Alignment explanation
Indices: 67218823--67218993 Score: 150
Period size: 40 Copynumber: 4.3 Consensus size: 39
67218813 AGAAATTGAA
* * *
67218823 TGATATCCGGGCTAAGCCCCAAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
67218863 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
67218903 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
67218943 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
67218983 TGATATCCGGG
1 TGATATCCGGG
67218994 TAAAGTCCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 94 0.89
41 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:67222752 original size:27 final size:27
Alignment explanation
Indices: 67222714--67222891 Score: 141
Period size: 27 Copynumber: 6.7 Consensus size: 27
67222704 AACTGTTTAG
*
67222714 ATTACTGAAATACCCCTGATTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
*
67222741 ATTACCGAAATA-CCCTAATTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
* *
67222767 ATTACCAAAATATCCCTAGA-TTGTAAA
1 ATTACCGAAATACCCCT-GATTTGTAAA
* * *
67222794 ATTACCGAAATACCTCT-AGTTTATCAA
1 ATTACCGAAATACCCCTGA-TTTGTAAA
* * ** *
67222821 ATTACCTAAATTCCCCCAATTTATAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
* * *
67222848 ATTAGCGAAATA-CCTTG-TAGTGTAAA
1 ATTACCGAAATACCCCTGAT-TTGTAAA
**
67222874 ATTACAAAAATACCCCTG
1 ATTACCGAAATACCCCTG
67222892 TAGGGTAAAA
Statistics
Matches: 118, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
25 2 0.02
26 40 0.34
27 74 0.63
28 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGATTTGTAAA
Found at i:67222851 original size:54 final size:55
Alignment explanation
Indices: 67222721--67222862 Score: 168
Period size: 54 Copynumber: 2.7 Consensus size: 55
67222711 TAGATTACTG
* *
67222721 AAATA-CCCCTGATTTGTAAAATTACCGAAATACC-CTAATTTGTAAAATTACCA
1 AAATATCCCCAGATTTGTAAAATTACCGAAATACCTCTAATTTATAAAATTACCA
* * * *
67222774 AAATATCCCTAGA-TTGTAAAATTACCGAAATACCTCTAGTTTATCAAATTACCT
1 AAATATCCCCAGATTTGTAAAATTACCGAAATACCTCTAATTTATAAAATTACCA
* *
67222828 AAAT-TCCCCCA-ATTTATAAAATTAGCGAAATACCT
1 AAATAT-CCCCAGATTTGTAAAATTACCGAAATACCT
67222863 TGTAGTGTAA
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
53 28 0.37
54 48 0.63
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (55 bp):
AAATATCCCCAGATTTGTAAAATTACCGAAATACCTCTAATTTATAAAATTACCA
Found at i:67225198 original size:13 final size:13
Alignment explanation
Indices: 67225180--67225205 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67225170 TTGTGCATTC
67225180 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
67225193 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
67225206 AACAAATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:67227039 original size:13 final size:13
Alignment explanation
Indices: 67227021--67227053 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
67227011 TGAATCTGAA
67227021 AAGAAGCCACTAC
1 AAGAAGCCACTAC
67227034 AAGAAGCCACTAC
1 AAGAAGCCACTAC
67227047 AAGAAGC
1 AAGAAGC
67227054 TGACAGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.48, C:0.27, G:0.18, T:0.06
Consensus pattern (13 bp):
AAGAAGCCACTAC
Found at i:67228213 original size:49 final size:49
Alignment explanation
Indices: 67228141--67228234 Score: 188
Period size: 49 Copynumber: 1.9 Consensus size: 49
67228131 GAGGAATTGC
67228141 TCCAAGTATTAAGAGAACGCAAAAGAGCCATAGCTTGGAAAATTTAATG
1 TCCAAGTATTAAGAGAACGCAAAAGAGCCATAGCTTGGAAAATTTAATG
67228190 TCCAAGTATTAAGAGAACGCAAAAGAGCCATAGCTTGGAAAATTT
1 TCCAAGTATTAAGAGAACGCAAAAGAGCCATAGCTTGGAAAATTT
67228235 TTGACATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (49 bp):
TCCAAGTATTAAGAGAACGCAAAAGAGCCATAGCTTGGAAAATTTAATG
Found at i:67241126 original size:13 final size:13
Alignment explanation
Indices: 67241108--67241132 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67241098 AGCCAACTCA
67241108 CACGGGCGTGTCG
1 CACGGGCGTGTCG
67241121 CACGGGCGTGTC
1 CACGGGCGTGTC
67241133 CCTATCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.44, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCG
Found at i:67241950 original size:13 final size:13
Alignment explanation
Indices: 67241932--67241957 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67241922 TTGTGCATTC
67241932 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
67241945 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
67241958 AACAAATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:67244865 original size:17 final size:17
Alignment explanation
Indices: 67244823--67244865 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
67244813 CTTTCATACG
*
67244823 AGCTTACTAAGCTATAT
1 AGCTTACTCAGCTATAT
67244840 AGCTTACTCAGCTATAT
1 AGCTTACTCAGCTATAT
67244857 AGCTTACTC
1 AGCTTACTC
67244866 TATTTTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (17 bp):
AGCTTACTCAGCTATAT
Found at i:67246959 original size:40 final size:41
Alignment explanation
Indices: 67246902--67247120 Score: 299
Period size: 40 Copynumber: 5.5 Consensus size: 41
67246892 CCCAAGTACT
* *
67246902 TTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCC
* * *
67246941 TTCGGGTCTTATCCCGGATATAGTC-ACTAGCACAAAAGCC
1 TTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCC
* *
67246981 TTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACGCC
1 TTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCC
* *
67247021 TTCGGGACTTAGCCCGGGTATAGTCAA-TAGCACAACTGCC
1 TTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCC
*
67247061 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATGCC
1 TTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCC
67247100 TTCGGGACTTAGCCCGGATAT
1 TTCGGGACTTAGCCCGGATAT
67247121 CATCCGAATA
Statistics
Matches: 159, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 36 0.23
40 119 0.75
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (41 bp):
TTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCC
Found at i:67253520 original size:64 final size:64
Alignment explanation
Indices: 67253441--67253570 Score: 251
Period size: 64 Copynumber: 2.0 Consensus size: 64
67253431 TGTTTCAATG
*
67253441 TAAAATTGATATATTTACTATGATCTCCGAGGTGTTGAAAGTATTTAAGTTGGTATGATAATAA
1 TAAAATTGATATATTTACTATGATCTCCGAGGTGTTGAAAGTATGTAAGTTGGTATGATAATAA
67253505 TAAAATTGATATATTTACTATGATCTCCGAGGTGTTGAAAGTATGTAAGTTGGTATGATAATAA
1 TAAAATTGATATATTTACTATGATCTCCGAGGTGTTGAAAGTATGTAAGTTGGTATGATAATAA
67253569 TA
1 TA
67253571 CAACAATAAT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.38
Consensus pattern (64 bp):
TAAAATTGATATATTTACTATGATCTCCGAGGTGTTGAAAGTATGTAAGTTGGTATGATAATAA
Found at i:67254095 original size:68 final size:65
Alignment explanation
Indices: 67254023--67254229 Score: 172
Period size: 66 Copynumber: 3.2 Consensus size: 65
67254013 CATCATGTGT
* * * * *
67254023 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCACATGCGTGATACCAAGTGAGACACCAT
67254087 GTAG
62 GTAG
** * *
67254091 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCACATGCGTGGTTCCAAGTGAAGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGATACCAAGTG-AGACACCATGTA
67254156 G
65 G
* * * * * **
67254157 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTG-TTCACCATGT-
1 ACAAGAGAGCTACGACATATA-TGTAGCTAGGTCACATGCGTGATACCAAGTGAGACACCATGTA
67254218 G
65 G
67254219 TACAAGAGAGC
1 -ACAAGAGAGC
67254230 CGAACTATAT
Statistics
Matches: 119, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.15
64 26 0.22
65 27 0.23
66 32 0.27
67 2 0.02
68 13 0.11
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGATACCAAGTGAGACACCATGTAG
Found at i:67262260 original size:40 final size:39
Alignment explanation
Indices: 67262179--67262368 Score: 168
Period size: 40 Copynumber: 4.8 Consensus size: 39
67262169 TGAATGATGT
* * * * *
67262179 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAATC
*
67262219 CGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAATC
1 CGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATC
* * * *
67262259 CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACC
1 CGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATC
* *
67262298 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AATC
** * *
67262338 CGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
67262369 CGTTATATCC
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 34 0.27
40 84 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATC
Found at i:67262315 original size:79 final size:80
Alignment explanation
Indices: 67262179--67262368 Score: 235
Period size: 79 Copynumber: 2.4 Consensus size: 80
67262169 TGAATGATGT
* * *
67262179 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCG
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
67262243 TGCGAGTTAATA-AATC
65 TGCGAGTTAATATAA-C
* **
67262259 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTCG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTCG
*
67262322 TGCGAGTTACTATAAC
65 TGCGAGTTAATATAAC
** *
67262338 CGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67262369 CGTTATATCC
Statistics
Matches: 96, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.59
80 38 0.40
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGT
GCGAGTTAATATAAC
Found at i:67262392 original size:79 final size:78
Alignment explanation
Indices: 67262179--67262394 Score: 213
Period size: 79 Copynumber: 2.7 Consensus size: 78
67262169 TGAATGATGT
* * *
67262179 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGA-TCCGAAGGCATTC
1 CGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGGA-TAA-ATTCCGAAGGCATTC
67262242 GTGCGAGTTAATAAATC
62 GTGCGAGTTAATAAATC
* * * * * * *
67262259 CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGATAAATTCCGAAGGCATTCGTG
*
67262324 CGAGTTACTATAA-C
65 CGAGTTAATA-AATC
** **
67262338 CGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGATAAATTCCGAAGG
1 CGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGG
67262395 TACGTGATTC
Statistics
Matches: 112, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
79 67 0.60
80 45 0.40
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGGCATTCGTGC
GAGTTAATAAATC
Found at i:67269450 original size:15 final size:16
Alignment explanation
Indices: 67269430--67269463 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
67269420 TTTCCCCTCA
*
67269430 TTTCTT-TCTTTTGAC
1 TTTCTTCTCTTTTCAC
67269445 TTTCTTCTCTTTTCAC
1 TTTCTTCTCTTTTCAC
67269461 TTT
1 TTT
67269464 TTAGGGTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.06, C:0.24, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTCTTCTCTTTTCAC
Found at i:67271663 original size:27 final size:27
Alignment explanation
Indices: 67271633--67271849 Score: 317
Period size: 27 Copynumber: 8.0 Consensus size: 27
67271623 GACCCTAATC
*
67271633 GGTAAAATGACTGTTTTGCCCTTATGG
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
67271660 GGTAAAATGATTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* *
67271687 GGCAAAATGATTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* *
67271714 GGCAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* *
67271741 GGTAAAATGACTGTTTCGCCCTTGTGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* *
67271768 GGTAAAATAACTGTTTTTCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* *
67271795 GGTAAAATGACTATTTTGCCCTTATAT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
67271822 GGTAAAATGACTGTTTTGCTCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
67271849 G
1 G
67271850 ATGTATGTTT
Statistics
Matches: 170, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 170 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:67275707 original size:28 final size:27
Alignment explanation
Indices: 67275672--67275727 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
67275662 AATCATATTT
*
67275672 ACAAGATAGTTCTTG-CAAACTTTCCTC
1 ACAAGATAGTAC-TGACAAACTTTCCTC
*
67275699 ACAACGATAGTACTGACAGACTTTCCTC
1 ACAA-GATAGTACTGACAAACTTTCCTC
67275727 A
1 A
67275728 TATTTGATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (27 bp):
ACAAGATAGTACTGACAAACTTTCCTC
Found at i:67275821 original size:27 final size:27
Alignment explanation
Indices: 67275783--67275905 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
67275773 ACCTCCACAT
67275783 ATTAGATAGTCTTGACAGACTTCTT-AC
1 ATTAGATAGTCTTGACAGACTT-TTCAC
* * *
67275810 ATTAGATGGTCTTGAAAG-GTTTTCCAC
1 ATTAGATAGTCTTGACAGACTTTT-CAC
*
67275837 ATTAGATAGTCCTGACAGACTTTTCAC
1 ATTAGATAGTCTTGACAGACTTTTCAC
* * ** * *
67275864 ATTGGATACTCTTGATGGGCTTTCCAC
1 ATTAGATAGTCTTGACAGACTTTTCAC
*
67275891 ATTAGATAGTTTTGA
1 ATTAGATAGTCTTGA
67275906 TGAGCTTTCC
Statistics
Matches: 76, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
25 2 0.03
26 2 0.03
27 68 0.89
28 4 0.05
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTAGATAGTCTTGACAGACTTTTCAC
Found at i:67275841 original size:54 final size:54
Alignment explanation
Indices: 67275783--67275905 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 54
67275773 ACCTCCACAT
** *
67275783 ATTAGATAGTCTTGACAGACTTCTT-ACATTAGATGGTCTTGAAAGGTTTTCCAC
1 ATTAGATAGTCTTGACAGACTT-TTCACATTAGATACTCTTGAAAGGCTTTCCAC
* * **
67275837 ATTAGATAGTCCTGACAGACTTTTCACATTGGATACTCTTGATGGGCTTTCCAC
1 ATTAGATAGTCTTGACAGACTTTTCACATTAGATACTCTTGAAAGGCTTTCCAC
*
67275891 ATTAGATAGTTTTGA
1 ATTAGATAGTCTTGA
67275906 TGAGCTTTCC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.03
54 57 0.97
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (54 bp):
ATTAGATAGTCTTGACAGACTTTTCACATTAGATACTCTTGAAAGGCTTTCCAC
Found at i:67275906 original size:27 final size:27
Alignment explanation
Indices: 67275808--67275928 Score: 107
Period size: 27 Copynumber: 4.5 Consensus size: 27
67275798 CAGACTTCTT
* ** *
67275808 ACATTAGATGGTCTTGAAAGGTTTTCC
1 ACATTAGATAGTCTTGATGGGCTTTCC
* ** * *
67275835 ACATTAGATAGTCCTGACAGACTTTTC
1 ACATTAGATAGTCTTGATGGGCTTTCC
* *
67275862 ACATTGGATACTCTTGATGGGCTTTCC
1 ACATTAGATAGTCTTGATGGGCTTTCC
* *
67275889 ACATTAGATAGTTTTGATGAGCTTTCC
1 ACATTAGATAGTCTTGATGGGCTTTCC
* *
67275916 ATAGTAGATAGTC
1 ACATTAGATAGTC
67275929 CAGATGGACT
Statistics
Matches: 74, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.36
Consensus pattern (27 bp):
ACATTAGATAGTCTTGATGGGCTTTCC
Found at i:67275934 original size:27 final size:27
Alignment explanation
Indices: 67275877--67275934 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
67275867 GGATACTCTT
* * ***
67275877 GATGGGCTTTCCACATTAGATAGTTTT
1 GATGAGCTTTCCACAGTAGATAGTCCA
*
67275904 GATGAGCTTTCCATAGTAGATAGTCCA
1 GATGAGCTTTCCACAGTAGATAGTCCA
67275931 GATG
1 GATG
67275935 GACTTTTTAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (27 bp):
GATGAGCTTTCCACAGTAGATAGTCCA
Found at i:67276015 original size:24 final size:24
Alignment explanation
Indices: 67275988--67276049 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
67275978 TTGTCCTACT
* *
67275988 AAGGGCTCTCATACGTCCCACATA
1 AAGGGCTTTCATACGTCCCACACA
* *
67276012 AAGGGCTTTCAAACGTCCTACACA
1 AAGGGCTTTCATACGTCCCACACA
67276036 AAGGGCTTTCATAC
1 AAGGGCTTTCATAC
67276050 ACTGGTATGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (24 bp):
AAGGGCTTTCATACGTCCCACACA
Found at i:67278326 original size:40 final size:40
Alignment explanation
Indices: 67278266--67278433 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
67278256 CGGGATTTAA
* ** *
67278266 CCGGATATAACCACAAGCACAATTGCCTTCAGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCAGGTCTTAGC
* *** *
67278306 CCGGATTTGGTAACTTGCACAATTGCCTTCAGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCAGGTCTTAGC
*
67278346 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCAGGTCTTAGC
* * * * *
67278386 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCAGGTCTTAGC
67278426 CCGGATAT
1 CCGGATAT
67278434 CATTCAAATG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 103 0.95
41 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCAGGTCTTAGC
Found at i:67278413 original size:80 final size:80
Alignment explanation
Indices: 67278266--67278433 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 80
67278256 CGGGATTTAA
* * ** * *
67278266 CCGGATATAACCACAAGCACAATTGCCTTCAGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCAGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
67278331 CCTTCAGGTCTTAGC
66 CCTTCAGGACTTAGC
** * * * *
67278346 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCAGGTCTTAACCCGGATATAATAACTAGCACAAAT
*
67278410 GCCTTCGGGACTTAGC
65 GCCTTCAGGACTTAGC
67278426 CCGGATAT
1 CCGGATAT
67278434 CATTCAAATG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 71 0.97
81 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCAGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCAGGACTTAGC
Found at i:67280558 original size:93 final size:93
Alignment explanation
Indices: 67280446--67280617 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
67280436 CGCCCATAAG
*
67280446 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
67280510 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
67280539 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67280604 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67280618 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67280612 original size:46 final size:46
Alignment explanation
Indices: 67280439--67280614 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
67280429 TGTAACCCGC
* *
67280439 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
67280485 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
67280535 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67280578 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67280615 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.