Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 228 of 328
Found at i:68448994 original size:28 final size:29
Alignment explanation
Indices: 68448958--68449014 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
68448948 ATTAAACAAC
*
68448958 AATTAGACA-ACTTAAATGATACTAACTA
1 AATTAGACATACTTAAATGAAACTAACTA
* * *
68448986 AATTGGACATATTTAATTGAAACTAACTA
1 AATTAGACATACTTAAATGAAACTAACTA
68449015 GCATATTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (29 bp):
AATTAGACATACTTAAATGAAACTAACTA
Found at i:68451802 original size:68 final size:67
Alignment explanation
Indices: 68451730--68451879 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
68451720 CATCATGTGT
* * * *
68451730 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
68451792 ATGTAG
62 ATGTAG
** * *
68451798 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
68451863 AG
66 AG
68451865 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
68451880 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:68451835 original size:64 final size:64
Alignment explanation
Indices: 68451754--68451936 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
68451744 AGACATTATG
* *
68451754 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
68451818 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
68451883 AA
63 AA
* * * *
68451885 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
68451937 TCGAACTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:68453769 original size:7 final size:7
Alignment explanation
Indices: 68453757--68453807 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
68453747 TCCCTAAATC
68453757 ATTTGAA
1 ATTTGAA
68453764 ATTTGAA
1 ATTTGAA
68453771 ATTTGAA
1 ATTTGAA
68453778 ATTTG-A
1 ATTTGAA
* *
68453784 ATGATGATT
1 AT-TTGA-A
68453793 ATTTGAA
1 ATTTGAA
68453800 ATTTGAA
1 ATTTGAA
68453807 A
1 A
68453808 ATGTGTGTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 3 0.08
7 29 0.78
8 3 0.08
9 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (7 bp):
ATTTGAA
Found at i:68455972 original size:27 final size:26
Alignment explanation
Indices: 68455907--68455985 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
68455897 TGGCTGCCAA
* *
68455907 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
*
68455933 ATACAGATATTGTGGCAGAGCCACTAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
68455960 AACAGATATTTGTGGCATG-GCCACCA
1 AACAGATA-TTGTGGCA-GAGCCACCA
68455986 AAATGCTTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 8 0.17
27 37 0.80
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68461045 original size:28 final size:28
Alignment explanation
Indices: 68460987--68461048 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
68460977 ATGTACTAGA
* *
68460987 ATACCTCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
68461015 ATACCCCTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATGACCAT-T
68461043 ATACCC
1 ATACCC
68461049 TTAGGGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:68461215 original size:27 final size:27
Alignment explanation
Indices: 68461157--68461246 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
68461147 AGGAAGCGTC
*
68461157 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCAATGCCACAAA-TATCTGTT
** *
68461185 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCAATGCCACAAATATCTGTT
*
68461212 CTGGTGGCATTGCCACAAAATATCTGTAT
1 CTGGTGGCAATGCCAC-AAATATCTGT-T
68461241 CTGGTG
1 CTGGTG
68461247 ACTCTGTCAT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCAATGCCACAAATATCTGTT
Found at i:68461265 original size:55 final size:56
Alignment explanation
Indices: 68461157--68461271 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
68461147 AGGAAGCGTC
* *
68461157 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
68461212 CTGGTGGC-ATTGCCACAAAATATCTGTATCTGGTGACTCTGTCATAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
68461268 CTGG
1 CTGG
68461272 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:68463084 original size:30 final size:30
Alignment explanation
Indices: 68463048--68463176 Score: 151
Period size: 30 Copynumber: 4.5 Consensus size: 30
68463038 GACAAGATTG
* * *
68463048 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
68463078 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
68463106 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
68463136 GCACTAAGTGTGCGAG-CTGAAA--ATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
68463163 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68463177 GATTCACTAT
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
27 19 0.22
28 23 0.26
29 3 0.03
30 42 0.48
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:68463139 original size:58 final size:57
Alignment explanation
Indices: 68463048--68463176 Score: 177
Period size: 58 Copynumber: 2.2 Consensus size: 57
68463038 GACAAGATTG
* * * * * **
68463048 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAAATATA
*
68463106 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAAATATA
68463163 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68463177 GATTCACTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
57 22 0.35
58 41 0.65
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAAATATA
Found at i:68471039 original size:30 final size:30
Alignment explanation
Indices: 68471003--68471133 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
68470993 GACAAGATTG
* * * * *
68471003 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
68471033 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
68471061 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
68471091 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
68471120 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68471134 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:68471094 original size:58 final size:58
Alignment explanation
Indices: 68471003--68471133 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
68470993 GACAAGATTG
* * * * * *
68471003 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
68471061 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
68471120 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68471134 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:68473252 original size:24 final size:24
Alignment explanation
Indices: 68473220--68473306 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
68473210 AATCTCAAAT
68473220 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
68473244 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
68473268 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
68473292 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
68473307 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:68473272 original size:48 final size:48
Alignment explanation
Indices: 68473220--68473328 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
68473210 AATCTCAAAT
** *
68473220 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
68473268 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
68473316 GCACTATGTGTGC
1 GCACTATGTGTGC
68473329 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:68473319 original size:24 final size:24
Alignment explanation
Indices: 68473220--68473328 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
68473210 AATCTCAAAT
*
68473220 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
68473244 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
68473268 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
68473292 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
68473316 GCACTATGTGTGC
1 GCACTATGTGTGC
68473329 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:68481125 original size:24 final size:24
Alignment explanation
Indices: 68481093--68481179 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
68481083 AATCTCAAAT
68481093 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
68481117 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
68481141 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
68481165 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
68481180 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:68481145 original size:48 final size:48
Alignment explanation
Indices: 68481093--68481201 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
68481083 AATCTCAAAT
** *
68481093 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
68481141 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
68481189 GCACTATGTGTGC
1 GCACTATGTGTGC
68481202 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:68481192 original size:24 final size:24
Alignment explanation
Indices: 68481093--68481201 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
68481083 AATCTCAAAT
*
68481093 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
68481117 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
68481141 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
68481165 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
68481189 GCACTATGTGTGC
1 GCACTATGTGTGC
68481202 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:68484861 original size:19 final size:20
Alignment explanation
Indices: 68484826--68484864 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
68484816 ATATTCAGAG
68484826 ACTTAGTATGATATATACAT
1 ACTTAGTATGATATATACAT
68484846 ACTT-GTAT-ATATTATACAT
1 ACTTAGTATGATA-TATACAT
68484865 TTCATAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 11 0.61
20 4 0.22
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (20 bp):
ACTTAGTATGATATATACAT
Found at i:68485048 original size:42 final size:42
Alignment explanation
Indices: 68484987--68485104 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 42
68484977 AATTCAATGG
* *
68484987 CGATGCCTCTGTCCTAGACAAGGTCTTACAC-AAAATC-AAAT
1 CGATGCC-GTGTCCCAGACAAGGTCTTACACGAAAATCTAAAT
* * * *
68485028 ACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAAT
1 -CGATGCCG-TGTCCCAGACAAGGTCTTACACGAAAATCTAAAT
* *
68485072 CGAGGCCTGTGTCCCAGACACGGTCTTACACGA
1 CGATGCC-GTGTCCCAGACAAGGTCTTACACGA
68485105 TATCTCAGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
42 26 0.42
43 32 0.52
44 4 0.06
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (42 bp):
CGATGCCGTGTCCCAGACAAGGTCTTACACGAAAATCTAAAT
Found at i:68485091 original size:85 final size:84
Alignment explanation
Indices: 68484946--68485102 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 84
68484936 AACAAGTACA
* * * * *
68484946 ATGCCGATGTCCTAGACGTGGTCTTACATGTAATTCAATGGCGATGCCTCTGTCCTAGACAAGGT
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAATTCAAT-GCGAGGCCTCTGTCCCAGACAAGGT
68485011 CTTACACAAAATCAAATACG
65 CTTACACAAAATCAAATACG
* * *
68485031 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAAT-CGAGGCCTGTGTCCCAGACACGG
1 ATGCCGATGTCCCAGACATGGTCTTACACGT-AAT-TCAATGCGAGGCCTCTGTCCCAGACAAGG
68485095 TCTTACAC
64 TCTTACAC
68485103 GATATCTCAG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 54 0.87
86 3 0.05
87 5 0.08
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (84 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAATTCAATGCGAGGCCTCTGTCCCAGACAAGGTC
TTACACAAAATCAAATACG
Found at i:68487488 original size:46 final size:45
Alignment explanation
Indices: 68487421--68487592 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
68487411 AACCCGCCCC
*
68487421 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* *
68487467 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGCTGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * * *
68487515 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGAATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
68487560 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
68487593 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:68488045 original size:29 final size:30
Alignment explanation
Indices: 68488013--68488071 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
68488003 ATTTAATACG
68488013 AACTTTGGAAAAATTACACTTTT-CCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
68488042 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
68488072 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:68492089 original size:30 final size:30
Alignment explanation
Indices: 68492055--68492114 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
68492045 ATTTAATACG
68492055 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
68492085 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
68492115 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:68495993 original size:79 final size:81
Alignment explanation
Indices: 68495891--68496075 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
68495881 ACGACTCGCT
** * * *
68495891 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATACCTTC-GGATCCTAACCC
* *
68495954 GGGTTTAATAACTT-GCA
64 GGATATAATAACTTAGCA
* **
68495971 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATACCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATACCTTCGGATCCTAACCCGG
* *
68496035 ATATAGTCACTTAGCA
66 ATATAATAACTTAGCA
68496051 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68496076 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATACCTTCGGATCCTAACCCGG
ATATAATAACTTAGCA
Found at i:68496075 original size:40 final size:39
Alignment explanation
Indices: 68495884--68496075 Score: 147
Period size: 40 Copynumber: 4.8 Consensus size: 39
68495874 GGATATAACG
* ** * *
68495884 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * * *
68495924 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAATA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
68495964 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
68496003 ACTCGCACGAATA-CCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AA-AGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
68496043 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
68496076 CATCATTCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 77 0.64
41 11 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:68500245 original size:29 final size:29
Alignment explanation
Indices: 68500151--68500223 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
68500141 GTGACGAGAT
68500151 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68500180 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
68500209 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
68500224 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:68500319 original size:2 final size:2
Alignment explanation
Indices: 68500314--68500340 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68500304 GTGTGCGTAC
68500314 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
68500341 CTCCAATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68502527 original size:23 final size:24
Alignment explanation
Indices: 68502471--68502570 Score: 166
Period size: 24 Copynumber: 4.2 Consensus size: 24
68502461 GGCCTAGCTT
* *
68502471 CTTTTAATAACTGGGGCAAAATCC
1 CTTTTAATAACTGGGGCATAAGCC
68502495 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
68502519 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
68502542 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
68502566 CTTTT
1 CTTTT
68502571 TCACTTCCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
23 23 0.32
24 49 0.68
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:68502544 original size:47 final size:47
Alignment explanation
Indices: 68502473--68502569 Score: 167
Period size: 47 Copynumber: 2.1 Consensus size: 47
68502463 CCTAGCTTCT
*
68502473 TTTAATAACTGGGGCAAAATCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
68502520 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
68502567 TTT
1 TTT
68502570 TTCACTTCCT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:68502645 original size:20 final size:20
Alignment explanation
Indices: 68502620--68502686 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
68502610 TTATGATTAC
68502620 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68502640 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68502660 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
68502680 ACCATGT
1 ATCATGT
68502687 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68502651 original size:11 final size:11
Alignment explanation
Indices: 68502620--68502675 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
68502610 TTATGATTAC
68502620 ATCATGTGCAT
1 ATCATGTGCAT
*
68502631 ATCA--TACAT
1 ATCATGTGCAT
68502640 ATCATGTGCAT
1 ATCATGTGCAT
*
68502651 ATCA--TACAT
1 ATCATGTGCAT
*
68502660 GTCATGTGCAT
1 ATCATGTGCAT
68502671 ATCAT
1 ATCAT
68502676 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:68502755 original size:25 final size:25
Alignment explanation
Indices: 68502723--68502770 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68502713 ATCCATCAAC
* * *
68502723 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
68502748 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
68502771 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:68514889 original size:47 final size:47
Alignment explanation
Indices: 68514835--68515217 Score: 534
Period size: 47 Copynumber: 8.1 Consensus size: 47
68514825 TTAGGATTTT
** * * *
68514835 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68514882 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* *
68514933 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
68514980 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68515027 ATGTGATGAATGTGAACATGCGTATCTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68515074 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68515121 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
68515168 ATGTGATGAATGTGAACGTGTATATATGT-AGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGA-TAAGGCCGAATGGCCA
68515215 ATG
1 ATG
68515218 AGAAATGTGT
Statistics
Matches: 312, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 263 0.84
49 11 0.04
51 37 0.12
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68515102 original size:141 final size:141
Alignment explanation
Indices: 68514835--68515217 Score: 588
Period size: 141 Copynumber: 2.7 Consensus size: 141
68514825 TTAGGATTTT
** * * *
68514835 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
68514900 TGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 TG--TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
68514965 AAGGCCGAATGGCCA
127 AAGGCCGAATGGCCA
* * * *
68514980 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** *
68515045 TGCGTATCTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGG
66 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGG
68515110 CCGAATGGCCA
131 CCGAATGGCCA
*
68515121 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACG
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
68515186 TGTATATATGT-AGTAAGGCCGAATGGCTAATG
66 TGTATATATGTGA-TAAGGCCGAATGGCCAATG
68515218 AGAAATGTGT
Statistics
Matches: 216, Mismatches: 21, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
140 1 0.00
141 153 0.71
143 4 0.02
145 58 0.27
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGG
CCGAATGGCCA
Found at i:68515327 original size:46 final size:46
Alignment explanation
Indices: 68515191--68515327 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
68515181 GAACGTGTAT
* * *
68515191 ATATGTAGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * *
68515237 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * * *
68515283 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATG
68515328 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:68515622 original size:37 final size:37
Alignment explanation
Indices: 68515484--68515621 Score: 240
Period size: 37 Copynumber: 3.7 Consensus size: 37
68515474 CCTGGGATTA
*
68515484 AAGACCAGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
68515521 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
68515558 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
68515595 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
68515622 TCATCTGAGC
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:68520340 original size:46 final size:46
Alignment explanation
Indices: 68520290--68520465 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68520280 TATTTGGGCA
68520290 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68520336 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
68520383 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
68520429 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68520466 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68520445 original size:93 final size:93
Alignment explanation
Indices: 68520286--68520457 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68520276 TGGATATTTG
* *
68520286 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68520351 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68520379 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68520444 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68520458 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68523436 original size:15 final size:15
Alignment explanation
Indices: 68523416--68523484 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
68523406 GTATCTTGGG
68523416 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
68523431 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
68523446 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
68523461 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
68523476 TTTCTTTAT
1 TTTCTTTAT
68523485 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:68523485 original size:30 final size:30
Alignment explanation
Indices: 68523407--68523494 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
68523397 CATAGTATCG
* * * *
68523407 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
68523437 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
68523467 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
68523495 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:68525933 original size:46 final size:46
Alignment explanation
Indices: 68525880--68526055 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68525870 TATTTGGGCA
68525880 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68525926 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
68525973 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
68526019 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68526056 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68526035 original size:93 final size:93
Alignment explanation
Indices: 68525876--68526047 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68525866 GGGATATTTG
* *
68525876 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68525941 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68525969 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68526034 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68526048 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68527836 original size:29 final size:29
Alignment explanation
Indices: 68527799--68527893 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 29
68527789 AAATTACAAT
*
68527799 TTTTCCCCTAAACTTTTGCATATTTACAC
1 TTTTGCCCTAAACTTTTGCATATTTACAC
** * * *
68527828 TTTTGCCCT-AA-TGCT-CGTAAATTAAAC
1 TTTTGCCCTAAACTTTTGCAT-ATTTACAC
*
68527855 TTTAG-CCTAAACTTTTGCATATTTACAC
1 TTTTGCCCTAAACTTTTGCATATTTACAC
68527883 TTTTGCCCTAA
1 TTTTGCCCTAA
68527894 TGCTCGTAAA
Statistics
Matches: 48, Mismatches: 13, Indels: 10
0.68 0.18 0.14
Matches are distributed among these distances:
26 5 0.10
27 14 0.29
28 14 0.29
29 15 0.31
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.42
Consensus pattern (29 bp):
TTTTGCCCTAAACTTTTGCATATTTACAC
Found at i:68527875 original size:55 final size:55
Alignment explanation
Indices: 68527805--68527918 Score: 219
Period size: 55 Copynumber: 2.1 Consensus size: 55
68527795 CAATTTTTCC
*
68527805 CCTAAACTTTTGCATATTTACACTTTTGCCCTAATGCTCGTAAATTAAACTTTAG
1 CCTAAACTTTTGCATATTTACACTTTTGCCCTAATGCTCGTAAATTAAACTTCAG
68527860 CCTAAACTTTTGCATATTTACACTTTTGCCCTAATGCTCGTAAATTAAACTTCAG
1 CCTAAACTTTTGCATATTTACACTTTTGCCCTAATGCTCGTAAATTAAACTTCAG
68527915 CCTA
1 CCTA
68527919 TTTTCTTATG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (55 bp):
CCTAAACTTTTGCATATTTACACTTTTGCCCTAATGCTCGTAAATTAAACTTCAG
Found at i:68530954 original size:63 final size:65
Alignment explanation
Indices: 68530850--68531052 Score: 193
Period size: 66 Copynumber: 3.1 Consensus size: 65
68530840 CATTATGTGT
* *
68530850 ACAAGAGAGCTACGAGACATTATGAC-GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCAT
1 ACAAGAGAGCTACGAG--A-TA-AACTGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCAT
68530914 GTAG
62 GTAG
* * * * *
68530918 ACAAGAGAGCTACGA-ATATA-TGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGATAAACTGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATG
68530981 TAG
63 TAG
* * * *
68530984 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATAGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATAAACTGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
68531046 TACAAGA
1 -ACAAGA
68531053 AAGCCGAACT
Statistics
Matches: 113, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
62 1 0.01
63 39 0.35
64 3 0.03
65 3 0.03
66 46 0.41
67 4 0.04
68 17 0.15
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACGAGATAAACTGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:68534295 original size:27 final size:27
Alignment explanation
Indices: 68534265--68534598 Score: 335
Period size: 27 Copynumber: 12.6 Consensus size: 27
68534255 TTAGTTTACC
68534265 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
68534292 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68534319 AAATCACCAAAATA-CCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
68534345 AAATTACCAAAATACCCTTGATTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
68534372 AAATTACCAAAATACCCCTGGTTTGT-
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
68534398 --A--ACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
68534421 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
68534448 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
68534475 AAATTATCAAAATA-CCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
68534501 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
68534528 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** **
68534555 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
68534582 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
68534599 TTAATTTACA
Statistics
Matches: 255, Mismatches: 43, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
22 17 0.07
24 1 0.00
25 1 0.00
26 51 0.20
27 183 0.72
28 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:68534343 original size:53 final size:54
Alignment explanation
Indices: 68534265--68534517 Score: 358
Period size: 53 Copynumber: 4.8 Consensus size: 54
68534255 TTAGTTTACC
*
68534265 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
68534319 AAATCACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
68534372 AAATTACCAAAATACCCCTGGTTTGT---A--ACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
68534421 AAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
68534475 AAATTATCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
68534518 CTAATTTGTG
Statistics
Matches: 176, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
49 43 0.24
51 1 0.01
52 1 0.01
53 76 0.43
54 55 0.31
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:68534498 original size:102 final size:102
Alignment explanation
Indices: 68534259--68534501 Score: 326
Period size: 103 Copynumber: 2.3 Consensus size: 102
68534249 AATACTTTAG
* *
68534259 TTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATC
1 TTTACAAAATTACCAAAATACCCCTAGTTTGT---A--ACTAAAATACCCTTGGTTTATAAAATC
* *
68534324 ACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTGA
61 ACCAAAATACCCTGGCTTGTAAAATTACCAAAATACCCCTGA
* * *
68534366 TTTACAAAATTACCAAAATACCCCTGGTTTGTAACTAAAATACCCTTTGTTTATAAAATTACCAA
1 TTTACAAAATTACCAAAATACCCCTAGTTTGTAACTAAAATACCCTTGGTTTATAAAATCACCAA
*
68534431 AATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGG
66 AATA-CCCTGGCTTGTAAAATTACCAAAATACCCCTGA
** *
68534469 TTTGTAAAATTATCAAAATA-CCCTAGTTTGTAA
1 TTTACAAAATTACCAAAATACCCCTAGTTTGTAA
68534502 AATTACCAAA
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
102 46 0.37
103 47 0.38
104 1 0.01
107 31 0.25
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (102 bp):
TTTACAAAATTACCAAAATACCCCTAGTTTGTAACTAAAATACCCTTGGTTTATAAAATCACCAA
AATACCCTGGCTTGTAAAATTACCAAAATACCCCTGA
Found at i:68534518 original size:53 final size:53
Alignment explanation
Indices: 68534265--68534599 Score: 333
Period size: 53 Copynumber: 6.3 Consensus size: 53
68534255 TTAGTTTACC
* * *
68534265 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTATA
* * *
68534319 AAATCACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTACA
1 AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTATA
* *
68534372 AAATTACCAAAATACCCCTGGTTTGT---A--ACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCC-CTGATTTATA
* * *
68534421 AAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTATA
* * * * *
68534475 AAATTATCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTATA
** *** ** * *
68534528 AAATTACTGAAATACCCTCGACCTGTAAAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCCT-GATTTATA
*
68534582 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
68534600 TAATTTACAG
Statistics
Matches: 239, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
49 41 0.17
50 3 0.01
51 1 0.00
52 1 0.00
53 104 0.44
54 89 0.37
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTATA
Found at i:68534555 original size:156 final size:156
Alignment explanation
Indices: 68534265--68534555 Score: 413
Period size: 156 Copynumber: 1.9 Consensus size: 156
68534255 TTAGTTTACC
* * *
68534265 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAA
* * * ***
68534330 ATACCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCCTGGTT
66 ATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACCAAAATACCCCTGACC
68534395 TGTAACTAAAATACCCTTTGTTTATA
131 TGTAACTAAAATACCCTTTGTTTATA
* * *
68534421 AAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAA
*** **
68534486 ATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCCTCGAC
66 ATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACCAAAATACCCCT-GAC
68534550 CTGTAA
130 CTGTAA
68534556 AATTATTAAA
Statistics
Matches: 117, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
155 4 0.03
156 113 0.97
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (156 bp):
AAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGGTTTATAAAATCACCAAA
ATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACCAAAATACCCCTGACC
TGTAACTAAAATACCCTTTGTTTATA
Found at i:68534674 original size:27 final size:27
Alignment explanation
Indices: 68534637--68534857 Score: 275
Period size: 27 Copynumber: 8.3 Consensus size: 27
68534627 CGATTGACAA
* *
68534637 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
68534664 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
68534691 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
68534718 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
68534745 AATTATCGCAATA-CCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
68534771 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
68534798 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
68534825 AATTACTGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
68534851 AATTACC
1 AATTACC
68534858 ATTTTGCCCC
Statistics
Matches: 171, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 38 0.22
27 133 0.78
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:68534794 original size:80 final size:81
Alignment explanation
Indices: 68534637--68534839 Score: 282
Period size: 80 Copynumber: 2.5 Consensus size: 81
68534627 CGATTGACAA
* * *
68534637 AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAA
68534702 TACCCCTATAGGGTAG
66 TACCCCTATAGGGTAG
* * * * *
68534718 AATTACCGAAATACCCCTATAGGGTAGAATTATCGCAATA-CCCTGTAGGATAGAATTATCGAAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAA
*
68534782 TACCCCTGTAGGGTAG
66 TACCCCTATAGGGTAG
* * * *
68534798 AATTACTAAAATACCCCTGTAGGGTGGAATTACTGAGATACC
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
68534840 TTGTGGGGTA
Statistics
Matches: 104, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
80 69 0.66
81 35 0.34
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (81 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAA
TACCCCTATAGGGTAG
Found at i:68535336 original size:22 final size:22
Alignment explanation
Indices: 68535284--68535348 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
68535274 TTAAAGCCTT
* *
68535284 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
68535306 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
68535328 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
68535349 ACATATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:68535536 original size:27 final size:27
Alignment explanation
Indices: 68535506--68535607 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
68535496 ATTCTGTTAA
* *
68535506 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
68535533 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
68535560 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
68535587 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
68535608 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 52 0.80
28 6 0.09
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:68535782 original size:31 final size:31
Alignment explanation
Indices: 68535744--68535822 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
68535734 TTGCATTCAC
* * *
68535744 ATTCTAATTTTGATTCTGTTACCTGATACTA
1 ATTCTAATTCTGATTCTGTCACCTAATACTA
* *
68535775 ATTCTAATTCTGATTCTGTCACCTAATTCTG
1 ATTCTAATTCTGATTCTGTCACCTAATACTA
*
68535806 ATTCTGATTCTGATTCT
1 ATTCTAATTCTGATTCT
68535823 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.48
Consensus pattern (31 bp):
ATTCTAATTCTGATTCTGTCACCTAATACTA
Found at i:68541912 original size:49 final size:49
Alignment explanation
Indices: 68541847--68542054 Score: 389
Period size: 49 Copynumber: 4.2 Consensus size: 49
68541837 AATATGTATG
*
68541847 AGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
68541896 ATTGTGTATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68541945 AGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68541994 AGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68542043 AGTGTGTATATG
1 AGTGTGTATATG
68542055 CGATGAATGT
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 155 1.00
ACGTcount: A:0.29, C:0.08, G:0.31, T:0.32
Consensus pattern (49 bp):
AGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:68542060 original size:74 final size:74
Alignment explanation
Indices: 68541982--68542128 Score: 285
Period size: 74 Copynumber: 2.0 Consensus size: 74
68541972 TGGCCGATGT
*
68541982 GATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
68542047 TGTATATGC
66 TGTATATGC
68542056 GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
68542121 TGTATATG
66 TGTATATG
68542129 TGTGATAAGG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.31
Consensus pattern (74 bp):
GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TGTATATGC
Found at i:68542065 original size:25 final size:25
Alignment explanation
Indices: 68542031--68542081 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
68542021 TGGCCGATGT
68542031 GATGAATGTGAAAGTGTGTATATGC
1 GATGAATGTGAAAGTGTGTATATGC
68542056 GATGAATGTGAAAGTGTGTATATGC
1 GATGAATGTGAAAGTGTGTATATGC
68542081 G
1 G
68542082 TGATAAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.33, T:0.31
Consensus pattern (25 bp):
GATGAATGTGAAAGTGTGTATATGC
Found at i:68542074 original size:123 final size:123
Alignment explanation
Indices: 68541933--68542176 Score: 479
Period size: 123 Copynumber: 2.0 Consensus size: 123
68541923 TGGCCGATGT
*
68541933 GATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
68541998 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGC
66 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGC
68542056 GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
68542121 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATAT
66 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATAT
68542177 ATGTGATAAG
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.30, C:0.07, G:0.32, T:0.31
Consensus pattern (123 bp):
GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGC
Found at i:68542113 original size:49 final size:49
Alignment explanation
Indices: 68542056--68542225 Score: 286
Period size: 49 Copynumber: 3.5 Consensus size: 49
68542046 GTGTATATGC
*
68542056 GATGAATGTGAAAGTGTGTATATGCGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGT
68542105 GATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGT
* * *
68542154 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAACGT
1 GATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGT
* *
68542203 GATGAATATGAAAGTGTATATAT
1 GATGAATGTGAAAGTGTGTATAT
68542226 ATATGGGGCA
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 115 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTGTATATGTGTGATAAGGCCTAATGGCCGATGT
Found at i:68542170 original size:172 final size:172
Alignment explanation
Indices: 68541884--68542225 Score: 614
Period size: 172 Copynumber: 2.0 Consensus size: 172
68541874 TGGCCGATGT
*
68541884 GATGAATGTGAAATTGTGTATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTGTATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
68541949 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGTGATAA
66 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
* * * *
68542014 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGC
131 GGCCTAATGGCCAACGTGATGAATATGAAAGTGTATATATGC
68542056 GATGAATGTGAAAGTGTGTATATGC-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GATGAATGTGAAAGTGTGTATAT-CTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
68542120 GTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATA
65 GTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATA
68542185 AGGCCTAATGGCCAACGTGATGAATATGAAAGTGTATATAT
130 AGGCCTAATGGCCAACGTGATGAATATGAAAGTGTATATAT
68542226 ATATGGGGCA
Statistics
Matches: 163, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
172 162 0.99
173 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (172 bp):
GATGAATGTGAAAGTGTGTATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
GGCCTAATGGCCAACGTGATGAATATGAAAGTGTATATATGC
Found at i:68542351 original size:37 final size:36
Alignment explanation
Indices: 68542296--68542382 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
68542286 AACTTGGAAA
68542296 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
68542334 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
* *
68542371 TTTATCCGGGTA
1 TATGTCCGGGTA
68542383 AGACTTCGCA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:68550805 original size:75 final size:74
Alignment explanation
Indices: 68550669--68550806 Score: 215
Period size: 75 Copynumber: 1.9 Consensus size: 74
68550659 AATTGAAAGA
**
68550669 GTTGAAATCTCAATTGAAGAGTTAACAGATAGAGGTTTTGGACAATCTAATTTTTTGCCCTGGTG
1 GTTGAAATCTCAATTGAAGAGTTAACAGATAGAGGTTTTGGACAATCTAATTTTTCACCCTGGTG
68550734 TGCACCAGT
66 TGCACCAGT
* *
68550743 GTTGAAATCTCAGTTGCAAGAGTTAACAGATAGAGGTTTTGTA-AGATCTAATTTTTCACCCTGG
1 GTTGAAATCTCAATTG-AAGAGTTAACAGATAGAGGTTTTGGACA-ATCTAATTTTTCACCCTGG
68550807 GATAAAGTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
74 16 0.28
75 42 0.72
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (74 bp):
GTTGAAATCTCAATTGAAGAGTTAACAGATAGAGGTTTTGGACAATCTAATTTTTCACCCTGGTG
TGCACCAGT
Found at i:68554739 original size:46 final size:45
Alignment explanation
Indices: 68554672--68554847 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
68554662 TATTTGGGCA
* *
68554672 TCCGAGCACGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
68554718 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
68554763 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGTGAATG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
68554811 CCCAAGATCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68554848 GCGAGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:68554827 original size:93 final size:93
Alignment explanation
Indices: 68554668--68554839 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
68554658 AGGATATTTG
* * * * *
68554668 GGCATCCGAGCACGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCAAGATCGTTGAG
68554733 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
68554761 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGTGAATGCCCAAGATCGTTGAG
1 GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCAAGATCGTTGAG
68554826 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68554840 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCACGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAATGCCCAAGATCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68557648 original size:57 final size:57
Alignment explanation
Indices: 68557560--68557675 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
68557550 CTTCGAGAAG
*
68557560 TTAGATTCTTGGGTCATATAGTTTCGAGTGATGGTATACGGGTTGATCCCAGTAAAA
1 TTAGATTCATGGGTCATATAGTTTCGAGTGATGGTATACGGGTTGATCCCAGTAAAA
68557617 TTAGATTCATGGGTCATATAGTTTCGAGTGATGGTATACGGGTTGATCCCAGTAAAA
1 TTAGATTCATGGGTCATATAGTTTCGAGTGATGGTATACGGGTTGATCCCAGTAAAA
68557674 TT
1 TT
68557676 TCAGCTATTG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (57 bp):
TTAGATTCATGGGTCATATAGTTTCGAGTGATGGTATACGGGTTGATCCCAGTAAAA
Found at i:68559969 original size:48 final size:49
Alignment explanation
Indices: 68559893--68560026 Score: 177
Period size: 48 Copynumber: 2.8 Consensus size: 49
68559883 TACCATGGTT
*
68559893 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGA-TTACACATACTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTACACATACTG
* * * * *
68559941 ATACATGTAACGTGGTGGTAAATGGATATGCCAC-AGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTACACATACTG
*
68559989 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACG-GTTA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTA
68560027 TACGTGTAAC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
47 29 0.39
48 45 0.61
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (49 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTACACATACTG
Found at i:68560066 original size:38 final size:38
Alignment explanation
Indices: 68559995--68560067 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
68559985 ATTGATTCAT
*
68559995 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCAAGGTTATACGTG
* *
68560033 TAACGTGGTGCTAAGTGGATATGCCAAGTTTATAC
1 TAACGTGGTGCTAAGTGGATATACCAAGGTTATAC
68560068 ATGTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCAAGGTTATACGTG
Found at i:68562639 original size:40 final size:40
Alignment explanation
Indices: 68562556--68562776 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
68562546 ACCCAAGTAT
** * *
68562556 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
68562594 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
68562634 CTTCGGGACTTAGCCCGGATATAGTCGCTGGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
68562674 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
68562714 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
68562755 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
68562777 CATTCGAATA
Statistics
Matches: 152, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 96 0.63
41 29 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:68573006 original size:40 final size:40
Alignment explanation
Indices: 68572962--68573144 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
68572952 GCTACTCGTT
*
68572962 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
68573002 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGAA
1 CAAATGCCTTTGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
68573042 CCAATGCC-TTCGGCCTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTTGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
68573081 CAAATGCC-TTCGGATCTTAG-TCGGATATAGTCACTTAGCA
1 CAAATGCCTTTGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
68573121 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTTGGGACTTAGCCCGG
68573145 ACATCATTCG
Statistics
Matches: 115, Mismatches: 20, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
39 52 0.45
40 61 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68573076 original size:39 final size:39
Alignment explanation
Indices: 68572990--68573099 Score: 157
Period size: 39 Copynumber: 2.8 Consensus size: 39
68572980 AGCCCGGTTA
*
68572990 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGAAT
* * * *
68573030 TAGTAACTCGAACCAATGCCTTCGGCCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAAT
68573069 TAGTAACTCGCACAAATGCCTTCGGATCTTA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTA
68573100 GTCGGATATA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 36 0.59
40 25 0.41
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAAT
Found at i:68573139 original size:79 final size:81
Alignment explanation
Indices: 68572962--68573145 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
68572952 GCTACTCGTT
* * *
68572962 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
68573026 GATTTAGTAACTCGAAC
65 GATATAGTAACTAGAAC
* * **
68573043 CAATGCCTTC-GGCCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-AGTCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
68573104 GATATAGTCACTTAGCA-
65 GATATAGTAAC-TAGAAC
68573121 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
68573146 CATCATTCGA
Statistics
Matches: 86, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
78 24 0.28
79 53 0.62
80 6 0.07
81 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGAAC
Found at i:68578705 original size:24 final size:24
Alignment explanation
Indices: 68578625--68578714 Score: 90
Period size: 24 Copynumber: 3.8 Consensus size: 24
68578615 TCTATGATGT
* **
68578625 CTTTGTGGCATATTTTGTAAACAC
1 CTTTGTGGCATATTCTGTAAATGC
* *
68578649 CTTTATGGCATATTTTGTAAATGC
1 CTTTGTGGCATATTCTGTAAATGC
* ** *
68578673 CCTACTGGCGTATTCTGTAAATGC
1 CTTTGTGGCATATTCTGTAAATGC
*
68578697 CTTTGTGGCTTATTCTGT
1 CTTTGTGGCATATTCTGT
68578715 GTTACCTTTA
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (24 bp):
CTTTGTGGCATATTCTGTAAATGC
Found at i:68581073 original size:21 final size:21
Alignment explanation
Indices: 68581026--68581073 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
68581016 TCCTAGGGTG
*
68581026 TAAATTGAATTCAATTGAATAT
1 TAAA-TGAATTAAATTGAATAT
*
68581048 GAAATGAATTAAATTG-ATGAT
1 TAAATGAATTAAATTGAAT-AT
68581069 TAAAT
1 TAAAT
68581074 TCATTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 2 0.09
21 17 0.77
22 3 0.14
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.38
Consensus pattern (21 bp):
TAAATGAATTAAATTGAATAT
Found at i:68581224 original size:22 final size:21
Alignment explanation
Indices: 68581199--68581239 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
68581189 ATTGTGTATA
*
68581199 GTTATATGCTTGTATTGAATAT
1 GTTATATGATTGTA-TGAATAT
*
68581221 GTTATGTGATTGTATGAAT
1 GTTATATGATTGTATGAAT
68581240 TATAAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (21 bp):
GTTATATGATTGTATGAATAT
Found at i:68582523 original size:46 final size:45
Alignment explanation
Indices: 68582455--68582673 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 45
68582445 TGATATGTGT
*
68582455 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATA-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACAATATACA-A
* * * * *
68582501 CCTAGTGTAAGACATATCTGGGACATGCATCAGCATTAAGATGA-AA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCA-CAATAT-ACAA
* * * ** *
68582547 GGTTGTGTAAGACATGTTTGGGACATGCATCGGCATTA-AGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACAATATAC-A-A
*
68582593 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CAC-A-ATATACAA
*
68582641 GCTAGTGTAAGACCTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCG
68582674 ACTTTGATGT
Statistics
Matches: 141, Mismatches: 22, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 5 0.04
46 94 0.67
47 3 0.02
48 26 0.18
49 8 0.06
50 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACAATATACAA
Found at i:68582707 original size:48 final size:48
Alignment explanation
Indices: 68582455--68582713 Score: 182
Period size: 46 Copynumber: 5.5 Consensus size: 48
68582445 TGATATGTGT
*
68582455 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATTATA-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGA-TATACA-A
* * * ** *
68582501 CCTAGTGTAAGACATATCTGGGACATGCATCAG-CATTAAGAT-GA-AA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGAC-TCGAGATATACAA
* * * ** ** *
68582547 GGTTGTGTAAGACATGTTTGGGACATGCATCGG-CATTAAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGAC-TCGAGATATACAA
*
68582593 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATATACAA
* ** * * *
68582641 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-GACT-TTGATGTGCTA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGACTCGAGATATACAA
68582688 GCTAGTGTAAGACAATGTCTGGGACA
1 GCTAGTGTAAGAC-ATGTCTGGGACA
68582714 CATCTTATCC
Statistics
Matches: 175, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
46 104 0.59
47 23 0.13
48 41 0.23
49 7 0.04
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATATACAA
Found at i:68589747 original size:18 final size:19
Alignment explanation
Indices: 68589709--68589749 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
68589699 AAAAAAAAGG
68589709 AAATACGAAATTATAAAAA
1 AAATACGAAATTATAAAAA
*
68589728 AAATACGAAGTTATAAAAA
1 AAATACGAAATTATAAAAA
68589747 AAA
1 AAA
68589750 GTGAAGTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.68, C:0.05, G:0.07, T:0.20
Consensus pattern (19 bp):
AAATACGAAATTATAAAAA
Found at i:68592932 original size:20 final size:21
Alignment explanation
Indices: 68592885--68592932 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
68592875 ATTTTGTCCA
*
68592885 AATTA-GTTAAGTTGTTATTT
1 AATTATGTTAAGTTGCTATTT
*
68592905 AAGT-TGTT-AGTTGCTATTT
1 AATTATGTTAAGTTGCTATTT
68592924 AATTATGTT
1 AATTATGTT
68592933 TAAATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.54
Consensus pattern (21 bp):
AATTATGTTAAGTTGCTATTT
Found at i:68599950 original size:39 final size:39
Alignment explanation
Indices: 68599905--68600025 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
68599895 AAGCAAGACA
*
68599905 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68599944 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
68599983 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGTTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68600022 CTGG
1 CTGG
68600026 TAACATAATT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68605309 original size:40 final size:39
Alignment explanation
Indices: 68605264--68605393 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
68605254 CGGAATATAA
68605264 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
68605304 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68605344 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
68605384 CCGGATATAA
1 CCGGATATAA
68605394 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:68605408 original size:40 final size:40
Alignment explanation
Indices: 68605280--68605431 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
68605270 ATAACCATGT
* * *
68605280 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
68605320 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68605360 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68605400 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
68605432 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:68605414 original size:80 final size:80
Alignment explanation
Indices: 68605280--68605429 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
68605270 ATAACCATGT
*
68605280 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
68605344 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
68605360 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
68605423 CCCGGAT
64 CCCGGAT
68605430 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:68609386 original size:39 final size:39
Alignment explanation
Indices: 68609341--68609461 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
68609331 AAGCAAGACA
*
68609341 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68609380 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
68609419 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGTTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68609458 CTGG
1 CTGG
68609462 TAACATAATT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68613138 original size:27 final size:27
Alignment explanation
Indices: 68613070--68613140 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
68613060 CGACTTGTAA
* *
68613070 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
68613097 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
68613124 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
68613141 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:68613147 original size:27 final size:27
Alignment explanation
Indices: 68613124--68613247 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
68613114 CAATTTACAG
68613124 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
68613151 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
68613178 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
68613205 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
68613232 AATTACTAAAATACCC
1 AATTACCAAAATACCC
68613248 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:68613166 original size:54 final size:53
Alignment explanation
Indices: 68613108--68613247 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
68613098 ATTACCGTTT
68613108 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
68613162 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
68613216 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
68613248 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:68613259 original size:81 final size:81
Alignment explanation
Indices: 68613124--68613276 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
68613114 CAATTTACAG
* **
68613124 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
68613189 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
68613205 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
68613268 AATACCCTT
64 AATACCCTT
68613277 GTAGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:68613260 original size:27 final size:27
Alignment explanation
Indices: 68613230--68613291 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
68613220 CATGGTTTGA
68613230 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* *
68613257 AAAATTACTGAAATACCCTTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
68613284 AAAATTAC
1 AAAATTAC
68613292 CATTTTGCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:68613260 original size:54 final size:54
Alignment explanation
Indices: 68613124--68613274 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
68613114 CAATTTACAG
* ** * * *
68613124 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
68613178 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
68613232 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
68613275 TTGTAGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:68613944 original size:28 final size:28
Alignment explanation
Indices: 68613911--68614007 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
68613901 GCGTAGATCA
68613911 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
68613939 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
68613967 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
68613995 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
68614008 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:68617287 original size:27 final size:27
Alignment explanation
Indices: 68617219--68617289 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
68617209 CGACTTGTAA
* *
68617219 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
68617246 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
68617273 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
68617290 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:68617296 original size:27 final size:27
Alignment explanation
Indices: 68617273--68617345 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
68617263 CAATTTACAG
*
68617273 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTATAA
*
68617300 AATCACCAAAATACCCCTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTATAA
*
68617327 AATTACTAAAATACCCCTG
1 AATTACCAAAATACCCCTG
68617346 TAGGGTAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTATAA
Found at i:68617354 original size:27 final size:27
Alignment explanation
Indices: 68617324--68617386 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
68617314 CCCTGGTTTA
68617324 TAAAATTACTAAAATACCCCTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
* *
68617351 TAAAATTACTGAAATACCCTTGTAGGG
1 TAAAATTACTAAAATACCCCTGTAGGG
68617378 TAAAATTAC
1 TAAAATTAC
68617387 CATTTTGCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (27 bp):
TAAAATTACTAAAATACCCCTGTAGGG
Found at i:68618038 original size:27 final size:27
Alignment explanation
Indices: 68618006--68618087 Score: 146
Period size: 27 Copynumber: 3.0 Consensus size: 27
68617996 GCGTAGATCA
68618006 CGAAATTACCCTAAAGAGCAAAATTAC
1 CGAAATTACCCTAAAGAGCAAAATTAC
*
68618033 TGAAATTACCCTAAAGAGCAAAATTAC
1 CGAAATTACCCTAAAGAGCAAAATTAC
*
68618060 CGAAATTACCCTAAATAGCAAAATTAC
1 CGAAATTACCCTAAAGAGCAAAATTAC
68618087 C
1 C
68618088 AATATACCCC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.48, C:0.22, G:0.10, T:0.21
Consensus pattern (27 bp):
CGAAATTACCCTAAAGAGCAAAATTAC
Found at i:68621297 original size:21 final size:21
Alignment explanation
Indices: 68621271--68621314 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
68621261 TAGGTGATTC
68621271 AAATGTATAAATATATGTTTG
1 AAATGTATAAATATATGTTTG
68621292 AAATGTATAAATATATGTTTG
1 AAATGTATAAATATATGTTTG
68621313 AA
1 AA
68621315 TGTGTATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGTATAAATATATGTTTG
Found at i:68630634 original size:28 final size:28
Alignment explanation
Indices: 68630593--68630703 Score: 145
Period size: 28 Copynumber: 4.0 Consensus size: 28
68630583 GAAAGCATGA
68630593 ATATGAATGTGATTTGGGCCTAATGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGC
* *
68630621 TTATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAAT-GGGC
*
68630650 ATACG-ATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGG-C
* *
68630678 ATATGAATGAGA-TTGGGCCTAGTGGG
1 ATATGAATGTGATTTGGGCCTAATGGG
68630704 TTGTATGCAT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 59 0.82
29 11 0.15
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.31
Consensus pattern (28 bp):
ATATGAATGTGATTTGGGCCTAATGGGC
Found at i:68631384 original size:15 final size:14
Alignment explanation
Indices: 68631364--68631393 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
68631354 TATTGGGGGG
68631364 TTGCATTGCATTGTA
1 TTGCATTGCA-TGTA
68631379 TTGCATTGCATGTA
1 TTGCATTGCATGTA
68631393 T
1 T
68631394 GATTTTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.47
Consensus pattern (14 bp):
TTGCATTGCATGTA
Found at i:68633876 original size:46 final size:46
Alignment explanation
Indices: 68633823--68634087 Score: 238
Period size: 46 Copynumber: 5.7 Consensus size: 46
68633813 GGTTGAGCAG
*
68633823 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGT
* * * * *
68633869 CCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG--T
* * *
68633916 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGT
* * * * *
68633962 CCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG--T
* *
68634009 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGT
* *
68634054 CCTGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68634088 GGGGCGGGTT
Statistics
Matches: 173, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
43 9 0.05
45 10 0.06
46 83 0.48
47 55 0.32
48 8 0.05
50 8 0.05
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGT
Found at i:68633942 original size:47 final size:47
Alignment explanation
Indices: 68633872--68634036 Score: 205
Period size: 47 Copynumber: 3.5 Consensus size: 47
68633862 CAAATGTCCA
68633872 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
* * * * * *
68633919 AACTCGTTGAGTTGAGTCTGAGTTCACT--TATG-GA-T-GCGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA--TCCG
68633965 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
68634012 AACTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
68634037 ACTTATGGAT
Statistics
Matches: 97, Mismatches: 12, Indels: 18
0.76 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 30 0.31
47 55 0.57
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCG
Found at i:68633982 original size:93 final size:93
Alignment explanation
Indices: 68633823--68634082 Score: 450
Period size: 93 Copynumber: 2.8 Consensus size: 93
68633813 GGTTGAGCAG
*
68633823 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGTTGAG
68633888 TCCGAGTTCGTGAAATGTAACTAGGCAT
66 TCCGAGTTCGTGAAATGTAACTAGGCAT
*
68633916 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGTTGAG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGTTGAG
68633981 TCCGAGTTCGTGAAATGTAACTAGGCAT
66 TCCGAGTTCGTGAAATGTAACTAGGCAT
* * * *
68634009 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-AAACTCGTTGAGTTGA
68634073 GTCCGAGTTC
65 GTCCGAGTTC
68634083 ACTTAGGGGC
Statistics
Matches: 159, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
92 2 0.01
93 157 0.99
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGTTGAG
TCCGAGTTCGTGAAATGTAACTAGGCAT
Found at i:68655420 original size:49 final size:49
Alignment explanation
Indices: 68655366--68655596 Score: 257
Period size: 49 Copynumber: 4.7 Consensus size: 49
68655356 CTGGTACGCA
* * * *
68655366 TAGTAGCCTGCACATAGTACTATACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
* * *
68655415 TAGTAGCCTGTACTTAGTACTACACACGTGACCAATTATCCGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
* * ** *
68655464 TAGTACCCTGCACTTAGTACTACACAC-TGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGATACACG
* * * * * *
68655513 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCCGATACACG
*
68655564 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
68655597 TCACAATAGA
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
48 5 0.03
49 106 0.68
50 4 0.03
51 39 0.25
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACACG
Found at i:68657621 original size:2 final size:2
Alignment explanation
Indices: 68657614--68657641 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
68657604 GCTCTTGCAC
68657614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68657642 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68658530 original size:40 final size:40
Alignment explanation
Indices: 68658356--68658541 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
68658346 TCGAATGATG
* * *
68658356 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
68658396 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68658436 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
68658476 TCCGAGTTAAGTCCCAAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
68658517 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68658542 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.91
41 10 0.08
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68661037 original size:15 final size:15
Alignment explanation
Indices: 68660985--68661053 Score: 72
Period size: 15 Copynumber: 4.7 Consensus size: 15
68660975 TAAAGATAAT
*
68660985 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
68660999 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
68661014 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
*
68661029 AAGAAACCCAGAGTA
1 AAGAAACCCAGAATA
68661044 AAGAAACCCA
1 AAGAAACCCA
68661054 AGATACGATA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
14 11 0.23
15 33 0.70
16 3 0.06
ACGTcount: A:0.59, C:0.19, G:0.14, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:68661051 original size:30 final size:31
Alignment explanation
Indices: 68660985--68661053 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
68660975 TAAAGATAAT
* *
68660985 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAACCCAAGATAG
68661015 AA-AAACCCAGAATAAAGAAACCC-AGAGTA-
1 AAGAAACCCAGAATAAAGAAACCCAAGA-TAG
68661044 AAGAAACCCA
1 AAGAAACCCA
68661054 AGATACGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.59, C:0.19, G:0.14, T:0.07
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAACCCAAGATAG
Found at i:68664058 original size:49 final size:49
Alignment explanation
Indices: 68663994--68664238 Score: 175
Period size: 49 Copynumber: 4.9 Consensus size: 49
68663984 TAGCCAAAGC
* * *
68663994 TATCTGGTACGCATAGTAGCCTGCACACAGCACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACACAGCACTACACACGCGACCAAT
** * *
68664043 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACACAGCACTACACACGCGACCAAT
* *** * * *
68664092 TATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACACAGCACTACACACGCGACC-AAT
* * * * * ** * * *
68664142 CATCTGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACACAGCACTACACACGCGA-C-CAAT
* * * * ** * *
68664193 TTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACACAGCACTACACACGCGACC
68664239 TCACAATAGA
Statistics
Matches: 166, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 87 0.52
50 42 0.25
51 36 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACACAGCACTACACACGCGACCAAT
Found at i:68664172 original size:50 final size:49
Alignment explanation
Indices: 68664007--68664185 Score: 214
Period size: 49 Copynumber: 3.6 Consensus size: 49
68663997 CTGGTACGCA
** * * * ** * *
68664007 TAGTAGCCTGCACACAGCACTACACATGCGACCAATTATCCGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
** *
68664056 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
* *
68664105 TAGTAGCCTGCATTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
*
68664155 TAGTAGCCTGTACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
68664186 TCACAGTTTT
Statistics
Matches: 116, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 75 0.65
50 41 0.35
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:68664175 original size:99 final size:101
Alignment explanation
Indices: 68664050--68664231 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 101
68664040 AATTATCCGG
*
68664050 TACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACGTAGTAGCC
1 TACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGTAGCC
* *
68664113 TGCATTTAGTACTACACACGTGACCTAACCATCTGA
66 TACACTTAGTACTACACACGTGACCTAACCATCTGA
* * * * * *
68664149 TACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCC
1 TACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGTAGCC
68664214 TACACTTAGTACTACACA
66 TACACTTAGTACTACACA
68664232 TGCGACCTCA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 35 0.49
100 1 0.01
101 36 0.50
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (101 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTATCCGGTACACATAGTAGCC
TACACTTAGTACTACACACGTGACCTAACCATCTGA
Found at i:68684913 original size:25 final size:25
Alignment explanation
Indices: 68684884--68684931 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68684874 TTATAATATG
* * *
68684884 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68684909 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68684932 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68684993 original size:20 final size:20
Alignment explanation
Indices: 68684968--68685030 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
68684958 ATTTTGATAA
*
68684968 ACATGATATGTCTGATATGC
1 ACATGATATGTATGATATGC
*
68684988 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
68685008 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68685028 ACA
1 ACA
68685031 CAAGATGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68685118 original size:24 final size:24
Alignment explanation
Indices: 68685084--68685227 Score: 229
Period size: 24 Copynumber: 6.0 Consensus size: 24
68685074 GAGGAAGTGC
68685084 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
68685108 AAAAGGCCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68685132 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68685156 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68685180 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
68685204 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68685228 ATGATAAAGC
Statistics
Matches: 113, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
23 6 0.05
24 89 0.79
25 18 0.16
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68685455 original size:31 final size:31
Alignment explanation
Indices: 68685420--68685483 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
68685410 CGTTTACAGT
*
68685420 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
** *
68685451 AAAGGCTTCAGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
68685482 AA
1 AA
68685484 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:68697009 original size:29 final size:28
Alignment explanation
Indices: 68696977--68697079 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
68696967 GGGACGAGAT
* *
68696977 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
68697006 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
68697035 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
68697064 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68697080 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:68703761 original size:25 final size:25
Alignment explanation
Indices: 68703732--68703779 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68703722 TTATAATATG
* * *
68703732 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68703757 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68703780 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68703830 original size:9 final size:9
Alignment explanation
Indices: 68703818--68703874 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
68703808 TTTGATTAAC
68703818 ATGATATGT
1 ATGATATGT
*
68703827 ATGATATGCAC
1 ATGATATG--T
*
68703838 ATGACATGT
1 ATGATATGT
68703847 ATGATATGCAT
1 ATGATATG--T
68703858 ATGATATGT
1 ATGATATGT
68703867 ATGATATG
1 ATGATATG
68703875 CACACGAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:68703841 original size:20 final size:20
Alignment explanation
Indices: 68703816--68703878 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
68703806 ATTTTGATTA
68703816 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68703836 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68703856 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68703876 ACA
1 ACA
68703879 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68703991 original size:23 final size:24
Alignment explanation
Indices: 68703932--68704051 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
68703922 GAGGAAGTGC
68703932 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68703956 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68703980 AAAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68704003 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
68704028 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68704052 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 25 0.28
24 34 0.38
25 25 0.28
26 5 0.06
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68704279 original size:31 final size:31
Alignment explanation
Indices: 68704244--68704307 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
68704234 CGTTTACAGT
68704244 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* ** *
68704275 AAAGGCTTTGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68704306 AA
1 AA
68704308 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Done.