Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 227 of 328
Found at i:68103969 original size:16 final size:16
Alignment explanation
Indices: 68103948--68103982 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
68103938 GTAGCCAAAC
68103948 TTTCGA-CTTTTCGGCA
1 TTTCGACCTTTT-GGCA
68103964 TTTCGACCTTTTGGCA
1 TTTCGACCTTTTGGCA
68103980 TTT
1 TTT
68103983 TGGCTTTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCGACCTTTTGGCA
Found at i:68109402 original size:47 final size:47
Alignment explanation
Indices: 68109312--68109833 Score: 794
Period size: 47 Copynumber: 11.1 Consensus size: 47
68109302 TTAGGATTTT
** * * *
68109312 ATGTGATGAATGTGAATGTGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAA--CATGCATATATGTGATAAGGCCGAATGGCCA
*
68109361 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68109408 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68109455 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68109502 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
68109549 ATGTGATGAATGTGAACATGCATATGTGTCATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68109596 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68109643 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68109690 ATGTGATGAATGTGAACGTGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** *
68109737 ATGTGATGAATGTGAACATGCGTATATGTGATAAGGCAAAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
68109784 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
68109831 ATG
1 ATG
68109834 CGAAATGTGT
Statistics
Matches: 437, Mismatches: 35, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 418 0.96
48 3 0.01
49 16 0.04
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68109461 original size:22 final size:22
Alignment explanation
Indices: 68109390--68109461 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
68109380 GCATATATGA
68109390 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
68109412 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
68109437 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
68109459 GAT
1 GAT
68109462 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:68109649 original size:22 final size:22
Alignment explanation
Indices: 68109621--68109743 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
68109611 ACATGCATAT
*
68109621 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
*
68109643 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCTG-A-ATGGCCA
68109665 TATGTGTGATAAGGCTGAATGGCCA
1 -A--TGTGATAAGGCTGAATGGCCA
* * *
68109690 ATGTGATGAATG-TGAACGTGCATA
1 ATGTGAT-AAGGCTGAATG-GC-CA
*
68109714 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
68109737 ATGTGAT
1 ATGTGAT
68109744 GAATGTGAAC
Statistics
Matches: 77, Mismatches: 10, Indels: 28
0.67 0.09 0.24
Matches are distributed among these distances:
22 28 0.36
23 14 0.18
24 14 0.18
25 21 0.27
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:68109863 original size:46 final size:46
Alignment explanation
Indices: 68109807--68109925 Score: 211
Period size: 46 Copynumber: 2.6 Consensus size: 46
68109797 GGAAGTGTAT
*
68109807 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
68109853 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
68109899 ATATGTGGTAAAGCCAAATGGCTAATG
1 ATATGTGGTAAAGCCGAATGGCTAATG
68109926 TGAGAGATGT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.24
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:68111660 original size:29 final size:28
Alignment explanation
Indices: 68111569--68111679 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 28
68111559 ACATACCTGT
* * * *
68111569 ATATGACCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCATTAGGCCCAATCACATTC
*
68111597 ATATGGCCCATTAGGCCCAATCACATTT
1 ATATGGCCCATTAGGCCCAATCACATTC
*
68111625 ATGTGGCCCATTAGGCCCATATCACATTC
1 ATATGGCCCATTAGGCCCA-ATCACATTC
*
68111654 ATATGG-CCGTTAGGCCCAATCACATT
1 ATATGGCCCATTAGGCCCAATCACATT
68111680 TACAGTCATG
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
27 8 0.11
28 52 0.71
29 13 0.18
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACATTC
Found at i:68111667 original size:56 final size:56
Alignment explanation
Indices: 68111575--68111681 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
68111565 CTGTATATGA
* *
68111575 CCCACTAGGCCCAATCTCTTTCATATGGCCCATTAGGCCCAATCACATTTATGTGG
1 CCCACTAGGCCCAATCACATTCATATGGCCCATTAGGCCCAATCACATTTATGTGG
* *
68111631 CCCATTAGGCCCATATCACATTCATATGG-CCGTTAGGCCCAATCACATTTA
1 CCCACTAGGCCCA-ATCACATTCATATGGCCCATTAGGCCCAATCACATTTA
68111682 CAGTCATGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
56 33 0.72
57 13 0.28
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (56 bp):
CCCACTAGGCCCAATCACATTCATATGGCCCATTAGGCCCAATCACATTTATGTGG
Found at i:68114950 original size:40 final size:40
Alignment explanation
Indices: 68114906--68115013 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 40
68114896 TTCACAATTT
* *
68114906 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68114946 GCACAATTGCCTT-GGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68114985 GCATAAATGTCTTCGGGACTTAG-CCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
68115014 ATCATTCAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
39 38 0.67
40 19 0.33
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:68122798 original size:40 final size:40
Alignment explanation
Indices: 68122754--68122863 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
68122744 TTCACAATTT
* *
68122754 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68122794 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68122834 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
68122864 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:68129317 original size:60 final size:59
Alignment explanation
Indices: 68129200--68129329 Score: 147
Period size: 60 Copynumber: 2.2 Consensus size: 59
68129190 AACTGAGCCT
* *
68129200 TAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATATTGGGCC
* * * *
68129260 TAGCCCATATCAGTGTCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATGTTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATATTGGGCC
*
68129320 TTGCCCATAT
1 TAGCCCATAT
68129330 TAACACAGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
59 4 0.07
60 51 0.85
61 5 0.08
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (59 bp):
TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATATTGGGCC
Found at i:68129347 original size:20 final size:20
Alignment explanation
Indices: 68129322--68129367 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
68129312 GTTGGGCCTT
68129322 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
68129342 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
68129361 GCCCATA
1 GCCCATA
68129368 ACAAAACTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:68131754 original size:18 final size:19
Alignment explanation
Indices: 68131731--68131767 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
68131721 AGGCCTCTTG
*
68131731 GGTA-TTTATTTTTAATTT
1 GGTATTTTACTTTTAATTT
68131749 GGTATTTTACTTTTAATTT
1 GGTATTTTACTTTTAATTT
68131768 TTGGATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.65
Consensus pattern (19 bp):
GGTATTTTACTTTTAATTT
Found at i:68131928 original size:37 final size:37
Alignment explanation
Indices: 68131887--68131961 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
68131877 TTATTTTACA
68131887 AAGTTAATAACATTCTAATAAAAGTAAACTTTAAAAC
1 AAGTTAATAACATTCTAATAAAAGTAAACTTTAAAAC
68131924 AAGTTAATAACATTCTAATAAAAGTAAACTTTAAAAC
1 AAGTTAATAACATTCTAATAAAAGTAAACTTTAAAAC
68131961 A
1 A
68131962 TACAAGTCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (37 bp):
AAGTTAATAACATTCTAATAAAAGTAAACTTTAAAAC
Found at i:68143034 original size:27 final size:26
Alignment explanation
Indices: 68142979--68143094 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 26
68142969 CAGCATTGCT
* * *
68142979 ACCAGAACAGATAATGTGATAGAGTC
1 ACCAGAACAGATATTGTGGTAGAGCC
*
68143005 ACCAGAATAGATACTTGTGGTAGAGCC
1 ACCAGAACAGATA-TTGTGGTAGAGCC
*
68143032 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATAT-TGTGGTAGAGCC
* * * * *
68143059 ACCAGATCAAATAAATGTGGCATAGCC
1 ACCAGAACAGAT-ATTGTGGTAGAGCC
68143086 ACCAGAACA
1 ACCAGAACA
68143095 CTTCCTCCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
26 13 0.17
27 62 0.82
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGTAGAGCC
Found at i:68143078 original size:54 final size:53
Alignment explanation
Indices: 68142979--68143094 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 53
68142969 CAGCATTGCT
* * * ** *
68142979 ACCAGAACAGATAATGTGATAGAGTCACCAGAATAGATACTTGTGGTAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAGAATAAATAAATGTGGCAGAGCC
* *
68143032 ACCAGAACAGATATATGTGGCAGAGCCACCAG-ATCAAATAAATGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAGAAT-AAATAAATGTGGCAGAGCC
68143086 ACCAGAACA
1 ACCAGAACA
68143095 CTTCCTCCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 15 0.28
54 38 0.72
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (53 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAGAATAAATAAATGTGGCAGAGCC
Found at i:68144527 original size:24 final size:24
Alignment explanation
Indices: 68144492--68144592 Score: 175
Period size: 24 Copynumber: 4.2 Consensus size: 24
68144482 CCAAAACTGT
*
68144492 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
68144516 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
68144540 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
68144564 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
68144588 TCTCC
1 TCTCC
68144593 TGACAGACTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.23, C:0.42, G:0.03, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:68146044 original size:68 final size:70
Alignment explanation
Indices: 68145972--68146169 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
68145962 ACACCCTGTA
* * * *
68145972 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
68146034 ATAAAT
65 ATAAAT
*
68146040 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
68146105 ATAAAT
65 ATAAAT
*
68146111 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
68146170 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:68146083 original size:41 final size:41
Alignment explanation
Indices: 68146038--68146155 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
68146028 TGAAAGATAA
68146038 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
68146079 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68146109 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68146150 ATGTAG
1 ATGTAG
68146156 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:68146095 original size:71 final size:71
Alignment explanation
Indices: 68146006--68146169 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68145996 GAGATGTATC
68146006 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68146071 AGGACA
66 AGGACA
68146077 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68146142 AGGACA
66 AGGACA
68146148 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
68146170 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:68153593 original size:68 final size:70
Alignment explanation
Indices: 68153521--68153718 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
68153511 ACACCCTGTA
* * * *
68153521 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
68153583 ATAAAT
65 ATAAAT
*
68153589 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
68153654 ATAAAT
65 ATAAAT
*
68153660 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
68153719 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:68153632 original size:41 final size:41
Alignment explanation
Indices: 68153587--68153704 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
68153577 TGAAAGATAA
68153587 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
68153628 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68153658 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
68153699 ATGTAG
1 ATGTAG
68153705 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:68153644 original size:71 final size:71
Alignment explanation
Indices: 68153555--68153718 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68153545 GAGATGTATC
68153555 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68153620 AGGACA
66 AGGACA
68153626 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68153691 AGGACA
66 AGGACA
68153697 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
68153719 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:68156664 original size:38 final size:38
Alignment explanation
Indices: 68156532--68156697 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 38
68156522 AAATTGAATG
* * * *
68156532 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATT
* *
68156572 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT---T
68156612 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATT
* * *
68156650 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTG--CGAGATT
68156690 ATATCCGG
1 ATATCCGG
68156698 TTATATTCCG
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 28 0.26
39 5 0.05
40 71 0.67
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATT
Found at i:68156672 original size:78 final size:79
Alignment explanation
Indices: 68156532--68156681 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 79
68156522 AAATTGAATG
* *
68156532 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCA
68156597 ATTGTGCTAGTGGCT
65 ATTGTGCTAGTGGCT
* * * *
68156612 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
68156675 TTTGTGC
65 ATTGTGC
68156682 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 34 0.55
79 3 0.05
80 25 0.40
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:68164615 original size:40 final size:40
Alignment explanation
Indices: 68164549--68164715 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
68164539 AAATTGAATG
* * *
68164549 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
68164588 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
68164628 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
68164668 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
68164708 ATATCCGG
1 ATATCCGG
68164716 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:68166897 original size:46 final size:46
Alignment explanation
Indices: 68166734--68166903 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
68166724 GGTTGAGCAT
*
68166734 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
68166779 -TGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
*
68166823 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
68166871 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68166904 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
41 6 0.06
43 4 0.04
44 26 0.25
46 32 0.31
47 26 0.25
48 5 0.05
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:68179173 original size:40 final size:40
Alignment explanation
Indices: 68179088--68179238 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
68179078 AATTGAATGA
* * *
68179088 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
68179128 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
68179169 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
68179208 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
68179239 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:68179252 original size:40 final size:40
Alignment explanation
Indices: 68179125--68179254 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
68179115 ATGCTGGAAA
* * *
68179125 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
68179165 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
68179205 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
68179245 TTATATCCGG
1 TTATATCCGG
68179255 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:68182620 original size:46 final size:46
Alignment explanation
Indices: 68182570--68182742 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
68182560 TGGTTGAGCA
*
68182570 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
68182616 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
68182663 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
68182709 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68182743 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:68182726 original size:93 final size:93
Alignment explanation
Indices: 68182567--68182737 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
68182557 GGATGGTTGA
* *
68182567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68182632 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
68182660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
68182725 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68182738 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68191920 original size:28 final size:27
Alignment explanation
Indices: 68191822--68191933 Score: 100
Period size: 28 Copynumber: 4.0 Consensus size: 27
68191812 ACATACCTAT
* *
68191822 ATATGGCCCACTAGGCCCAATCCCTTTC
1 ATATGG-CCACTAGGCCCAATCACATTC
* *
68191850 ATATGGCC-CATCAGGCCCATTCACATTT
1 ATATGGCCAC-T-AGGCCCAATCACATTC
* * *
68191878 ATGTGTCCCATTAGGCCCAAATCACATTC
1 ATATG-GCCACTAGGCCC-AATCACATTC
68191907 ATATGGCCACTAGGCCCAAATCACATT
1 ATATGGCCACTAGGCCC-AATCACATT
68191934 TACAGTCATG
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
26 1 0.01
27 3 0.04
28 48 0.72
29 15 0.22
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (27 bp):
ATATGGCCACTAGGCCCAATCACATTC
Found at i:68191922 original size:56 final size:57
Alignment explanation
Indices: 68191828--68191935 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 57
68191818 CTATATATGG
* * *
68191828 CCCACTAGGCCCAATCCCTTTCATATGGCCCATCAGGCCC-ATTCACATTTATGTGT
1 CCCACTAGGCCCAATCACATTCATATGGCCCATCAGGCCCAAATCACATTTATGTGT
*
68191884 CCCATTAGGCCCAAATCACATTCATATGG-CCA-CTAGGCCCAAATCACATTTA
1 CCCACTAGGCCC-AATCACATTCATATGGCCCATC-AGGCCCAAATCACATTTA
68191936 CAGTCATGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
55 1 0.02
56 20 0.44
57 24 0.53
ACGTcount: A:0.27, C:0.34, G:0.13, T:0.26
Consensus pattern (57 bp):
CCCACTAGGCCCAATCACATTCATATGGCCCATCAGGCCCAAATCACATTTATGTGT
Found at i:68193442 original size:16 final size:17
Alignment explanation
Indices: 68193411--68193446 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
68193401 AAAAGAAAAA
*
68193411 TTTGAGATTTCGGGATT
1 TTTGAGATTTCAGGATT
68193428 TTTGAG-TTTCAGGATT
1 TTTGAGATTTCAGGATT
68193444 TTT
1 TTT
68193447 AGGGCGTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.17, C:0.06, G:0.25, T:0.53
Consensus pattern (17 bp):
TTTGAGATTTCAGGATT
Found at i:68203406 original size:40 final size:40
Alignment explanation
Indices: 68203369--68203634 Score: 301
Period size: 40 Copynumber: 6.7 Consensus size: 40
68203359 GCTACTCGTT
*
68203369 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
68203409 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
68203449 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
68203489 CGAATGCCTT-TGGATCTTAGTCCGGATTTAGTAAATCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* **
68203529 CAAATGCCTT-TGGATCTTAATCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
68203569 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
68203610 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68203635 CATCATTCGA
Statistics
Matches: 204, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.01
40 189 0.93
41 12 0.06
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:68203481 original size:80 final size:80
Alignment explanation
Indices: 68203369--68203634 Score: 335
Period size: 80 Copynumber: 3.3 Consensus size: 80
68203359 GCTACTCGTT
* * **
68203369 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCTTAGTCC
68203432 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
* *
68203449 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGAATGCCTTTGGATCTTAGTCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCG
*
68203513 GATTTAGTAAATCGCA
65 GATTTAGTAACTCGCA
* **
68203529 CAAATGCCTT-TGGATCTTAATCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCG
* * *
68203593 GATATAGTCACTTAGCA
65 GATTTAGTAAC-TCGCA
68203610 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68203635 CATCATTCGA
Statistics
Matches: 164, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
79 6 0.04
80 145 0.88
81 13 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGG
ATTTAGTAACTCGCA
Found at i:68203628 original size:120 final size:120
Alignment explanation
Indices: 68203369--68203634 Score: 360
Period size: 120 Copynumber: 2.2 Consensus size: 120
68203359 GCTACTCGTT
* *
68203369 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGTAAATCGCACAAATGCCTTCGGGACTTAACCCG
* *
68203433 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
65 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTAGCA
* * * * *
68203489 CGAATGCCTT-TGGATCTTAGTCCGGATT-TAGTAAATCGCACAAATGCCTT-TGGATCTTAATC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTATAGTAAATCGCACAAATGCCTTCGGGA-CTTAACC
* *
68203551 CGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
63 CGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTAAC-TAGCA
68203610 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
68203635 CATCATTCGA
Statistics
Matches: 126, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
119 6 0.05
120 108 0.86
121 12 0.10
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (120 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATAGTAAATCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTAGCA
Found at i:68205696 original size:40 final size:40
Alignment explanation
Indices: 68205622--68205806 Score: 176
Period size: 40 Copynumber: 4.7 Consensus size: 40
68205612 CCGCACCAAG
* * * * * * *
68205622 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * *
68205662 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
** *
68205702 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * * * *
68205742 GTCC-TC-GGACTTAGCCCGGATGTAGCCACTAGCACAATT
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
*
68205781 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
68205807 TTTCCAGCAT
Statistics
Matches: 117, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 84 0.72
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
Found at i:68205784 original size:79 final size:80
Alignment explanation
Indices: 68205666--68205842 Score: 232
Period size: 79 Copynumber: 2.2 Consensus size: 80
68205656 ACAAATGCCT
* * * *
68205666 TCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTA
1 TCGGGACTTAGCCCGGATGTAACAACTAGCACGAATGCCTTCGGGTCTTAACCCGGATATAATTA
* *
68205731 CTAGCATAAATGTCC
66 CCAGCATAAACGTCC
* *
68205746 TC-GGACTTAGCCCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATT
1 TCGGGACTTAGCCCGGATGTAACAACTAGCACGAA-TGCCTTCGGGTCTTAACCCGGATATAATT
* * *
68205809 TCCAGCATTAACGTCT
65 ACCAGCATAAACGTCC
68205825 TCGGGACTTAGCCCGGAT
1 TCGGGACTTAGCCCGGAT
68205843 ATCATTCAAT
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 2 0.02
79 65 0.77
80 17 0.20
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (80 bp):
TCGGGACTTAGCCCGGATGTAACAACTAGCACGAATGCCTTCGGGTCTTAACCCGGATATAATTA
CCAGCATAAACGTCC
Found at i:68207819 original size:2 final size:2
Alignment explanation
Indices: 68207812--68207839 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
68207802 ATGTGCAAAC
68207812 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68207840 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68210856 original size:40 final size:39
Alignment explanation
Indices: 68210799--68210983 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
68210789 ATTAAATGAT
* * *
68210799 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * * *
68210839 ATCCGAGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
68210879 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
68210919 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
68210959 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
68210984 CGTGCATGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 120 0.97
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:68210935 original size:80 final size:80
Alignment explanation
Indices: 68210798--68211004 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
68210788 AATTAAATGA
* * ** * * *
68210798 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGAGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
68210863 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
68210876 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
68210941 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
68210958 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
68211005 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:68210989 original size:40 final size:40
Alignment explanation
Indices: 68210797--68211004 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
68210787 CAATTAAATG
* * ** * *
68210797 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * * *
68210837 AAATCCGAGTTAAGACCCGAAGGCAATT-ATGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
68210877 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
68210917 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
68210957 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
68210997 ATATCCGG
1 ATATCCGG
68211005 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.03
40 135 0.94
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:68212906 original size:29 final size:29
Alignment explanation
Indices: 68212844--68212946 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
68212834 GTGACGAGAT
* * *
68212844 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
68212873 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
68212902 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
68212931 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68212947 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:68219889 original size:29 final size:29
Alignment explanation
Indices: 68219827--68219929 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
68219817 GTGACGAGAT
* * *
68219827 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
68219856 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
68219885 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
68219914 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68219930 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:68222167 original size:43 final size:43
Alignment explanation
Indices: 68222113--68222221 Score: 173
Period size: 43 Copynumber: 2.5 Consensus size: 43
68222103 GCATTACGGT
* *
68222113 TGCTAGGCTCGAAGCCTAATATTAACTCACTGGCATTATAGCC
1 TGCTAGGCTCGAAGCCCAATATTAACTCACCGGCATTATAGCC
*
68222156 TGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAGCC
1 TGCTAGGCTCGAAGCCCAATATTAACTCACCGGCATTATAGCC
68222199 TGCTAGGCTCGAAGGCCCGAATA
1 TGCTAGGCTCGAA-GCCC-AATA
68222222 GTACCGTACG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 53 0.88
44 4 0.07
45 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (43 bp):
TGCTAGGCTCGAAGCCCAATATTAACTCACCGGCATTATAGCC
Found at i:68236158 original size:40 final size:40
Alignment explanation
Indices: 68236114--68236223 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
68236104 TTCACAATTT
* *
68236114 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68236154 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
68236194 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
68236224 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:68238452 original size:10 final size:10
Alignment explanation
Indices: 68238439--68238463 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
68238429 ATACATCAAC
68238439 CAAATCATAA
1 CAAATCATAA
68238449 CAAATCATAA
1 CAAATCATAA
68238459 CAAAT
1 CAAAT
68238464 TTCCAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (10 bp):
CAAATCATAA
Found at i:68239225 original size:42 final size:42
Alignment explanation
Indices: 68239118--68239233 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 42
68239108 CGGAAAGCAT
* * * *
68239118 ATACAATGCCGACGTCCTAGAC-GTGGTCTTACATGTAATCAA
1 ATACAATGCCAATGTCCTAGACAG-GGTCTTACACGAAATCAA
* * * *
68239160 ACATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAA
1 ATA-CAATGCCAATGTCCTAGACAGGGTCTTACACGAAATCAA
*
68239203 ATACAATGCCAATGTCCTAGACATGGTCTTA
1 ATACAATGCCAATGTCCTAGACAGGGTCTTA
68239234 AACACAAAAC
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 26 0.44
43 32 0.54
44 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATACAATGCCAATGTCCTAGACAGGGTCTTACACGAAATCAA
Found at i:68244827 original size:33 final size:33
Alignment explanation
Indices: 68244790--68244878 Score: 142
Period size: 33 Copynumber: 2.7 Consensus size: 33
68244780 CACAGTATCG
*
68244790 GTACAGACTGGGCCAAAGCCCTATTCAGTAACA
1 GTACAGTCTGGGCCAAAGCCCTATTCAGTAACA
*
68244823 GTACAGTCTGGGCCAAAGCCCCATTCAGTAACA
1 GTACAGTCTGGGCCAAAGCCCTATTCAGTAACA
**
68244856 GTACAGTCTGGGCCTTAGCCCTA
1 GTACAGTCTGGGCCAAAGCCCTA
68244879 CACAGCAGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (33 bp):
GTACAGTCTGGGCCAAAGCCCTATTCAGTAACA
Found at i:68249670 original size:39 final size:39
Alignment explanation
Indices: 68249581--68249795 Score: 272
Period size: 39 Copynumber: 5.5 Consensus size: 39
68249571 CAAAGCATGT
* * * *
68249581 GGGACTTTAAGCCTGGATATAATACCCGCAC-AAGGCCTGC
1 GGGAC-TT-AGCCTGGATATAACACCAGCACGAATGCCTTC
* *
68249621 GGGACTTTAGCCCGGATATAACATCAGCACGAATGCCTTC
1 GGGAC-TTAGCCTGGATATAACACCAGCACGAATGCCTTC
* * *
68249661 GGGACTTAGCCCGGATAT-ACACTAGCACAAATGCCTTC
1 GGGACTTAGCCTGGATATAACACCAGCACGAATGCCTTC
* *
68249699 GGGACTTAGCTTGGATATAACACCAGCACGAATGCCTTT
1 GGGACTTAGCCTGGATATAACACCAGCACGAATGCCTTC
*
68249738 GGGACTTGGCCTGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCTGGATATAACACCAGCACGAATGCCTTC
*
68249777 GGGACTTGGCCTGGATATA
1 GGGACTTAGCCTGGATATA
68249796 TTTCTCCATT
Statistics
Matches: 156, Mismatches: 17, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
38 33 0.21
39 103 0.66
40 20 0.13
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (39 bp):
GGGACTTAGCCTGGATATAACACCAGCACGAATGCCTTC
Found at i:68256724 original size:46 final size:46
Alignment explanation
Indices: 68256674--68256849 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68256664 TGGTTGAGCA
68256674 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68256720 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68256765 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68256813 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68256850 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68256830 original size:93 final size:93
Alignment explanation
Indices: 68256671--68256842 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68256661 GGATGGTTGA
* *
68256671 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68256736 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68256764 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68256829 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68256843 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68264300 original size:46 final size:48
Alignment explanation
Indices: 68264249--68264378 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
68264239 ATGGTTGAGC
68264249 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
68264296 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
68264341 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
68264379 CCGAGCTCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:68264392 original size:35 final size:35
Alignment explanation
Indices: 68264344--68264413 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
68264334 AACTAGGCAT
*
68264344 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATG
* *
68264379 CCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATG
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATG
68264414 GGCGGGTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (35 bp):
CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATG
Found at i:68266000 original size:39 final size:39
Alignment explanation
Indices: 68265910--68266126 Score: 294
Period size: 39 Copynumber: 5.5 Consensus size: 39
68265900 ACAAAGCATG
* * * * *
68265910 CGGGACTTTAAGCCCAGATATAATACCCGCAC-AAGGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
68265950 CGGGACTTTAGCCCGGATATAACATCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
68265990 CGGGACTTAGCCCGGATAT-ACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
68266028 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
68266067 CGGGACTTGGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
68266106 CGGGACTTGGCCCGGAAATAA
1 CGGGACTTAGCCCGGATATAA
68266127 TTCTCCATTA
Statistics
Matches: 162, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 36 0.22
39 105 0.65
40 21 0.13
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:68266098 original size:116 final size:117
Alignment explanation
Indices: 68265893--68266121 Score: 311
Period size: 116 Copynumber: 2.0 Consensus size: 117
68265883 CAAATCCAAT
* *
68265893 CACCACCACAAAGCATGCGGGACTTTAAGCCCAGATATAATACCCGCACAAGGCCTGCGGGACTT
1 CACCACCACAAAGCATGCGGGACTTTAAGCCCAGATATAACACCAGCACAAGGCCTGCGGGACTT
*
68265958 TAGCCCGGATATAACATCAGCACGAATGCCTTCGGGACTTAGCCCGGATATA
66 TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATA
* * * * * *
68266010 CACCAGCACAAATGCCTTCGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC
1 CACCACCACAAA-GCATGCGGGACTTTAAGCCCAGATATAACACCAGCAC-AAGGCCTGCGGGAC
* * *
68266073 -TTGGCCTGGATATAACACCAGCACGAATGCCTTCGGGACTTGGCCCGGA
64 TTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGA
68266122 AATAATTCTC
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
116 64 0.65
117 25 0.26
118 9 0.09
ACGTcount: A:0.28, C:0.31, G:0.24, T:0.18
Consensus pattern (117 bp):
CACCACCACAAAGCATGCGGGACTTTAAGCCCAGATATAACACCAGCACAAGGCCTGCGGGACTT
TAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATA
Found at i:68274253 original size:29 final size:29
Alignment explanation
Indices: 68274221--68274293 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
68274211 CTTCGAGCTC
*
68274221 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
68274250 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
68274279 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
68274294 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:68298486 original size:32 final size:33
Alignment explanation
Indices: 68298413--68298508 Score: 140
Period size: 33 Copynumber: 2.9 Consensus size: 33
68298403 ACACAGTATT
*
68298413 AGTACAGTGTGGGCCAAAGCCCTATTCAGTAAC
1 AGTACAGTCTGGGCCAAAGCCCTATTCAGTAAC
*
68298446 AGTACAGTCTGGGCCAAAGCCCTATTCAGT-GC
1 AGTACAGTCTGGGCCAAAGCCCTATTCAGTAAC
** *
68298478 AGTACAGTCTGGGCCTTAGCCCTATACAGTA
1 AGTACAGTCTGGGCCAAAGCCCTATTCAGTA
68298509 GCATTGTGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 28 0.49
33 29 0.51
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (33 bp):
AGTACAGTCTGGGCCAAAGCCCTATTCAGTAAC
Found at i:68303009 original size:19 final size:20
Alignment explanation
Indices: 68302985--68303022 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68302975 GGTACCACCA
68302985 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
68303004 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
68303023 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:68303413 original size:92 final size:90
Alignment explanation
Indices: 68303251--68303418 Score: 273
Period size: 92 Copynumber: 1.8 Consensus size: 90
68303241 CGCCCTAAGT
* *
68303251 GAACTCGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAACG
1 GAACTCGACTCAAATCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
68303316 AGTTCGGATGCCTAGTTACATTCAC
66 AGTTCGGATGCCTAGTTACATTCAC
* * *
68303341 GAACTCGGACTCAAATCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAAATCAACGAGCTCGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCAA
68303406 CGAGTTCGGATGC
64 CGAGTTCGGATGC
68303419 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
90 6 0.08
91 19 0.27
92 46 0.65
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (90 bp):
GAACTCGACTCAAATCAACGAGCTCGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTCAC
Found at i:68303434 original size:46 final size:46
Alignment explanation
Indices: 68303246--68303420 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
68303236 TAACCCGCCC
* * *
68303246 TAAGTGAACTC-GACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
* * * *
68303290 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTCGCATCCA
* * * **
68303336 TTCA-CGAACTCGGACTCAAATCAACGAGTTCGGATATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
68303382 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
68303421 AACCATCCTA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
44 10 0.10
45 24 0.23
46 67 0.64
47 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
Found at i:68303908 original size:26 final size:27
Alignment explanation
Indices: 68303845--68303908 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
68303835 AACTTTAAAA
* *
68303845 AATTACACTTTTGCCCCTAAACTTTGT
1 AATTACACTTTTGCCCCTAAACTTCGG
**
68303872 AATTACACTTTTGCCCCTAGGC-TCGG
1 AATTACACTTTTGCCCCTAAACTTCGG
*
68303898 AATTAAACTTT
1 AATTACACTTT
68303909 ATTCCTTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 12 0.38
27 20 0.62
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.38
Consensus pattern (27 bp):
AATTACACTTTTGCCCCTAAACTTCGG
Found at i:68304842 original size:17 final size:17
Alignment explanation
Indices: 68304820--68304862 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
68304810 GCTTTTGCCA
68304820 CAACACTTTCACAAGTG
1 CAACACTTTCACAAGTG
68304837 CAACACTTTCACAAGTG
1 CAACACTTTCACAAGTG
68304854 CAACACTTT
1 CAACACTTT
68304863 TATTTCTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (17 bp):
CAACACTTTCACAAGTG
Found at i:68308698 original size:40 final size:40
Alignment explanation
Indices: 68308654--68308782 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
68308644 TGCTGGAAAT
* * *
68308654 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
68308694 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
68308734 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
68308774 TATATCCGG
1 TATATCCGG
68308783 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:68310886 original size:2 final size:2
Alignment explanation
Indices: 68310879--68310904 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
68310869 GCTCTTGCAC
68310879 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
68310905 GTTTGTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68311715 original size:40 final size:39
Alignment explanation
Indices: 68311608--68311822 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 39
68311598 TGGATGATAA
*
68311608 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TAT
68311648 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAAGTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAT
* *
68311687 CCGGGCTAAGTCCCGAAGCCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
68311727 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
68311767 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
*
68311806 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68311823 TACTTGGTTG
Statistics
Matches: 159, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
37 8 0.05
38 9 0.06
39 43 0.27
40 99 0.62
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:68311763 original size:80 final size:79
Alignment explanation
Indices: 68311604--68311822 Score: 288
Period size: 79 Copynumber: 2.8 Consensus size: 79
68311594 TATTTGGATG
*
68311604 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-TCCGGGC-AAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTA-TATCCGGGCTAAGTCCCGAAGGC
68311667 ATTTGTGCGAAGTACT
64 ATTTGTGCGAAGTACT
* * * *
68311683 ATATCCGGGCTAAGTCCCGAAGCCATTGGTGCGAGTTACTATATCCGGGCTAAGTCTCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTTACTATATCCGGGCTAAGTCCCGAAGGCA
68311748 TTTGTGCG-AGTTACT
65 TTTGTGCGAAG-TACT
* *
68311763 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAG-TAGCTATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
68311823 TACTTGGTTG
Statistics
Matches: 124, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
77 7 0.06
78 9 0.07
79 55 0.44
80 53 0.43
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAAGTACT
Found at i:68317170 original size:19 final size:20
Alignment explanation
Indices: 68317146--68317183 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
68317136 GGTACCACCA
68317146 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
68317165 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
68317184 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:68317523 original size:93 final size:93
Alignment explanation
Indices: 68317412--68317582 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
68317402 GCCCCTAAGT
* * *
68317412 GAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
68317477 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
68317505 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
68317570 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68317583 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:68317572 original size:46 final size:46
Alignment explanation
Indices: 68317407--68317576 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
68317397 AACCCGCCCC
* * * * *
68317407 TAAGTGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
* * * * *
68317453 TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAG-TT-CA-GAC-A-TTCGCATCCA
* *
68317501 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
68317546 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
68317577 GGATGCTCAA
Statistics
Matches: 98, Mismatches: 17, Indels: 18
0.74 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 54 0.55
47 24 0.24
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
Found at i:68321762 original size:23 final size:23
Alignment explanation
Indices: 68321734--68321786 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
68321724 GATGAACAGC
* *
68321734 AAGCTCTATTGAGCTAAAATGGT
1 AAGCTCTAATGAGCTAAAATAGT
* *
68321757 AAGCTCCAATGAGCTGAAATAGT
1 AAGCTCTAATGAGCTAAAATAGT
*
68321780 ATGCTCT
1 AAGCTCT
68321787 TACGAGCTGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (23 bp):
AAGCTCTAATGAGCTAAAATAGT
Found at i:68328158 original size:40 final size:40
Alignment explanation
Indices: 68328114--68328301 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
68328104 ATAACCACAA
* * * * * *
68328114 GCACAATTGCCTTTGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
68328154 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
68328194 GCACGAATGCCTTCGGGTCTTAGCCCGGCTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
68328234 GCACAAATGCCTTCGGGTCTTAACCCAGATGTAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
68328274 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
68328302 GTATCATTCA
Statistics
Matches: 125, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 123 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:68328221 original size:80 final size:78
Alignment explanation
Indices: 68328094--68328301 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 78
68328084 TCTTCGGAAT
* * * * * * *
68328094 TTAG-CCGGATATAACCACAAGCACAATTGCCTTTGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
68328158 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* *
68328173 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGCTATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
68328238 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
* * * * *
68328253 TTAACCCAGATGTAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
68328302 GTATCATTCA
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.05
80 101 0.93
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAA
ATGCCTTCGGGTC
Found at i:68336293 original size:40 final size:40
Alignment explanation
Indices: 68336249--68336398 Score: 201
Period size: 40 Copynumber: 3.8 Consensus size: 40
68336239 ATAACCACAA
* * * * *
68336249 GCACAATTGCCTTTGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGGCAACTC
* *
68336289 GCACAAATGCCTTCGGGTCTTAGCCCGGATATGACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGGCAACTC
* * * *
68336329 GCACGAATGCCTTCGGGTCTTAGCCCGGCTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGGCAACTC
68336369 GCACAAATGCCTTCGGGTCTTAACCCGGAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT
68336399 GTAATCACTA
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATGGCAACTC
Found at i:68336417 original size:40 final size:40
Alignment explanation
Indices: 68336233--68336425 Score: 183
Period size: 40 Copynumber: 4.8 Consensus size: 40
68336223 CGGAATTTAG
* * * *
68336233 CCGGATATAACCACAAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* ** * * *
68336273 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
68336313 CCGGATATGA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
68336353 CCGGCTAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* *
68336393 CCGGATGTAATCACTAGCATAAATGCCTTCGGG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG
68336426 GCTAAGCCCG
Statistics
Matches: 127, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 124 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:68336418 original size:80 final size:79
Alignment explanation
Indices: 68336233--68336436 Score: 228
Period size: 80 Copynumber: 2.5 Consensus size: 79
68336223 CGGAATTTAG
* * * * * * * *
68336233 CCGGATATAACCACAAGCACAATTGCCTTTGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATG
*
68336298 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAAC
* * * *
68336313 CCGGATATGACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGCTATAGCAACTCGCACAAATG
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATG
68336378 CCTTCGGGTCTTAAC
65 CCTTCGGGTCTTAAC
* * * *
68336393 CCGGATGTAATCACTAGCATAAATGCCTTCGGGGCTAAGCCCGG
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
68336437 GTATCATTCA
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.01
80 100 0.98
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
CTTCGGGTCTTAAC
Found at i:68340189 original size:31 final size:31
Alignment explanation
Indices: 68340148--68340208 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
68340138 TTTCATATTT
* *
68340148 CATATTTCATAACACTGGGCCGAAGCCTTTC
1 CATATCTCATAACACTGGGCCAAAGCCTTTC
**
68340179 CATATCTCATATTACTGGGCCAAAGCCTTT
1 CATATCTCATAACACTGGGCCAAAGCCTTT
68340209 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (31 bp):
CATATCTCATAACACTGGGCCAAAGCCTTTC
Found at i:68340466 original size:24 final size:24
Alignment explanation
Indices: 68340402--68340570 Score: 252
Period size: 24 Copynumber: 7.0 Consensus size: 24
68340392 ATTTTTTCAT
*
68340402 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
68340427 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
68340450 ATGACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
68340474 ATAACTGGGGCATAAGTCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
68340498 ATAATTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
68340522 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
68340547 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68340571 CACTTCCTCC
Statistics
Matches: 132, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 17 0.13
24 84 0.64
25 31 0.23
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68340644 original size:20 final size:20
Alignment explanation
Indices: 68340619--68340665 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
68340609 TTATGAATAC
68340619 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68340639 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68340659 ACCATGT
1 ATCATGT
68340666 CTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68340728 original size:25 final size:25
Alignment explanation
Indices: 68340700--68340748 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
68340690 CATATTAAAA
* *
68340700 ACCTAGGGGTATAACGGTCATTTTT
1 ACCTAGGGGCAAAACGGTCATTTTT
68340725 ACCTAGGGGCAAAACGGTCATTTT
1 ACCTAGGGGCAAAACGGTCATTTT
68340749 CATATTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (25 bp):
ACCTAGGGGCAAAACGGTCATTTTT
Found at i:68348687 original size:29 final size:29
Alignment explanation
Indices: 68348597--68348756 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
68348587 ACTCGATTTC
* * **
68348597 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
68348626 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
68348654 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
68348684 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68348713 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68348742 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
68348757 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:68350505 original size:25 final size:25
Alignment explanation
Indices: 68350477--68350530 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
68350467 CTCGGTTTGT
68350477 GGTCCCGAAACCACTCTCCGACTAG
1 GGTCCCGAAACCACTCTCCGACTAG
68350502 GGTCCCGAAACCACTCTCCGACTAG
1 GGTCCCGAAACCACTCTCCGACTAG
68350527 GGTC
1 GGTC
68350531 ACATTAGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.39, G:0.22, T:0.17
Consensus pattern (25 bp):
GGTCCCGAAACCACTCTCCGACTAG
Found at i:68357259 original size:16 final size:16
Alignment explanation
Indices: 68357234--68357266 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
68357224 CTAGATCGGC
*
68357234 AAAAGTCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
68357250 AAAAGCCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
68357266 A
1 A
68357267 CATTTTTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.15, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:68357971 original size:60 final size:60
Alignment explanation
Indices: 68357894--68358030 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 60
68357884 AACTATGTTA
* * *
68357894 ATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGGCTACAGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GATATTGTAA-AGGGCTACAGCCCAGATTAATACTG
* ** *
68357954 ATATGGGCTAGGCCCAATATACTCTGATATTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATATTGTAAAGGGCTACAGCCCAGATTAATACTG
68358014 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
68358031 GTTAACACTG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
60 51 0.76
61 16 0.24
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTGATATTGTAAAGGGCTACAGCCCAGATTAATACTG
Found at i:68362939 original size:28 final size:27
Alignment explanation
Indices: 68362899--68362951 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
68362889 ATACTGTTAG
* *
68362899 GGGCTATGGCCCTGATTAATATTGATAT
1 GGGCTAAGGCCCTG-TTAACATTGATAT
68362927 GGGCTAAGGCCCTGTTAACATTGAT
1 GGGCTAAGGCCCTGTTAACATTGAT
68362952 TTCTGAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (27 bp):
GGGCTAAGGCCCTGTTAACATTGATAT
Found at i:68367145 original size:51 final size:49
Alignment explanation
Indices: 68366962--68367150 Score: 225
Period size: 50 Copynumber: 3.8 Consensus size: 49
68366952 TGGACAAGGC
* * * *
68366962 TATCTGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * *
68367011 TACCCGATACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* *
68367061 CATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
68367112 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
68367151 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 38 0.32
50 43 0.37
51 36 0.31
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:68367424 original size:27 final size:27
Alignment explanation
Indices: 68367384--68367437 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68367374 AGGTACAACC
* *
68367384 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
68367411 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
68367438 TCACATTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:68372914 original size:50 final size:49
Alignment explanation
Indices: 68372796--68372985 Score: 191
Period size: 49 Copynumber: 3.8 Consensus size: 49
68372786 GTGGACAAGG
* * * * * * *
68372796 TTATCTGGTACTCATAGTAGCATACACTTAGTACTACACATGCGTCCAA
1 TTATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAA
* * *
68372845 TTATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTA
1 TTATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAA
* * *
68372894 TCTATCCTGTACACGTAGTAGCCTACACTTAATACTACACACGTGATCGAA
1 T-TATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGA-CCAA
* * * * *
68372945 GTTATCGGGTACGCATAGTAGCCTGCTCTTAGTACTACACA
1 -TTATCCGGTACACGTAGTAGCCTACACTTAGTACTACACA
68372986 TGCGACCTCA
Statistics
Matches: 115, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 40 0.35
50 40 0.35
51 34 0.30
52 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (49 bp):
TTATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAA
Found at i:68372993 original size:101 final size:99
Alignment explanation
Indices: 68372810--68372993 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 99
68372800 CTGGTACTCA
* * **
68372810 TAGTAGCATACACTTAGTACTACACATGCGTCCAATTATCCGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCATACACTTAATACTACACACGCGTCCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
68372875 GTACTACACACGTGACCTATCTATCCTGTACACG
66 GTACTACACACGCGACCTATCTATCCTGTACACG
* * * * * *
68372909 TAGTAGCCTACACTTAATACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCTCT
1 TAGTAGCATACACTTAATACTACACACGCG-TCCAA-TTATCCGGTACACATAGTAGCCTGCACT
*
68372974 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
68372994 CAAAATAGAT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 26 0.37
100 4 0.06
101 41 0.58
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (99 bp):
TAGTAGCATACACTTAATACTACACACGCGTCCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTATCTATCCTGTACACG
Found at i:68373258 original size:27 final size:27
Alignment explanation
Indices: 68373218--68373271 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68373208 AGGTACAACC
* *
68373218 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
68373245 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
68373272 TCACATTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:68375339 original size:20 final size:20
Alignment explanation
Indices: 68375303--68375340 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68375293 ATCAGCTCAC
*
68375303 TTGAGCTTGTTTCAGCTTGT
1 TTGAGCTTATTTCAGCTTGT
68375323 TTGAGCTTAATTT-AGCTT
1 TTGAGCTT-ATTTCAGCTT
68375341 CTTTCCAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.16, C:0.13, G:0.21, T:0.50
Consensus pattern (20 bp):
TTGAGCTTATTTCAGCTTGT
Found at i:68377894 original size:21 final size:20
Alignment explanation
Indices: 68377866--68377924 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 20
68377856 AATCAATCGA
68377866 GAGAAAAAGAAAAGAATGAATGT
1 GAGAAAAAGAAAAGAA--AA-GT
68377889 GA-AAAAA-AAAAGAAAAGT
1 GAGAAAAAGAAAAGAAAAGT
68377907 GAGAAAAAGAAAA-AAAAG
1 GAGAAAAAGAAAAGAAAAG
68377925 AATAGCAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.12
19 12 0.35
20 4 0.12
21 7 0.21
22 5 0.15
23 2 0.06
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (20 bp):
GAGAAAAAGAAAAGAAAAGT
Found at i:68377915 original size:15 final size:15
Alignment explanation
Indices: 68377895--68377991 Score: 62
Period size: 15 Copynumber: 6.7 Consensus size: 15
68377885 ATGTGAAAAA
*
68377895 AAAAAGAAAAGTGAG
1 AAAAAGAAAAGAGAG
* *
68377910 AAAAAGAAAAAAAAG
1 AAAAAGAAAAGAGAG
*
68377925 -AATAGCAAAAGAGAG
1 AAAAAG-AAAAGAGAG
*
68377940 AGAAAAG-AAAGTGAG
1 A-AAAAGAAAAGAGAG
68377955 -AAAAGAAAA-AGATG
1 AAAAAGAAAAGAGA-G
*
68377969 AACAAGAAAA-AGA-
1 AAAAAGAAAAGAGAG
*
68377982 AAATAGAAAA
1 AAAAAGAAAA
68377992 AAAGTTTTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
13 15 0.23
14 8 0.12
15 37 0.58
17 4 0.06
ACGTcount: A:0.71, C:0.02, G:0.22, T:0.05
Consensus pattern (15 bp):
AAAAAGAAAAGAGAG
Found at i:68377991 original size:7 final size:6
Alignment explanation
Indices: 68377889--68377992 Score: 50
Period size: 6 Copynumber: 16.0 Consensus size: 6
68377879 GAATGAATGT
* * * *
68377889 GAAAAA -AAAAA GAAAAGTGA GAAAAA GAAAAA AAAGAATA GCAAAA GAGAGA
1 GAAAAA GAAAAA GAAAA---A GAAAAA GAAAAA GAA-AA-A GAAAAA GAAAAA
**
68377941 G-AAAA GAAAGT GAGAAAA GAAAAA GATGAACAA GAAAAA GAAAATA GAAAAA
1 GAAAAA GAAAAA GA-AAAA GAAAAA GA--AA-AA GAAAAA GAAAA-A GAAAAA
68377993 AAGTTTTATT
Statistics
Matches: 74, Mismatches: 12, Indels: 24
0.67 0.11 0.22
Matches are distributed among these distances:
5 8 0.11
6 36 0.49
7 16 0.22
8 4 0.05
9 10 0.14
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.05
Consensus pattern (6 bp):
GAAAAA
Found at i:68377996 original size:45 final size:44
Alignment explanation
Indices: 68377901--68377996 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 44
68377891 AAAAAAAAAG
* * *
68377901 AAAAGTGAGAAAAAGAAAAAAAAGAATAGCAAAAGAGAGAGAAA
1 AAAAGTGAGAAAAAGAAAAAAAAGAAAAGAAAAAGAAAGAGAAA
* * *
68377945 AGAAAGTGAG-AAAAGAAAAAGATGAACAAGAAAAAGAAAATAGAAA
1 A-AAAGTGAGAAAAAGAAAAAAAAGAA-AAGAAAAAG-AAAGAGAAA
68377991 AAAAGT
1 AAAAGT
68377997 TTTATTGCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
44 15 0.35
45 20 0.47
46 8 0.19
ACGTcount: A:0.70, C:0.02, G:0.22, T:0.06
Consensus pattern (44 bp):
AAAAGTGAGAAAAAGAAAAAAAAGAAAAGAAAAAGAAAGAGAAA
Found at i:68387666 original size:43 final size:43
Alignment explanation
Indices: 68387619--68387703 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
68387609 CAATGCCAAC
** *
68387619 GTCCCAGACAT-GGTCTTACAT-GTAGCCACATATCGATGCCATT
1 GTCCCAGAC-TCGGTCTTAC-TCGTAAACACAAATCGATGCCATT
68387662 GTCCCAGACTCGGTCTTACTCGTAAACACAAATCGATGCCAT
1 GTCCCAGACTCGGTCTTACTCGTAAACACAAATCGATGCCAT
68387704 GAACTTACTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 2 0.05
43 35 0.95
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCCCAGACTCGGTCTTACTCGTAAACACAAATCGATGCCATT
Found at i:68390874 original size:27 final size:26
Alignment explanation
Indices: 68390831--68390916 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
68390821 GGAGAAAGCA
68390831 TTCTGGTGGC-CATGCCACAAATATCTG
1 TTCTGGTGGCTC-TGCCAC-AATATCTG
*
68390858 TTCTGGTGGCTCCGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* * *
68390884 TATCTGGTGACTCTGTCACAATATTTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
68390911 TTCTGG
1 TTCTGG
68390917 CAACCATGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.27
27 37 0.71
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:68393625 original size:14 final size:14
Alignment explanation
Indices: 68393606--68393636 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
68393596 CTTATCTACA
68393606 TGGTGTCCTTCACT
1 TGGTGTCCTTCACT
68393620 TGGTGTCCTTCACT
1 TGGTGTCCTTCACT
68393634 TGG
1 TGG
68393637 AACCATGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.26, G:0.26, T:0.42
Consensus pattern (14 bp):
TGGTGTCCTTCACT
Found at i:68394494 original size:30 final size:30
Alignment explanation
Indices: 68394460--68394520 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68394450 TCCTTAACTC
68394460 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
68394490 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
68394520 A
1 A
68394521 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:68396265 original size:70 final size:70
Alignment explanation
Indices: 68396188--68396322 Score: 216
Period size: 70 Copynumber: 1.9 Consensus size: 70
68396178 TAGTTTATTA
* * * * *
68396188 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATAGGCTGTCCAAATTAGGACAAAATCATGGTG
68396253 CTTAG
66 CTTAG
*
68396258 CTAATTAATATGCTGCTGTAATACTGTAATTTATAGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATAGGCTGTCCAAATTAGGACAAAATCATGGTG
68396323 TTATGTGCTA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATAGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:68399263 original size:40 final size:40
Alignment explanation
Indices: 68399218--68399384 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68399208 CGGAATATAA
68399218 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68399258 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68399298 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68399338 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68399377 CCGGATAT
1 CCGGATAT
68399385 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68399368 original size:80 final size:79
Alignment explanation
Indices: 68399218--68399384 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
68399208 CGGAATATAA
* *
68399218 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
68399283 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
68399298 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
68399360 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
68399377 CCGGATAT
1 CCGGATAT
68399385 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:68400233 original size:17 final size:19
Alignment explanation
Indices: 68400210--68400255 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68400200 AAGAAGCATG
68400210 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68400228 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68400246 AATCATGCTC
1 AATCATGCTC
68400256 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68407370 original size:70 final size:71
Alignment explanation
Indices: 68407219--68407381 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
68407209 GAGATGTATC
68407219 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68407284 AGGACA
66 AGGACA
68407290 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
68407354 CGGACA
66 AGGACA
68407360 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
68407382 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:68413960 original size:71 final size:71
Alignment explanation
Indices: 68413872--68414035 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
68413862 GAGATGTATC
68413872 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
68413937 AGGACA
66 AGGACA
*
68413943 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
68414008 CGGACA
66 AGGACA
68414014 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
68414036 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:68416346 original size:96 final size:96
Alignment explanation
Indices: 68416234--68416444 Score: 343
Period size: 97 Copynumber: 2.2 Consensus size: 96
68416224 ATTATCGGGG
**
68416234 TATTCTGCGTTTTCTCTATGAGTTTGGTTTT-GATTCTCCGGCATAGTATCGTATCTTGGGTTTC
1 TATTCTG-GTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
68416298 TTTATCCTAAATCTCTTTATTCTGGATTTCTT
65 TTTATCCTAAATCTCTTTATTCTGGATTTCTT
68416330 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
1 TATTCTG-GTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
**
68416395 TTTATCCTGGATCTCTTTATTCTGGATTTCTT
65 TTTATCCTAAATCTCTTTATTCTGGATTTCTT
* *
68416427 TTTTCTGGGTTTCTCTAT
1 TATTCTGGTTTTCTCTAT
68416445 CTTGGATTTC
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 40 0.37
97 67 0.63
ACGTcount: A:0.14, C:0.18, G:0.17, T:0.52
Consensus pattern (96 bp):
TATTCTGGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTCT
TTATCCTAAATCTCTTTATTCTGGATTTCTT
Found at i:68416411 original size:15 final size:15
Alignment explanation
Indices: 68416391--68416459 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
68416381 GTATCTTAAG
68416391 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
68416406 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* * *
68416421 TTTCTTTTTTCTGGG
1 TTTCTTTATCCTGGA
* *
68416436 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
68416451 TTTCTTTAT
1 TTTCTTTAT
68416460 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.10, C:0.17, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:68421793 original size:40 final size:40
Alignment explanation
Indices: 68421694--68421874 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
68421684 TTTGAATGGT
* * *
68421694 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
68421735 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
*
68421776 AT-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
68421815 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
68421856 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
68421875 ACAATCGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
39 5 0.04
40 82 0.68
41 34 0.28
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:68421836 original size:80 final size:81
Alignment explanation
Indices: 68421697--68421874 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 81
68421687 GAATGGTATC
* *
68421697 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
68421762 TGCGAGTTACCAAAAT
66 TGCGAGTTACCAAAAT
* * *
68421778 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATT
* * * * *
68421841 GTGCGAATCACTATAAC
65 GTGCGAGTTACCAAAAT
*
68421858 CGGGCTATGTCCCGAAG
1 CGGGCTAAGTCCCGAAG
68421875 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 58 0.69
81 25 0.30
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAGTTACCAAAAT
Found at i:68421887 original size:40 final size:40
Alignment explanation
Indices: 68421817--68421900 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
68421807 GTTACTAAAT
* * *
68421817 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* *
68421857 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAATCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
68421897 CCGG
1 CCGG
68421901 TTAAATTCCG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:68421899 original size:80 final size:80
Alignment explanation
Indices: 68421730--68421914 Score: 185
Period size: 80 Copynumber: 2.3 Consensus size: 80
68421720 GTGCTAAGTG
* * * * *
68421730 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAATCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
* * * * * *
68421795 GCATTTGTGCGAGTT
66 ACAATCGAGCGAATC
* * *
68421810 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAA
68421874 GACAATCGAGCGAATC
65 GACAATCGAGCGAATC
* * * *
68421890 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
68421915 TACGTGATTC
Statistics
Matches: 85, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
79 8 0.09
80 77 0.91
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAATC
Found at i:68424319 original size:39 final size:39
Alignment explanation
Indices: 68424270--68424391 Score: 226
Period size: 39 Copynumber: 3.1 Consensus size: 39
68424260 AATGTATGCA
* *
68424270 TAAGTATATTGTCTAAATGGGAAAATAGAAAAATTGGTG
1 TAAGCATATTGTCTAAATGGGAAAATAGGAAAATTGGTG
68424309 TAAGCATATTGTCTAAATGGGAAAATAGGAAAATTGGTG
1 TAAGCATATTGTCTAAATGGGAAAATAGGAAAATTGGTG
68424348 TAAGCATATTGTCTAAATGGGAAAATAGGAAAATTGGTG
1 TAAGCATATTGTCTAAATGGGAAAATAGGAAAATTGGTG
68424387 TAAGC
1 TAAGC
68424392 CAACATGAAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.29
Consensus pattern (39 bp):
TAAGCATATTGTCTAAATGGGAAAATAGGAAAATTGGTG
Found at i:68425363 original size:15 final size:15
Alignment explanation
Indices: 68425324--68425366 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
68425314 GTATCTTGGG
*
68425324 TTTCTTTATCCTGAA
1 TTTCTTTATTCTGAA
* *
68425339 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGAA
68425354 TTTCTTTATTCTG
1 TTTCTTTATTCTG
68425367 TGTTTTCTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.14, C:0.19, G:0.09, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGAA
Found at i:68425375 original size:97 final size:97
Alignment explanation
Indices: 68425263--68425474 Score: 363
Period size: 97 Copynumber: 2.2 Consensus size: 97
68425253 ATTATCGGGG
* **
68425263 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTTGATTCTCCGGCATAGTATCGTATCTTGGGTTTC
1 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
68425328 TTTATCCTGAATCTCTTTATTCTGGATTTCTT
66 TTTATCCTGAATCTCTTTATTCTGGATTTCTT
68425360 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
1 TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
*
68425425 TTTATCCTGGATCTCTTTATTCTGGATTTCTT
66 TTTATCCTGAATCTCTTTATTCTGGATTTCTT
* *
68425457 TTTTCTG-GGTTTCTCTAT
1 TATTCTGTGTTTTCTCTAT
68425475 CTTGGATTTC
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
96 10 0.09
97 99 0.91
ACGTcount: A:0.13, C:0.17, G:0.17, T:0.53
Consensus pattern (97 bp):
TATTCTGTGTTTTCTCTATGAGTTTGGTTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
TTTATCCTGAATCTCTTTATTCTGGATTTCTT
Found at i:68425498 original size:14 final size:15
Alignment explanation
Indices: 68425421--68425500 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
68425411 GTATCTTAAG
*
68425421 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
68425436 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
68425451 TTTCTTTTTTCTGGG
1 TTTCTTTATTCTGGA
*
68425466 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
68425481 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
68425495 TTTCTT
1 TTTCTT
68425501 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 11 0.21
15 41 0.77
16 1 0.02
ACGTcount: A:0.09, C:0.16, G:0.14, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:68427946 original size:46 final size:45
Alignment explanation
Indices: 68427893--68428068 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 45
68427883 TATTTGGGCA
68427893 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
68427939 TCCGAACTCATTGAATTGAGTCCGAGTTCA-TGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* **
68427984 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
68428032 TCC-AAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68428069 GCGGGCTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 60 0.57
47 27 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:68428051 original size:93 final size:93
Alignment explanation
Indices: 68427889--68428060 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
68427879 AGGATATTTG
**
68427889 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCATTGAA
68427954 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * *
68427982 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACATCC-AAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAA-CTCATTGA
* *
68428046 GTTGAGTCTGAGTTC
65 ATTGAGTCCGAGTTC
68428061 GCTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCATTGAA
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:68430932 original size:16 final size:16
Alignment explanation
Indices: 68430911--68430944 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
68430901 TGGGCACGAG
*
68430911 AGCTACCTTAGTAGCT
1 AGCTACCTCAGTAGCT
68430927 AGCTACCTCAGTAGCT
1 AGCTACCTCAGTAGCT
68430943 AG
1 AG
68430945 TGTGGGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (16 bp):
AGCTACCTCAGTAGCT
Found at i:68438694 original size:15 final size:15
Alignment explanation
Indices: 68438674--68438703 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68438664 CACGACCCAC
68438674 AATACCAGTATTAGG
1 AATACCAGTATTAGG
68438689 AATACCAGTATTAGG
1 AATACCAGTATTAGG
68438704 CCTAGTGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
AATACCAGTATTAGG
Found at i:68443050 original size:43 final size:43
Alignment explanation
Indices: 68443000--68443086 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
68442990 ATTTGTGTTT
**
68443000 TCGATATGTGTTTACGA-GTAAGACC-CAGTCTGGGACAG-TGGCA
1 TCGATATGTGGCTAC-ATGTAAGACCAC-GTCTGGGAC-GTTGGCA
68443043 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
68443086 T
1 T
68443087 TGTACAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (43 bp):
TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
Done.