Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 224 of 328
Found at i:67285875 original size:51 final size:51
Alignment explanation
Indices: 67285820--67285919 Score: 141
Period size: 51 Copynumber: 2.0 Consensus size: 51
67285810 CTACCACATA
67285820 ACATGTAA-CACATCC-CTAATGAACTCGGACCTCTCAATAAGCTCGGATGTT
1 ACATG-AATCACATCCAC-AATGAACTCGGACCTCTCAATAAGCTCGGATGTT
* * *
67285871 ACATGAATCACATCCACCATGAACTCGGACCTCTCAATGAGGTCGGATG
1 ACATGAATCACATCCACAATGAACTCGGACCTCTCAATAAGCTCGGATG
67285920 CCACATATCT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
50 2 0.05
51 41 0.93
52 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (51 bp):
ACATGAATCACATCCACAATGAACTCGGACCTCTCAATAAGCTCGGATGTT
Found at i:67288152 original size:46 final size:46
Alignment explanation
Indices: 67288099--67288420 Score: 412
Period size: 46 Copynumber: 7.0 Consensus size: 46
67288089 ATGCATTAGA
* *
67288099 ATATGAAATGTATAAGACCATGGTTGAAAGACACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
**
67288145 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGGG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
67288191 ATATAAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
67288237 ATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACAGG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* * ** *
67288283 ATATAAAATGTGTAAGACCATGGTTGAAAGATACCAGGGCAATGTA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* *** *
67288329 ACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
* * * * * *
67288375 ACA-GAAGATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATATGAA-ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
67288421 TCGAAGATAA
Statistics
Matches: 240, Mismatches: 35, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
45 3 0.01
46 237 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:67289212 original size:22 final size:22
Alignment explanation
Indices: 67289167--67289212 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
67289157 ATAATTCATT
**
67289167 ATTATAATAAAGCATTTATCAC
1 ATTATAATAAAGCATTTAAAAC
*
67289189 ATTATATTAAAGCATTTAAAAC
1 ATTATAATAAAGCATTTAAAAC
67289211 AT
1 AT
67289213 ACTACCATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (22 bp):
ATTATAATAAAGCATTTAAAAC
Found at i:67291780 original size:66 final size:64
Alignment explanation
Indices: 67291710--67291879 Score: 171
Period size: 64 Copynumber: 2.6 Consensus size: 64
67291700 TAGGGCATAC
* * * * *
67291710 ATACTGACTT-GCATCACACGGCCAGAGACACGCTCATGTGTCATGGCCATGTAAAATATGGAGG
1 ATACTGACTTAG-ATCACACAGCCAGACACACGCCCATGTGCCA-GCCCATGTAAAATATGGA-G
67291774 GT
63 GT
* * * *
67291776 ATACTGACTTAGGTCACACAGCCGGCCACACGCCCATGTGCCAGCCCGTGTAAAATATGGAGGT
1 ATACTGACTTAGATCACACAGCCAGACACACGCCCATGTGCCAGCCCATGTAAAATATGGAGGT
* * ** * *
67291840 ATATTGACTTAGGTCACACAGCTGGCCATACGCCCATGTG
1 ATACTGACTTAGATCACACAGCCAGACACACGCCCATGTG
67291880 TCACAGACAG
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
64 40 0.44
65 16 0.18
66 34 0.37
67 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (64 bp):
ATACTGACTTAGATCACACAGCCAGACACACGCCCATGTGCCAGCCCATGTAAAATATGGAGGT
Found at i:67291855 original size:64 final size:65
Alignment explanation
Indices: 67291759--67291879 Score: 208
Period size: 64 Copynumber: 1.9 Consensus size: 65
67291749 GTCATGGCCA
67291759 TGTAAAATATGGAGGGTATACTGACTTAGGTCACACAGCCGGCCACACGCCCATGTGCCAGCCCG
1 TGTAAAATATGGAGGGTATACTGACTTAGGTCACACAGCCGGCCACACGCCCATGTGCCAGCCCG
* * *
67291824 TGTAAAATATGGA-GGTATATTGACTTAGGTCACACAGCTGGCCATACGCCCATGTG
1 TGTAAAATATGGAGGGTATACTGACTTAGGTCACACAGCCGGCCACACGCCCATGTG
67291880 TCACAGACAG
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
64 40 0.75
65 13 0.25
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (65 bp):
TGTAAAATATGGAGGGTATACTGACTTAGGTCACACAGCCGGCCACACGCCCATGTGCCAGCCCG
Found at i:67293000 original size:43 final size:43
Alignment explanation
Indices: 67292909--67293007 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
67292899 ATATCCCAAA
** * * *
67292909 TATGGTCTTACATGTTATCATATATCGATGCCGATACCCTAGC
1 TATGGTCTTACATGAAATCAAATAACGATGCCAATACCCTAGC
*
67292952 TATGGTCTTACATGAAATCAAATAACGATGCCAATGTCCC-AGAC
1 TATGGTCTTACATGAAATCAAATAACGATGCCAAT-ACCCTAG-C
67292996 -ATGGTCTTACAT
1 TATGGTCTTACAT
67293008 ATAATCACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
43 44 0.92
44 4 0.08
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (43 bp):
TATGGTCTTACATGAAATCAAATAACGATGCCAATACCCTAGC
Found at i:67297280 original size:50 final size:50
Alignment explanation
Indices: 67297202--67297496 Score: 346
Period size: 50 Copynumber: 5.9 Consensus size: 50
67297192 ATCTATTTTG
* **
67297202 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
67297252 AGGTCACGTGTGTGGTACTAAGTTCAGGCTACTACGTGTA-CTGAATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
* * * * * *
67297302 -GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * *
67297352 CGATCACGTGTGTAGTACTAAGTGCAGTCTACTACGTGTATCACATGATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
67297402 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
67297452 -GGTC-CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
67297497 GCTTTGGCTA
Statistics
Matches: 206, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
48 37 0.18
49 42 0.20
50 91 0.44
51 36 0.17
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:67299163 original size:110 final size:110
Alignment explanation
Indices: 67298970--67299174 Score: 356
Period size: 110 Copynumber: 1.9 Consensus size: 110
67298960 AACTTTTCTG
*
67298970 GCATTTATCTGACCACTTGAACTTAACATCTTTTTAAAGCAATCTTATTATCGGAGTTGCAATCA
1 GCATTTATCTGACCACTCGAACTTAACATCTTTTTAAAGCAATCTTATTATCGGAGTTGCAATCA
67299035 TCAAAAAGCCTTTTACAAACAGTCTATAATATCTTGCAGTTTCGA
66 TCAAAAAGCCTTTTACAAACAGTCTATAATATCTTGCAGTTTCGA
* *
67299080 GCATTTATCTGACCACTCGAACTTAACATCTTTTTGAAGCAATCTTGTTATCGGAGTTGCAATCA
1 GCATTTATCTGACCACTCGAACTTAACATCTTTTTAAAGCAATCTTATTATCGGAGTTGCAATCA
* * *
67299145 TCAAAAAGCTTTTTACAAACCGTTTATAAT
66 TCAAAAAGCCTTTTACAAACAGTCTATAAT
67299175 GTCCTACTAG
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
110 89 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (110 bp):
GCATTTATCTGACCACTCGAACTTAACATCTTTTTAAAGCAATCTTATTATCGGAGTTGCAATCA
TCAAAAAGCCTTTTACAAACAGTCTATAATATCTTGCAGTTTCGA
Found at i:67302493 original size:79 final size:81
Alignment explanation
Indices: 67302361--67302552 Score: 241
Period size: 79 Copynumber: 2.4 Consensus size: 81
67302351 GGATATAACG
* **
67302361 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATC
* *
67302424 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
*
67302441 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
** *
67302504 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
*
67302520 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
67302553 CATCATTCAA
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.55
80 41 0.42
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:67302552 original size:40 final size:39
Alignment explanation
Indices: 67302361--67302552 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 39
67302351 GGATATAACG
* ** *
67302361 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
67302401 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
67302441 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
67302480 ACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
67302520 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
67302553 CATCATTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 83 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:67310559 original size:79 final size:81
Alignment explanation
Indices: 67310437--67310628 Score: 241
Period size: 79 Copynumber: 2.4 Consensus size: 81
67310427 GGATATAACG
* **
67310437 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATC
* *
67310500 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
*
67310517 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
** *
67310580 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
*
67310596 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
67310629 CATCATTCAA
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.55
80 41 0.42
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:67310628 original size:40 final size:39
Alignment explanation
Indices: 67310437--67310628 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 39
67310427 GGATATAACG
* ** *
67310437 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
67310477 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
67310517 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
67310556 ACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
67310596 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
67310629 CATCATTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 83 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:67314124 original size:27 final size:27
Alignment explanation
Indices: 67314094--67314194 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
67314084 TTTAGTTTAC
67314094 TAAAATTACCGAAATATCCTTAG-TTTG
1 TAAAATTACCGAAATA-CCTTAGATTTG
* * * *
67314121 TAAAAAAATACTGAAATACCCTCGATTTG
1 T--AAAATTACCGAAATACCTTAGATTTG
* * *
67314150 TAAATTTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
67314177 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
67314195 CTCGATTTAC
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 3 0.05
27 35 0.58
28 4 0.07
29 18 0.30
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:67314199 original size:27 final size:27
Alignment explanation
Indices: 67314124--67314199 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
67314114 TAGTTTGTAA
* * *
67314124 AAAAATACTGAAATACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGACTTGT
* *
67314151 AAATTTACCGAAATACCTTCGACTTGT
1 AAAATTACCGAAATACCCTCGACTTGT
67314178 AAAATTACC-AAAGTACCCTCGA
1 AAAATTACCGAAA-TACCCTCGA
67314200 TTTACAGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.07
27 38 0.93
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCGACTTGT
Found at i:67314221 original size:27 final size:27
Alignment explanation
Indices: 67314191--67314401 Score: 257
Period size: 27 Copynumber: 7.8 Consensus size: 27
67314181 ATTACCAAAG
67314191 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67314218 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
67314245 TACCC-CTGATTTACATG-ATTATCGTTT
1 TACCCTC-GATTTACA-GAATTACCGTTT
* *
67314272 TACCCTTGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67314299 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67314326 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67314353 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67314380 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
67314402 TAAAATACCC
Statistics
Matches: 161, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.01
27 159 0.99
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:67314293 original size:81 final size:81
Alignment explanation
Indices: 67314191--67314401 Score: 293
Period size: 81 Copynumber: 2.6 Consensus size: 81
67314181 ATTACCAAAG
* *
67314191 TACCCTCGATTTACAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTTTACCCCTGAT
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTC-AATTTACAAAATTACCGTTTTACCCCTGAT
67314255 TTACATG-ATTA-TCGTTT
65 TTACA-GAATTACT-GTTT
* * * * * *
67314272 TACCCTTGACTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTTGATT
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCCTGATT
67314337 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*
67314353 TACCCTTGATTTACAGAATTACTGTTTTACCCTCAATTTACAAAATTAC
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTAC
67314402 TAAAATACCC
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 111 0.97
82 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTTGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCCTGATT
TACAGAATTACTGTTT
Found at i:67314427 original size:54 final size:54
Alignment explanation
Indices: 67314380--67314547 Score: 212
Period size: 54 Copynumber: 3.1 Consensus size: 54
67314370 ATTACTGTTT
** * *
67314380 TACCCTCAATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
* *
67314434 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
* * ** * *
67314488 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
67314542 TACCCT
1 TACCCT
67314548 TGACCTTCTA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 96 0.98
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCGAAA
Found at i:67314606 original size:27 final size:27
Alignment explanation
Indices: 67314389--67314632 Score: 170
Period size: 27 Copynumber: 9.0 Consensus size: 27
67314379 TTACCCTCAA
* *
67314389 TTTACAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTGG
* * *
67314416 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCTTGG
*
67314443 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTGG
* * * ***
67314470 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTATAAAATTACCAAAATACCCTTGG
* * *
67314497 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTATAAAATTACCAAAATACCCTTGG
* * *
67314524 TTTACAAAGTTA-CAGAAATACCCTTGACC
1 TTTATAAAATTACCA-AAATACCCTTG--G
* *
67314553 TTCTA-AAAATTA-TAGAAATACCATTGG
1 TT-TATAAAATTACCA-AAATACCCTTGG
* * *
67314580 TTTACAAAATTACTAAAATACCTTTGG
1 TTTATAAAATTACCAAAATACCCTTGG
* ** * *
67314607 TTTGTTGATTTACCAAAACACCCTTG
1 TTTATAAAATTACCAAAATACCCTTG
67314633 TAGGATGAAA
Statistics
Matches: 176, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.02
27 148 0.84
28 2 0.01
29 20 0.11
30 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCTTGG
Found at i:67314707 original size:27 final size:27
Alignment explanation
Indices: 67314670--67314753 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
67314660 TTAGGTAAAA
67314670 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
*
67314697 GACCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
67314724 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
67314751 GAC
1 GAC
67314754 GAATATGCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:67315973 original size:20 final size:20
Alignment explanation
Indices: 67315945--67315993 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
67315935 GATTTTGATA
*
67315945 ATGATATGTATGATATGCAC
1 ATGACATGTATGATATGCAC
67315965 ATGACATGTATGATATGCAC
1 ATGACATGTATGATATGCAC
*
67315985 ATGAGATGT
1 ATGACATGT
67315994 TCATAAATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ATGACATGTATGATATGCAC
Found at i:67316073 original size:24 final size:23
Alignment explanation
Indices: 67316044--67316226 Score: 231
Period size: 22 Copynumber: 8.1 Consensus size: 23
67316034 AGTGAAAAGT
67316044 TAAAAGGGCTTATGCCCCAGTTA
1 TAAAAGGGCTTATGCCCCAGTTA
67316067 TCAAAAGGGCTTATGCCCCAGTTA
1 T-AAAAGGGCTTATGCCCCAGTTA
67316091 TCAAAAGGGCTTATG--CCAGTTA
1 T-AAAAGGGCTTATGCCCCAGTTA
67316113 TCAAAAGGGCTTATGCCCCAGTTA
1 T-AAAAGGGCTTATGCCCCAGTTA
67316137 T-AAAGGGCTTATGCCCCAGTTA
1 TAAAAGGGCTTATGCCCCAGTTA
67316159 T-AAAGGGCTTATG-CCCAG-T-
1 TAAAAGGGCTTATGCCCCAGTTA
*
67316178 T-AAAGGGCTTTTGCCCCAGTTA
1 TAAAAGGGCTTATGCCCCAGTTA
*
67316200 TTAAAAGAGGC-TAGGCCTCCAGTTA
1 -TAAAAG-GGCTTATGCC-CCAGTTA
67316225 TA
1 TA
67316227 TGATAAAGCA
Statistics
Matches: 147, Mismatches: 3, Indels: 19
0.87 0.02 0.11
Matches are distributed among these distances:
19 12 0.08
20 6 0.04
21 6 0.04
22 56 0.38
23 2 0.01
24 55 0.37
25 10 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
TAAAAGGGCTTATGCCCCAGTTA
Found at i:67316120 original size:46 final size:46
Alignment explanation
Indices: 67316044--67316226 Score: 222
Period size: 46 Copynumber: 4.0 Consensus size: 46
67316034 AGTGAAAAGT
67316044 TAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA
1 TAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTA
67316091 TCAAAAGGGCTTATG-CCAGTTATCAAAAGGGCTTATGCCCCAGTTA
1 T-AAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA
67316137 T-AAAGGGCTTATGCCCCAGTTAT--AAAGGGCTTATG-CCCAG-T-
1 TAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTA
* * *
67316178 T-AAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTA
1 TAAAAGGGCTTATG-CCCAGTTATCAAAAG-GGCTTATGCC-CCAGTTA
67316225 TA
1 TA
67316227 TGATAAAGCA
Statistics
Matches: 123, Mismatches: 2, Indels: 21
0.84 0.01 0.14
Matches are distributed among these distances:
41 22 0.18
42 1 0.01
43 12 0.10
44 28 0.23
45 4 0.03
46 41 0.33
47 2 0.02
48 13 0.11
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
TAAAAGGGCTTATGCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA
Found at i:67316452 original size:31 final size:31
Alignment explanation
Indices: 67316417--67316480 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
67316407 CGTTTACAGT
67316417 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
67316448 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
67316479 AA
1 AA
67316481 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:67319269 original size:27 final size:27
Alignment explanation
Indices: 67319202--67319307 Score: 92
Period size: 27 Copynumber: 4.0 Consensus size: 27
67319192 TTTAGTTTAC
* * *
67319202 TAAAATTACCGAAATATCCT-TAGTTTA
1 TAAAATTACCGAAATACCCTCGA-TTTG
* * *
67319229 AAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* * *
67319256 TAAATTTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCCTCGATTTG
67319283 TAAAATTACC-AAAGTACCC-CGATTT
1 TAAAATTACCGAAA-TACCCTCGATTT
67319308 ACAGAATTAC
Statistics
Matches: 62, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
26 8 0.13
27 53 0.85
28 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTG
Found at i:67319342 original size:27 final size:27
Alignment explanation
Indices: 67319297--67319506 Score: 275
Period size: 27 Copynumber: 7.8 Consensus size: 27
67319287 ATTACCAAAG
67319297 TACCC-CGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67319323 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
67319350 TACCCT-GATTTACATG-ATTATCGTTT
1 TACCCTCGATTTACA-GAATTACCGTTT
*
67319376 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
67319403 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67319430 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67319457 TACCCTTGATTTACAGAATTACTGGTTT
1 TACCCTCGATTTACAGAATTAC-CGTTT
*
67319485 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
67319507 TAAAATACCC
Statistics
Matches: 161, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 29 0.18
27 108 0.67
28 24 0.15
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:67319559 original size:27 final size:27
Alignment explanation
Indices: 67319499--67319651 Score: 170
Period size: 27 Copynumber: 5.7 Consensus size: 27
67319489 CTCGATTTAC
* *
67319499 AAAATTACTAAAATACCCCTTGGTTTGT
1 AAAATTACCAAAATACCCC-TAGTTTGT
67319527 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
67319554 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * *
67319581 GAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
*
67319608 AAAATTACCAAAATACCCCT-GATT-T
1 AAAATTACCAAAATACCCCTAGTTTGT
67319633 ACAAAGTTA-CAAAATACCC
1 A-AAA-TTACCAAAATACCC
67319652 TTACTTCTAA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.02
26 18 0.17
27 66 0.61
28 22 0.20
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:67319595 original size:54 final size:54
Alignment explanation
Indices: 67319485--67319652 Score: 196
Period size: 54 Copynumber: 3.1 Consensus size: 54
67319475 TTACTGGTTT
* ** *
67319485 TACCCTCGATTTACAAAATTACTAAAATACCCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATA-CCCTTGGTTTGTAAAATTACCAAAA
* * *
67319540 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * ** *
67319594 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTA-CAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
67319647 TACCCT
1 TACCCT
67319653 TACTTCTAAA
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 10 0.10
54 63 0.66
55 23 0.24
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:67319792 original size:27 final size:27
Alignment explanation
Indices: 67319762--67319853 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
67319752 ACCCCTATTA
*
67319762 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
67319789 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
67319816 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
67319843 GGTAAAATGAC
1 GGTAAAATGAC
67319854 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:67321088 original size:20 final size:20
Alignment explanation
Indices: 67321063--67321121 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
67321053 GATAAACATG
67321063 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
67321083 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
67321103 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
67321122 GATATCATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:67321103 original size:11 final size:11
Alignment explanation
Indices: 67321067--67321121 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
67321057 AACATGATGT
67321067 ATGATATGCAC
1 ATGATATGCAC
* *
67321078 ATGACATG--T
1 ATGATATGCAC
67321087 ATGATATGCAC
1 ATGATATGCAC
*
67321098 ATGATATG--T
1 ATGATATGCAC
67321107 ATGATATGCAC
1 ATGATATGCAC
67321118 ATGA
1 ATGA
67321122 GATATCATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:67321195 original size:23 final size:22
Alignment explanation
Indices: 67321169--67321365 Score: 202
Period size: 24 Copynumber: 9.0 Consensus size: 22
67321159 GAGGAAGTGA
67321169 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-T
67321192 AAAGGGCTTATG-CCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
67321213 CAAAGGGCTTATGCCCCAGTTAT
1 -AAAGGGCTTATGCCCCAGTTAT
*
67321236 CAAAAGGGCTTATGCCCTAGTTATT
1 --AAAGGGCTTATGCCCCAGTTA-T
67321261 AAAAGGGCTTATG-CCC-GTTAT
1 -AAAGGGCTTATGCCCCAGTTAT
67321282 CAAA--GCTT-TG-CCCAGTTA-
1 -AAAGGGCTTATGCCCCAGTTAT
67321300 AAAGGGCTTATGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
67321322 CAAAAGGGCTT-TGCCCCA-TTA-
1 --AAAGGGCTTATGCCCCAGTTAT
*
67321343 AAAGGGC-TAGGCCTCCAGTTAT
1 AAAGGGCTTATGCC-CCAGTTAT
67321365 A
1 A
67321366 TGATAAAGCA
Statistics
Matches: 153, Mismatches: 5, Indels: 33
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.02
18 6 0.04
19 22 0.14
20 5 0.03
21 16 0.10
22 28 0.18
23 30 0.20
24 42 0.27
25 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (22 bp):
AAAGGGCTTATGCCCCAGTTAT
Found at i:67321246 original size:24 final size:24
Alignment explanation
Indices: 67321168--67321339 Score: 219
Period size: 24 Copynumber: 7.8 Consensus size: 24
67321158 GGAGGAAGTG
67321168 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
67321191 TAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
67321214 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
67321237 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
67321261 AAAAGGGCTTATG-CCC-GTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
67321283 -AAA--GCTT-TG-CCCAG-T-T-
1 AAAAGGGCTTATGCCCCAGTTATC
67321299 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
67321323 AAAAGGGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCA
67321340 TTAAAAGGGC
Statistics
Matches: 132, Mismatches: 5, Indels: 24
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.03
18 6 0.05
19 9 0.07
20 2 0.02
21 8 0.06
22 27 0.20
23 32 0.24
24 44 0.33
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:67321281 original size:69 final size:63
Alignment explanation
Indices: 67321168--67321337 Score: 238
Period size: 62 Copynumber: 2.6 Consensus size: 63
67321158 GGAGGAAGTG
67321168 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCAGTTATCAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATCAAA--GCTT-TG-CCCAG
67321232 TTAT
62 -T-T
*
67321236 CAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCC-GTTATCAAAGCTTTGCCCAGTT
1 -AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATCAAAGCTTTGCCCAGTT
*
67321299 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTT-TGCCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
67321338 CATTAAAAGG
Statistics
Matches: 97, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
61 5 0.05
62 32 0.33
63 1 0.01
64 1 0.01
65 5 0.05
66 2 0.02
67 4 0.04
69 32 0.33
70 15 0.15
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (63 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATCAAAGCTTTGCCCAGTT
Found at i:67321590 original size:31 final size:31
Alignment explanation
Indices: 67321555--67321618 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
67321545 CGTTTACAGT
67321555 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
67321586 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
67321617 AA
1 AA
67321619 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:67329614 original size:46 final size:46
Alignment explanation
Indices: 67329564--67329736 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
67329554 TGGTTGAGCA
*
67329564 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
67329610 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
67329657 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67329703 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67329737 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67329720 original size:93 final size:93
Alignment explanation
Indices: 67329561--67329731 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67329551 GGATGGTTGA
* *
67329561 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
67329626 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67329654 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
67329719 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67329732 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67332711 original size:41 final size:41
Alignment explanation
Indices: 67332663--67332745 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
67332653 AGAATGATCA
67332663 TTTGATGTAAATTACGAATCAAAATAGACTATGAATGAATT
1 TTTGATGTAAATTACGAATCAAAATAGACTATGAATGAATT
**
67332704 TTTGATGTAAATTACGAATTGAAATAGACTATGAATGAATT
1 TTTGATGTAAATTACGAATCAAAATAGACTATGAATGAATT
67332745 T
1 T
67332746 GTTAACTGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.36
Consensus pattern (41 bp):
TTTGATGTAAATTACGAATCAAAATAGACTATGAATGAATT
Found at i:67332840 original size:12 final size:14
Alignment explanation
Indices: 67332825--67332856 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
67332815 GTGAGAACAC
67332825 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
67332837 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
67332851 ATGTGT
1 ATGTGT
67332857 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:67332941 original size:50 final size:52
Alignment explanation
Indices: 67332822--67332943 Score: 140
Period size: 52 Copynumber: 2.4 Consensus size: 52
67332812 ATTGTGAGAA
* * * ** *
67332822 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTGTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCCACTAAGTGTACAAGATAGTTGTAGGT
* * *
67332874 CACGTGTGTAGTACTAAGTGTAGGCCATTAAGTGTACCAGATAG-T-TAGGT
1 CACATGTGTAGTACTAAGTGTAGGCCACTAAGTGTACAAGATAGTTGTAGGT
*
67332924 CGCATGTGTAGTACTAAGTG
1 CACATGTGTAGTACTAAGTG
67332944 CAGGAATTAT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 23 0.39
51 1 0.02
52 35 0.59
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (52 bp):
CACATGTGTAGTACTAAGTGTAGGCCACTAAGTGTACAAGATAGTTGTAGGT
Found at i:67334888 original size:15 final size:15
Alignment explanation
Indices: 67334868--67334928 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
67334858 TATGATATTA
67334868 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* *
67334883 TATCTTGAATTTCTC
1 TATCTTGGATTTCTT
* *
67334898 TATATTGGACTTCTT
1 TATCTTGGATTTCTT
* * *
67334913 AATCCTGGTTTTCTT
1 TATCTTGGATTTCTT
67334928 T
1 T
67334929 TTATCTATAT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.16, C:0.16, G:0.11, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:67337442 original size:23 final size:24
Alignment explanation
Indices: 67337404--67337448 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
67337394 TTTTCTCTTC
*
67337404 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
67337428 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
67337449 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:67340224 original size:40 final size:40
Alignment explanation
Indices: 67340180--67340289 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
67340170 TTCACAATTT
* *
67340180 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
67340220 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
67340260 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
67340290 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:67342340 original size:28 final size:28
Alignment explanation
Indices: 67342296--67342365 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
67342286 AGTGAGATTG
*
67342296 GCACTAAGTGTGTGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
67342324 GCACTAAGTGTGCGAGTTTGAATATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
67342352 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67342366 GACTTACTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 33 0.85
29 5 0.13
30 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:67343535 original size:55 final size:52
Alignment explanation
Indices: 67343404--67343599 Score: 214
Period size: 55 Copynumber: 3.6 Consensus size: 52
67343394 GGGTGTTACA
* * *
67343404 CCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAACTTACCAATG
* * *
67343457 CCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATGGTAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-G-AACTTACCAATG
* * *
67343512 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTG
1 CCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATG-AA-CTTACCAA-TG
*
67343567 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTT
67343600 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
52 2 0.02
53 36 0.30
54 9 0.08
55 70 0.59
56 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (52 bp):
CCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAACTTACCAATG
Found at i:67346355 original size:12 final size:14
Alignment explanation
Indices: 67346340--67346371 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
67346330 GTGAGAACAC
67346340 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
67346352 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
67346366 ATGTGT
1 ATGTGT
67346372 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:67346549 original size:50 final size:49
Alignment explanation
Indices: 67346482--67346616 Score: 146
Period size: 50 Copynumber: 2.7 Consensus size: 49
67346472 ACAACTTCGA
* * *
67346482 TCACGTGTGTAGAACTAAGTGCAAGCTACTACGTGTATCATA-TGCTTAGG
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG-TT-GG
* **
67346532 TCACGTATGTAGTACTAAGTATAAGCTACTACGTGTACCAGATTGTTGG
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTGG
* * * * *
67346581 TCGCATGTGTAGTAGTAAGTGCAGGCTACTATGTGT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGT
67346617 GCCAAATAGC
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
49 30 0.43
50 38 0.54
51 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTGG
Found at i:67348717 original size:28 final size:28
Alignment explanation
Indices: 67348648--67348748 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
67348638 GACAAGATTG
* * * *
67348648 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
67348678 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67348706 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
67348735 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67348749 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67348742 original size:29 final size:28
Alignment explanation
Indices: 67348677--67348748 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
67348667 AAAATTGTAC
*
67348677 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
67348705 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
67348734 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67348749 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:67350920 original size:52 final size:50
Alignment explanation
Indices: 67350834--67351066 Score: 162
Period size: 50 Copynumber: 4.6 Consensus size: 50
67350824 ATTGTGAGAA
* * * * * ** *
67350834 CACATGTGTAGTACTATGTGTAGGATGCTATGTGTTTAAGATGGTTGTAGGT
1 CACATGTCTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG-T-TAGGT
* *
67350886 CACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
1 CACATGTCTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
* * * ** * * * *
67350936 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCGAT
1 CACATGTCTAGTACTAAGTGCAGGCTACTATGTGTACAAGA-TAGTTAGGT
* * * * * *
67350987 CACGTGTGTAATACTAAGTGCAAGCTACTACGTGTATC-AGATGGTTAGGT
1 CACATGTCTAGTACTAAGTGCAGGCTACTATGTGTA-CAAGATAGTTAGGT
* * * *
67351037 CACGTATGTAGTACTAAGTGCAAGCTACTA
1 CACATGTCTAGTACTAAGTGCAGGCTACTA
67351067 CTTGTACTGG
Statistics
Matches: 146, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
50 73 0.50
51 38 0.26
52 35 0.24
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTCTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
Found at i:67350953 original size:50 final size:50
Alignment explanation
Indices: 67350881--67351130 Score: 216
Period size: 50 Copynumber: 5.0 Consensus size: 50
67350871 AAGATGGTTG
* * *
67350881 TAGGTCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATAGT
* * * * * *
67350931 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGA-TAGT
* * * * * * *
67350982 TCGATCACGTGTGTAATACTAAGTGCAAGCTACTACGTGTATCAGATGGT
1 TAGGTCACATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATAGT
* * ** *
67351032 TAGGTCACGTATGTAGTACTAAGTGCAAGCTACTACT-TGTACTGGAT-TT
1 TAGGTCACATGTGTAGTACTAAGTGCAAGCTACTA-TGTGTACCAGATAGT
* * * * *
67351081 TTGGTCGCATGTGTAGAGTACTAAGTGCATGCTATTATGCGTACCAGATA
1 TAGGTCACATGTGT--AGTACTAAGTGCAAGCTACTATGTGTACCAGATA
67351131 ACTTCAGTTA
Statistics
Matches: 156, Mismatches: 38, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
49 11 0.07
50 81 0.52
51 64 0.41
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCAGATAGT
Found at i:67351014 original size:101 final size:101
Alignment explanation
Indices: 67350885--67351066 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
67350875 TGGTTGTAGG
* * * * *
67350885 TCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTCTAATACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATATGTAGTAC
*
67350950 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCGA
66 TAAGTGCAAGCTACTATGCGTACCCGACAACTTCGA
* * * *
67350986 TCACGTGTGTAATACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTATGTAGTAC
1 TCACGTGTCTAATACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATATGTAGTAC
67351051 TAAGTGCAAGCTACTA
66 TAAGTGCAAGCTACTA
67351067 CTTGTACTGG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (101 bp):
TCACGTGTCTAATACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATATGTAGTAC
TAAGTGCAAGCTACTATGCGTACCCGACAACTTCGA
Found at i:67361103 original size:80 final size:80
Alignment explanation
Indices: 67361017--67361170 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 80
67361007 AAAGAAAGAG
* * ** * * *
67361017 TAAAAAAAGAAAAAAAATT-CTTCGTAAAATTTAAGTATTATATTGTTTTTCTTATTTTAGTCAT
1 TAAAAAAA-TAAAAAAATTACTTCGTAAAATTCAAGTATTATATTGTAATTATCATTTTAGT-AG
67361081 TTATAAAAAAAAGTATA
64 TTATAAAAAAAAGTATA
*
67361098 TAAAAAAATAAAAAAATTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTT
1 TAAAAAAATAAAAAAATTACTTCGTAAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTT
67361163 ATAAAAAA
66 ATAAAAAA
67361171 GTAAAAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 20 0.31
81 44 0.69
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.39
Consensus pattern (80 bp):
TAAAAAAATAAAAAAATTACTTCGTAAAATTCAAGTATTATATTGTAATTATCATTTTAGTAGTT
ATAAAAAAAAGTATA
Found at i:67363330 original size:16 final size:15
Alignment explanation
Indices: 67363311--67363345 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
67363301 AAAACTGCGA
*
67363311 AAAAATAAGAGAAGAG
1 AAAAATAAGA-AAAAG
67363327 AAAAATAAGAAAAAG
1 AAAAATAAGAAAAAG
67363342 AAAA
1 AAAA
67363346 CAAAAGAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (15 bp):
AAAAATAAGAAAAAG
Found at i:67364934 original size:27 final size:29
Alignment explanation
Indices: 67364904--67365018 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
67364894 ACGCAAGAGC
*
67364904 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
67364931 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
67364960 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * ** *
67364990 ATATGTTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
67365019 GTACAATTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 42 0.53
30 29 0.37
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:67364971 original size:30 final size:29
Alignment explanation
Indices: 67364916--67365018 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
67364906 ATAGTGAATC
67364916 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
67364945 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* *
67364975 CGCACACTTAGTGCTATATGTTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
67365004 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67365019 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 42 0.59
30 29 0.41
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:67365008 original size:59 final size:60
Alignment explanation
Indices: 67364915--67365048 Score: 198
Period size: 59 Copynumber: 2.2 Consensus size: 60
67364905 TATAGTGAAT
* * *
67364915 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * * *
67364974 TCGCACACTTAGTGCTATATGTTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
67365034 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
67365049 CAATCTTGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 46 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:67371996 original size:27 final size:29
Alignment explanation
Indices: 67371966--67372080 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
67371956 ACGCAAGAGC
*
67371966 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
67371993 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
67372022 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * ** *
67372052 ATATGTTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
67372081 GTACAATTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 42 0.53
30 29 0.37
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:67372033 original size:30 final size:29
Alignment explanation
Indices: 67371978--67372080 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
67371968 ATAGTGAATC
67371978 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
67372007 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* *
67372037 CGCACACTTAGTGCTATATGTTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
67372066 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67372081 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 42 0.59
30 29 0.41
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:67372070 original size:59 final size:60
Alignment explanation
Indices: 67371977--67372110 Score: 198
Period size: 59 Copynumber: 2.2 Consensus size: 60
67371967 TATAGTGAAT
* * *
67371977 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * * *
67372036 TCGCACACTTAGTGCTATATGTTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
67372096 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
67372111 CAATCTTGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 46 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:67372645 original size:25 final size:24
Alignment explanation
Indices: 67372596--67372640 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
67372586 TCCACACCCA
67372596 TTTTTTTTTTCATCATTTTCTTTCT
1 TTTTTTTTTTCA-CATTTTCTTTCT
67372621 TTTTTTTTTTC-CA-TTTCTTT
1 TTTTTTTTTTCACATTTTCTTT
67372641 ATTCTCCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
25 11 0.55
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTTTTTTCACATTTTCTTTCT
Found at i:67375633 original size:30 final size:30
Alignment explanation
Indices: 67375548--67375677 Score: 171
Period size: 29 Copynumber: 4.5 Consensus size: 30
67375538 GACAAGATTG
* * * *
67375548 GCACTAAGTGTGCG-GTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
67375577 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
67375605 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
67375635 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
67375664 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67375678 GATTCACTAT
Statistics
Matches: 92, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 34 0.37
30 32 0.35
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:67383102 original size:40 final size:40
Alignment explanation
Indices: 67383057--67383223 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
67383047 CGGAATATAA
67383057 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
67383097 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67383137 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67383177 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67383216 CCGGATAT
1 CCGGATAT
67383224 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67383207 original size:80 final size:79
Alignment explanation
Indices: 67383073--67383223 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67383063 ATAATCACGT
*
67383073 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
67383138 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67383153 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
67383216 CCGGATAT
64 CCGGATAT
67383224 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:67391080 original size:40 final size:40
Alignment explanation
Indices: 67391035--67391201 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
67391025 CGGAATATAA
67391035 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
67391075 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67391115 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67391155 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67391194 CCGGATAT
1 CCGGATAT
67391202 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67391185 original size:80 final size:79
Alignment explanation
Indices: 67391051--67391201 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67391041 ATAATCACGT
*
67391051 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
67391116 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67391131 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
67391194 CCGGATAT
64 CCGGATAT
67391202 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:67398668 original size:45 final size:45
Alignment explanation
Indices: 67398605--67398699 Score: 181
Period size: 45 Copynumber: 2.1 Consensus size: 45
67398595 GATGAGCTCA
*
67398605 TCATGCTACACACTTTCAAGACATTATCATTTCATCTCATAATTC
1 TCATGCAACACACTTTCAAGACATTATCATTTCATCTCATAATTC
67398650 TCATGCAACACACTTTCAAGACATTATCATTTCATCTCATAATTC
1 TCATGCAACACACTTTCAAGACATTATCATTTCATCTCATAATTC
67398695 TCATG
1 TCATG
67398700 TCATGTCTAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (45 bp):
TCATGCAACACACTTTCAAGACATTATCATTTCATCTCATAATTC
Found at i:67405630 original size:16 final size:16
Alignment explanation
Indices: 67405589--67405632 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
67405579 TTAGCTGCAC
67405589 AAAAAGAAAAAAGGAT
1 AAAAAGAAAAAAGGAT
* * * *
67405605 TAGAATAAAAAATGAT
1 AAAAAGAAAAAAGGAT
67405621 AAAAAGAAAAAA
1 AAAAAGAAAAAA
67405633 ATACTTACCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (16 bp):
AAAAAGAAAAAAGGAT
Found at i:67407487 original size:37 final size:36
Alignment explanation
Indices: 67407437--67407523 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
67407427 TGCGAAGTCT
67407437 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
67407473 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
67407510 TCACCCGGAACATA
1 T-ACCCGG-ACATA
67407524 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:67407651 original size:49 final size:47
Alignment explanation
Indices: 67407624--67407889 Score: 416
Period size: 47 Copynumber: 5.6 Consensus size: 47
67407614 CACGTCATTA
67407624 GGCC-TTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCAC--ATATACACACTTTCACATTCATCACATC
67407672 GGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATC
67407719 GGCCATTAGGCCTTATCACAATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCAC-ATATACACACTTTCACATTCATCACATC
67407767 GGCCATTAGGCCTTATCACACATATACACACTTTCACA-T--TCACATC
1 GGCCATTAGGCCTTAT--CACATATACACACTTTCACATTCATCACATC
*
67407813 -GCCATTAGGCCTTATCATAGATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATC--ACATATACACACTTTCACATTCATCACATC
*
67407861 GGCCATTAGGCCTTATCACATATATACAC
1 GGCCATTAGGCCTTATCACATATACACAC
67407890 ACTCATACAT
Statistics
Matches: 205, Mismatches: 3, Indels: 21
0.90 0.01 0.09
Matches are distributed among these distances:
43 1 0.00
45 33 0.16
46 8 0.04
47 57 0.28
48 56 0.27
49 47 0.23
50 3 0.01
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (47 bp):
GGCCATTAGGCCTTATCACATATACACACTTTCACATTCATCACATC
Found at i:67407692 original size:22 final size:22
Alignment explanation
Indices: 67407664--67407738 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
67407654 TTTCACATTC
67407664 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
67407686 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
67407710 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
67407733 ATCACA
1 ATCACA
67407739 ATATACACAC
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 14 0.39
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.28
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:67407890 original size:49 final size:48
Alignment explanation
Indices: 67407624--67407892 Score: 451
Period size: 48 Copynumber: 5.6 Consensus size: 48
67407614 CACGTCATTA
67407624 GGCC-TTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACA-ATATACACACTTTCACATTCATCACATC
67407672 GGCCATTAGGCCTTATCAC-ATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACAATATACACACTTTCACATTCATCACATC
67407719 GGCCATTAGGCCTTATCACAATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACAATATACACACTTTCACATTCATCACATC
67407767 GGCCATTAGGCCTTATCACACATATACACACTTTCACA-T--TCACATC
1 GGCCATTAGGCCTTATCACA-ATATACACACTTTCACATTCATCACATC
*
67407813 -GCCATTAGGCCTTATCATAGATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACA-ATATACACACTTTCACATTCATCACATC
67407861 GGCCATTAGGCCTTATCACATATATACACACT
1 GGCCATTAGGCCTTATCACA-ATATACACACT
67407893 CATACATATT
Statistics
Matches: 210, Mismatches: 4, Indels: 13
0.93 0.02 0.06
Matches are distributed among these distances:
45 35 0.17
46 8 0.04
47 47 0.22
48 60 0.29
49 60 0.29
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (48 bp):
GGCCATTAGGCCTTATCACAATATACACACTTTCACATTCATCACATC
Found at i:67410699 original size:40 final size:41
Alignment explanation
Indices: 67410655--67410752 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 41
67410645 TCGATTGTCC
* * **
67410655 TCGGGACATAGCCCGG-TTATAGTGA-TTCGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAAAGCCT
67410695 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
*
67410736 TCGGGACTTAGCCCGGA
1 TCGGGACATAGCCCGGA
67410753 CACCATTCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.39
41 29 0.59
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
Found at i:67411537 original size:40 final size:40
Alignment explanation
Indices: 67411493--67411621 Score: 195
Period size: 40 Copynumber: 3.2 Consensus size: 40
67411483 CCAGCATGAT
* * *
67411493 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACATAGTCCGGATACATCACTAGCACGAA
* *
67411533 TGCTCTTCGAAACATAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACATAGTCCGGATACATCACTAGCACGAA
* *
67411573 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACATAGTCCGGATACATCACTAGCACGAA
67411613 TGCTCTTCG
1 TGCTCTTCG
67411622 AACTTAGCCA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGAACATAGTCCGGATACATCACTAGCACGAA
Found at i:67411643 original size:29 final size:30
Alignment explanation
Indices: 67411601--67411660 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
67411591 CCGGATACAT
67411601 CACTAGCACGAATGCTCTTC-GAACTTAGC
1 CACTAGCACGAATGCTCTTCGGAACTTAGC
*
67411630 CACTAGGACGAATGCTCTTCGGAACTTAGC
1 CACTAGCACGAATGCTCTTCGGAACTTAGC
67411660 C
1 C
67411661 CGGATACATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (30 bp):
CACTAGCACGAATGCTCTTCGGAACTTAGC
Found at i:67413593 original size:37 final size:36
Alignment explanation
Indices: 67413552--67413638 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
67413542 TGCGAAGTCT
*
67413552 TACCCGGATATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
67413588 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
67413625 TCACCCGGAACATA
1 T-ACCCGG-ACATA
67413639 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:67413807 original size:49 final size:49
Alignment explanation
Indices: 67413745--67414314 Score: 1025
Period size: 49 Copynumber: 11.7 Consensus size: 49
67413735 TCAGCCATTA
*
67413745 GGCC-TTAGGCCTTATCACATATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
67413793 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
*
67413842 GGCCATTAGGCCTTATCACCCATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
* *
67413891 GGCCATTAGGCCTTATCACGCATATACACACTTTCACATTCATGACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
*
67413940 AGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
* *
67413989 GGCTATTAGGCCTTATCACACATATACACACGTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
*
67414038 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATGACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
*
67414087 GGCCATTAGGCCTTATCACAGATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
*
67414136 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATGACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
*
67414185 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATGACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
67414234 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
1 GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
*
67414283 GGCCATTAGGCCTTATCACATATATACACACT
1 GGCCATTAGGCCTTATCACACATATACACACT
67414315 CATACATATT
Statistics
Matches: 502, Mismatches: 19, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
48 4 0.01
49 498 0.99
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.29
Consensus pattern (49 bp):
GGCCATTAGGCCTTATCACACATATACACACTTTCACATTCATCACATC
Found at i:67419032 original size:27 final size:27
Alignment explanation
Indices: 67418994--67419054 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
67418984 TAACATAGAG
67418994 TAAGCATTTAAGCTTAGTAAGTTCGTA
1 TAAGCATTTAAGCTTAGTAAGTTCGTA
67419021 TAAGCATTTAAGCTTAGTAAGTTCGTA
1 TAAGCATTTAAGCTTAGTAAGTTCGTA
67419048 TAA-CATT
1 TAAGCATT
67419055 GAATTTAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (27 bp):
TAAGCATTTAAGCTTAGTAAGTTCGTA
Found at i:67420702 original size:28 final size:28
Alignment explanation
Indices: 67420670--67420725 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
67420660 AAGGGAAGAA
*
67420670 AAGCTCCATTATTGTACTTTGAAGCATT
1 AAGCTCCATTATTGCACTTTGAAGCATT
67420698 AAGCTCCATTATTGCACTTTGAAGCATT
1 AAGCTCCATTATTGCACTTTGAAGCATT
67420726 TGGCCATAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (28 bp):
AAGCTCCATTATTGCACTTTGAAGCATT
Found at i:67431555 original size:49 final size:49
Alignment explanation
Indices: 67431500--67431867 Score: 576
Period size: 47 Copynumber: 7.7 Consensus size: 49
67431490 AGATTTTAAC
67431500 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
67431549 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
67431598 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
67431645 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
*
67431694 GTGATAAATGTGAAAGTGTATATA-A-GTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * *
67431741 GTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * * * *
67431788 GTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
*
67431835 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
67431868 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 10, Indels: 18
0.91 0.03 0.05
Matches are distributed among these distances:
45 6 0.02
46 4 0.01
47 164 0.54
48 5 0.02
49 122 0.41
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:67431640 original size:96 final size:96
Alignment explanation
Indices: 67431500--67431867 Score: 591
Period size: 96 Copynumber: 3.9 Consensus size: 96
67431490 AGATTTTAAC
67431500 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
67431565 TGTATATATATGTGATAAGGCCTAATGGCCGAT
64 TGTATATATATGTGATAAGGCCTAATGGCCGAT
67431598 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
67431663 TATATATATGTGATAAGGCCTAATGGCCGAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
* *
67431694 GTGATAAATGTGAAAGTGTATATAAGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
67431757 TGTATATATGTGATAAGGCCGAATGGCCAAT
66 TATATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
67431788 GTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
67431853 TATA-A-ATGTGATAAG
66 TATATATATGTGATAAG
67431868 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 90 0.35
95 7 0.03
96 139 0.55
98 18 0.07
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:67452914 original size:40 final size:40
Alignment explanation
Indices: 67452866--67453055 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
67452856 ATAACAACTC
67452866 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
67452906 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
67452946 GCACAAATGCCTTCGAGTCTTAGCCCGGACATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
67452986 GCACAAATGCCTT-GGATCTTAGTCC-GATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
67453024 GCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67453056 CATTCGAATA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 21 0.16
39 20 0.16
40 87 0.68
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:67462803 original size:10 final size:10
Alignment explanation
Indices: 67462788--67462819 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
67462778 AGCCGAATAG
67462788 AAGAAAGAAA
1 AAGAAAGAAA
67462798 AAGAAAGAAA
1 AAGAAAGAAA
*
67462808 AAAAAAGAAA
1 AAGAAAGAAA
67462818 AA
1 AA
67462820 AAGCTCTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:67462807 original size:14 final size:14
Alignment explanation
Indices: 67462788--67462822 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
67462778 AGCCGAATAG
67462788 AAGAAAGAAAAAGA
1 AAGAAAGAAAAAGA
*
67462802 AAGAAAAAAAAAGA
1 AAGAAAGAAAAAGA
*
67462816 AAAAAAG
1 AAGAAAG
67462823 CTCTCATGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAGAAAGAAAAAGA
Found at i:67464155 original size:39 final size:40
Alignment explanation
Indices: 67464058--67464238 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
67464048 ATGATGTCCA
* *
67464058 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
*
67464098 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* *
67464138 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* *
67464177 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
* * *
67464217 AGCTATGTCCCGAAGGTATTTG
1 GGCTAAGTCCCGAAGGCATTTG
67464239 AATGAGTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.30
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:67464191 original size:79 final size:80
Alignment explanation
Indices: 67464058--67464232 Score: 214
Period size: 79 Copynumber: 2.2 Consensus size: 80
67464048 ATGATGTCCA
* *
67464058 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
67464123 GAGTTACTAATTCCG
66 GAGTTACTAATTCCG
* * **
67464138 GGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGT
*
67464200 GCGAGTTACT-ATAACCG
64 GCGAGTTACTAAT-TCCG
* *
67464217 AGCTATGTCCCGAAGG
1 GGCTAAGTCCCGAAGG
67464233 TATTTGAATG
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.04
79 58 0.71
80 21 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
GAGTTACTAATTCCG
Found at i:67464260 original size:79 final size:77
Alignment explanation
Indices: 67464088--67464271 Score: 183
Period size: 79 Copynumber: 2.3 Consensus size: 77
67464078 GTGCTAAGTG
* * *
67464088 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGG
**
67464153 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* *
67464167 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAA
* * *
67464231 GGTATTTGAATGAG-T
62 GGCATTGGAACGAGTT
*
67464246 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
67464272 TACGTGATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 27 0.31
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:67466045 original size:17 final size:19
Alignment explanation
Indices: 67466023--67466064 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
67466013 TTTCTGTTGG
67466023 TGACATT-TC-CAACTCTT
1 TGACATTGTCACAACTCTT
67466040 TGACATTGGTCACAACTCTT
1 TGACATT-GTCACAACTCTT
67466060 T-ACAT
1 TGACAT
67466065 ATGCATATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 7 0.32
19 6 0.27
20 9 0.41
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (19 bp):
TGACATTGTCACAACTCTT
Found at i:67474681 original size:27 final size:28
Alignment explanation
Indices: 67474651--67474750 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
67474641 ATAGTGAGTC
67474651 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
67474678 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
67474706 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
67474737 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67474751 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:67475602 original size:7 final size:7
Alignment explanation
Indices: 67475592--67475616 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
67475582 TCATCACCAC
67475592 AACATCA
1 AACATCA
67475599 AACATCA
1 AACATCA
67475606 AACATCA
1 AACATCA
67475613 AACA
1 AACA
67475617 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:67483264 original size:40 final size:39
Alignment explanation
Indices: 67483220--67483401 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
67483210 GTTCAAAACA
* * ** * *
67483220 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
67483260 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
67483300 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
67483339 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
67483378 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
67483402 CTCAAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:67483331 original size:39 final size:39
Alignment explanation
Indices: 67483250--67483402 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
67483240 TATGGTAACC
* *
67483250 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
67483290 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
67483329 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
67483368 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
67483403 TCAAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:67496493 original size:24 final size:24
Alignment explanation
Indices: 67496463--67496753 Score: 510
Period size: 24 Copynumber: 12.1 Consensus size: 24
67496453 GAATGTGACT
* *
67496463 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
67496487 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
67496511 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
67496535 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
67496559 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
67496583 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
67496607 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
67496631 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
67496655 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
67496679 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
67496703 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
67496727 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
67496751 ATA
1 ATA
67496754 TGGTCTTTGC
Statistics
Matches: 259, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 259 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:67499437 original size:21 final size:22
Alignment explanation
Indices: 67499411--67499465 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
67499401 ATGGCCTCCA
*
67499411 ACACGGGCGTGTCCC-AGGGTC
1 ACACGGGCGTGTCCCTAGGGCC
* *
67499432 ACACGGGCATGTCCCTTGGGCC
1 ACACGGGCGTGTCCCTAGGGCC
67499454 ACACGGGCGTGT
1 ACACGGGCGTGT
67499466 GAGCCCTGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.15, C:0.33, G:0.36, T:0.16
Consensus pattern (22 bp):
ACACGGGCGTGTCCCTAGGGCC
Found at i:67499459 original size:22 final size:21
Alignment explanation
Indices: 67499411--67499461 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
67499401 ATGGCCTCCA
* *
67499411 ACACGGGCGTGTCCCAGGGTC
1 ACACGGGCATGTCCCAGGGCC
*
67499432 ACACGGGCATGTCCCTTGGGCC
1 ACACGGGCATGTCCC-AGGGCC
67499454 ACACGGGC
1 ACACGGGC
67499462 GTGTGAGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.16, C:0.35, G:0.35, T:0.14
Consensus pattern (21 bp):
ACACGGGCATGTCCCAGGGCC
Found at i:67500056 original size:22 final size:25
Alignment explanation
Indices: 67500004--67500055 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
67499994 ATGGTTTACA
67500004 TAGTACCTGAGAGCAAACCCTGCTG
1 TAGTACCTGAGAGCAAACCCTGCTG
*
67500029 TAGTACCTGAGAGCAAACCCTGTTG
1 TAGTACCTGAGAGCAAACCCTGCTG
67500054 TA
1 TA
67500056 CAACGACCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (25 bp):
TAGTACCTGAGAGCAAACCCTGCTG
Found at i:67507184 original size:29 final size:28
Alignment explanation
Indices: 67507152--67507213 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
67507142 CCGGGTAGGT
** *
67507152 CATATAAATGTTATTTGGGCCTATTGGGC
1 CATATAAATGAGA-TTGGGCCTAGTGGGC
*
67507181 CATATGAATGAGATTGGGCCTAGTGGGC
1 CATATAAATGAGATTGGGCCTAGTGGGC
67507209 CATAT
1 CATAT
67507214 GCATGTATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 19 0.66
29 10 0.34
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (28 bp):
CATATAAATGAGATTGGGCCTAGTGGGC
Found at i:67511491 original size:34 final size:34
Alignment explanation
Indices: 67511419--67511492 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 34
67511409 CATGGCAAAG
* *
67511419 TGTGAAACGTAGGTATGGTATTTCCATACCGAGC
1 TGTGAAACATAGGTATGGTATTTCCATACCAAGC
* * * *
67511453 TGTGAAATATAGGTATGGTGTTTCCATACTAAGT
1 TGTGAAACATAGGTATGGTATTTCCATACCAAGC
67511487 TGTGAA
1 TGTGAA
67511493 TCCTGACACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (34 bp):
TGTGAAACATAGGTATGGTATTTCCATACCAAGC
Found at i:67512772 original size:18 final size:18
Alignment explanation
Indices: 67512745--67512785 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
67512735 TGAGTTATAT
67512745 GTTG-AAATATTCAATTG
1 GTTGAAAATATTCAATTG
*
67512762 GTTGAAAATATTTAATTG
1 GTTGAAAATATTCAATTG
67512780 GTTGAA
1 GTTGAA
67512786 TTGTATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (18 bp):
GTTGAAAATATTCAATTG
Found at i:67515623 original size:24 final size:24
Alignment explanation
Indices: 67515596--67515654 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
67515586 TAGCTCAAAA
67515596 GAGCTTACTGTTTTCAGCTCATTG
1 GAGCTTACTGTTTTCAGCTCATTG
* * *
67515620 GAGCTTACCG-TTTCAGCTCGTTT
1 GAGCTTACTGTTTTCAGCTCATTG
*
67515643 GAGCTTATTGTT
1 GAGCTTACTGTT
67515655 CAGCTTGTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
23 19 0.66
24 10 0.34
ACGTcount: A:0.15, C:0.20, G:0.22, T:0.42
Consensus pattern (24 bp):
GAGCTTACTGTTTTCAGCTCATTG
Found at i:67515659 original size:22 final size:22
Alignment explanation
Indices: 67515608--67515676 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
67515598 GCTTACTGTT
* * **
67515608 TTCAGCTCATTGGAGCTTACCG
1 TTCAGCTCGTTTGAGCTTATTG
67515630 TTTCAGCTCGTTTGAGCTTATTG
1 -TTCAGCTCGTTTGAGCTTATTG
* *
67515653 TTCAGCTTGTATGAGCTTATTG
1 TTCAGCTCGTTTGAGCTTATTG
67515675 TT
1 TT
67515677 TATCAGCTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 22 0.55
23 18 0.45
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (22 bp):
TTCAGCTCGTTTGAGCTTATTG
Found at i:67521130 original size:43 final size:43
Alignment explanation
Indices: 67521083--67521183 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 43
67521073 CCCAGATATA
* * *
67521083 GTCTTACAAGTTATCACA-TATTGATGCCACTGTCCC-ACACAGG
1 GTCTTACAAGTAATCA-ATTAATGATGCCAATGTCCCGA-ACAGG
* * *
67521126 GTCTTACACGTAATTAATTAATGATGCCAATGTCCCGAACATG
1 GTCTTACAAGTAATCAATTAATGATGCCAATGTCCCGAACAGG
*
67521169 GTCTTACACGTAATC
1 GTCTTACAAGTAATC
67521184 CCAATACAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 1 0.02
43 47 0.96
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
GTCTTACAAGTAATCAATTAATGATGCCAATGTCCCGAACAGG
Found at i:67529050 original size:29 final size:28
Alignment explanation
Indices: 67529018--67529120 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
67529008 GGGACGAGAT
* *
67529018 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
67529047 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
67529076 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
67529105 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67529121 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:67532117 original size:40 final size:40
Alignment explanation
Indices: 67532054--67532221 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
67532044 CATTTGAATG
* * *
67532054 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
67532094 ATATCCGGGCTAAGACCCAAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
67532134 ATATCCGGGCTAAGACCCGAAGGCAATTGTTCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
67532174 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
67532214 ATATCCGG
1 ATATCCGG
67532222 TCAAATCCCG
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:67545597 original size:44 final size:44
Alignment explanation
Indices: 67545536--67545634 Score: 175
Period size: 44 Copynumber: 2.3 Consensus size: 44
67545526 GGTTATATGA
67545536 GGCACTAAA-TGTACGATACCGATATAGCTTCGTTTAATGTAAT
1 GGCACTAAAGTGTACGATACCGATATAGCTTCGTTTAATGTAAT
*
67545579 GGCACTAAAGTGTACGATACCGATATAGCTTCGTTTAATGTGAT
1 GGCACTAAAGTGTACGATACCGATATAGCTTCGTTTAATGTAAT
67545623 GGCACT-AAGTGT
1 GGCACTAAAGTGT
67545635 GCAAGATCGT
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
43 15 0.28
44 39 0.72
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31
Consensus pattern (44 bp):
GGCACTAAAGTGTACGATACCGATATAGCTTCGTTTAATGTAAT
Found at i:67545649 original size:43 final size:44
Alignment explanation
Indices: 67545536--67545653 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 44
67545526 GGTTATATGA
* *
67545536 GGCACTAAA-TGTACGATACCGATATAGCTTCGTTTAATGTAAT
1 GGCACTAAAGTGTACAAGACCGATATAGCTTCGTTTAATGTAAT
* * *
67545579 GGCACTAAAGTGTACGATACCGATATAGCTTCGTTTAATGTGAT
1 GGCACTAAAGTGTACAAGACCGATATAGCTTCGTTTAATGTAAT
* * *
67545623 GGCACT-AAGTGTGCAAGATCGTTATAGCTTC
1 GGCACTAAAGTGTACAAGACCGATATAGCTTC
67545654 AGCTAATCAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 29 0.43
44 39 0.57
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
GGCACTAAAGTGTACAAGACCGATATAGCTTCGTTTAATGTAAT
Found at i:67548256 original size:43 final size:42
Alignment explanation
Indices: 67548128--67548289 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 42
67548118 CGATATGTGT
* * * * *
67548128 TTTCGTATAAGACCACGTCAGGGACATTGGCATCGACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACAATGGCATCGA-TTTTGA
* * *
67548171 TTTACGAGTAAAACCATGTCTGGGAC-ATCGGCATTG-TATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACAAT-GGCATCGAT-TTTGA
*
67548214 TTTCGTGTAAGACCTTGTCTGGGACAATGGCATCGATGTTTGA
1 TTTCGTGTAAGACCATGTCTGGGACAATGGCATCGAT-TTTGA
* * * * * *
67548257 TTACATGTAAGACAACGTTTGGGACATTGGCAT
1 TTTCGTGTAAGACCATGTCTGGGACAATGGCAT
67548290 TGTACAAGTT
Statistics
Matches: 94, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 26 0.28
43 45 0.48
44 23 0.24
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACAATGGCATCGATTTTGA
Found at i:67549355 original size:30 final size:30
Alignment explanation
Indices: 67549321--67549389 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
67549311 GTCAAGAGGT
67549321 CATGTGTGGAACACAACCATGGCACATGGG
1 CATGTGTGGAACACAACCATGGCACATGGG
67549351 CATGTGTGGAACACAACCATGGCACATGGG
1 CATGTGTGGAACACAACCATGGCACATGGG
67549381 CATGTGTGG
1 CATGTGTGG
67549390 CCATTTCGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.28, C:0.22, G:0.32, T:0.19
Consensus pattern (30 bp):
CATGTGTGGAACACAACCATGGCACATGGG
Found at i:67551046 original size:18 final size:18
Alignment explanation
Indices: 67551025--67551063 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
67551015 AATAACAGTC
* *
67551025 AACAGTGCAGTAACGATA
1 AACAGTGCAGAAACAATA
*
67551043 AACAGTGTAGAAACAATA
1 AACAGTGCAGAAACAATA
67551061 AAC
1 AAC
67551064 GGTATGCAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (18 bp):
AACAGTGCAGAAACAATA
Found at i:67551493 original size:27 final size:27
Alignment explanation
Indices: 67551391--67551582 Score: 168
Period size: 27 Copynumber: 7.1 Consensus size: 27
67551381 AAACATACAT
* *
67551391 CATATAGGGAAAAATAGTCATCTTACCA
1 CATA-AGGGCAAAATAGTCATTTTACCA
* * *
67551419 TATAAGGGCAGAATAGTCATCTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
67551446 CATAAGGGCAAAATAGTCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
**
67551473 CATAAGGGCAAAATAGTCATTCAACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
* * * * * * *
67551500 CATAAAGACAAAACAATAATTCTACCG
1 CATAAGGGCAAAATAGTCATTTTACCA
* * * *
67551527 CATAACGGAAAAATAGTCATTTCATCA
1 CATAAGGGCAAAATAGTCATTTTACCA
* * * * *
67551554 CATAGGGGTAATACAATCATTTTACCA
1 CATAAGGGCAAAATAGTCATTTTACCA
67551581 CA
1 CA
67551583 AAAGAGGTCT
Statistics
Matches: 131, Mismatches: 33, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
27 128 0.98
28 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.24
Consensus pattern (27 bp):
CATAAGGGCAAAATAGTCATTTTACCA
Found at i:67553960 original size:20 final size:20
Alignment explanation
Indices: 67553935--67554002 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
67553925 TGTCTCATAA
*
67553935 TCATGAACCCAGACCACAAC
1 TCATGAACTCAGACCACAAC
** * *
67553955 TCATGAGTTCAGATCACATAAA
1 TCATGAACTCAGA-C-CACAAC
*
67553977 TCATGAACTCAGACCGCAAC
1 TCATGAACTCAGACCACAAC
67553997 TCATGA
1 TCATGA
67554003 GTTCAGATCA
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
20 19 0.53
21 2 0.06
22 15 0.42
ACGTcount: A:0.38, C:0.29, G:0.13, T:0.19
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:67553990 original size:42 final size:42
Alignment explanation
Indices: 67553933--67554017 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
67553923 TGTGTCTCAT
67553933 AATCATGAACCCAGACCACAACTCATGAGTTCAGATCACATA
1 AATCATGAACCCAGACCACAACTCATGAGTTCAGATCACATA
* *
67553975 AATCATGAACTCAGACCGCAACTCATGAGTTCAGATCACATA
1 AATCATGAACCCAGACCACAACTCATGAGTTCAGATCACATA
67554017 A
1 A
67554018 TTGTCCTAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (42 bp):
AATCATGAACCCAGACCACAACTCATGAGTTCAGATCACATA
Found at i:67554008 original size:20 final size:20
Alignment explanation
Indices: 67553944--67554014 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
67553934 ATCATGAACC
67553944 CAGACCACAACTCATGAGTT
1 CAGACCACAACTCATGAGTT
* * **
67553964 CAGATCACATAAATCATGAACT
1 CAGA-C-CACAACTCATGAGTT
*
67553986 CAGACCGCAACTCATGAGTT
1 CAGACCACAACTCATGAGTT
*
67554006 CAGATCACA
1 CAGACCACA
67554015 TAATTGTCCT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
20 21 0.55
21 2 0.05
22 15 0.39
ACGTcount: A:0.38, C:0.28, G:0.14, T:0.20
Consensus pattern (20 bp):
CAGACCACAACTCATGAGTT
Found at i:67556880 original size:25 final size:25
Alignment explanation
Indices: 67556851--67556898 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67556841 TTATAACATG
* * *
67556851 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
67556876 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
67556899 GTTTTCATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:67559635 original size:28 final size:29
Alignment explanation
Indices: 67559568--67559668 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
67559558 ATAGTGAATC
*
67559568 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
67559597 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
67559625 CGCACACTTAGTGCTGTACAATTTTAAACA
1 CGCACACTTAGTGCTATATAA-TTCAAACT
67559655 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67559669 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:67564025 original size:40 final size:40
Alignment explanation
Indices: 67563981--67564208 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
67563971 GCTACTTGCT
67563981 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
67564021 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
67564061 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
67564101 CAAATGCCTTCGGGACTTAGCTCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
67564141 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
67564180 CAAATGCCTTCAGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
67564209 CATCCGAATA
Statistics
Matches: 174, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.18
40 140 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:67571964 original size:40 final size:40
Alignment explanation
Indices: 67571920--67572145 Score: 345
Period size: 40 Copynumber: 5.7 Consensus size: 40
67571910 GCTACTTGCT
67571920 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
67571960 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCAG-A
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTC-GCA
67572000 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
67572040 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCG--
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
67572078 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
67572117 CAAATGCCTTCGGGACTTAGCCCTGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
67572146 CATCCGAATA
Statistics
Matches: 172, Mismatches: 7, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
36 1 0.01
37 17 0.10
38 14 0.08
39 15 0.09
40 123 0.72
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:67578610 original size:20 final size:20
Alignment explanation
Indices: 67578544--67578610 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
67578534 ATTTTGATAA
*
67578544 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
67578564 ACATGACATGTATGATATAC
1 ACATGATATGTATGATATGC
67578584 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
67578604 GCATGAT
1 ACATGAT
67578611 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:67578690 original size:23 final size:23
Alignment explanation
Indices: 67578660--67578754 Score: 172
Period size: 23 Copynumber: 4.1 Consensus size: 23
67578650 AGGAAGTGAA
67578660 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
67578683 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
67578706 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
67578729 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
67578752 AAA
1 AAA
67578755 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:67579004 original size:31 final size:31
Alignment explanation
Indices: 67578969--67579032 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
67578959 CGTTTACAGT
*
67578969 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
67579000 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
67579031 AA
1 AA
67579033 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:67579990 original size:37 final size:37
Alignment explanation
Indices: 67579937--67580039 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
67579927 TCGAATAGTC
*
67579937 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
67579974 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
67580011 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
67580040 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Done.