Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 225 of 328
Found at i:67580238 original size:48 final size:48
Alignment explanation
Indices: 67580180--67581047 Score: 1385
Period size: 48 Copynumber: 18.0 Consensus size: 48
67580170 ATATACACAC
* * *
67580180 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* * *
67580228 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* * *
67580276 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
67580324 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATATAT
* *
67580374 ATCTCATACATATTTCATATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
67580422 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
67580470 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
67580518 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
67580566 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
67580614 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
67580662 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
67580710 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* * * *
67580758 ATCTCATACATATATCACACTAGCCATTCAGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
67580806 ATCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
67580854 ATCTCATACATATTTCATTTTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
67580902 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* * *
67580950 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* * *
67580998 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
67581046 AT
1 AT
67581048 ATTTATCTTG
Statistics
Matches: 772, Mismatches: 46, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
48 728 0.94
50 44 0.06
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:67594394 original size:41 final size:40
Alignment explanation
Indices: 67594338--67594419 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 40
67594328 ACTGATGCCG
67594338 TTTGTTCTATAGAAACTAGACTCAAAGAGGAAATTATACA
1 TTTGTTCTATAGAAACTAGACTCAAAGAGGAAATTATACA
67594378 TTTGTTTCTATAGAAACTAGACTCAAAGAGGAAATTATACA
1 TTTG-TTCTATAGAAACTAGACTCAAAGAGGAAATTATACA
67594419 T
1 T
67594420 ATGTGGTATG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 4 0.10
41 37 0.90
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (40 bp):
TTTGTTCTATAGAAACTAGACTCAAAGAGGAAATTATACA
Found at i:67596778 original size:24 final size:24
Alignment explanation
Indices: 67596746--67596834 Score: 178
Period size: 24 Copynumber: 3.7 Consensus size: 24
67596736 ACCGAATGTG
67596746 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
67596770 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
67596794 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
67596818 GCACACATAGTGCCATA
1 GCACACATAGTGCCATA
67596835 TATCAGCACG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAATC
Found at i:67596848 original size:24 final size:23
Alignment explanation
Indices: 67596746--67596859 Score: 151
Period size: 24 Copynumber: 4.7 Consensus size: 23
67596736 ACCGAATGTG
67596746 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGT-AATC
67596770 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGT-AATC
67596794 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGT-AATC
67596818 GCACACATAGTGCCATA-T-ATC
1 GCACACATAGTGCCATAGTAATC
67596839 AGCACGCACACTAGTGCCATA
1 -GCA--CACA-TAGTGCCATA
67596860 TATTTCCAGC
Statistics
Matches: 86, Mismatches: 0, Indels: 7
0.92 0.00 0.08
Matches are distributed among these distances:
21 3 0.03
22 3 0.03
23 1 0.01
24 69 0.80
25 10 0.12
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (23 bp):
GCACACATAGTGCCATAGTAATC
Found at i:67596858 original size:25 final size:28
Alignment explanation
Indices: 67596817--67596886 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 28
67596807 CATAGTAAAT
67596817 CGCACACATAGTGCCATATA-T-CAGCA
1 CGCACACATAGTGCCATATATTCCAGCA
67596843 CGCACAC-TAGTGCCATATATTTCCAGCA
1 CGCACACATAGTGCCATATA-TTCCAGCA
*
67596871 CGCACACTTAGTGCCA
1 CGCACACATAGTGCCA
67596887 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.30
26 7 0.17
27 1 0.03
28 12 0.30
29 8 0.20
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (28 bp):
CGCACACATAGTGCCATATATTCCAGCA
Found at i:67596878 original size:28 final size:26
Alignment explanation
Indices: 67596746--67596886 Score: 101
Period size: 24 Copynumber: 5.6 Consensus size: 26
67596736 ACCGAATGTG
67596746 GCACACATAGTGCCATAGTA--A--ATC
1 GCACACATAGTGCCATA-TATCAGCA-C
67596770 GCACACATAGTGCCATAGTA--A--ATC
1 GCACACATAGTGCCATA-TATCAGCA-C
67596794 GCACACATAGTGCCATAGTA--A--ATC
1 GCACACATAGTGCCATA-TATCAGCA-C
67596818 GCACACATAGTGCCATATATCAGCAC
1 GCACACATAGTGCCATATATCAGCAC
67596844 GCACAC-TAGTGCCATATATTTCCAGCAC
1 GCACACATAGTGCCATATA--T-CAGCAC
*
67596872 GCACACTTAGTGCCA
1 GCACACATAGTGCCA
67596887 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 0, Indels: 11
0.91 0.00 0.09
Matches are distributed among these distances:
23 2 0.02
24 65 0.60
25 13 0.12
26 7 0.06
27 2 0.02
28 12 0.11
29 8 0.07
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (26 bp):
GCACACATAGTGCCATATATCAGCAC
Found at i:67604648 original size:24 final size:24
Alignment explanation
Indices: 67604621--67604711 Score: 182
Period size: 24 Copynumber: 3.8 Consensus size: 24
67604611 CTTATTATGT
67604621 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
67604645 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
67604669 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
67604693 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
67604712 TATTTCCAGC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 67 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:67604736 original size:29 final size:29
Alignment explanation
Indices: 67604694--67604767 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
67604684 CATAGTAAAT
*
67604694 CGCACACATAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67604723 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
67604752 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67604768 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:67606460 original size:29 final size:27
Alignment explanation
Indices: 67606427--67606529 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
67606417 TACTCAATCA
*
67606427 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
67606456 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
67606485 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
67606514 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67606530 ATCTCGTCCT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:67608569 original size:14 final size:14
Alignment explanation
Indices: 67608552--67608581 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67608542 TTTTATTTAG
*
67608552 TATTTTTATGTTTT
1 TATTTTTATCTTTT
67608566 TATTTTTATCTTTT
1 TATTTTTATCTTTT
67608580 TA
1 TA
67608582 AAACTACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TATTTTTATCTTTT
Found at i:67612566 original size:43 final size:43
Alignment explanation
Indices: 67612496--67612701 Score: 215
Period size: 43 Copynumber: 4.8 Consensus size: 43
67612486 ATAAGCTCGA
*
67612496 ACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCTCATAT
1 ACAATGCCAATATCCCAGACATGGTCTTACATG-TATCTCATAT
* * * * ** *
67612539 -CGACGCCACTATCCCAGACATGGTCTTACACG-AAATCAAAT
1 ACAATGCCAATATCCCAGACATGGTCTTACATGTATCTCATAT
* * *
67612580 AACAATGCCAATGTCCCAAACATGGTCTTACATGTATC-CACAAT
1 -ACAATGCCAATATCCCAGACATGGTCTTACATGTATCTCA-TAT
* *
67612624 ACAATGCCAATATCCCAGACATGATCTTACATGTATTTACA-AT
1 ACAATGCCAATATCCCAGACATGGTCTTACATGTATCT-CATAT
*
67612667 ACAATGCCAATATCCCAGACATGGTCTTTCATGTA
1 ACAATGCCAATATCCCAGACATGGTCTTACATGTA
67612702 ATCACATTTC
Statistics
Matches: 134, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
41 6 0.04
42 5 0.04
43 117 0.87
44 4 0.03
45 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (43 bp):
ACAATGCCAATATCCCAGACATGGTCTTACATGTATCTCATAT
Found at i:67612639 original size:86 final size:86
Alignment explanation
Indices: 67612495--67612708 Score: 247
Period size: 86 Copynumber: 2.5 Consensus size: 86
67612485 CATAAGCTCG
* * * *
67612495 AACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCTCATATCGACGCCACTATCCCAGACA
1 AACAATGCCAATATCCCAGACATGGTCTTACATG-TATCACATATCAACGCCAATATCCCAGACA
*
67612559 TGGTCTTACACGAAATCA-AAT
65 TGATCTTACACGAAATCACAAT
* * *
67612580 AACAATGCCAATGTCCCAAACATGGTCTTACATGTATCCACA-ATACAATGCCAATATCCCAGAC
1 AACAATGCCAATATCCCAGACATGGTCTTACATGTAT-CACATAT-CAACGCCAATATCCCAGAC
* * * *
67612644 ATGATCTTACATGTATTTACAAT
64 ATGATCTTACACGAAATCACAAT
*
67612667 -ACAATGCCAATATCCCAGACATGGTCTTTCATGTAATCACAT
1 AACAATGCCAATATCCCAGACATGGTCTTACATGT-ATCACAT
67612709 TTCGGTAACC
Statistics
Matches: 108, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
85 14 0.13
86 89 0.82
87 5 0.05
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.28
Consensus pattern (86 bp):
AACAATGCCAATATCCCAGACATGGTCTTACATGTATCACATATCAACGCCAATATCCCAGACAT
GATCTTACACGAAATCACAAT
Found at i:67616163 original size:9 final size:9
Alignment explanation
Indices: 67616149--67616177 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
67616139 TTATTGCCTA
67616149 TTATTATTT
1 TTATTATTT
67616158 TTATTATTT
1 TTATTATTT
67616167 TTATTATTT
1 TTATTATTT
67616176 TT
1 TT
67616178 TATTTATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTATTATTT
Found at i:67619331 original size:40 final size:40
Alignment explanation
Indices: 67619269--67619486 Score: 300
Period size: 40 Copynumber: 5.5 Consensus size: 40
67619259 AAGCCAAGTA
* * * *
67619269 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
67619308 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67619348 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67619388 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * * *
67619428 CCTTTGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
67619468 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67619487 TTATCATCCA
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 152 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67627478 original size:40 final size:40
Alignment explanation
Indices: 67627434--67627557 Score: 144
Period size: 40 Copynumber: 3.1 Consensus size: 40
67627424 CAGGATTTAA
* * * *
67627434 CCGGATATAGCT-ACTCGCTCGAATCCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
67627474 CCGGATATAGTAACTCGCACAAATGCCTTCGGGATTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
67627514 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67627554 CCGG
1 CCGG
67627558 TTATCATCCA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.03
40 71 0.97
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67630001 original size:40 final size:40
Alignment explanation
Indices: 67629951--67630127 Score: 189
Period size: 40 Copynumber: 4.4 Consensus size: 40
67629941 TCAATGTCTC
* * * *
67629951 GCACATTAAGTGCCATACATAGCT-GAAGCTATCTCAAATT
1 GCACACTAAGTGCCATATATAG-TAGAAGCTATGTCGAATT
* * *
67629991 GCACACTAAGTGGCATATATAATCGAAGCTATGTCGAATCT
1 GCACACTAAGTGCCATATATAGTAGAAGCTATGTCGAAT-T
*
67630032 -CACACTAAGTGCCATATATAGTAGAAGCTATGTCGTATT
1 GCACACTAAGTGCCATATATAGTAGAAGCTATGTCGAATT
* ** * *
67630071 GCACACTAAGTGCCATATACAACCA-AAGCTATGTCGTATC
1 GCACACTAAGTGCCATATA-TAGTAGAAGCTATGTCGAATT
67630111 GCACACTAAGTGCCATA
1 GCACACTAAGTGCCATA
67630128 AATAATTGAT
Statistics
Matches: 119, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.02
40 114 0.96
41 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGTAGAAGCTATGTCGAATT
Found at i:67630100 original size:80 final size:80
Alignment explanation
Indices: 67629949--67630127 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 80
67629939 ACTCAATGTC
* * * *
67629949 TCGCACATTAAGTGCCATACATAGCTGAAGCTATCTCAAATTGCACACTAAGTGGCATATATAAT
1 TCGCACACTAAGTGCCATACATAGCTGAAGCTATCTCAAATTGCACACTAAGTGCCATATACAAC
*
67630014 CGAAGCTATGTCGAA
66 CAAAGCTATGTCGAA
* * * **
67630029 TCTCACACTAAGTGCCATATATAG-TAGAAGCTATGTCGTATTGCACACTAAGTGCCATATACAA
1 TCGCACACTAAGTGCCATACATAGCT-GAAGCTATCTCAAATTGCACACTAAGTGCCATATACAA
*
67630093 CCAAAGCTATGTCGTA
65 CCAAAGCTATGTCGAA
67630109 TCGCACACTAAGTGCCATA
1 TCGCACACTAAGTGCCATA
67630128 AATAATTGAT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 1 0.01
80 85 0.99
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATACATAGCTGAAGCTATCTCAAATTGCACACTAAGTGCCATATACAAC
CAAAGCTATGTCGAA
Found at i:67651796 original size:19 final size:21
Alignment explanation
Indices: 67651766--67651809 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
67651756 GCATTGGAAC
67651766 TTTTATTTTTATTTAACTTA-
1 TTTTATTTTTATTTAACTTAG
*
67651786 TTTTA-TTTTATTTTACTTAG
1 TTTTATTTTTATTTAACTTAG
67651806 TTTT
1 TTTT
67651810 TTAATCACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTATTTTTATTTAACTTAG
Found at i:67673656 original size:29 final size:29
Alignment explanation
Indices: 67673622--67673753 Score: 113
Period size: 29 Copynumber: 4.6 Consensus size: 29
67673612 TACTCGATTT
*
67673622 CGCACACTTAGTGCCATGCGACTT-AAGCC
1 CGCACACTTAGTGCCATAC-ACTTCAAGCC
* * * *
67673651 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACACTTCAAGCC
* * * *
67673680 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCAAGCC
* * * * *
67673709 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCAAGCC
*
67673738 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67673754 ATCTCATCAC
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
28 3 0.03
29 87 0.97
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACACTTCAAGCC
Found at i:67677012 original size:37 final size:37
Alignment explanation
Indices: 67676959--67677079 Score: 206
Period size: 37 Copynumber: 3.3 Consensus size: 37
67676949 TTATTACGAA
* *
67676959 GTCTTACCCGGACATAATCTCCATACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
67676996 GTCTTACCTGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
67677033 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
67677070 GTCTCACCCG
1 GTCTTACCCG
67677080 AAACATTTCC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:67677187 original size:49 final size:49
Alignment explanation
Indices: 67677134--67677397 Score: 345
Period size: 49 Copynumber: 5.2 Consensus size: 49
67677124 TTCACATTAG
67677134 CACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
1 CACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
*
67677183 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
1 CACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
67677232 CACATATACATACACTTTCACGCACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
1 CACATAT--AT--A---T-A--CACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
* *
67677291 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
* * *
67677340 CAC--ATATATACACTTTGACATTCATCACATTGGCCA-TACGGCCTTAT
1 CACATATATATACACTTTCACATTCACCACATCGGCCATTA-GGCCTTAT
*
67677387 CACACATATAT
1 CACATATATAT
67677398 GTATATCATA
Statistics
Matches: 195, Mismatches: 7, Indels: 26
0.86 0.03 0.11
Matches are distributed among these distances:
46 2 0.01
47 41 0.21
49 100 0.51
51 2 0.01
52 1 0.01
53 1 0.01
55 1 0.01
56 1 0.01
57 2 0.01
59 44 0.23
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.30
Consensus pattern (49 bp):
CACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
Found at i:67677235 original size:31 final size:31
Alignment explanation
Indices: 67677200--67677295 Score: 87
Period size: 31 Copynumber: 3.2 Consensus size: 31
67677190 ACATACACTT
67677200 TCACATTCACCACATCGGCCATTAGGCCTTA
1 TCACATTCACCACATCGGCCATTAGGCCTTA
* * * *
67677231 TCACA-T-A-TACATAC--ACTTTCACGCACTT-
1 TCACATTCACCACAT-CGGCCATT-AGGC-CTTA
67677259 TCACATTCACCACATCGGCCATTAGGCCTTA
1 TCACATTCACCACATCGGCCATTAGGCCTTA
67677290 TCACAT
1 TCACAT
67677296 ATACATACAC
Statistics
Matches: 48, Mismatches: 8, Indels: 18
0.65 0.11 0.24
Matches are distributed among these distances:
27 3 0.06
28 12 0.25
29 6 0.12
30 6 0.12
31 18 0.38
32 3 0.06
ACGTcount: A:0.28, C:0.34, G:0.09, T:0.28
Consensus pattern (31 bp):
TCACATTCACCACATCGGCCATTAGGCCTTA
Found at i:67677265 original size:108 final size:106
Alignment explanation
Indices: 67677146--67677355 Score: 393
Period size: 108 Copynumber: 2.0 Consensus size: 106
67677136 CATATATATA
67677146 CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
1 CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
67677211 ACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACG
66 ACATCGGCCATTAGGCCTTATCACATAT--ATACACTTTCACG
*
67677254 CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATC
1 CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
67677319 ACATCGGCCATTAGGCCTTATCACATATATACACTTT
66 ACATCGGCCATTAGGCCTTATCACATATATACACTTT
67677356 GACATTCATC
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
106 9 0.09
108 92 0.91
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (106 bp):
CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACG
Found at i:67677369 original size:47 final size:47
Alignment explanation
Indices: 67677254--67677396 Score: 216
Period size: 47 Copynumber: 3.0 Consensus size: 47
67677244 CACTTTCACG
*
67677254 CACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT--ATA
67677303 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* * *
67677350 CACTTTGACATTCATCACATTGGCCA-TACGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTA-GGCCTTATCACATATATA
67677397 TGTATATCAT
Statistics
Matches: 89, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.02
47 44 0.49
49 43 0.48
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:67684711 original size:29 final size:29
Alignment explanation
Indices: 67684677--67684808 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
67684667 TACTCGATTT
* * *
67684677 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
67684706 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
67684735 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
67684764 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
67684793 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67684809 ATCTCATCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:67684769 original size:58 final size:59
Alignment explanation
Indices: 67684676--67684808 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
67684666 ATACTCGATT
* * * *
67684676 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
67684734 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
67684793 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
67684809 ATCTCATCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:67687975 original size:46 final size:46
Alignment explanation
Indices: 67687918--67688089 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
67687908 TTGGGCATCT
67687918 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * * * *
67687964 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* *
67688011 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CC
1 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
67688056 TGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATG
1 -GAACTCATTGAGTTGAGTCCGAGTTCACTTATG
67688090 CGCGAGTTAC
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 55 0.53
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:67688070 original size:93 final size:93
Alignment explanation
Indices: 67687911--67688083 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
67687901 CAGATATTTG
* * *
67687911 GGCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
67687976 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
67688004 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGA
67688068 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
67688084 CTTATGCGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:67691170 original size:35 final size:35
Alignment explanation
Indices: 67691124--67691194 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
67691114 ACTCTTTGAG
67691124 TGTAGCGTTCAACCCCGATACCTTTAGTTCCTATC
1 TGTAGCGTTCAACCCCGATACCTTTAGTTCCTATC
*
67691159 TGTAGCGTTCAACCCCGATACCTTTAGTTCGTATC
1 TGTAGCGTTCAACCCCGATACCTTTAGTTCCTATC
67691194 T
1 T
67691195 CCTCATAGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (35 bp):
TGTAGCGTTCAACCCCGATACCTTTAGTTCCTATC
Found at i:67694094 original size:53 final size:53
Alignment explanation
Indices: 67694014--67694219 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
67694004 TTCCTTTTTA
* * *
67694014 AACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC-TGGTATCCTTGCCTTATAG
* * * * * *
67694067 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC-TGGTATCCTTGCCTTATAG
** * * *** * * *
67694121 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACAAATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACTGGTATCCTTGCCTTATAG
* *
67694175 AATTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC-TGGTATCCTT
67694220 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 75 0.63
54 17 0.14
55 27 0.23
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACTGGTATCCTTGCCTTATAG
Found at i:67695733 original size:27 final size:27
Alignment explanation
Indices: 67695695--67695749 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
67695685 TAACATAGAC
67695695 ACATGGAACACATCATGAATCTTCTCT
1 ACATGGAACACATCATGAATCTTCTCT
67695722 ACATGGAACACATCATGAATCTTCTCT
1 ACATGGAACACATCATGAATCTTCTCT
67695749 A
1 A
67695750 ACTCTGGCGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.29
Consensus pattern (27 bp):
ACATGGAACACATCATGAATCTTCTCT
Found at i:67699775 original size:40 final size:40
Alignment explanation
Indices: 67699731--67699910 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
67699721 GCTCGATTGT
* * *
67699731 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
67699771 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
67699811 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
67699851 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
67699892 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACATAGCCCGGA
67699911 CACCATTCGA
Statistics
Matches: 117, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 87 0.74
41 26 0.22
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:67699829 original size:80 final size:81
Alignment explanation
Indices: 67699731--67699909 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 81
67699721 GCTCGATTGT
* * * *
67699731 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
67699795 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * *
67699811 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
67699876 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
67699892 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
67699910 ACACCATTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 58 0.67
81 28 0.33
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:67707842 original size:40 final size:40
Alignment explanation
Indices: 67707798--67707977 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
67707788 GCTCGATTGT
* * *
67707798 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
67707838 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
67707878 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
67707918 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
67707959 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACATAGCCCGGA
67707978 CATCATTCGA
Statistics
Matches: 117, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 87 0.74
41 26 0.22
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:67707896 original size:80 final size:81
Alignment explanation
Indices: 67707798--67707976 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 81
67707788 GCTCGATTGT
* * * *
67707798 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
67707862 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * *
67707878 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
67707943 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
67707959 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
67707977 ACATCATTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 58 0.67
81 28 0.33
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:67712463 original size:53 final size:53
Alignment explanation
Indices: 67712394--67712600 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 53
67712384 TTCCTTTTTA
* * **
67712394 AACTTACCATTTCCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * *
67712447 AACTTAACATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * * * * * *
67712501 TAGTTTATCAAAGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTGTA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * *
67712555 AACCTTACCAATGCCACGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AA-CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
67712601 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 46 0.39
54 34 0.29
55 39 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:67712537 original size:55 final size:53
Alignment explanation
Indices: 67712406--67712600 Score: 156
Period size: 55 Copynumber: 3.6 Consensus size: 53
67712396 CTTACCATTT
* * **
67712406 CCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTTAACATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTTAACAAAG
* * * ** *
67712459 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAAAG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTTAACAAAG
* *** * * * *
67712514 CCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTGTAAACCTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA-CTTAACAAAG
* * * * *
67712568 CCACGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
67712601 AAACCCTAAT
Statistics
Matches: 109, Mismatches: 30, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 36 0.33
54 34 0.31
55 39 0.36
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTTAACAAAG
Found at i:67714049 original size:12 final size:12
Alignment explanation
Indices: 67714032--67714066 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
67714022 ACACACGGTT
*
67714032 GTGTGCCAGGCC
1 GTGTGCTAGGCC
67714044 GTGTGCTAGGCC
1 GTGTGCTAGGCC
*
67714056 ATGTGCTAGGC
1 GTGTGCTAGGC
67714067 AGTGCCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.11, C:0.26, G:0.40, T:0.23
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:67715301 original size:27 final size:27
Alignment explanation
Indices: 67715260--67715351 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
67715250 TGGATAAGTT
**
67715260 GTAGAATTATTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
67715287 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
67715314 GTAGAAATACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
67715341 GTAAAATTACC
1 GTAGAATTACC
67715352 ATTTTGCCCC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:67716038 original size:27 final size:26
Alignment explanation
Indices: 67715994--67716044 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
67715984 CTCACTGCAA
*
67715994 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
67716021 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
67716045 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:67716125 original size:27 final size:27
Alignment explanation
Indices: 67716094--67716145 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
67716084 ATAAATATGT
*
67716094 TCTGGTGGCTTAGACACAATATCTGTA
1 TCTGGTGACTTAGACACAATATCTGTA
* *
67716121 TCTGGTGACTTTGTCACAATATCTG
1 TCTGGTGACTTAGACACAATATCTG
67716146 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (27 bp):
TCTGGTGACTTAGACACAATATCTGTA
Found at i:67716302 original size:15 final size:15
Alignment explanation
Indices: 67716282--67716314 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67716272 ATTTGCTCTA
67716282 TATCTACTATGGGCC
1 TATCTACTATGGGCC
67716297 TATCTACTATGGGCC
1 TATCTACTATGGGCC
67716312 TAT
1 TAT
67716315 GGGTTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (15 bp):
TATCTACTATGGGCC
Found at i:67718021 original size:30 final size:30
Alignment explanation
Indices: 67717985--67718085 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
67717975 GACAAGATTG
* * *
67717985 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67718015 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67718043 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
67718072 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67718086 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:67718097 original size:29 final size:28
Alignment explanation
Indices: 67718014--67718089 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
67718004 AAAATTGTAC
* *
67718014 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
67718042 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
67718071 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
67718090 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:67725879 original size:30 final size:30
Alignment explanation
Indices: 67725843--67725943 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
67725833 GACAAGATTG
* * *
67725843 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67725873 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67725901 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
67725930 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67725944 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:67725955 original size:29 final size:28
Alignment explanation
Indices: 67725872--67725947 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
67725862 AAAATTGTAC
* *
67725872 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
67725900 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
67725929 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
67725948 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:67732756 original size:27 final size:28
Alignment explanation
Indices: 67732717--67732799 Score: 107
Period size: 27 Copynumber: 3.0 Consensus size: 28
67732707 GATAAGTTGT
**
67732717 AGAATTATTGAAATACCCTTGTAGGG-A
1 AGAATTACCGAAATACCCTTGTAGGGTA
*
67732744 AGAATTACCGAAATACCCCTGTAGGGTA
1 AGAATTACCGAAATACCCTTGTAGGGTA
* *
67732772 A-AATTACCGAGATACCCTTGTGGGGTA
1 AGAATTACCGAAATACCCTTGTAGGGTA
67732799 A
1 A
67732800 AACTACCATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 47 0.96
28 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (28 bp):
AGAATTACCGAAATACCCTTGTAGGGTA
Found at i:67732800 original size:27 final size:27
Alignment explanation
Indices: 67732726--67732806 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
67732716 TAGAATTATT
67732726 GAAATACCCTTGTAGGG-AAGAATTACC
1 GAAATACCCTTGTAGGGTAA-AATTACC
*
67732753 GAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAAAATTACC
* * *
67732780 GAGATACCCTTGTGGGGTAAAACTACC
1 GAAATACCCTTGTAGGGTAAAATTACC
67732807 ATTTTGCCCC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 46 0.96
28 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAAAATTACC
Found at i:67737087 original size:16 final size:16
Alignment explanation
Indices: 67737057--67737091 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
67737047 GTAAAAGCCA
*
67737057 AAATGTCGAAAAGCTG
1 AAATATCGAAAAGCTG
67737073 AAATATCGAAAAGCTG
1 AAATATCGAAAAGCTG
67737089 AAA
1 AAA
67737092 GTTTGACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.17
Consensus pattern (16 bp):
AAATATCGAAAAGCTG
Found at i:67737348 original size:29 final size:29
Alignment explanation
Indices: 67737304--67737391 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
67737294 TGAGCATGAC
* * * *
67737304 TATAAATTTGAATTGGGCCTGATGTGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
*
67737333 TATAAATGTGATTTGGGCCTAAAGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
*
67737362 TATAAATGTGATTTTGGCCTAATGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCCA
67737391 T
1 T
67737392 GTGAATATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (29 bp):
TATAAATGTGATTTGGGCCTAATGGGCCA
Found at i:67740152 original size:27 final size:27
Alignment explanation
Indices: 67739581--67740144 Score: 697
Period size: 27 Copynumber: 20.9 Consensus size: 27
67739571 AAAGTACTCC
*
67739581 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
67739608 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67739635 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67739662 CAATTTACAGAATTACCGTTTTGCCCT
1 CGATTTACAGAATTACCGTTTTACCCT
67739689 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * ** *
67739716 CAATTTACAAAATTACTATTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67739743 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
67739770 CAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67739797 CGATTCATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
67739824 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
67739851 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
67739878 CAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
67739905 TGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
67739932 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
67739959 CCATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
67739986 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
67740013 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
67740040 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
67740067 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
67740094 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
67740121 CGATTTACAGAATTACCGTTTTAC
1 CGATTTACAGAATTACCGTTTTAC
67740145 TCTTGATTGT
Statistics
Matches: 464, Mismatches: 63, Indels: 20
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.01
27 454 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:67740195 original size:27 final size:27
Alignment explanation
Indices: 67740157--67740352 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
67740147 TTGATTGTGA
*
67740157 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67740184 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
67740211 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
67740238 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67740265 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
67740292 AAATACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** * *
67740319 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
67740346 AATTACC
1 AATTACC
67740353 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:67740589 original size:27 final size:26
Alignment explanation
Indices: 67740551--67740633 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
67740541 CGGAGGAAGC
*
67740551 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
67740578 GTTCTGGTGGCTCTGCCACAATATAT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
67740604 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
67740631 GTT
1 GTT
67740634 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.82
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:67740753 original size:22 final size:22
Alignment explanation
Indices: 67740721--67740779 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
67740711 CCCGTTATTA
*
67740721 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
67740743 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
67740765 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
67740780 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:67740957 original size:25 final size:26
Alignment explanation
Indices: 67740929--67741014 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 26
67740919 TGCCACGTAT
*
67740929 TCTGTT-AGGTGGGTT-TGCCACATTA
1 TCTGTTCAGGT-GGTTCTGCCACAATA
*
67740954 TCTGATTCTGGTGGTTCTGCCACAATA
1 TCTG-TTCAGGTGGTTCTGCCACAATA
* ** * *
67740981 TCTGTATCTGGTGACTCTGTCACGATA
1 TCTGT-TCAGGTGGTTCTGCCACAATA
67741008 TCTGTTC
1 TCTGTTC
67741015 TGGCAGCCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
25 4 0.08
26 9 0.18
27 38 0.75
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (26 bp):
TCTGTTCAGGTGGTTCTGCCACAATA
Found at i:67740966 original size:27 final size:28
Alignment explanation
Indices: 67740936--67740993 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
67740926 TATTCTGTTA
*
67740936 GGTGGGTT-TGCCACATTATCTG-ATTCT
1 GGTGGGTTCTGCCACAATATCTGTA-TCT
67740963 GGT-GGTTCTGCCACAATATCTGTATCT
1 GGTGGGTTCTGCCACAATATCTGTATCT
67740990 GGTG
1 GGTG
67740994 ACTCTGTCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.16, C:0.19, G:0.28, T:0.38
Consensus pattern (28 bp):
GGTGGGTTCTGCCACAATATCTGTATCT
Found at i:67740999 original size:27 final size:27
Alignment explanation
Indices: 67740944--67741017 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
67740934 TAGGTGGGTT
* **
67740944 TGCCACATTATCTG-ATTCTGGTGGTTC
1 TGCCACAATATCTGTA-TCTGGTGACTC
67740971 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
* *
67740998 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
67741018 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:67741169 original size:6 final size:6
Alignment explanation
Indices: 67741160--67741236 Score: 97
Period size: 6 Copynumber: 12.8 Consensus size: 6
67741150 CTGTCACTTA
*
67741160 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
67741208 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
67741237 CATTTTGGTT
Statistics
Matches: 63, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
5 5 0.08
6 54 0.86
7 3 0.05
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:67741257 original size:30 final size:30
Alignment explanation
Indices: 67741135--67741236 Score: 152
Period size: 30 Copynumber: 3.4 Consensus size: 30
67741125 TTGCATTCAC
* *
67741135 ATTCTGATTCTAATTCTGTCACTTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
67741166 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
67741196 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
67741226 ATTCTGATTCT
1 ATTCTGATTCT
67741237 CATTTTGGTT
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.02
30 44 0.67
31 21 0.32
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:67746252 original size:41 final size:43
Alignment explanation
Indices: 67746160--67746256 Score: 110
Period size: 41 Copynumber: 2.3 Consensus size: 43
67746150 AGCATCTTAG
* * *
67746160 ACATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAT
1 ACATGGTCTTACATGTAATCAAATATCAATGCCACTGTCCCAA
* * *
67746203 ACAGGGTCTTACATG-AATCAAATA-CAATGTCGA-TGTCCTAA
1 ACATGGTCTTACATGTAATCAAATATCAATG-CCACTGTCCCAA
67746244 ACATGGTCTTACA
1 ACATGGTCTTACA
67746257 CGAACCAGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 22 0.48
42 10 0.22
43 14 0.30
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
ACATGGTCTTACATGTAATCAAATATCAATGCCACTGTCCCAA
Found at i:67749916 original size:29 final size:29
Alignment explanation
Indices: 67749883--67749942 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
67749873 ATAACCAAAC
* *
67749883 CTACAAAAACTTTATATCCATAAATCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
67749912 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
67749941 CT
1 CT
67749943 TTGAATCCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:67749935 original size:15 final size:15
Alignment explanation
Indices: 67749889--67749936 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
67749879 AAACCTACAA
*
67749889 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
67749904 AAA-TCCATCTACAT
1 AAACTTCATATCCAT
67749918 AAACTTCATATCCAT
1 AAACTTCATATCCAT
67749933 AAAC
1 AAAC
67749937 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:67750171 original size:10 final size:11
Alignment explanation
Indices: 67750155--67750187 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
67750145 TCAAGTAAGT
67750155 TTCAAAAAAAA
1 TTCAAAAAAAA
67750166 -TCAAAAAAAAA
1 TTC-AAAAAAAA
67750177 TTCAAAAAAAA
1 TTCAAAAAAAA
67750188 ATTTGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.10
11 16 0.80
12 2 0.10
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (11 bp):
TTCAAAAAAAA
Found at i:67750175 original size:12 final size:12
Alignment explanation
Indices: 67750158--67750206 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
67750148 AGTAAGTTTC
67750158 AAAAAAAATCAA
1 AAAAAAAATCAA
*
67750170 AAAAAAATTCAA
1 AAAAAAAATCAA
* **
67750182 AAAAAAATTTGA
1 AAAAAAAATCAA
67750194 AAAAAAAA-CAA
1 AAAAAAAATCAA
67750205 AA
1 AA
67750207 TCTGAAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
11 3 0.10
12 28 0.90
ACGTcount: A:0.80, C:0.06, G:0.02, T:0.12
Consensus pattern (12 bp):
AAAAAAAATCAA
Found at i:67750196 original size:13 final size:12
Alignment explanation
Indices: 67750158--67750201 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
67750148 AGTAAGTTTC
67750158 AAAAAAAA-TCA
1 AAAAAAAATTCA
67750169 AAAAAAAATTCA
1 AAAAAAAATTCA
*
67750181 AAAAAAAATTTGA
1 AAAAAAAA-TTCA
67750194 AAAAAAAA
1 AAAAAAAA
67750202 CAAAATCTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 8 0.27
12 11 0.37
13 11 0.37
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:67750201 original size:18 final size:18
Alignment explanation
Indices: 67750180--67750214 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67750170 AAAAAAATTC
*
67750180 AAAAAAAAATTTGAAAAA
1 AAAAAAAAATCTGAAAAA
*
67750198 AAAACAAAATCTGAAAA
1 AAAAAAAAATCTGAAAA
67750215 TTTGAACATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAAAAAAATCTGAAAAA
Found at i:67754555 original size:29 final size:29
Alignment explanation
Indices: 67754522--67754581 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
67754512 ATAACCAAAC
* *
67754522 CTACAAAAACTTTATATCCATAAATCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
67754551 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
67754580 CT
1 CT
67754582 TTGAATCCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:67754574 original size:15 final size:15
Alignment explanation
Indices: 67754528--67754575 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
67754518 AAACCTACAA
*
67754528 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
67754543 AAA-TCCATCTACAT
1 AAACTTCATATCCAT
67754557 AAACTTCATATCCAT
1 AAACTTCATATCCAT
67754572 AAAC
1 AAAC
67754576 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:67758626 original size:28 final size:28
Alignment explanation
Indices: 67758569--67758629 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
67758559 TGGGAAGTAG
***
67758569 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACAAGA
* *
67758597 TTGGGCTTGATGGGCCATGTGAACAAGA
1 TTGGGCCTGATGGGCCATATGAACAAGA
67758625 TTGGG
1 TTGGG
67758630 GCTAAAAGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.13, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACAAGA
Found at i:67758978 original size:27 final size:27
Alignment explanation
Indices: 67758948--67759288 Score: 367
Period size: 27 Copynumber: 12.7 Consensus size: 27
67758938 ATAATAAAGA
* *
67758948 AAAATTACTAAAATACCCTTGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
*
67758975 AAAATTACCGAAATACCC-CTGATTTGT
1 AAAATTACTGAAATACCCTC-GATTTGT
*
67759002 AAAA-TACCGAAATACCCTCGA-TTGT
1 AAAATTACTGAAATACCCTCGATTTGT
*
67759027 GAAAA-TACTAAAATACCCTCGATTTGT
1 -AAAATTACTGAAATACCCTCGATTTGT
* ** * *
67759054 AGAATTACCAAAATACCCCCGATTTAT
1 AAAATTACTGAAATACCCTCGATTTGT
* * *
67759081 GAAATTA-TCGAAACACCCTCGATTTTT
1 AAAATTACT-GAAATACCCTCGATTTGT
*
67759108 AAAATTACTGAAACACCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* *
67759135 AAGATTACTGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
67759162 AAAATTA-TCGAAATACCCTCGATTTGT
1 AAAATTACT-GAAATACCCTCGATTTGT
*
67759189 AAAATTACCGAAATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
*
67759216 AAAATTA-TCGAAACA-CCTCTGATTTGT
1 AAAATTACT-GAAATACCCTC-GATTTGT
* * *
67759243 AAAATTATTGAAATACCCTTG-TAGTGT
1 AAAATTACTGAAATACCCTCGAT-TTGT
67759270 AAAATTACTGAAATACCCT
1 AAAATTACTGAAATACCCT
67759289 TGTAGTGTAA
Statistics
Matches: 270, Mismatches: 30, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.01
26 43 0.16
27 218 0.81
28 5 0.02
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGATTTGT
Found at i:67759301 original size:81 final size:81
Alignment explanation
Indices: 67758948--67759288 Score: 422
Period size: 81 Copynumber: 4.2 Consensus size: 81
67758938 ATAATAAAGA
* * *
67758948 AAAATTACTAAAATACCCTTGATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAA-TACCGA
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATCGA
67759012 AATACCCTCGA-TTGT
66 AATACCCTCGATTTGT
* * * * * *
67759027 GAAAA-TACTAAAATACCCTCGATTTGTAGAATTACCAAAATACCCCCGATTTATGAAATTATCG
1 -AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATCG
* *
67759091 AAACACCCTCGATTTTT
65 AAATACCCTCGATTTGT
* * * *
67759108 AAAATTACTGAAACACCCTCGATTTGTAAGATTACTGAAATA-CCCTCAATTTGTAAAATTATCG
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCT-GATTTGTAAAATTATCG
67759172 AAATACCCTCGATTTGT
65 AAATACCCTCGATTTGT
* * * * *
67759189 AAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAACACCTCTGATTTGTAAAATTATTGA
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATCGA
* *
67759254 AATACCCTTG-TAGTGT
66 AATACCCTCGAT-TTGT
67759270 AAAATTACTGAAATACCCT
1 AAAATTACTGAAATACCCT
67759289 TGTAGTGTAA
Statistics
Matches: 222, Mismatches: 33, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
79 47 0.21
80 27 0.12
81 145 0.65
82 3 0.01
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTATCGA
AATACCCTCGATTTGT
Found at i:67759312 original size:27 final size:27
Alignment explanation
Indices: 67759253--67759332 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
67759243 AAAATTATTG
* *
67759253 AAATACCCTTGTAGTGTAAAATTACTG
1 AAATACCCTTGTAGTGTAAAATGACTC
67759280 AAATACCCTTGTAGTGTAAAATGACTC
1 AAATACCCTTGTAGTGTAAAATGACTC
* * *
67759307 ACATACCCCTATAAG-GTAAAATGACT
1 AAATACCCTTGT-AGTGTAAAATGACT
67759333 ATTTTGCCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 45 0.96
28 2 0.04
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACTC
Found at i:67761187 original size:55 final size:54
Alignment explanation
Indices: 67761079--67761333 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 54
67761069 ATTAGGGTTT
* * *
67761079 AAGGATACCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * * * *
67761134 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTTTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * *
67761189 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * *
67761242 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * *
67761291 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
67761334 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
52 6 0.04
53 44 0.26
54 8 0.05
55 69 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:67761285 original size:108 final size:110
Alignment explanation
Indices: 67761086--67761286 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
67761076 TTTAAGGATA
*
67761086 CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
67761151 CCATGTCAAGACATGGCATTGATAAGTTACTTTAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTTTAAGGCAAAGGTC
* * *
67761196 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
67761258 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
67761287 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATCGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTTTAAGGCAAAGGTC
Found at i:67761432 original size:23 final size:24
Alignment explanation
Indices: 67761402--67761446 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
67761392 AAGGTAAGGC
*
67761402 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
67761425 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
67761447 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:67768444 original size:54 final size:53
Alignment explanation
Indices: 67768324--67768575 Score: 245
Period size: 54 Copynumber: 4.8 Consensus size: 53
67768314 ATTAGGGTTT
* *
67768324 AAGGATACCATGTAAGACCATGCCAAGGCAT-GCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * *
67768378 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAA-GC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
67768432 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
67768485 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
67768534 AAGGATACCACGTAAGACCATGACAAGTCATGG-AATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
67768576 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 20, Indels: 22
0.80 0.09 0.10
Matches are distributed among these distances:
48 9 0.05
49 30 0.18
51 1 0.01
52 12 0.07
53 40 0.24
54 69 0.41
55 9 0.05
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:67768518 original size:107 final size:108
Alignment explanation
Indices: 67768331--67768529 Score: 314
Period size: 107 Copynumber: 1.9 Consensus size: 108
67768321 TTTAAGGATA
*
67768331 CCATGTAAGACCATGCCAAGGCATGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CCATGTAAGACCATGCCAAGGCATGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
*
67768396 CATGTCAAGACATGGCATTGATAAGTTACTATAAGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGCAAAGGTC
* *
67768439 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCAT-GCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
67768501 ACCATGTCAAGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
67768530 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
106 3 0.04
107 48 0.57
108 31 0.37
109 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (108 bp):
CCATGTAAGACCATGCCAAGGCATGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGCAAAGGTC
Found at i:67773006 original size:24 final size:24
Alignment explanation
Indices: 67772974--67773039 Score: 123
Period size: 24 Copynumber: 2.8 Consensus size: 24
67772964 GATTCAATTT
67772974 CTACTATCCAAGACAGTTTGATTG
1 CTACTATCCAAGACAGTTTGATTG
67772998 CTACTATCCAAGACAGTTTGATTG
1 CTACTATCCAAGACAGTTTGATTG
*
67773022 CTACTATCCATGACAGTT
1 CTACTATCCAAGACAGTT
67773040 GGTTATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (24 bp):
CTACTATCCAAGACAGTTTGATTG
Found at i:67774365 original size:30 final size:30
Alignment explanation
Indices: 67774331--67774388 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
67774321 TCCTTAACTC
67774331 AAACTTTTGCAAAATTACAATTTTGCCCTT
1 AAACTTTTGCAAAATTACAATTTTGCCCTT
* * *
67774361 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGCAAAATTACAATTTTGCCC
67774389 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCTT
Found at i:67777547 original size:2 final size:2
Alignment explanation
Indices: 67777540--67777573 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
67777530 AGTATAGTTG
* *
67777540 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67777574 TCGGCCATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:67778246 original size:29 final size:29
Alignment explanation
Indices: 67778211--67778284 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
67778201 GTTGTGAGAT
* *
67778211 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67778240 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67778269 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67778285 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67780148 original size:40 final size:40
Alignment explanation
Indices: 67780093--67780310 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
67780083 TGGATGATAA
* * * *
67780093 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
* * *
67780133 CCGGGCTCAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
67780173 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
67780213 CCGGGCTAAGTCTCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
67780253 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
67780293 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67780311 TACTTGGCTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 145 0.90
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:67787338 original size:40 final size:40
Alignment explanation
Indices: 67787283--67787485 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
67787273 TGGATGATAA
* * * *
67787283 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
67787323 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
67787363 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
67787403 CTGGGCTAAGTGCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
67787443 CCGGGCTATGTCCTGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
67787483 CCG
1 CCG
67787486 ATTAAATCCC
Statistics
Matches: 150, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 147 0.98
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:67793007 original size:31 final size:30
Alignment explanation
Indices: 67792895--67793007 Score: 117
Period size: 30 Copynumber: 3.8 Consensus size: 30
67792885 TTTAGTCTTG
*
67792895 ACATAT-ACTGGGCCGAAGCC-TTTCATTTA
1 ACATATCACTGGGCCGAAGCCTTTTCA-TAA
* *
67792924 ACGGT-T-ACTGGGCTGAAGCCTTTTCATAA
1 AC-ATATCACTGGGCCGAAGCCTTTTCATAA
*
67792953 ACATATCACTGGGCCGAATCCTTTTCATAA
1 ACATATCACTGGGCCGAAGCCTTTTCATAA
* *
67792983 ATCATATCATTGGGTCGAAGCCTTT
1 A-CATATCACTGGGCCGAAGCCTTT
67793008 ACTGTAAATG
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
28 1 0.01
29 21 0.30
30 28 0.40
31 20 0.29
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (30 bp):
ACATATCACTGGGCCGAAGCCTTTTCATAA
Found at i:67793307 original size:26 final size:26
Alignment explanation
Indices: 67793278--67793389 Score: 179
Period size: 26 Copynumber: 4.3 Consensus size: 26
67793268 TTTCAATTAT
67793278 GCCCTTTTCAATAAACTGGGGCATAA
1 GCCCTTTTCAATAAACTGGGGCATAA
**
67793304 GCCCTTTTCGGTAAACTGGGGCATAA
1 GCCCTTTTCAATAAACTGGGGCATAA
*
67793330 GCCCTTTTCGATAAACTGGGGCATAA
1 GCCCTTTTCAATAAACTGGGGCATAA
* *
67793356 GCCTTTTTCAATAAACTAGGGCATAA
1 GCCCTTTTCAATAAACTGGGGCATAA
67793382 GCCCTTTT
1 GCCCTTTT
67793390 GCACTTCCTA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCCCTTTTCAATAAACTGGGGCATAA
Found at i:67794223 original size:27 final size:27
Alignment explanation
Indices: 67794188--67794271 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
67794178 GGGCATATTC
* *
67794188 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
67794215 GTCACTTTACCCTACAGGGGCTTTGCG
1 GTCACTTTACCCTACAGGGGCTTTACG
* *
67794242 GTCTCTTTACCCTACAGGAGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
67794269 GTC
1 GTC
67794272 TTTTTACCTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:67794363 original size:27 final size:27
Alignment explanation
Indices: 67794318--67794668 Score: 255
Period size: 27 Copynumber: 13.0 Consensus size: 27
67794308 TACAAGCGTG
* * *
67794318 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** ** * *
67794345 TTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
67794372 TTTCT-ATAATTTTTAGAAAGTCAAGGGTA
1 TTT-TGGTAA-TTTTACAAA-TCAAGGGTA
* ** *
67794401 TTTCT-ATAATTTTGTAAATCAGGGGTA
1 TTT-TGGTAATTTTACAAATCAAGGGTA
**
67794428 TTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
67794455 TTTCGGTAATTTCACAAA-CTAGTGGTA
1 TTTTGGTAATTTTACAAATCAAG-GGTA
67794482 TTTTGGTAATTTTACAAA-CAAGGGATA
1 TTTTGGTAATTTTACAAATCAAGGG-TA
**
67794509 TTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
67794536 TTTCGGTAATTTTACAAACCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * *
67794563 TTTTAGCAATTTTACAGA-CTAGGGT-
1 TTTTGGTAATTTTACAAATCAAGGGTA
** * *
67794588 TTTTGGTAATTTTACTGATCCATGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** *
67794615 TTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
67794642 TTTTAGTAATTTTGCAAATCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
67794669 AAACAGTAAT
Statistics
Matches: 257, Mismatches: 58, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
25 15 0.06
26 15 0.06
27 193 0.75
28 18 0.07
29 16 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATCAAGGGTA
Found at i:67794514 original size:81 final size:80
Alignment explanation
Indices: 67794423--67794668 Score: 287
Period size: 81 Copynumber: 3.1 Consensus size: 80
67794413 TGTAAATCAG
* * *
67794423 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTAG
*
67794488 TAATTTTACAAACAA
66 CAATTTTACAAACAA
*
67794503 GGGATATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTA
1 GGG-TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTA
* *
67794568 GCAATTTTACAGACTA
65 GCAATTTTACAAACAA
** ** * * *** *
67794584 GGGT-TTTTGGTAATTTTACTGATCCATGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTAG
* * *
67794648 TAATTTTGCAAATCGA
66 CAATTTTACAAA-CAA
67794664 GGGTA
1 GGGTA
67794669 AAACAGTAAT
Statistics
Matches: 143, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 60 0.42
80 10 0.07
81 73 0.51
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTAG
CAATTTTACAAACAA
Found at i:67794676 original size:27 final size:27
Alignment explanation
Indices: 67794646--67794776 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
67794636 AGGGTATTTT
*
67794646 AGTAATTTTGCAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
67794673 AGTAATTTTGTAAATCAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
*
67794700 AGTAATTCTT-TAAATCGAGGGTAAAAT
1 AGTAATT-TTGTAAATCGAGGGTAAAAC
* * *
67794727 GGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * *
67794754 GGTAACTCTGTAAATCGAGGGTA
1 AGTAATTTTGTAAATCGAGGGTA
67794777 CTTTAGTAAT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 89 0.97
28 2 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:67794678 original size:54 final size:54
Alignment explanation
Indices: 67794620--67794776 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 54
67794610 TGGTATTTTG
* ***
67794620 GTAATTTTGTAAACCAAGGGTATTTTAGTAATT-TTGCAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTT-CAAATCGAGGGTAAAACA
* **
67794674 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTTTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTTCAAATCGAGGGTAAAACA
* ** *
67794728 GTAATTCTGTAAATCAAGGGTAAAACGGTAACTCTGT-AAATCGAGGGTA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCT-TCAAATCGAGGGTA
67794777 CTTTAGTAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
54 87 0.97
55 3 0.03
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (54 bp):
GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTTCAAATCGAGGGTAAAACA
Found at i:67796682 original size:15 final size:16
Alignment explanation
Indices: 67796662--67796694 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67796652 GTAATCCCCT
67796662 ACCAAT-CAAACAGTA
1 ACCAATGCAAACAGTA
*
67796677 ACCAATGCATACAGTA
1 ACCAATGCAAACAGTA
67796693 AC
1 AC
67796695 GGACTGGGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.27, G:0.09, T:0.15
Consensus pattern (16 bp):
ACCAATGCAAACAGTA
Found at i:67796919 original size:27 final size:27
Alignment explanation
Indices: 67796886--67796938 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
67796876 TGAAGTTACT
67796886 AACAGTAAATGTGGCATAGCCGCTAAC
1 AACAGTAAATGTGGCATAGCCGCTAAC
67796913 AACAGTAAATGTGGCATAGCCGCTAA
1 AACAGTAAATGTGGCATAGCCGCTAA
67796939 TATCAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
AACAGTAAATGTGGCATAGCCGCTAAC
Found at i:67798974 original size:45 final size:45
Alignment explanation
Indices: 67798869--67799028 Score: 195
Period size: 45 Copynumber: 3.6 Consensus size: 45
67798859 ATTCATCCAT
* * *
67798869 CGGCATT-TCGCCTGCTAGGCTCGAA-G-CCAAATATCATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATTTCAC
* * * *
67798911 CGGAATTATAGCTTGCTAGGCTCGAAGGCCCGAATAGT-ATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA-TCATTTCAC
* *
67798956 TGGCATTATAGCCTGCTAGGATCAAAGGCCCG-ATATCATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATTTCAC
67799000 CGGCATTATAGCCTGCTAGGCTCAAAGGC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGC
67799029 TCGATTAGTA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
42 6 0.06
43 17 0.17
44 37 0.37
45 39 0.39
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (45 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATTTCAC
Found at i:67799016 original size:44 final size:44
Alignment explanation
Indices: 67798869--67799033 Score: 192
Period size: 44 Copynumber: 3.8 Consensus size: 44
67798859 ATTCATCCAT
* * **
67798869 CGGCATT-TCGCCTGCTAGGCTCGAA-GCCAAATATCATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCAC
* * * *
67798911 CGGAATTATAGCTTGCTAGGCTCGAAGGCCCGAATAGT-ATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCG-ATA-TCATTTCAC
* *
67798956 TGGCATTATAGCCTGCTAGGATCAAAGGCCCGATATCATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCAC
*
67799000 CGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAT
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAT
67799034 TAGTACCGTA
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
42 6 0.06
43 17 0.17
44 43 0.42
45 36 0.35
46 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (44 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCAC
Found at i:67805548 original size:42 final size:42
Alignment explanation
Indices: 67805501--67805588 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
67805491 CTTTAGACCT
* **
67805501 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
*
67805543 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCTC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
67805585 ATTT
1 ATTT
67805589 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:67805761 original size:25 final size:26
Alignment explanation
Indices: 67805733--67805830 Score: 155
Period size: 26 Copynumber: 3.8 Consensus size: 26
67805723 CCTCTTTAAT
* **
67805733 AACTGGGGTA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
67805758 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
67805783 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
67805809 AACTGGGGCATAAGCCCTTTTC
1 AACTGGGGCATAAGCCCTTTTC
67805831 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 32 0.46
26 37 0.54
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:67805804 original size:51 final size:51
Alignment explanation
Indices: 67805733--67805830 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
67805723 CCTCTTTAAT
* **
67805733 AACTGGGGTAAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
67805783 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTC
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTC
67805831 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 9 0.21
51 23 0.53
52 11 0.26
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:67806730 original size:27 final size:27
Alignment explanation
Indices: 67806635--67806721 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
67806625 TATTCATCAT
* * *
67806635 TTTACCATACAGGGG-TATTATGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
*
67806662 TTTACCCTACGGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
*
67806689 TTTACCCTACAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
67806716 TTTACC
1 TTTACC
67806722 TAATAGGGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:67806805 original size:27 final size:27
Alignment explanation
Indices: 67806753--67807096 Score: 234
Period size: 27 Copynumber: 12.7 Consensus size: 27
67806743 TTCATCCTAC
* * *
67806753 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
67806780 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* *** * *
67806807 AATGGTATTTCCATAATTTTTAGAAAGT
1 AAGGGTATTTTGGTAA-TTTTACAAACT
* *
67806835 CAAGGGTATTTTTGTAACTTTGTA-AATC-
1 -AAGGGTATTTTGGTAA-TTT-TACAAACT
* *
67806863 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
67806890 GAGGGTATTTCGGTAATTTCACAAAC-
1 AAGGGTATTTTGGTAATTTTACAAACT
*
67806916 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
67806944 -AGGGATATTTTGGTAATTTTACAAATT
1 AAGGG-TATTTTGGTAATTTTACAAACT
* * *
67806971 GAGGGTATTTCGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
67806998 AGGGGTATTTTAGCAATTTTACAGACT
1 AAGGGTATTTTGGTAATTTTACAAACT
**
67807025 -AGGGT-TTTTGGTAATTTTACTGA-T
1 AAGGGTATTTTGGTAATTTTACAAACT
* * ** *
67807049 CGATGGTATTTTGGTAATTTTGTAAACC
1 -AAGGGTATTTTGGTAATTTTACAAACT
*
67807077 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTGGTAATTTT
67807097 GTAAATCGAG
Statistics
Matches: 246, Mismatches: 58, Indels: 26
0.75 0.18 0.08
Matches are distributed among these distances:
24 1 0.00
25 17 0.07
26 17 0.07
27 181 0.74
28 11 0.04
29 17 0.07
30 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:67806962 original size:81 final size:79
Alignment explanation
Indices: 67806865--67807096 Score: 322
Period size: 81 Copynumber: 2.9 Consensus size: 79
67806855 TGTAAATCAG
* *
67806865 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG-GGTATTTTAG
67806930 TAATTTTACAAACTA
65 TAATTTTACAAACTA
67806945 GGGATATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTA
1 GGG-TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCA-GGGTATTTTA
* *
67807010 GCAATTTTACAGACTA
64 GTAATTTTACAAACTA
** * * * **
67807026 GGGT-TTTTGGTAATTTTACTGATCGATGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACC-AGGGTATTTTAG
67807090 TAATTTT
65 TAATTTT
67807097 GTAAATCGAG
Statistics
Matches: 137, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
79 57 0.42
80 5 0.04
81 74 0.54
82 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (79 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGTATTTTAGT
AATTTTACAAACTA
Found at i:67807118 original size:27 final size:27
Alignment explanation
Indices: 67807088--67807218 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
67807078 AGGGTATTTT
*
67807088 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67807115 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67807142 AGTAATTCTTTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67807169 GGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
67807196 GGTAACTCTGTAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
67807219 CTTTAGTAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:67807120 original size:54 final size:54
Alignment explanation
Indices: 67807062--67807218 Score: 199
Period size: 54 Copynumber: 2.9 Consensus size: 54
67807052 TGGTATTTTG
* * ***
67807062 GTAATTTTGTAAACCAAGGGTATTTTAGTAATT-TTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTT-TAAATCGAGGGTAAAACA
**
67807116 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTTTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTTTAAATCGAGGGTAAAACA
** * *
67807170 GTAATTCTGTAAATCAAGGGTAAAACGGTAACTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTTTAAATCGAGGGTA
67807219 CTTTAGTAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
54 89 0.98
55 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTTTAAATCGAGGGTAAAACA
Found at i:67807163 original size:81 final size:81
Alignment explanation
Indices: 67807078--67807263 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
67807068 TTGTAAACCA
* *
67807078 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACAGTAACTCTGTAAATCAAGGGTAAAATA
*
67807143 GTAATTCTT-TAAATCG
66 GTAATT-TTACAAATCG
*** * * * * ***
67807159 AGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGGTAACTCTGTAAATCGAGGGTACTTTA
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACAGTAACTCTGTAAATCAAGGGTAAAATA
*
67807224 GTAATTTTACAAATTG
66 GTAATTTTACAAATCG
* * *
67807240 AGGGCATTTCAGTAATTTGGTAAA
1 AGGGTATTTTAGTAATTTTGTAAA
67807264 CTAAAGTATT
Statistics
Matches: 82, Mismatches: 22, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
80 2 0.02
81 80 0.98
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.33
Consensus pattern (81 bp):
AGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACAGTAACTCTGTAAATCAAGGGTAAAATA
GTAATTTTACAAATCG
Found at i:67807227 original size:27 final size:27
Alignment explanation
Indices: 67807062--67807218 Score: 179
Period size: 27 Copynumber: 5.8 Consensus size: 27
67807052 TGGTATTTTG
* * ***
67807062 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTCTGTAAATCAAGGGTAAAATA
* * *
67807089 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATA
67807116 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATA
* * *
67807143 GTAATTCTTTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCAAGGGTAAAATA
**
67807170 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAATA
* *
67807197 GTAACTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTA
67807219 CTTTAGTAAT
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAATA
Found at i:67809406 original size:10 final size:10
Alignment explanation
Indices: 67809391--67809421 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
67809381 AATAAATCAA
67809391 ATACTTTCAC
1 ATACTTTCAC
67809401 ATACTTTCAC
1 ATACTTTCAC
67809411 ATACTTTCAC
1 ATACTTTCAC
67809421 A
1 A
67809422 CCTTGACCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
ATACTTTCAC
Found at i:67809794 original size:44 final size:45
Alignment explanation
Indices: 67809673--67809808 Score: 206
Period size: 44 Copynumber: 3.1 Consensus size: 45
67809663 GCATTTTGCA
*
67809673 GCCCG-ATATCATTTCACCAGCATTATAGCCTGCTAGGCTCGAAG
1 GCCCGAATATCATTTCACCAGCATTATAGCCTGCTAGGCTCAAAG
* *
67809717 GCCCGAATAGT-ATCTCACCGGCATTATAGCCTGCTAGGCTCAAAG
1 GCCCGAATA-TCATTTCACCAGCATTATAGCCTGCTAGGCTCAAAG
*
67809762 GTCC-AATATCATTTCACCAGCATTATAGCCTGCTAGGCTCAAAG
1 GCCCGAATATCATTTCACCAGCATTATAGCCTGCTAGGCTCAAAG
67809806 GCC
1 GCC
67809809 TGATTAGTAC
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
43 1 0.01
44 43 0.52
45 37 0.45
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (45 bp):
GCCCGAATATCATTTCACCAGCATTATAGCCTGCTAGGCTCAAAG
Found at i:67813982 original size:16 final size:16
Alignment explanation
Indices: 67813963--67813993 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67813953 CTTCTTCACT
67813963 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
67813979 TACTTACTTACTTAA
1 TACTCACTTACTTAA
67813994 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:67813999 original size:20 final size:20
Alignment explanation
Indices: 67813960--67813999 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67813950 AAACTTCTTC
* *
67813960 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
67813980 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
67814000 TTATTAAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:67814376 original size:55 final size:53
Alignment explanation
Indices: 67814238--67814443 Score: 200
Period size: 55 Copynumber: 3.8 Consensus size: 53
67814228 ATCCTTTTGA
* * * *
67814238 AACTTACCATTGCCATGTCTCGACATGGACTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
67814291 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CTTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATC-CTTGCCTTAT-G
* **
67814345 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * ** *
67814398 AAACCTTACCAATTGTCATGCCTTGGGATGGTCTTACATGGTATCC
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCC
67814444 CTAACCCTAA
Statistics
Matches: 125, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 1 0.01
53 45 0.36
54 8 0.06
55 70 0.56
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:67814388 original size:108 final size:110
Alignment explanation
Indices: 67814238--67814438 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
67814228 ATCCTTTTGA
* *
67814238 AACTTACCATTGCCATGTCTCGACATGGACTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGACTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
67814301 -TGCCATGCCTTGGCATGGTCTTACATGGGACTTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACTTTTGCCTTATAGT
* * * *
67814346 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGACTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
* *
67814411 TGTCATGCCTTGGGATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
67814439 TATCCCTAAC
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGACTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACTTTTGCCTTATAGT
Found at i:67817957 original size:39 final size:39
Alignment explanation
Indices: 67817856--67818022 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 39
67817846 AAATTGAATG
* * * * *
67817856 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTG--ATT
**
67817896 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGC-AGTGATT
*
67817936 ATATCC-GGTTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGC-AGTGATT
* * *
67817975 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCA-GTGATT
67818015 ATATCCGG
1 ATATCCGG
67818023 TTATATTCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
38 3 0.03
39 31 0.30
40 67 0.64
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGATT
Found at i:67822636 original size:29 final size:29
Alignment explanation
Indices: 67822596--67822698 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
67822586 GTTGAGAGAT
*
67822596 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
67822625 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
67822654 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
67822683 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67822699 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:67833409 original size:29 final size:29
Alignment explanation
Indices: 67833376--67833507 Score: 203
Period size: 29 Copynumber: 4.6 Consensus size: 29
67833366 GTTGAGAGAT
* *
67833376 TGGCACTGAGCGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
67833405 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
67833434 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
67833463 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
67833492 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67833508 CGGCTGATTA
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 5 0.05
29 92 0.95
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:67837081 original size:30 final size:29
Alignment explanation
Indices: 67837047--67837110 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
67837037 ATGAATCAGA
67837047 AGCTTTGGCACTAACTATGCGATTTAAACT
1 AGCTTTGGCACTAACTATGCGATTT-AACT
* *
67837077 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAACTATGCGATTTAACT
67837106 AGCTT
1 AGCTT
67837111 CGGCTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAACTATGCGATTTAACT
Found at i:67838596 original size:19 final size:20
Alignment explanation
Indices: 67838572--67838609 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67838562 GGTACCACCA
67838572 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
67838591 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
67838610 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:67838976 original size:46 final size:44
Alignment explanation
Indices: 67838835--67838969 Score: 127
Period size: 45 Copynumber: 3.0 Consensus size: 44
67838825 CCCGCCCCTA
67838835 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCA-TC
* * * *
67838882 A--CAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATC
67838926 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
67838970 CTAGTGACAT
Statistics
Matches: 72, Mismatches: 8, Indels: 19
0.73 0.08 0.19
Matches are distributed among these distances:
44 10 0.14
45 30 0.42
46 27 0.38
47 4 0.06
48 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:67846503 original size:46 final size:43
Alignment explanation
Indices: 67846361--67846496 Score: 132
Period size: 46 Copynumber: 3.0 Consensus size: 43
67846351 CCCGCCCCTA
67846361 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TC
** * * *
67846408 A-CAAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATC
67846453 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATC
67846497 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 11, Indels: 13
0.75 0.11 0.13
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 56 0.77
47 1 0.01
48 4 0.05
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATC
Found at i:67851984 original size:25 final size:25
Alignment explanation
Indices: 67851665--67851970 Score: 522
Period size: 25 Copynumber: 12.2 Consensus size: 25
67851655 TAAGCTTGTT
*
67851665 AATTTGTTCTTAATAATTCCGATTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
67851690 AATTTGCTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
67851715 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
67851740 CATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
67851765 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
67851790 AATTTGCTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
67851815 AATTTGCTCTGAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
67851840 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
67851865 AATTTGCTCTTAATAATTCTGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
67851890 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
67851915 AATTTGTTCTTAATAATTCTGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
67851940 AATTTGTTCTTAATAATTCCAGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
67851965 AATTTG
1 AATTTG
67851971 CCCTTATTAT
Statistics
Matches: 265, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 265 1.00
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (25 bp):
AATTTGTTCTTAATAATTCCGGTTA
Found at i:67862028 original size:40 final size:40
Alignment explanation
Indices: 67861983--67862149 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
67861973 CGGAATATAA
67861983 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
67862023 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67862063 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67862103 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67862142 CCGGATAT
1 CCGGATAT
67862150 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67862133 original size:80 final size:79
Alignment explanation
Indices: 67861999--67862149 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67861989 ATAATCACGT
*
67861999 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
67862064 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67862079 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
67862142 CCGGATAT
64 CCGGATAT
67862150 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Done.