Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 226 of 328
Found at i:67868403 original size:51 final size:49
Alignment explanation
Indices: 67868297--67868550 Score: 463
Period size: 49 Copynumber: 5.1 Consensus size: 49
67868287 ATGTATGAGA
67868297 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
67868346 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67868395 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGCAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67868444 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
67868493 TATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 --TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
67868544 TATATAT
1 TATATAT
67868551 GTAACACCCC
Statistics
Matches: 198, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
49 151 0.76
51 47 0.24
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:67871300 original size:40 final size:40
Alignment explanation
Indices: 67871255--67871421 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
67871245 CGGAATATAA
67871255 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
67871295 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
67871335 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
67871375 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
67871414 CCGGATAT
1 CCGGATAT
67871422 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67871405 original size:80 final size:79
Alignment explanation
Indices: 67871271--67871419 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
67871261 ATAACCACGT
*
67871271 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
67871336 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
67871351 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
67871414 CCGGAT
64 CCGGAT
67871420 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:67873161 original size:40 final size:40
Alignment explanation
Indices: 67873116--67873245 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67873106 CGGAATACAA
67873116 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
67873156 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
67873196 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
67873236 CCGGATATAA
1 CCGGATATAA
67873246 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:67884061 original size:49 final size:49
Alignment explanation
Indices: 67883916--67884224 Score: 502
Period size: 49 Copynumber: 6.4 Consensus size: 49
67883906 TACATATATG
* * * *
67883916 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
67883963 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTA--TATA
1 TGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
67884010 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
67884059 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
67884108 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
67884157 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
67884206 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
67884225 TAATGTAAAA
Statistics
Matches: 253, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 83 0.33
49 169 0.67
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:67884413 original size:36 final size:37
Alignment explanation
Indices: 67884326--67884446 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
67884316 GGAATATGTT
*
67884326 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
67884363 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
67884400 CC-GGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
67884436 CCGGGTAAGAC
1 CCGGGTAAGAC
67884447 TTCGTAATAA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
36 35 0.43
37 46 0.57
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:67886603 original size:29 final size:29
Alignment explanation
Indices: 67886537--67886725 Score: 344
Period size: 29 Copynumber: 6.6 Consensus size: 29
67886527 CGTTAACCGA
67886537 GCACTATGTGTGCGAGATCAGTAA-TGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
67886565 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
*
67886594 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
*
67886623 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
67886652 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
67886681 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
*
67886710 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
67886726 TTTTTCAACA
Statistics
Matches: 157, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
28 24 0.15
29 133 0.85
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATTGAG
Found at i:67890360 original size:49 final size:49
Alignment explanation
Indices: 67890239--67890457 Score: 336
Period size: 49 Copynumber: 4.5 Consensus size: 49
67890229 TACATATATG
* * *
67890239 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
67890286 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCC-TAATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
* *
67890335 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
* *
67890384 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
*
67890433 TGTGATAAGGCCTAATGGCTAATGT
1 TGTGATAAGGCCTAATGGCCAATGT
67890458 AAAATATATG
Statistics
Matches: 161, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
47 40 0.25
48 1 0.01
49 120 0.75
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
Found at i:67890603 original size:37 final size:37
Alignment explanation
Indices: 67890553--67890637 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
67890543 GGAATATGTT
*
67890553 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
67890590 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
67890627 CCGGGTAAGAC
1 CCGGGTAAGAC
67890638 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:67900328 original size:24 final size:24
Alignment explanation
Indices: 67900276--67900328 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
67900266 TCAGCTCGAT
*
67900276 AGAGCTTACCGTTTCAGCTCAAGA
1 AGAGCTTACCGTATCAGCTCAAGA
*
67900300 GGAGCTTACCG-ATCATGGCTCAA-A
1 AGAGCTTACCGTATCA--GCTCAAGA
67900324 AGAGC
1 AGAGC
67900329 ATAAATGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
23 3 0.12
24 15 0.62
25 6 0.25
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (24 bp):
AGAGCTTACCGTATCAGCTCAAGA
Found at i:67901517 original size:14 final size:14
Alignment explanation
Indices: 67901498--67901529 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
67901488 TTGAATGAGA
67901498 GTATGGTGTTATAT
1 GTATGGTGTTATAT
67901512 GTATGGTGTTATAT
1 GTATGGTGTTATAT
67901526 GTAT
1 GTAT
67901530 TCTTATAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (14 bp):
GTATGGTGTTATAT
Found at i:67903639 original size:29 final size:29
Alignment explanation
Indices: 67903606--67903679 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
67903596 GTGACGAGAT
67903606 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
67903635 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
67903664 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67903680 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:67903695 original size:29 final size:29
Alignment explanation
Indices: 67903663--67903738 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
67903653 CTGGAAATAT
* *
67903663 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
67903692 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
67903721 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
67903739 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:67911519 original size:29 final size:29
Alignment explanation
Indices: 67911486--67911559 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
67911476 GTGACGAGAT
67911486 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
67911515 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
67911544 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67911560 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:67911575 original size:29 final size:28
Alignment explanation
Indices: 67911543--67911617 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
67911533 CTGGAAATAT
* *
67911543 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
67911572 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
67911600 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
67911618 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:67911586 original size:58 final size:57
Alignment explanation
Indices: 67911486--67911617 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
67911476 GTGACGAGAT
* * * * * *
67911486 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
67911544 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
67911601 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
67911618 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:67922002 original size:48 final size:46
Alignment explanation
Indices: 67921944--67922063 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 46
67921934 ACGCCGATGT
* *
67921944 ATGTCTCAGACATGTCTTACACTGGCT-TAAATATCT-TAAGGCCAATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCT-AATAT-TGT--GGCCAATGC
* * * *
67921992 ATGTCCCAGACATATCTTACACTAGCTCTCATATTGTGTCCTATGC
1 ATGTCCCAGACATGTCTTACACTAGCTCTAATATTGTGGCCAATGC
*
67922038 ATGTCCCAGACACGTCTTACACTAGC
1 ATGTCCCAGACATGTCTTACACTAGC
67922064 ACACGTATCA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
46 31 0.50
47 1 0.02
48 29 0.47
49 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTAATATTGTGGCCAATGC
Found at i:67924491 original size:31 final size:31
Alignment explanation
Indices: 67924456--67924519 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
67924446 CCTTTTCATG
67924456 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
67924487 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
67924518 TT
1 TT
67924520 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:67924761 original size:24 final size:24
Alignment explanation
Indices: 67924710--67924875 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
67924700 GCTTTATCAT
* *
67924710 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
67924735 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
67924759 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
*
67924782 ATAACTGGGG-ATAACCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
67924805 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
67924829 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
67924853 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67924876 TCACATCCTC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
22 11 0.08
23 20 0.15
24 90 0.68
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:67924809 original size:70 final size:72
Alignment explanation
Indices: 67924710--67924875 Score: 246
Period size: 70 Copynumber: 2.3 Consensus size: 72
67924700 GCTTTATCAT
* * *
67924710 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
1 ATAACTGG-GGCATAACCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG
67924775 CCCTTTT-
65 CCCTTTTG
* * *
67924782 ATAACTGGGG-ATAACCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAACCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
67924846 CCTTTTG
66 CCTTTTG
*
67924853 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAACCCCTTTT
67924876 TCACATCCTC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
70 54 0.64
71 12 0.14
72 19 0.22
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (72 bp):
ATAACTGGGGCATAACCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTTG
Found at i:67924947 original size:9 final size:9
Alignment explanation
Indices: 67924933--67924985 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
67924923 ACATCATGTG
67924933 CATATCATA
1 CATATCATA
*
67924942 CATATCATGTG
1 CATATCA--TA
67924953 CATATCATA
1 CATATCATA
*
67924962 CATGTCATGA
1 CATATCAT-A
67924972 GCATATCATA
1 -CATATCATA
67924982 CATA
1 CATA
67924986 CCATGTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 19 0.53
10 2 0.06
11 15 0.42
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (9 bp):
CATATCATA
Found at i:67924950 original size:20 final size:20
Alignment explanation
Indices: 67924925--67924991 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
67924915 TTATGATTAC
67924925 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
67924945 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
67924965 GTCATGAGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67924985 ACCATGT
1 ATCATGT
67924992 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67925060 original size:25 final size:25
Alignment explanation
Indices: 67925028--67925075 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67925018 ATACATAAAC
* * *
67925028 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67925053 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67925076 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67926929 original size:6 final size:6
Alignment explanation
Indices: 67926910--67926986 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
67926900 TCAGAACTAA
* * * *
67926910 AATCAG AATTAG AATCAG AATCAG -GTGACAG AATCAG GATTAG AATCAG
1 AATCAG AATCAG AATCAG AATCAG AAT--CAG AATCAG AATCAG AATCAG
* *
67926959 TATCAGG TAA-CAG AATCAA AATCAG AAT
1 AATCA-G -AATCAG AATCAG AATCAG AAT
67926987 GTGAATACAA
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
5 3 0.06
6 42 0.79
7 6 0.11
8 2 0.04
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (6 bp):
AATCAG
Found at i:67926952 original size:31 final size:31
Alignment explanation
Indices: 67926910--67926986 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
67926900 TCAGAACTAA
*
67926910 AATCAGAATTAGAATCAGAATCAGGTGACAG
1 AATCAGAATTAGAATCAGAATCAGGTAACAG
* *
67926941 AATCAGGATTAGAATCAGTATCAGGTAACAG
1 AATCAGAATTAGAATCAGAATCAGGTAACAG
* *
67926972 AATCAAAATCAGAAT
1 AATCAGAATTAGAAT
67926987 GTGAATACAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (31 bp):
AATCAGAATTAGAATCAGAATCAGGTAACAG
Found at i:67927171 original size:27 final size:26
Alignment explanation
Indices: 67927123--67927224 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
67927113 GCTCAGTTAT
* *
67927123 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGA-A
*
67927150 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAAAGCCACCAGAA
*
67927176 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAG-AA
*
67927204 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
67927225 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 7 0.10
27 52 0.78
28 8 0.12
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAAAGCCACCAGAA
Found at i:67927250 original size:54 final size:55
Alignment explanation
Indices: 67927133--67927250 Score: 125
Period size: 54 Copynumber: 2.2 Consensus size: 55
67927123 CAGATATTGT
* * * * **
67927133 GACAAAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATTTGTG
1 GACAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACCAGAACAGATATACGTG
* **
67927188 G-CATAGCCACCAGAAACAGATAATGTGGCAAAGCCA-CTTAACAGA-ATACGTG
1 GACAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACCAGAACAGATATACGTG
67927240 GCACAAAGCCA
1 G-ACAAAGCCA
67927251 TCGATAACTG
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
52 6 0.12
53 7 0.14
54 37 0.73
55 1 0.02
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (55 bp):
GACAAAGCCACCAGAAACAGATAATGTGGCAAAGCCACCAGAACAGATATACGTG
Found at i:67927987 original size:81 final size:81
Alignment explanation
Indices: 67927871--67928146 Score: 367
Period size: 81 Copynumber: 3.4 Consensus size: 81
67927861 GGGGCAAAAT
* * * * * *
67927871 GGTAATTTTACCCCACA-AGGTATCTCAGTAATTCTACCCTATAGGGGTATTTC-GATAATTCTA
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAG-TAATTCTA
* *
67927934 CCTTACAGGGGTATTGC
65 CCCTACAGGGGTATTTC
* * * * *
67927951 GATAATTCTACCCTACAGAGGTATTTTGGTAATTCTACCCTATATGGGTATTTCAGTAATTTTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTAC
*
67928016 CCTACAGGGGTATTTT
66 CCTACAGGGGTATTTC
* *
67928032 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTAGTAGTTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTAC
*
67928097 CCTATAGGGGTATTTC
66 CCTACAGGGGTATTTC
*
67928113 GGTAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATT
67928147 TCACAATTGA
Statistics
Matches: 173, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
80 14 0.08
81 158 0.91
82 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:67928144 original size:27 final size:27
Alignment explanation
Indices: 67927872--67928146 Score: 313
Period size: 27 Copynumber: 10.2 Consensus size: 27
67927862 GGGCAAAATG
* * * *
67927872 GTAATTTTACCCCACA-AGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67927898 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
67927924 GATAATTCTACCTTACAGGGGTATTGC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
* **
67927951 GATAATTCTACCCTACAGAGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
67927979 GTAATTCTACCCTATATGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
67928006 GTAATTTTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67928033 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
67928060 GTAATTCTACCCTATAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
67928087 GTAGTTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
67928114 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
67928141 GTAATT
1 GTAATT
67928147 TCACAATTGA
Statistics
Matches: 211, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 14 0.07
27 196 0.93
28 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:67928185 original size:27 final size:27
Alignment explanation
Indices: 67928155--67928452 Score: 402
Period size: 27 Copynumber: 11.0 Consensus size: 27
67928145 TTTCACAATT
*
67928155 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * * *
67928182 GAGGGTAAAATGATAATTTTGTAAACC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * *
67928209 GAGGGTAAACCAGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* ** *
67928236 GAGGGTAAAACGGTAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
67928263 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
67928290 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
67928317 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
**
67928344 GAGGGTAAAATAGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
67928370 TGAGGATAAAACGGTAATTCTGTAAA-C
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* *
67928397 TGAGGGTAAAATGGTAATTCTATAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
67928425 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
67928452 G
1 G
67928453 GGAGTACTTT
Statistics
Matches: 236, Mismatches: 33, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 234 0.99
28 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:67928481 original size:54 final size:54
Alignment explanation
Indices: 67928141--67928483 Score: 399
Period size: 54 Copynumber: 6.4 Consensus size: 54
67928131 GGGTATTTCA
* * *
67928141 GTAATTTCAC-AATTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* ** * * * * *
67928194 ATAATTTTGTAAACCGAGGGTAAACCAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* *
67928248 GTAATTTTACAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* * *
67928302 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
* *
67928356 GTAATTCTGTA-AACT-GAGGATAAAACGGTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAATG
* * ***
67928410 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCG-GGAGTACTTTG
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG-GTAAAATG
*
67928464 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAAATCGAGGG
67928484 CATTTCAGTA
Statistics
Matches: 247, Mismatches: 35, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.01
53 12 0.05
54 227 0.92
55 4 0.02
56 2 0.01
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATG
Found at i:67928483 original size:81 final size:81
Alignment explanation
Indices: 67928141--67928483 Score: 363
Period size: 81 Copynumber: 4.2 Consensus size: 81
67928131 GGGTATTTCA
* * * * * * *
67928141 GTAATTTCAC-AATTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
* * *
67928205 AACCGAGGGTAAACCA
66 AATCGAGGGTAAAACG
* * * * *
67928221 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
67928286 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * **
67928302 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
*
67928367 AA-CTGAGGATAAAACG
66 AATC-GAGGGTAAAACG
* *
67928383 GTAATTCTGTA-AACT-GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
1 GTAATT-T-TACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
****
67928446 TAAATCG-GGAGTACTTTG
64 TAAATCGAGG-GTAAAACG
*
67928464 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAAATCGAGGG
67928484 CATTTCAGTA
Statistics
Matches: 221, Mismatches: 34, Indels: 15
0.82 0.13 0.06
Matches are distributed among these distances:
79 2 0.01
80 14 0.06
81 199 0.90
82 4 0.02
83 2 0.01
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:67930567 original size:42 final size:44
Alignment explanation
Indices: 67930502--67930615 Score: 108
Period size: 45 Copynumber: 2.6 Consensus size: 44
67930492 ACTGACATTC
* * ** *
67930502 AGCCTGCTAGGTTTAAAAACCTGAAT-TCAT-TCACCGGCATT-T
1 AGCCTGCTAGGCTCAAAGGCCTGAATAT-ATCTCACCAGCATTAT
*
67930544 TGCCTGCTAGGCTCAAAGGCCTGAATAATATCTCACCAGCATTAT
1 AGCCTGCTAGGCTCAAAGGCCTGAAT-ATATCTCACCAGCATTAT
* * *
67930589 AACCTGCTAGGCTCAGAGGCCCGAATA
1 AGCCTGCTAGGCTCAAAGGCCTGAATA
67930616 GTACAGCACA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 21 0.36
43 2 0.03
44 12 0.21
45 23 0.40
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (44 bp):
AGCCTGCTAGGCTCAAAGGCCTGAATATATCTCACCAGCATTAT
Found at i:67945956 original size:39 final size:39
Alignment explanation
Indices: 67945911--67945995 Score: 161
Period size: 39 Copynumber: 2.2 Consensus size: 39
67945901 ACCCAATACA
67945911 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
1 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
67945950 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
1 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
67945989 AACTTAT
1 AA-TTAT
67945996 TTAAAGTTCC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 41 0.91
40 4 0.09
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (39 bp):
AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
Found at i:67949985 original size:21 final size:20
Alignment explanation
Indices: 67949957--67949995 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
67949947 CAAAACTTGT
*
67949957 ATAACTATTATCAAACATTC
1 ATAACTATCATCAAACATTC
67949977 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
67949996 CAAAATAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:67950395 original size:16 final size:17
Alignment explanation
Indices: 67950374--67950408 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
67950364 ACCTCCACTT
67950374 TAAAAACC-ATAGCTAA
1 TAAAAACCTATAGCTAA
*
67950390 TAAAAACCTTTAGCTAA
1 TAAAAACCTATAGCTAA
67950407 TA
1 TA
67950409 GAACTAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26
Consensus pattern (17 bp):
TAAAAACCTATAGCTAA
Found at i:67954857 original size:47 final size:47
Alignment explanation
Indices: 67954780--67954941 Score: 252
Period size: 47 Copynumber: 3.4 Consensus size: 47
67954770 AACTCGTTGA
* * * *
67954780 GTTGAGTCTGAGTTCGAGTTCGAGAGATGTAACTAGGCATCTGAGCTC
1 GTTGAGT-TGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTC
67954828 GTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTC
* * *
67954875 GTTGAGTTGTGTCCGAGTTTGTGAAATGTAACTAGGCATCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTC
67954922 GTTGAGTTGAGTCCGAGTTC
1 GTTGAGTTGAGTCCGAGTTC
67954942 ACTTATGGAC
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 98 0.93
48 7 0.07
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (47 bp):
GTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTC
Found at i:67957797 original size:15 final size:15
Alignment explanation
Indices: 67957749--67957828 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
67957739 GTATCTTGGG
* *
67957749 TTTCTATATCCTGGA
1 TTTCTTTATTCTGGA
*
67957764 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
67957779 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
67957794 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
* *
67957809 TTTCTCTATTC-GGT
1 TTTCTTTATTCTGGA
67957823 TTTCTT
1 TTTCTT
67957829 ATTATCTTTG
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 43 0.80
16 2 0.04
ACGTcount: A:0.11, C:0.19, G:0.14, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:67957809 original size:30 final size:30
Alignment explanation
Indices: 67957740--67957827 Score: 81
Period size: 30 Copynumber: 3.0 Consensus size: 30
67957730 CATAATATCG
* * * *
67957740 TATCTTGGGTTTCTATATCCTGGATCTCTT
1 TATCTTGGATTTCTATATTCTGGATTTCTC
* *
67957770 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTATATTCTGGATTTCTC
* *
67957800 TATCTTGGATTTCTCTATTC-GGTTTTCT
1 TATCTTGGATTTCTATATTCTGGATTTCT
67957828 TATTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.11, C:0.18, G:0.16, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTATATTCTGGATTTCTC
Found at i:67960319 original size:53 final size:47
Alignment explanation
Indices: 67960254--67960382 Score: 177
Period size: 47 Copynumber: 2.6 Consensus size: 47
67960244 GATGCGAATG
67960254 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC--G-T-GA-A-ATGTAACTAGGCA
* * *
67960307 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
67960354 TCCGAACTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC
67960383 ACTTATGGAC
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
47 39 0.56
48 1 0.01
49 2 0.03
50 1 0.01
51 1 0.01
53 26 0.37
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
Found at i:67966231 original size:48 final size:48
Alignment explanation
Indices: 67966160--67966446 Score: 344
Period size: 48 Copynumber: 6.0 Consensus size: 48
67966150 AATCAGGAGT
* * * * *
67966160 CTCGCACACTAAGTGCTC-ATATCATGGCCCAAAGCCAACTCAATA-TAT
1 CTCGCACTCGAAGTGC-CGATATCATGGCCCGAAGCCAAATCAA-AGTAA
* *
67966208 CTCGCACTCGAAGTCCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
1 CTCGCACTCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAAAGTAA
* ** * *
67966256 CTCGCATTCGAAGTGTTGATATCATGGACCGAAGCCAAATTAAAGTAA
1 CTCGCACTCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAAAGTAA
* * *
67966304 CTCACACCCGAAGAGCCGATATCATGGCCCGAAGCCAAATCAAAGTAA
1 CTCGCACTCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAAAGTAA
* ** *
67966352 CTCGCATTCGAAGTGTTGATATCATGGACCGAAGCCAAATCAAAGTAA
1 CTCGCACTCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAAAGTAA
* * *
67966400 CTCACACCCGAAGAGCCGATATCATGGCCCGAAGCCAAATCAAAGTA
1 CTCGCACTCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAAAGTA
67966447 TTTCCTAATG
Statistics
Matches: 202, Mismatches: 35, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
47 2 0.01
48 200 0.99
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.19
Consensus pattern (48 bp):
CTCGCACTCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAAAGTAA
Found at i:67966326 original size:96 final size:96
Alignment explanation
Indices: 67966226--67966446 Score: 433
Period size: 96 Copynumber: 2.3 Consensus size: 96
67966216 CGAAGTCCCA
67966226 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTGTTGATATCATGGACCGAAGC
1 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTGTTGATATCATGGACCGAAGC
*
67966291 CAAATTAAAGTAACTCACACCCGAAGAGCCG
66 CAAATCAAAGTAACTCACACCCGAAGAGCCG
67966322 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTGTTGATATCATGGACCGAAGC
1 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTGTTGATATCATGGACCGAAGC
67966387 CAAATCAAAGTAACTCACACCCGAAGAGCCG
66 CAAATCAAAGTAACTCACACCCGAAGAGCCG
67966418 ATATCATGGCCCGAAGCCAAATCAAAGTA
1 ATATCATGGCCCGAAGCCAAATCAAAGTA
67966447 TTTCCTAATG
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 124 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.18
Consensus pattern (96 bp):
ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTGTTGATATCATGGACCGAAGC
CAAATCAAAGTAACTCACACCCGAAGAGCCG
Found at i:67967078 original size:17 final size:17
Alignment explanation
Indices: 67967056--67967091 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
67967046 ATTCAAGATC
67967056 TTTAACAGTTTTGTAAA
1 TTTAACAGTTTTGTAAA
67967073 TTTAACAGTTTTGTAAA
1 TTTAACAGTTTTGTAAA
67967090 TT
1 TT
67967092 AGTCCCTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (17 bp):
TTTAACAGTTTTGTAAA
Found at i:67976023 original size:18 final size:19
Alignment explanation
Indices: 67975985--67976027 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
67975975 AACAATTAAT
67975985 AATTAATATATGCATATTA
1 AATTAATATATGCATATTA
* *
67976004 AATTATTATTTGCA-ATTA
1 AATTAATATATGCATATTA
67976022 AATTAA
1 AATTAA
67976028 AAATAAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (19 bp):
AATTAATATATGCATATTA
Found at i:67978464 original size:17 final size:18
Alignment explanation
Indices: 67978432--67978466 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
67978422 TTCTTGGTTA
*
67978432 AATAGGCCATATGGGCTC
1 AATAGGCCACATGGGCTC
67978450 AATAGGCC-CATGGGCTC
1 AATAGGCCACATGGGCTC
67978467 GCGTGGGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.20
Consensus pattern (18 bp):
AATAGGCCACATGGGCTC
Found at i:67978850 original size:27 final size:27
Alignment explanation
Indices: 67978803--67979107 Score: 266
Period size: 27 Copynumber: 11.4 Consensus size: 27
67978793 TTAAGACCTT
*
67978803 GATTTGTAAAATTACCAAAATACCCTC
1 GATTTGTAAAATTACCGAAATACCCTC
* *
67978830 GAGTTATAAAATTACCGAAATA-CCTC
1 GATTTGTAAAATTACCGAAATACCCTC
* * * *
67978856 TATTTGTTAAATTATCGAAATACACCTA
1 GATTTGTAAAATTACCGAAATAC-CCTC
* *
67978884 G-GTTGTAAAATTACCAAAATACTCCT-
1 GATTTGTAAAATTACCGAAATAC-CCTC
* **
67978910 GATTTGTGAAATTAATGAAATACCC-C
1 GATTTGTAAAATTACCGAAATACCCTC
*
67978936 TGATTTGTAAAATTACCAAAATACCCTC
1 -GATTTGTAAAATTACCGAAATACCCTC
* *
67978964 GAGTTATAAAATTACCGAAATA-CCTC
1 GATTTGTAAAATTACCGAAATACCCTC
* * * *
67978990 TATTTGTTAAATTATCGAAATACACCTA
1 GATTTGTAAAATTACCGAAATAC-CCTC
* *
67979018 G-GTTGTAAAATTACCAAAATACTCCT-
1 GATTTGTAAAATTACCGAAATAC-CCTC
* **
67979044 GATTTGTGAAATTAATGAAATACCC-C
1 GATTTGTAAAATTACCGAAATACCCTC
* *
67979070 TGATTTGTAAAATTACCAAAATACCCCC
1 -GATTTGTAAAATTACCGAAATACCCTC
67979098 GATTTGTAAA
1 GATTTGTAAA
67979108 TGACCATAAT
Statistics
Matches: 218, Mismatches: 48, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
26 48 0.22
27 162 0.74
28 8 0.04
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
GATTTGTAAAATTACCGAAATACCCTC
Found at i:67979042 original size:134 final size:134
Alignment explanation
Indices: 67978802--67979095 Score: 588
Period size: 134 Copynumber: 2.2 Consensus size: 134
67978792 GTTAAGACCT
67978802 TGATTTGTAAAATTACCAAAATACCCTCGAGTTATAAAATTACCGAAATACCTCTATTTGTTAAA
1 TGATTTGTAAAATTACCAAAATACCCTCGAGTTATAAAATTACCGAAATACCTCTATTTGTTAAA
67978867 TTATCGAAATACACCTAGGTTGTAAAATTACCAAAATACTCCTGATTTGTGAAATTAATGAAATA
66 TTATCGAAATACACCTAGGTTGTAAAATTACCAAAATACTCCTGATTTGTGAAATTAATGAAATA
67978932 CCCC
131 CCCC
67978936 TGATTTGTAAAATTACCAAAATACCCTCGAGTTATAAAATTACCGAAATACCTCTATTTGTTAAA
1 TGATTTGTAAAATTACCAAAATACCCTCGAGTTATAAAATTACCGAAATACCTCTATTTGTTAAA
67979001 TTATCGAAATACACCTAGGTTGTAAAATTACCAAAATACTCCTGATTTGTGAAATTAATGAAATA
66 TTATCGAAATACACCTAGGTTGTAAAATTACCAAAATACTCCTGATTTGTGAAATTAATGAAATA
67979066 CCCC
131 CCCC
67979070 TGATTTGTAAAATTACCAAAATACCC
1 TGATTTGTAAAATTACCAAAATACCC
67979096 CCGATTTGTA
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 160 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (134 bp):
TGATTTGTAAAATTACCAAAATACCCTCGAGTTATAAAATTACCGAAATACCTCTATTTGTTAAA
TTATCGAAATACACCTAGGTTGTAAAATTACCAAAATACTCCTGATTTGTGAAATTAATGAAATA
CCCC
Found at i:67979174 original size:54 final size:53
Alignment explanation
Indices: 67979103--67979207 Score: 165
Period size: 54 Copynumber: 2.0 Consensus size: 53
67979093 CCCCCGATTT
* * * *
67979103 GTAAATGACCATAATACCCTTGTAGGGTAAAATGACCGTAATGCCCTTGTAGG
1 GTAAATGACCATAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTAGG
67979156 GTAAACTGACCATAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTA
1 GTAAA-TGACCATAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTA
67979208 TTGCAAATTG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.11
54 42 0.89
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (53 bp):
GTAAATGACCATAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTAGG
Found at i:67979219 original size:27 final size:27
Alignment explanation
Indices: 67979105--67979207 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
67979095 CCCGATTTGT
*
67979105 AAATGACCATAATACCCTTGTAGGGTA
1 AAATGACCATAATACCCCTGTAGGGTA
* * *
67979132 AAATGACCGTAATGCCCTTGTAGGGTA
1 AAATGACCATAATACCCCTGTAGGGTA
* *
67979159 AACTGACCATAATACCCCTATAGGGTA
1 AAATGACCATAATACCCCTGTAGGGTA
*
67979186 AAATGACCGTAATACCCCTGTA
1 AAATGACCATAATACCCCTGTA
67979208 TTGCAAATTG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (27 bp):
AAATGACCATAATACCCCTGTAGGGTA
Found at i:67979415 original size:27 final size:26
Alignment explanation
Indices: 67979385--67979435 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
67979375 TATTCACTAT
67979385 TACTGGTGGCTATGACACAATTACTGA
1 TACTGGTGGCT-TGACACAATTACTGA
* *
67979412 TACTGGTGGCTTGCCACATTTACT
1 TACTGGTGGCTTGACACAATTACT
67979436 ATTTCTGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (26 bp):
TACTGGTGGCTTGACACAATTACTGA
Found at i:67979443 original size:26 final size:27
Alignment explanation
Indices: 67979358--67979443 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
67979348 AGAAGTACTG
* * *
67979358 TACTGGTGACTATGTCA-TATTCACTAT
1 TACTGGTGGCTATGACACAATT-ACTAT
67979385 TACTGGTGGCTATGACACAATTACTGA-
1 TACTGGTGGCTATGACACAATTACT-AT
* *
67979412 TACTGGTGGCT-TGCCACATTTACTAT
1 TACTGGTGGCTATGACACAATTACTAT
*
67979438 TTCTGG
1 TACTGG
67979444 CAGCTATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
25 1 0.02
26 16 0.32
27 29 0.58
28 4 0.08
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
TACTGGTGGCTATGACACAATTACTAT
Found at i:67979646 original size:28 final size:30
Alignment explanation
Indices: 67979598--67979714 Score: 94
Period size: 33 Copynumber: 3.8 Consensus size: 30
67979588 ACTGTACTAA
* * *
67979598 TACTGTATTGGGCTTAGGCCCAC-A-GTGT
1 TACTGTATAGGGCTAAGGCCCACTATCTGT
*
67979626 TACTGTATAGGGCTAAAGCCCAGACTATTCTGT
1 TACTGTATAGGGCTAAGGCCC--ACTA-TCTGT
* *
67979659 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCC--ACTAT-CTGT
* *
67979692 TACTGGATAGGGCTCAGGCCCAC
1 TACTGTATAGGGCTAAGGCCCAC
67979715 ACAGTTACTG
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
28 18 0.24
30 2 0.03
31 3 0.04
32 1 0.01
33 50 0.68
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (30 bp):
TACTGTATAGGGCTAAGGCCCACTATCTGT
Found at i:67979711 original size:33 final size:33
Alignment explanation
Indices: 67979626--67979713 Score: 122
Period size: 33 Copynumber: 2.7 Consensus size: 33
67979616 CCCACAGTGT
* * *
67979626 TACTGTATAGGGCTAAAGCCCAGACTATTCTGT
1 TACTGTATAGGGCTAAGGCCCAGACTATACTGA
*
67979659 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTATACTGA
* *
67979692 TACTGGATAGGGCTCAGGCCCA
1 TACTGTATAGGGCTAAGGCCCA
67979714 CACAGTTACT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAGACTATACTGA
Found at i:67984417 original size:27 final size:26
Alignment explanation
Indices: 67984377--67984556 Score: 121
Period size: 27 Copynumber: 6.7 Consensus size: 26
67984367 GATCGTTAAA
*
67984377 ACCCC-GATTTGTAAAATTACCGAAAT
1 ACCCCGGA-TTGTAAAATTACCAAAAT
* * *
67984403 ACTCCCGGGTTGTAAAATTATCAAGAT
1 AC-CCCGGATTGTAAAATTACCAAAAT
** *
67984430 ACCCATGATTTTAAAATTACCAAAAT
1 ACCCCGGATTGTAAAATTACCAAAAT
* * **
67984456 ACCATCGAATTGTAAAATTACTGAAAT
1 ACC-CCGGATTGTAAAATTACCAAAAT
67984483 ACCCCTAGG-TTGTAAAATTACCAAAAT
1 ACCCC--GGATTGTAAAATTACCAAAAT
* ** * *
67984510 ACCTCTAATTTGTGAAATTACTAAAAT
1 ACCCCGGA-TTGTAAAATTACCAAAAT
**
67984537 ACCCCAAATTTGTAAAATTA
1 ACCCCGGA-TTGTAAAATTA
67984557 TTGAAATACC
Statistics
Matches: 118, Mismatches: 29, Indels: 13
0.74 0.18 0.08
Matches are distributed among these distances:
26 24 0.20
27 92 0.78
28 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (26 bp):
ACCCCGGATTGTAAAATTACCAAAAT
Found at i:67984494 original size:80 final size:81
Alignment explanation
Indices: 67984383--67984569 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 81
67984373 TAAAACCCCG
* * * * *
67984383 ATTTGTAAAATTACCGAAATACTCCC-GGGTTGTAAAATTATCAAGATACC-CATGATTT-TAAA
1 ATTTGTAAAATTACTGAAATAC-CCCTAGGTTGTAAAATTACCAAAATACCTC-TAATTTGTAAA
* *
67984445 ATTACCAAAATACCATCGA
64 ATTACCAAAATACC-CCAA
*
67984464 A-TTGTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACCAAAATACCTCTAATTTGTGAAAT
1 ATTTGTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACCAAAATACCTCTAATTTGTAAAAT
*
67984528 TACTAAAATACCCCAA
66 TACCAAAATACCCCAA
*
67984544 ATTTGTAAAATTATTGAAATACCCCT
1 ATTTGTAAAATTACTGAAATACCCCT
67984570 TGATTTGTAA
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
79 3 0.03
80 48 0.52
81 41 0.45
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (81 bp):
ATTTGTAAAATTACTGAAATACCCCTAGGTTGTAAAATTACCAAAATACCTCTAATTTGTAAAAT
TACCAAAATACCCCAA
Found at i:67984511 original size:54 final size:53
Alignment explanation
Indices: 67984385--67984556 Score: 170
Period size: 54 Copynumber: 3.2 Consensus size: 53
67984375 AAACCCCGAT
* * ** * *
67984385 TTGTAAAATTACCGAAATACTCCCGGGTTGTAAAATTA-TCAAGATACCCAT-GA
1 TTGTAAAATTACCAAAATAC-CTCGAATTGTAAAATTACT-AAAATACCCCTAGA
* * *
67984438 TTTTAAAATTACCAAAATACCATCGAATTGTAAAATTACTGAAATACCCCTAGG
1 TTGTAAAATTACCAAAATACC-TCGAATTGTAAAATTACTAAAATACCCCTAGA
* * *
67984492 TTGTAAAATTACCAAAATACCTCTAATTTGTGAAATTACTAAAATACCCC-AAA
1 TTGTAAAATTACCAAAATACCTCGAA-TTGTAAAATTACTAAAATACCCCTAGA
67984545 TTTGTAAAATTA
1 -TTGTAAAATTA
67984557 TTGAAATACC
Statistics
Matches: 99, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
53 44 0.44
54 54 0.55
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCTCGAATTGTAAAATTACTAAAATACCCCTAGA
Found at i:67984563 original size:27 final size:27
Alignment explanation
Indices: 67984412--67984582 Score: 150
Period size: 27 Copynumber: 6.3 Consensus size: 27
67984402 TACTCCCGGG
* * *
67984412 TTGTAAAATTA-TCAAGATACCCATGAT
1 TTGTAAAATTACT-AAAATACCCCTAAT
* * *
67984439 TT-TAAAATTACCAAAATACCATCGAA-
1 TTGTAAAATTACTAAAATACC-CCTAAT
* **
67984465 TTGTAAAATTACTGAAATACCCCTAGG
1 TTGTAAAATTACTAAAATACCCCTAAT
* *
67984492 TTGTAAAATTACCAAAATACCTCTAAT
1 TTGTAAAATTACTAAAATACCCCTAAT
* *
67984519 TTGTGAAATTACTAAAATACCCCAAAT
1 TTGTAAAATTACTAAAATACCCCTAAT
* * *
67984546 TTGTAAAATTATTGAAATACCCCTTGAT
1 TTGTAAAATTACTAAAATACCCC-TAAT
67984574 TTGTAAAAT
1 TTGTAAAAT
67984583 GACCGTAATA
Statistics
Matches: 114, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
26 19 0.17
27 84 0.74
28 11 0.10
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTAAAATACCCCTAAT
Found at i:67984592 original size:28 final size:27
Alignment explanation
Indices: 67984576--67984663 Score: 131
Period size: 27 Copynumber: 3.3 Consensus size: 27
67984566 CCCTTGATTT
67984576 GTAAAATGACCGTAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTGTAAG
* * *
67984603 GTAAAATAACCGTAATATCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAAG
* *
67984630 GTAAAATGACCGTAATACCCTTGTATG
1 GTAAAATGACCGTAATACCCCTGTAAG
67984657 GTAAAAT
1 GTAAAAT
67984664 AATGATTATG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAAG
Found at i:67984869 original size:27 final size:26
Alignment explanation
Indices: 67984829--67984884 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
67984819 TGTGACATTC
* * *
67984829 ACTGTTACTGGTGGCTATGGCACAATT
1 ACTGATACTAGTGGCT-TGCCACAATT
*
67984856 ACTGATACTAGTGGCTTGCCACATTT
1 ACTGATACTAGTGGCTTGCCACAATT
67984882 ACT
1 ACT
67984885 ATTTCTGGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
ACTGATACTAGTGGCTTGCCACAATT
Found at i:67985159 original size:33 final size:33
Alignment explanation
Indices: 67985074--67985164 Score: 119
Period size: 33 Copynumber: 2.8 Consensus size: 33
67985064 CCCACACCGT
* * *
67985074 TACTGTATAGGGCTAAAGCCTAGACTGTTCTGT
1 TACTGTATAGGGCTAAGGCCTAGACTGTACTGA
*
67985107 TACTGTATATGGCTAAGGCCTAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCTAGACTGTACTGA
* * *
67985140 TACTGGATAGGGCTCAGGCCCAGAC
1 TACTGTATAGGGCTAAGGCCTAGAC
67985165 AGTTACTGCA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCTAGACTGTACTGA
Found at i:67986284 original size:24 final size:24
Alignment explanation
Indices: 67986232--67986399 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
67986222 GCTTTATCAT
*
67986232 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
67986257 ATAACTGGGGCAAAAGCCATTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
67986281 ATAACTGGGGCATAAACCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67986305 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
67986329 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
67986353 ATAATTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
67986377 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67986400 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
24 115 0.91
25 12 0.09
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67986473 original size:20 final size:20
Alignment explanation
Indices: 67986448--67986514 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
67986438 TTATGAATAC
*
67986448 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
67986468 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67986488 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67986508 ACCATGT
1 ATCATGT
67986515 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67993143 original size:27 final size:27
Alignment explanation
Indices: 67993113--67993222 Score: 89
Period size: 27 Copynumber: 4.1 Consensus size: 27
67993103 GTCGTTAAGG
67993113 CCCTGATTTGTAAAATTACCAAAATAC
1 CCCTGATTTGTAAAATTACCAAAATAC
* * **
67993140 CCCT-AGGTTATAAAATTACTGAAATAC
1 CCCTGA-TTTGTAAAATTACCAAAATAC
* * *
67993167 CCTTAATTTGTGAAATTACCAAAAT-C
1 CCCTGATTTGTAAAATTACCAAAATAC
* * * **
67993193 CCCCGATATGAAAAATTACTGAAATAC
1 CCCTGATTTGTAAAATTACCAAAATAC
67993220 CCC
1 CCC
67993223 CTCCCCCGAT
Statistics
Matches: 62, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
26 19 0.31
27 42 0.68
28 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
CCCTGATTTGTAAAATTACCAAAATAC
Found at i:67993319 original size:27 final size:26
Alignment explanation
Indices: 67993289--67993373 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
67993279 TCCCCAGTTT
67993289 GTAAAATGACCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCC-TGTAGG
* *
67993316 GTAAAATAACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAAT-ACCCTGTAGG
* * *
67993343 AT-AAATGATCGTAATACGCCTGTATG
1 GTAAAATGACCGTAATAC-CCTGTAGG
67993369 GTAAA
1 GTAAA
67993374 TTTACGATTA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.02
26 19 0.40
27 24 0.51
28 3 0.06
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (26 bp):
GTAAAATGACCGTAATACCCTGTAGG
Found at i:67993355 original size:26 final size:25
Alignment explanation
Indices: 67993292--67993374 Score: 85
Period size: 26 Copynumber: 3.2 Consensus size: 25
67993282 CCAGTTTGTA
*
67993292 AAATGACCGTAATACCCTTGTAGGGT
1 AAATGACCGTAATACCCCTGTA-GGT
* *
67993318 AAAATAACCGTAATGCCCCTGTAGGAT
1 -AAATGACCGTAATACCCCTGTAGG-T
* *
67993345 AAATGATCGTAATACGCCTGTATGGT
1 AAATGACCGTAATACCCCTGTA-GGT
67993371 AAAT
1 AAAT
67993375 TTACGATTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 25 0.53
27 22 0.47
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (25 bp):
AAATGACCGTAATACCCCTGTAGGT
Found at i:67993558 original size:27 final size:26
Alignment explanation
Indices: 67993514--67993620 Score: 101
Period size: 27 Copynumber: 4.1 Consensus size: 26
67993504 ATGGAGGAAG
* *
67993514 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
*
67993539 TCACTGTTGCTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* *
67993567 TACTGATATTGGTGGCT-TGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
* * *
67993593 TACTGTTCCTGGTAGCTATGCTACAT
1 TACTGTTACTGGTGGCTATGCCACAT
67993619 TA
1 TA
67993621 TTATTACCGG
Statistics
Matches: 66, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
25 2 0.03
26 27 0.41
27 34 0.52
28 3 0.05
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:67996774 original size:41 final size:43
Alignment explanation
Indices: 67996666--67996815 Score: 137
Period size: 41 Copynumber: 3.5 Consensus size: 43
67996656 ATATTGTTCT
* * * * *
67996666 CATGTAAGACTACGTCTGGTAC-GTTAGCATTGATATATGTAGTTA
1 CATGTAAGACCATGTCTGGGACAG-TAGCATCGATATGTG-A-TTA
* *
67996711 CATGTAAGACCATGTCTAGGACA-TCAGCATC-ATATTTGATT-
1 CATGTAAGACCATGTCTGGGACAGT-AGCATCGATATGTGATTA
* * * *
67996752 CGTGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTA
1 CATGTAAGACCATGTCTGGGACAGTAGCATCGATATGTGATTA
67996795 CATGTAAGACCATGTCTGGGA
1 CATGTAAGACCATGTCTGGGA
67996816 TGTTTGTAAC
Statistics
Matches: 85, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
41 24 0.28
42 12 0.14
43 19 0.22
44 7 0.08
45 23 0.27
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGTAGCATCGATATGTGATTA
Found at i:67997632 original size:31 final size:31
Alignment explanation
Indices: 67997590--67997672 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 31
67997580 CAGTCTCGAT
* *
67997590 ATAT-ACTGGGCCAAAGCCTTTTTATAAATC
1 ATATCACTGGGCCGAAGCCTTTTCATAAATC
67997620 ATATCACTGGGCCGAAGCCTTTTCATAAATC
1 ATATCACTGGGCCGAAGCCTTTTCATAAATC
*
67997651 ATATCATTGGGCCGAAGCCTTT
1 ATATCACTGGGCCGAAGCCTTT
67997673 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (31 bp):
ATATCACTGGGCCGAAGCCTTTTCATAAATC
Found at i:67997961 original size:26 final size:26
Alignment explanation
Indices: 67997890--67998064 Score: 264
Period size: 26 Copynumber: 6.8 Consensus size: 26
67997880 CCTCTTTAAT
**
67997890 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
67997915 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
67997940 AACTAGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
67997966 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
67997992 AACTGAGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
67998018 AACTGGGGCATAAGCCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
67998044 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
67998065 GCACTTCCTC
Statistics
Matches: 135, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 32 0.24
26 103 0.76
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:67998139 original size:20 final size:20
Alignment explanation
Indices: 67998114--67998200 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
67998104 TTATGAATAC
*
67998114 ATCATGTACATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
67998134 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
67998154 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
67998174 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
67998194 ATCATGT
1 ATCATGT
67998201 ATATCATATC
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.41
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:67998998 original size:27 final size:27
Alignment explanation
Indices: 67998907--67998990 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
67998897 GGGCATATTC
* *
67998907 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
67998934 GTCACTTCACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
67998961 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
67998988 GTC
1 GTC
67998991 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:67999082 original size:27 final size:27
Alignment explanation
Indices: 67999029--67999388 Score: 255
Period size: 27 Copynumber: 13.3 Consensus size: 27
67999019 TTTCATCCTA
** * * * *
67999029 CAAGGGTGCTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
67999056 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
67999083 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-T
*
67999112 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
* *
67999139 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
67999166 TAAGGGTATTTCGGTAATTTCATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
67999193 CAATGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
67999219 CTAAGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
** *
67999247 TGAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * * *
67999273 CTAGGGGTATTTTAGCAATTTTACAGA-
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* *
67999300 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
* * *
67999327 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
67999354 CAAGGGTATTCTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
67999381 CGAGGGTA
1 CAAGGGTA
67999389 AAACAGTAAT
Statistics
Matches: 268, Mismatches: 55, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
26 22 0.08
27 217 0.81
28 14 0.05
29 15 0.06
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:67999201 original size:54 final size:54
Alignment explanation
Indices: 67999029--67999374 Score: 291
Period size: 54 Copynumber: 6.4 Consensus size: 54
67999019 TTTCATCCTA
** * * * *
67999029 CAAGGGTGCTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTATAAAC
* * * * * * *
67999083 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTTCGGTAATTTTATAAAC
* ** *
67999139 CAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTATAAAC
* * * * *
67999193 CAATGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTATAAAC
** * * ** * * *
67999247 TGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTATAAAC
* ** * * * *
67999300 CTAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTATAAAC
* *
67999354 CAAGGGTATTCTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
67999375 GTAAATCGAG
Statistics
Matches: 238, Mismatches: 49, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
53 40 0.17
54 145 0.61
55 16 0.07
56 37 0.16
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTATAAAC
Found at i:67999232 original size:81 final size:80
Alignment explanation
Indices: 67999112--67999374 Score: 323
Period size: 81 Copynumber: 3.3 Consensus size: 80
67999102 TTTAGAAAGT
** *
67999112 CAAGGGTATTTCT-GTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTAAGGGTAT
1 CAAGGGTATTT-TAGTAATTTTACAAACT-A-GGGTATTTTGGTAATTTTACAAATTGAGGGTAT
* *
67999175 TTCGGTAATTTCATAAAC
63 TTTGGTAATTTTATAAAC
* *
67999193 CAATGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACT-AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
*
67999258 TGGTAATTTTACAAAC
65 TGGTAATTTTATAAAC
* * * * ** *
67999274 TAGGGGTATTTTAGCAATTTTACAGACTAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTT
*
67999339 GGTAATTTTGTAAAC
66 GGTAATTTTATAAAC
*
67999354 CAAGGGTATTCTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
67999375 GTAAATCGAG
Statistics
Matches: 157, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 65 0.41
81 90 0.57
82 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (80 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTT
GGTAATTTTATAAAC
Found at i:67999383 original size:54 final size:54
Alignment explanation
Indices: 67999058--67999509 Score: 245
Period size: 54 Copynumber: 8.4 Consensus size: 54
67999048 CTACAAACCA
* * * * * *
67999058 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCA
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGTA-TTCTGGTAA-TTTTATAAA-TCG
* * * **
67999114 AGGGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTA
1 AGGGTATTT-TAGTAATTTTGTAAATCAAGGGTATTCTGGTAATTTTATAAATCG
** ** * * * * *
67999168 AGGGTATTTCGGTAATTTCATAAACCAATGGTATTTTGGTAATTTTACAAA-CTA
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGTATTCTGGTAATTTTATAAATC-G
* ** ** * * *
67999222 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGTATTCTGGTAATTTTATAAATCG
* ** * * * *
67999275 AGGGGTATTTTAGCAATTTTACAGA-CTAGGGTATTTTGGTAATTTTACT-GATCG
1 A-GGGTATTTTAGTAATTTTGTAAATCAAGGGTATTCTGGTAATTTTA-TAAATCG
* * * *
67999329 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTCTAGTAATTTTGTAAATCG
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGTATTCTGGTAATTTTATAAATCG
**** * ** * *
67999383 AGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC-AGTAATTCTATAAATCG
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGT-ATTCTGGTAATTTTATAAATCG
***** * ** *
67999437 AGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACT-GTAATTCTATAAATCG
1 AGGGTATTTTAGTAATTTTGTAAATCAAGGGT-ATTCTGGTAATTTTATAAATCG
*
67999491 AGGGTACTTTAGTAATTTT
1 AGGGTATTTTAGTAATTTT
67999510 ACAATTTGAG
Statistics
Matches: 326, Mismatches: 59, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
53 41 0.13
54 241 0.74
55 13 0.04
56 31 0.10
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTGTAAATCAAGGGTATTCTGGTAATTTTATAAATCG
Found at i:67999396 original size:27 final size:27
Alignment explanation
Indices: 67999340--67999496 Score: 190
Period size: 27 Copynumber: 5.8 Consensus size: 27
67999330 GGGTATTTTG
* * **
67999340 GTAATTTTGTAAACCAAGGGT-ATTCTA
1 GTAATTCTGTAAATCAAGGGTAAAAC-A
* *
67999367 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACA
67999394 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACA
* * *
67999421 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACA
*
67999448 GTAATTCTGTAAATCAAGGGTAAAACT
1 GTAATTCTGTAAATCAAGGGTAAAACA
* *
67999475 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTA
67999497 CTTTAGTAAT
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
27 113 0.98
28 2 0.02
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACA
Found at i:68003897 original size:46 final size:46
Alignment explanation
Indices: 68003844--68004019 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68003834 TATTTGGGCA
68003844 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68003890 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
68003937 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
68003983 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68004020 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68003999 original size:93 final size:93
Alignment explanation
Indices: 68003840--68004011 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68003830 GGGATATTTG
* *
68003840 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68003905 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68003933 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68003998 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68004012 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68006992 original size:15 final size:15
Alignment explanation
Indices: 68006972--68007040 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
68006962 GTATCTTGGG
68006972 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
68006987 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
68007002 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
68007017 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
68007032 TTTCTTTAT
1 TTTCTTTAT
68007041 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:68007041 original size:30 final size:30
Alignment explanation
Indices: 68006963--68007050 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
68006953 CATAGTATCG
* * * *
68006963 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
68006993 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
68007023 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
68007051 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:68009487 original size:46 final size:46
Alignment explanation
Indices: 68009434--68009609 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68009424 TATTTGGGCA
68009434 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68009480 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
68009527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
68009573 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68009610 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68009589 original size:93 final size:93
Alignment explanation
Indices: 68009430--68009601 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68009420 GGGATATTTG
* *
68009430 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68009495 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68009523 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68009588 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68009602 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68014437 original size:46 final size:46
Alignment explanation
Indices: 68014269--68014438 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
68014259 GGTTGAGCAT
*
68014269 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * * * *
68014314 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCGAACGC
68014358 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
68014406 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68014439 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 31 0.30
46 63 0.61
47 2 0.02
48 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:68014700 original size:19 final size:20
Alignment explanation
Indices: 68014663--68014700 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68014653 ATAAGGTGGT
68014663 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
68014683 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
68014701 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:68022297 original size:40 final size:39
Alignment explanation
Indices: 68022252--68022416 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 39
68022242 CGGAATATAA
68022252 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
68022292 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68022330 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
68022370 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
68022409 CCGGATAT
1 CCGGATAT
68022417 CATTCAATTT
Statistics
Matches: 103, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
38 32 0.31
39 13 0.13
40 56 0.54
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:68031031 original size:30 final size:30
Alignment explanation
Indices: 68030995--68031125 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
68030985 GACAAGATTG
* * * * *
68030995 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
68031025 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
68031053 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
68031083 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
68031112 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68031126 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:68031086 original size:58 final size:58
Alignment explanation
Indices: 68030995--68031125 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
68030985 GACAAGATTG
* * * * * *
68030995 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
68031053 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
68031112 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68031126 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:68038468 original size:46 final size:46
Alignment explanation
Indices: 68038413--68038593 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
68038403 TAGGATGGTT
68038413 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
68038459 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
68038505 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** * *
68038552 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68038594 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:68038574 original size:93 final size:93
Alignment explanation
Indices: 68038415--68038586 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68038405 GGATGGTTGA
* *
68038415 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68038480 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68038508 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68038573 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68038587 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68043262 original size:17 final size:17
Alignment explanation
Indices: 68043240--68043277 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
68043230 TGTGTGCTAA
68043240 GCTGTGTCCCTCACACG
1 GCTGTGTCCCTCACACG
68043257 GCTGTGTCCCTCACACG
1 GCTGTGTCCCTCACACG
68043274 GCTG
1 GCTG
68043278 AGACACACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.39, G:0.26, T:0.24
Consensus pattern (17 bp):
GCTGTGTCCCTCACACG
Found at i:68044735 original size:2 final size:2
Alignment explanation
Indices: 68044728--68044755 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
68044718 GCTCTTGCAC
68044728 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68044756 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68046178 original size:51 final size:50
Alignment explanation
Indices: 68046083--68046525 Score: 556
Period size: 51 Copynumber: 9.1 Consensus size: 50
68046073 TTAGGATTTT
* **
68046083 AATGTGATGAATGTGAACATG-CGTAT-T-TGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACCTGATATATATGTGTGATAAGGCCGAATGGCC
68046130 AATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACCTG-ATATATATGTGTGATAAGGCCGAATGGCC
* * *
68046181 AATGTGATGAATGTGAACCTGTATATATATGCGTTATAAGGCCGAATAGCC
1 AATGTGATGAATGTGAACCTG-ATATATATGTGTGATAAGGCCGAATGGCC
*
68046232 AATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACCTG-ATATATATGTGTGATAAGGCCGAATGGCC
***
68046283 AATGTGATGAATGTGAA-C--ATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACCTGATATATATGTGTGATAAGGCCGAATGGCC
* *
68046330 AATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCTGAATGGCC
1 AATGTGATGAATGTGAACCTG-ATATATATGTGTGATAAGGCCGAATGGCC
***
68046381 AATGTGATGAATGTGAA-C--ATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACCTGATATATATGTGTGATAAGGCCGAATGGCC
* * *
68046428 AATGTGATGAATGTGAACATG-CATATA--TGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACCTGATATATATGTGTGATAAGGCCGAATGGCC
* * *
68046475 AATGTGAGGAATGTGAACATG-TATATATGTG-G-TAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACCTGATATATATGTGTGATAAGGCCGAATGGCC
68046522 AATG
1 AATG
68046526 CGAAATGTGT
Statistics
Matches: 352, Mismatches: 31, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
47 165 0.47
48 2 0.01
49 7 0.02
50 3 0.01
51 175 0.50
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (50 bp):
AATGTGATGAATGTGAACCTGATATATATGTGTGATAAGGCCGAATGGCC
Found at i:68046192 original size:98 final size:98
Alignment explanation
Indices: 68046083--68046525 Score: 660
Period size: 98 Copynumber: 4.5 Consensus size: 98
68046073 TTAGGATTTT
*
68046083 AATGTGATGAATGTGAACATGCGTATTTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
*
68046148 CTGTATATATATGTGTGATAAGGCCGAATGGCC
66 CTGTATATATATGCGTGATAAGGCCGAATGGCC
*** * * *
68046181 AATGTGATGAATGTGAACCTGTATATATATGCGTTATAAGGCCGAATAGCCAATGTGATGAATGT
1 AATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
68046246 GAACCTGTATATATATGCGTGATAAGGCCGAATGGCC
62 GAACCTGTATATATATGCGTGATAAGGCCGAATGGCC
68046283 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
*
68046348 CTGTATATATATGCGTGATAAGGCTGAATGGCC
66 CTGTATATATATGCGTGATAAGGCCGAATGGCC
68046381 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* * *
68046446 ATG--CATATAT--GAGATAAGGCCGAATGGCC
66 CTGTATATATATGCGTGATAAGGCCGAATGGCC
* ** * * *
68046475 AATGTGAGGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
68046526 CGAAATGTGT
Statistics
Matches: 316, Mismatches: 25, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
94 62 0.20
96 6 0.02
98 157 0.50
99 1 0.00
101 1 0.00
102 89 0.28
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (98 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
CTGTATATATATGCGTGATAAGGCCGAATGGCC
Found at i:68046565 original size:46 final size:46
Alignment explanation
Indices: 68046499--68046589 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
68046489 GAACATGTAT
* * *
68046499 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
68046545 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
68046590 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.33, C:0.08, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:68046915 original size:37 final size:37
Alignment explanation
Indices: 68046733--68046914 Score: 319
Period size: 37 Copynumber: 4.9 Consensus size: 37
68046723 GGAAATATAT
68046733 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
68046770 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
68046807 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
68046844 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
68046881 TCGGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
68046915 TCGTCTGAGC
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:68048237 original size:40 final size:40
Alignment explanation
Indices: 68048182--68048453 Score: 402
Period size: 40 Copynumber: 6.8 Consensus size: 40
68048172 GAGAATTGAG
68048182 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
68048222 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
68048262 AGTGATGTATCCGGACTAAGTCCTGAAGAGCATTCGTGCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
68048302 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
68048342 AGTGATGTATCTGGGCTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
68048382 AGTGATATATCCGTGCTAA-ACCACGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
* *
68048422 AGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
68048454 ATCATGCTGG
Statistics
Matches: 210, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
39 1 0.00
40 207 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:68052043 original size:40 final size:40
Alignment explanation
Indices: 68051958--68052108 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
68051948 AATTGAATGA
* * * *
68051958 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
68051998 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
68052039 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
68052078 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
68052109 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:68052122 original size:40 final size:40
Alignment explanation
Indices: 68051995--68052124 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
68051985 ATGCTGGAAA
* * *
68051995 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
68052035 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
68052075 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
68052115 TTATATCCGG
1 TTATATCCGG
68052125 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:68052123 original size:80 final size:80
Alignment explanation
Indices: 68051957--68052124 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
68051947 AAATTGAATG
* *
68051957 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
68052022 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
68052037 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
68052100 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
68052117 ATATCCGG
1 ATATCCGG
68052125 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:68055445 original size:47 final size:47
Alignment explanation
Indices: 68055392--68055830 Score: 574
Period size: 47 Copynumber: 9.1 Consensus size: 47
68055382 TTAGGATTTT
*
68055392 AATGTGATGAATGTGAACATGCGCATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*** *
68055439 AATGTGATGAATGTGAACCTGTATATATATGTGTGAGAAGGCC-AATTGGCC
1 AATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAA-TGGCC
68055490 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*** *
68055537 AATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCC
*
68055588 AATGTGATGAATGTGAACATGCGTGTGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
** * *
68055635 AATGTGATGAATGTGAACATGTATATATATGCGTGATAAGGCTGAATGGCC
1 AATGTGATGAATGTGAACATG----CGTATGTGTGATAAGGCCGAATGGCC
*
68055686 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
68055733 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
** * * *
68055780 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
68055827 AATG
1 AATG
68055831 CGAAATGTGT
Statistics
Matches: 344, Mismatches: 34, Indels: 28
0.85 0.08 0.07
Matches are distributed among these distances:
47 214 0.62
48 4 0.01
50 4 0.01
51 122 0.35
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
Found at i:68055501 original size:98 final size:98
Alignment explanation
Indices: 68055392--68055830 Score: 690
Period size: 98 Copynumber: 4.5 Consensus size: 98
68055382 TTAGGATTTT
*
68055392 AATGTGATGAATGTGAACATGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* *
68055457 CTGTATATATATGTGTGAGAAGGCC-AATTGGCC
66 CTGTATATATATGCGTGATAAGGCCGAA-TGGCC
68055490 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
68055555 CTGTATATATATGCGTGATAAGGCCGAATGGCC
66 CTGTATATATATGCGTGATAAGGCCGAATGGCC
*
68055588 AATGTGATGAATGTGAACATGCGTGTGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* *
68055653 ATGTATATATATGCGTGATAAGGCTGAATGGCC
66 CTGTATATATATGCGTGATAAGGCCGAATGGCC
*
68055686 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAA-
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
*** *
68055750 C---ATGCGTATGTGTGATAAGGCCGAATGGCC
66 CTGTATATATATGCGTGATAAGGCCGAATGGCC
** * * *
68055780 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
68055831 CGAAATGTGT
Statistics
Matches: 320, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 69 0.22
98 249 0.78
99 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (98 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
CTGTATATATATGCGTGATAAGGCCGAATGGCC
Found at i:68055717 original size:25 final size:25
Alignment explanation
Indices: 68055688--68055765 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
68055678 GAATGGCCAA
68055688 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* ** * *
68055713 TGTGAT-AAGGCCAA-ATG-GCCA-A
1 TGTGATGAATGTGAACATGCG-TATG
68055735 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
68055760 TGTGAT
1 TGTGAT
68055766 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 7 0.18
23 9 0.24
24 9 0.24
25 13 0.34
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:68055870 original size:46 final size:46
Alignment explanation
Indices: 68055804--68055894 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
68055794 GAACATGTAT
* * *
68055804 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
68055850 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
68055895 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.33, C:0.08, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:68056224 original size:37 final size:37
Alignment explanation
Indices: 68056042--68056223 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
68056032 GGAAATATAT
68056042 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68056079 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
68056116 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
68056153 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
68056190 TTCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
68056224 TCGTCTGAGC
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:68057579 original size:46 final size:44
Alignment explanation
Indices: 68057468--68057580 Score: 106
Period size: 46 Copynumber: 2.5 Consensus size: 44
68057458 GTGCTGATGC
* * *
68057468 CATGTCCCAGACATGGTCTTACACTGACACATTTCATAGCCGATG
1 CATGTCCCAGACA-CGTCTTACACCGACACATTTCATAGCCAATG
* * *
68057513 CAT-TCCCAGACATG-CGTTACACCGACTTACATCTTGA-GGCCAATG
1 CATGTCCCAGACACGTC-TTACACCGAC--ACAT-TTCATAGCCAATG
68057558 CATGTCCCAGACACGTCTTACAC
1 CATGTCCCAGACACGTCTTACAC
68057581 TGGTACTCGT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
42 1 0.02
43 10 0.18
44 9 0.16
45 16 0.29
46 19 0.34
47 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (44 bp):
CATGTCCCAGACACGTCTTACACCGACACATTTCATAGCCAATG
Found at i:68060987 original size:11 final size:11
Alignment explanation
Indices: 68060971--68060995 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
68060961 AAAATTGTAA
68060971 AAACTAATATT
1 AAACTAATATT
68060982 AAACTAATATT
1 AAACTAATATT
68060993 AAA
1 AAA
68060996 GGAAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:68068480 original size:37 final size:37
Alignment explanation
Indices: 68068419--68068596 Score: 275
Period size: 37 Copynumber: 4.8 Consensus size: 37
68068409 TCAGACGAAG
* *
68068419 TCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
68068456 TCTCCACACGTAGTCATCGAGTCTTACCCAGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
68068493 TCTACACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
68068530 TCTCCACACGTAGTCATCAGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
68068567 TCTCCATACGTAGTCATCGGGTCTTACCCG
1 TCTCCACACGTAGTCATCGGGTCTTACCCG
68068597 AAATATATTT
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 129 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:68068873 original size:48 final size:48
Alignment explanation
Indices: 68068744--68069021 Score: 284
Period size: 48 Copynumber: 5.8 Consensus size: 48
68068734 ACACATCGCC
* *
68068744 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
68068794 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATCTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
68068842 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
68068890 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * * * *
68068938 T--AT-TCACCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC-
1 TACATATC-TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCA
* * *
68068984 -ACAT-TCATCACATTGGCCATTCGGCCTTATCACATATA
1 TACATATC-TCACATTAGCCATTCGGCTTTACCACATATA
68069022 TGCATGTTCA
Statistics
Matches: 199, Mismatches: 22, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
45 8 0.04
46 20 0.10
47 30 0.15
48 98 0.49
49 2 0.01
50 41 0.21
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (48 bp):
TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:68069017 original size:22 final size:22
Alignment explanation
Indices: 68068990--68069061 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
68068980 GCTCACATTC
68068990 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
68069012 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
68069036 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
68069059 ATC
1 ATC
68069062 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:68069067 original size:47 final size:47
Alignment explanation
Indices: 68068899--68069090 Score: 235
Period size: 47 Copynumber: 4.1 Consensus size: 47
68068889 ATACATATTT
* * * * * *
68068899 CACATTAGCCATTCGACTTTACCACATATA--CATATCTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCACATTCAC
* * *
68068945 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
*
68068992 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* * **
68069039 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
68069086 CACAT
1 CACAT
68069091 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
46 25 0.20
47 100 0.78
48 3 0.02
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
Found at i:68069080 original size:94 final size:93
Alignment explanation
Indices: 68068821--68069090 Score: 244
Period size: 94 Copynumber: 2.9 Consensus size: 93
68068811 CCATTCAGCT
* * * *
68068821 TTACCACATATGCATATCTCATACATATC-TCACATTAGCCATTCGGCTTTA-C-CACATATACA
1 TTACCACATATACATATCTC--ACAT-TCACCACATTGGCCATTCGGCCTTATCACACATATACA
* * *
68068883 TACCTCATACATAT-TTCACATTAGCCATTCGACT
63 CA-CTC--ACAT-TCATCACATTAGCCATTCGACC
* * **
68068917 TTACCACATATACATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGC
1 TTACCACATATACATATCTCACATTCACCACATTGGCCATTCGGCCTTATCACACATATACACAC
* *
68068982 TCACATTCATCACATTGGCCATTCGGCC
66 TCACATTCATCACATTAGCCATTCGACC
* * * * *
68069010 TTATCACATATATGCATGT-TCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACAC
1 TTACCACATATA--CATATCTCACATTCACCACATTGGCCATTCGGCCTTATCACACATATACAC
* *
68069074 ATTCACATTCACCACAT
64 ACTCACATTCATCACAT
68069091 AAAATCCTAA
Statistics
Matches: 146, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
92 1 0.01
93 33 0.23
94 75 0.51
95 8 0.05
96 29 0.20
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (93 bp):
TTACCACATATACATATCTCACATTCACCACATTGGCCATTCGGCCTTATCACACATATACACAC
TCACATTCATCACATTAGCCATTCGACC
Found at i:68073231 original size:40 final size:40
Alignment explanation
Indices: 68073187--68073457 Score: 463
Period size: 40 Copynumber: 6.8 Consensus size: 40
68073177 CCAGCATGAT
* *
68073187 TGCTCTTCGGGACCTAGCCCGGATATAACACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
68073227 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
68073267 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
68073307 TGCTCTTCGGGACTTAGCCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
68073347 TGCTCTT-GGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
68073386 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
68073426 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
68073458 CTCAATTCTC
Statistics
Matches: 220, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 37 0.17
40 183 0.83
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:68073399 original size:119 final size:120
Alignment explanation
Indices: 68073161--68073457 Score: 470
Period size: 119 Copynumber: 2.5 Consensus size: 120
68073151 AGGCACGAAG
* * * * *
68073161 GCCCGAATACACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACTAGCACGA
1 GCCCGAATACA--TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGA
68073226 ATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
64 ATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
* * *
68073283 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGAATACATCACTAGCACGAAT
1 GCCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
* *
68073348 GCTCTT-GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTA
66 GCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
*
68073402 GCCCGAATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 GCCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
68073458 CTCAATTCTC
Statistics
Matches: 161, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 98 0.61
120 53 0.33
122 10 0.06
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (120 bp):
GCCCGAATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
GCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTA
Found at i:68074779 original size:37 final size:37
Alignment explanation
Indices: 68074723--68074863 Score: 221
Period size: 37 Copynumber: 3.8 Consensus size: 37
68074713 TCAGACGAAG
* * * *
68074723 TCTCCACACGAAGTTATCGGGTCTTACCCGAAAAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGAACATAA
*
68074760 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGAACATAA
68074797 TCTCCACACGTAGTCATCGGGTCTTACCC-AGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGA-ACATAA
68074834 TCTCCACACGTAGTCATCGGGTCTTACCCG
1 TCTCCACACGTAGTCATCGGGTCTTACCCG
68074864 GAATATATTT
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGAACATAA
Found at i:68075140 original size:48 final size:48
Alignment explanation
Indices: 68075011--68075254 Score: 391
Period size: 48 Copynumber: 5.0 Consensus size: 48
68075001 GCACATCGCC
* *
68075011 TACATATTTCACACTAGCCATTCGTCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
68075061 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
68075109 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
68075157 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
68075205 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
68075253 TA
1 TA
68075255 TTCACCACAT
Statistics
Matches: 180, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
48 138 0.77
49 2 0.01
50 40 0.22
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:68075288 original size:48 final size:46
Alignment explanation
Indices: 68075069--68075405 Score: 283
Period size: 48 Copynumber: 7.1 Consensus size: 46
68075059 TATATATATT
* * *
68075069 TCACATTGACCATTCAGCTTTACCACATATGCATATCTCATACATATC-
1 TCACATTGGCCATTCGGCTTTACCACATATACATATCTCAT--AT-TCA
* *
68075117 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCTTTACCACATATACATATCTCAT--AT-TCA
*
68075165 TCACATTAGCCATTCGGCTTTACCACATATACATACCTCATACATATT--
1 TCACATTGGCCATTCGGCTTTACCACATATACATA--TC-T-CATATTCA
*
68075213 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATTCA
1 TCACATTGGCCATTCGGCTTTACCACATATACATATCTCATATTCA
* * * * *
68075259 CCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
1 TCACATTGGCCATTCGGCTTTA-C-CACATATACATATCTCATATTCA
* * * * * *
68075306 TCACGTTGGCCATTCGGCCTTATCACATATATGCTTGT-TCACATTCA
1 TCACATTGGCCATTCGGCTTTACCACATATA--CATATCTCATATTCA
* * * *
68075353 TCACATTGGCCATTCGGCCTTATCTCATATATACACAT-TCACATTCA
1 TCACATTGGCCATTCGGCTTTA-C-CACATATACATATCTCATATTCA
68075400 TCACAT
1 TCACAT
68075406 AAAATCCAAA
Statistics
Matches: 253, Mismatches: 22, Indels: 29
0.83 0.07 0.10
Matches are distributed among these distances:
44 6 0.02
45 8 0.03
46 21 0.08
47 79 0.31
48 123 0.49
49 8 0.03
50 4 0.02
51 1 0.00
52 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCTTTACCACATATACATATCTCATATTCA
Found at i:68075288 original size:96 final size:95
Alignment explanation
Indices: 68075011--68075383 Score: 375
Period size: 96 Copynumber: 3.9 Consensus size: 95
68075001 GCACATCGCC
* * *
68075011 TACATATTTCACACTAGCCATTCGTCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT-CA--TCACATT
* * * * *
68075076 GACCATTCAGCTTTACCACATATGCATATCTCA
63 GGCCATTCGGCCTTACCACATATACATACCTCA
* * *
68075109 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-TTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT--ATATCATCACATTG
*
68075173 GCCATTCGGCTTTACCACATATACATACCTCA
64 GCCATTCGGCCTTACCACATATACATACCTCA
*
68075205 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT-TCACCACATTGGC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATCATCACATTGGC
* *
68075269 CATTCGGCCTTATCACACATATGCAT-GCTC-
66 CATTCGGCCTTA-C-CACATATACATACCTCA
* * * * * * * *
68075299 -ACAT-TCATCACGTTGGCCATTCGGCCTTATCACATATATGCTTGT-TCACAT-TCATCACATT
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATA--CATATCTCATATATCATCACATT
* *
68075360 GGCCATTCGGCCTTATCTCATATA
63 GGCCATTCGGCCTTACCACATATA
68075384 TACACATTCA
Statistics
Matches: 239, Mismatches: 28, Indels: 22
0.83 0.10 0.08
Matches are distributed among these distances:
92 7 0.03
93 32 0.13
94 50 0.21
95 7 0.03
96 93 0.39
98 46 0.19
100 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (95 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATCATCACATTGGC
CATTCGGCCTTACCACATATACATACCTCA
Found at i:68075315 original size:47 final size:47
Alignment explanation
Indices: 68075117--68075405 Score: 225
Period size: 47 Copynumber: 6.1 Consensus size: 47
68075107 CATACATATC
* * * *
68075117 TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTATCACACATATACAT-GCTC--ACAT-TCA
* * * *
68075165 TCACATTAGCCATTCGGCTTTA-C-CACATATACATACCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTATCACACATATACAT-GCTC--ACAT-TCA
* * * *
68075213 TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACAT-GCTCACATTCA
* *
68075259 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
* * * * *
68075306 TCACGTTGGCCATTCGGCCTTATCACATATATGCTTGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
* * ***
68075353 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
68075400 TCACAT
1 TCACAT
68075406 AAAATCCAAA
Statistics
Matches: 217, Mismatches: 21, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
45 1 0.00
46 22 0.10
47 99 0.46
48 95 0.44
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
Found at i:68082753 original size:46 final size:46
Alignment explanation
Indices: 68082703--68082875 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
68082693 TGGTTGAGCA
68082703 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68082749 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
68082794 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68082842 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68082876 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.28
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68082859 original size:93 final size:93
Alignment explanation
Indices: 68082700--68082870 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
68082690 GGATGGTTGA
* * *
68082700 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
68082765 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
68082793 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
68082858 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68082871 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Done.