Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 229 of 328
Found at i:68705449 original size:42 final size:42
Alignment explanation
Indices: 68705402--68705483 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
68705392 AATATATATT
** * * *
68705402 TATATAGCTGAAGTTATCTCGATCTAGCACATTAAGTGCAAA
1 TATATAGCCAAAGCTATCTCGACCTAGCACACTAAGTGCAAA
*
68705444 TATATAGCCAAAGCTATCTCGACCTCGCACACTAAGTGCA
1 TATATAGCCAAAGCTATCTCGACCTAGCACACTAAGTGCA
68705484 CATAATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (42 bp):
TATATAGCCAAAGCTATCTCGACCTAGCACACTAAGTGCAAA
Found at i:68708517 original size:41 final size:42
Alignment explanation
Indices: 68708352--68708644 Score: 153
Period size: 48 Copynumber: 6.6 Consensus size: 42
68708342 AATACCAAAA
* *
68708352 CCATGTCCTC-GACATGGTCTTACATG-GATCTACATACCGATG
1 CCATGTCC-CAGACATGGTCTTACATGAAATCT-CATATCGATG
* * * * * * *
68708394 CCATATCGCAGATATGATATTATATGAAATCTCATGTCGGTGCTGATG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCA--T--AT-C-GATG
* * *
68708442 CCATGTCCCAGACATGGTCTTACA-CAGGACCTCATATCGATG
1 CCATGTCCCAGACATGGTCTTACATGA-AATCTCATATCGATG
* * *
68708484 -CATGTCCTAGACATGGTCTTACATGAAATCTCATATCAACG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCGATG
* * * *
68708525 CCATATCCCAAATATGGTCTTACATGAAATCACATAACGTGGACGATG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCAT-A--T---CGATG
* * * *
68708573 CCATATCCCAGATATGGTCTTACACTGGCACACATATCAATGTCGATG
1 CCATGTCCCAGACATGGTCTTACA-T-G-A-A-ATCTC-ATATCGATG
*
68708621 CCATGTCCTAGACATGGTCTTACA
1 CCATGTCCCAGACATGGTCTTACA
68708645 CTAGCTCTCA
Statistics
Matches: 189, Mismatches: 39, Indels: 40
0.71 0.15 0.15
Matches are distributed among these distances:
41 34 0.18
42 54 0.29
43 6 0.03
44 2 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 79 0.42
49 1 0.01
50 1 0.01
51 2 0.01
52 1 0.01
53 3 0.02
54 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCGATG
Found at i:68708590 original size:131 final size:136
Alignment explanation
Indices: 68708352--68708644 Score: 332
Period size: 131 Copynumber: 2.2 Consensus size: 136
68708342 AATACCAAAA
* * * * * * *
68708352 CCATGTCCTCGACATGGTCTTACATGGATCTACATACCGATGCCATATCGCAGATATGATATTAT
1 CCATGTCCTAGACATGGTCTTACATGAATCTACATACCAACGCCATATCCCAAATATGATATTAC
* ** *
68708417 ATGAAATCTCATGTCGGTGCTGATGCCATGTCCCAGACATGGTCTTACACAGG-AC-C-TC-ATA
66 ATGAAATCACATAACGGTGCTGATGCCATATCCCAGACATGGTCTTACACAGGCACACATCAATA
68708478 TCGATG
131 TCGATG
* * *
68708484 -CATGTCCTAGACATGGTCTTACATGAAATCT-CATATCAACGCCATATCCCAAATATGGTCTTA
1 CCATGTCCTAGACATGGTCTTACATG-AATCTACATACCAACGCCATATCCCAAATATGATATTA
* *
68708547 CATGAAATCACATAAC-GTGGAC-GATGCCATATCCCAGATATGGTCTTACACTGGCACACATAT
65 CATGAAATCACATAACGGT-G-CTGATGCCATATCCCAGACATGGTCTTACACAGGCACAC--AT
*
68708610 CAATGTCGATG
126 CAATATCGATG
68708621 CCATGTCCTAGACATGGTCTTACA
1 CCATGTCCTAGACATGGTCTTACA
68708645 CTAGCTCTCA
Statistics
Matches: 134, Mismatches: 17, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
130 2 0.01
131 91 0.68
132 7 0.05
133 1 0.01
136 2 0.01
137 8 0.06
138 23 0.17
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (136 bp):
CCATGTCCTAGACATGGTCTTACATGAATCTACATACCAACGCCATATCCCAAATATGATATTAC
ATGAAATCACATAACGGTGCTGATGCCATATCCCAGACATGGTCTTACACAGGCACACATCAATA
TCGATG
Found at i:68713703 original size:39 final size:39
Alignment explanation
Indices: 68713615--68713759 Score: 168
Period size: 39 Copynumber: 3.7 Consensus size: 39
68713605 TGAATGATAC
* * * *
68713615 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TTTATAT
*
68713655 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTTTATAT
** *
68713694 CCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTT-TTATAT
* *
68713733 CC-GGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
68713760 TTGTGGTTAT
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
38 27 0.29
39 38 0.40
40 29 0.31
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTTTATAT
Found at i:68721799 original size:40 final size:40
Alignment explanation
Indices: 68721744--68721911 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
68721734 TGAATGATAC
* *
68721744 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
68721784 CCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
68721824 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
68721864 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
68721904 CC-GGCTAA
1 CCGGGCTAA
68721912 ATTCCGAAGA
Statistics
Matches: 107, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 99 0.93
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:68723392 original size:51 final size:50
Alignment explanation
Indices: 68723330--68723470 Score: 180
Period size: 49 Copynumber: 2.8 Consensus size: 50
68723320 AGCTAGGTCG
*
68723330 CATGTGTAGTACTAAGTGCAGGCTACTATACGTACTC-GATAACTTTAATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATAA--TTAATCA
* * * **
68723381 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATAATTAATCA
*
68723430 CATGTGTAGTACTAAGTGCAGGCTAATATGCGTAC-CAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATA
68723471 GTTTGGCTAC
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
49 41 0.53
50 2 0.03
51 35 0.45
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATAATTAATCA
Found at i:68723440 original size:49 final size:50
Alignment explanation
Indices: 68723325--68723454 Score: 165
Period size: 51 Copynumber: 2.6 Consensus size: 50
68723315 TATGTAGCTA
* *
68723325 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACTCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACTCGATAAC-TT
** * **
68723376 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAA-TT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACTC-GATAACTT
68723425 GGTCACATGTGTAGTACTAAGTGCAGGCTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTA
68723455 ATATGCGTAC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
49 29 0.43
50 2 0.03
51 37 0.54
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACTCGATAACTT
Found at i:68731237 original size:47 final size:47
Alignment explanation
Indices: 68731186--68731318 Score: 191
Period size: 46 Copynumber: 2.9 Consensus size: 47
68731176 GAATTATGAG
68731186 GCATCCGAACTCGTTGAGTTACGTTCCGAGTTCACTTATGGATG-CAA
1 GCATCCGAACTCGTTGAGTTACGTTCCGAGTTCA-TTATGGATGTCAA
** *
68731233 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGTGAA
1 GCATCCGAACTCGTTGAGTTACGTTCCGAGTTCATTATGGATGTCAA
*
68731280 -CA-CCGGAGCTCGTTGAGTTACGTTCCGAGTTCATTATGG
1 GCATCC-GAACTCGTTGAGTTACGTTCCGAGTTCATTATGG
68731319 GTGAGATTAT
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
45 2 0.03
46 42 0.54
47 34 0.44
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTACGTTCCGAGTTCATTATGGATGTCAA
Found at i:68733474 original size:90 final size:90
Alignment explanation
Indices: 68733321--68733487 Score: 298
Period size: 90 Copynumber: 1.9 Consensus size: 90
68733311 TATTCGTCAA
* *
68733321 AATTATTAACATAATTGCATGCTTTACTGTGCATTTGAGCTTGAATTCCATATATTAACTCCCAT
1 AATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
68733386 TATACCTGTTATGCATATTGGTTAG
66 TATACCTGTTATGCATATTGGTTAG
* *
68733411 AATTATTAACATAATTTCATGCATTATTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
1 AATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
68733476 TATACCTGTTAT
66 TATACCTGTTAT
68733488 ATAGCTTAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 73 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (90 bp):
AATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
TATACCTGTTATGCATATTGGTTAG
Found at i:68736678 original size:10 final size:10
Alignment explanation
Indices: 68736663--68736701 Score: 78
Period size: 10 Copynumber: 3.9 Consensus size: 10
68736653 TTTGCTTGCC
68736663 TAATATTTGT
1 TAATATTTGT
68736673 TAATATTTGT
1 TAATATTTGT
68736683 TAATATTTGT
1 TAATATTTGT
68736693 TAATATTTG
1 TAATATTTG
68736702 CTCTAGTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (10 bp):
TAATATTTGT
Found at i:68736939 original size:23 final size:23
Alignment explanation
Indices: 68736909--68736958 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
68736899 GACGTTCCTA
68736909 AGACTGCTTTTAGAATGAGATAC
1 AGACTGCTTTTAGAATGAGATAC
68736932 AGACTGCTTTTAGAATGAGATAC
1 AGACTGCTTTTAGAATGAGATAC
68736955 AGAC
1 AGAC
68736959 ACTATGAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (23 bp):
AGACTGCTTTTAGAATGAGATAC
Found at i:68743238 original size:16 final size:16
Alignment explanation
Indices: 68743217--68743247 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
68743207 TCACAGAAAC
68743217 ATAGAAATTATCAAAA
1 ATAGAAATTATCAAAA
68743233 ATAGAAATTATCAAA
1 ATAGAAATTATCAAA
68743248 GTGCCGAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (16 bp):
ATAGAAATTATCAAAA
Found at i:68750930 original size:2 final size:2
Alignment explanation
Indices: 68750923--68750948 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
68750913 GCTCTTGCAC
68750923 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
68750949 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68752397 original size:47 final size:47
Alignment explanation
Indices: 68752343--68752669 Score: 510
Period size: 47 Copynumber: 7.0 Consensus size: 47
68752333 TTAGGATTTT
** *
68752343 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68752390 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
68752437 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68752484 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68752531 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68752578 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
68752625 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
68752670 TAGTGTGAAA
Statistics
Matches: 257, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 257 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68752445 original size:25 final size:25
Alignment explanation
Indices: 68752370--68752445 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
68752360 GTGTATATAT
68752370 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
68752395 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
68752417 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
68752442 GTGA
1 GTGA
68752446 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:68752517 original size:25 final size:25
Alignment explanation
Indices: 68752483--68752562 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
68752473 CCGAATGGCC
68752483 TATGTGATGAATGTGAACATGCATA
1 TATGTGATGAATGTGAACATGCATA
* * *
68752508 TATGTGATG-AGGCCG-A-ATGGC-CA
1 TATGTGATGAATG-TGAACAT-GCATA
*
68752531 -ATGTGATGAATGTGAGCATGCATA
1 TATGTGATGAATGTGAACATGCATA
68752555 TATGTGAT
1 TATGTGAT
68752563 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 8 0.20
25 17 0.41
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.30
Consensus pattern (25 bp):
TATGTGATGAATGTGAACATGCATA
Found at i:68752633 original size:25 final size:25
Alignment explanation
Indices: 68752558--68752633 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
68752548 ATGCATATAT
68752558 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
68752583 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
68752605 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
68752630 GTGA
1 GTGA
68752634 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:68752882 original size:37 final size:37
Alignment explanation
Indices: 68752832--68752983 Score: 250
Period size: 37 Copynumber: 4.1 Consensus size: 37
68752822 GGAAATATAT
* * *
68752832 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
68752869 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
68752906 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
68752943 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
68752980 TCCG
1 TCCG
68752984 AGCTAAAGGT
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:68755112 original size:29 final size:29
Alignment explanation
Indices: 68755079--68755137 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
68755069 CAACAATGGC
68755079 AACTCATGAATTTCTCATCAATTAAAAAA
1 AACTCATGAATTTCTCATCAATTAAAAAA
68755108 AACTCATGAATTTCTCATCAATTAAAAAA
1 AACTCATGAATTTCTCATCAATTAAAAAA
68755137 A
1 A
68755138 TTTTTTACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.31
Consensus pattern (29 bp):
AACTCATGAATTTCTCATCAATTAAAAAA
Found at i:68760788 original size:40 final size:40
Alignment explanation
Indices: 68760733--68760813 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
68760723 TTATGCTTAC
68760733 TATGTGTGTGCATGAATATGTGGAAGTTTCATTCTCTAAT
1 TATGTGTGTGCATGAATATGTGGAAGTTTCATTCTCTAAT
68760773 TATGTGTGTGCATGAATATGTGGAAGTTTCATTCTCTAAT
1 TATGTGTGTGCATGAATATGTGGAAGTTTCATTCTCTAAT
68760813 T
1 T
68760814 TTACCAAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.43
Consensus pattern (40 bp):
TATGTGTGTGCATGAATATGTGGAAGTTTCATTCTCTAAT
Found at i:68762235 original size:123 final size:123
Alignment explanation
Indices: 68762016--68762599 Score: 1080
Period size: 123 Copynumber: 4.8 Consensus size: 123
68762006 GAATTATGTG
68762016 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
68762081 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGATTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
68762139 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
68762204 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
68762262 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
68762327 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
68762385 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
68762450 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
68762508 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
68762573 GCTAAGT-CCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
68762600 AATTATATCC
Statistics
Matches: 452, Mismatches: 9, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
122 18 0.04
123 434 0.96
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:68762367 original size:64 final size:64
Alignment explanation
Indices: 68762290--68762482 Score: 150
Period size: 64 Copynumber: 3.1 Consensus size: 64
68762280 TAATGATTAT
68762290 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * *** * *** * * *
68762354 TGATATGTTTGTGTTTGAG-CCTT--A--GTA-ACGAAAATGAAATATGGATGTGTAATGAT--T
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCG-GGCT-AAGTCCCGAAG-GCAATTATGCT
*
68762411 AT
63 AG
68762413 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
68762477 TGATAT
1 TGATAT
68762483 GTTTGTGTTC
Statistics
Matches: 84, Mismatches: 34, Indels: 22
0.60 0.24 0.16
Matches are distributed among these distances:
58 2 0.02
59 22 0.26
60 8 0.10
61 7 0.08
62 7 0.08
63 8 0.10
64 28 0.33
65 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (64 bp):
TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
Found at i:68762637 original size:40 final size:40
Alignment explanation
Indices: 68762602--68762851 Score: 362
Period size: 40 Copynumber: 6.2 Consensus size: 40
68762592 ATGCTAGTAA
* * * * *
68762602 TTATATCCGGGTTAAGACCTGAAGGCAATTGTGCTAG-TG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
68762641 ACTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 -TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
68762682 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
68762722 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
68762762 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
* * *
68762802 TTATATCCGGGCTAAGACCCGAGGGCATTCGTGC--GTGTG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGT-TG
68762841 ATTATATCCGG
1 -TTATATCCGG
68762852 TTGTATTCCG
Statistics
Matches: 195, Mismatches: 12, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 190 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
Found at i:68770154 original size:123 final size:123
Alignment explanation
Indices: 68769935--68770519 Score: 1089
Period size: 123 Copynumber: 4.8 Consensus size: 123
68769925 GAATTATGTG
68769935 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
68770000 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
68770058 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
68770123 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
68770181 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
68770246 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
68770304 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
**
68770369 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCAAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* * * * *
68770427 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
68770492 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
68770520 AATTATATCC
Statistics
Matches: 453, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 453 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:68770163 original size:64 final size:64
Alignment explanation
Indices: 68770086--68770401 Score: 160
Period size: 64 Copynumber: 5.1 Consensus size: 64
68770076 TAATGATTAT
68770086 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * *** * *** * * *
68770150 TGATATGTTTGTGTTTGAG-CCTT--A--GTA-ACGAAAATGAAATATGGATGTGTAATGAT--T
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCG-GGCT-AAGTCCCGAAG-GCAATTATGCT
*
68770207 AT
63 AG
68770209 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * *** * *** * * *
68770273 TGATATGTTTGTGTTTGAG-CCTT--A--GTA-ACGAAAATGAAATATGGATGTGTAATGAT--T
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCG-GGCT-AAGTCCCGAAG-GCAATTATGCT
*
68770330 AT
63 AG
68770332 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
68770396 TGATAT
1 TGATAT
68770402 GTTTGTGTTC
Statistics
Matches: 162, Mismatches: 68, Indels: 44
0.59 0.25 0.16
Matches are distributed among these distances:
58 4 0.02
59 44 0.27
60 16 0.10
61 14 0.09
62 14 0.09
63 16 0.10
64 50 0.31
65 4 0.02
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.34
Consensus pattern (64 bp):
TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
Found at i:68770543 original size:40 final size:40
Alignment explanation
Indices: 68770488--68770771 Score: 369
Period size: 40 Copynumber: 7.1 Consensus size: 40
68770478 TGAATGATAC
* * * **
68770488 CCGGGCTAAGT-CCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAA-TACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * * *
68770528 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
68770568 CCGGGCTAATACTCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
68770608 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
68770648 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
68770688 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * *
68770728 CCGGGCTAAGACCCGAGGGCATTCGTGC--GTGTGATTATAT
1 CCGGGCTAATACCCGAAGGCATTTGTGCAAGT-TG-TTATAT
68770768 CCGG
1 CCGG
68770772 TTGTATTTCG
Statistics
Matches: 219, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.01
39 1 0.00
40 214 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:68776431 original size:26 final size:28
Alignment explanation
Indices: 68776375--68776443 Score: 106
Period size: 26 Copynumber: 2.5 Consensus size: 28
68776365 AAACTTGTAC
*
68776375 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68776403 AGCACTAAGTGT-CGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
68776429 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68776444 GACTCACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 20 0.53
27 6 0.16
28 12 0.32
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68784355 original size:27 final size:28
Alignment explanation
Indices: 68784298--68784367 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
68784288 AAACTTGTAC
*
68784298 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
68784326 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
68784353 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68784368 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:68784378 original size:27 final size:27
Alignment explanation
Indices: 68784298--68784379 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
68784288 AAACTTGTAC
* * *
68784298 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
68784326 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
68784353 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
68784380 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:68790923 original size:24 final size:24
Alignment explanation
Indices: 68790891--68790961 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
68790881 GGAGTGATAT
*
68790891 GTGGAGGAAATCAAGGAAAGGATG
1 GTGGAGGAAATCAAGGAGAGGATG
68790915 GTGGAGGAAATCAAGGAGAGGATG
1 GTGGAGGAAATCAAGGAGAGGATG
* *
68790939 GGGGA-GAAACTCAATGAGAGGAT
1 GTGGAGGAAA-TCAAGGAGAGGAT
68790962 TATGGAGAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 4 0.09
24 39 0.91
ACGTcount: A:0.39, C:0.06, G:0.42, T:0.13
Consensus pattern (24 bp):
GTGGAGGAAATCAAGGAGAGGATG
Found at i:68791138 original size:16 final size:17
Alignment explanation
Indices: 68791111--68791149 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
68791101 TCAGGTTTTG
* *
68791111 TTTTGTTCTTCTTTTCT
1 TTTTGTTCTTCTCTGCT
68791128 TTTTGTT-TTCTCTGCT
1 TTTTGTTCTTCTCTGCT
68791144 TTTTGT
1 TTTTGT
68791150 GCTATTTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.00, C:0.15, G:0.10, T:0.74
Consensus pattern (17 bp):
TTTTGTTCTTCTCTGCT
Found at i:68791145 original size:21 final size:22
Alignment explanation
Indices: 68791106--68791146 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
68791096 GTCTTTCAGG
* *
68791106 TTTTGTTTTGTTCTTCTTTTCT
1 TTTTGTTTTGCTCTGCTTTTCT
68791128 TTTTGTTTT-CTCTGCTTTT
1 TTTTGTTTTGCTCTGCTTTT
68791147 TGTGCTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.00, C:0.15, G:0.10, T:0.76
Consensus pattern (22 bp):
TTTTGTTTTGCTCTGCTTTTCT
Found at i:68792568 original size:26 final size:26
Alignment explanation
Indices: 68792529--68792578 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
68792519 TTTATACTGA
* *
68792529 TTACTGGTAGCTTTGCTACGATACCG
1 TTACTGGCAACTTTGCTACGATACCG
*
68792555 TTACTGGCAACTTTGCTGCGATAC
1 TTACTGGCAACTTTGCTACGATAC
68792579 TTATATTGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (26 bp):
TTACTGGCAACTTTGCTACGATACCG
Found at i:68793531 original size:21 final size:21
Alignment explanation
Indices: 68793501--68793546 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
68793491 AATATAGTAG
68793501 GTAG-AAATACTAAGACTACT
1 GTAGAAAATACTAAGACTACT
*
68793521 GTAGAAAATACTGAGACTACT
1 GTAGAAAATACTAAGACTACT
68793542 GTAGA
1 GTAGA
68793547 TAAAGGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (21 bp):
GTAGAAAATACTAAGACTACT
Found at i:68798416 original size:29 final size:29
Alignment explanation
Indices: 68798383--68798439 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
68798373 TGCATGTATG
68798383 TTTTAATGGCTAGAAGTGTTTTGGGTGTA
1 TTTTAATGGCTAGAAGTGTTTTGGGTGTA
68798412 TTTTAATGGCTAGAAGTGTTTTGGGTGT
1 TTTTAATGGCTAGAAGTGTTTTGGGTGT
68798440 GTTTGGGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.19, C:0.04, G:0.32, T:0.46
Consensus pattern (29 bp):
TTTTAATGGCTAGAAGTGTTTTGGGTGTA
Found at i:68800324 original size:26 final size:26
Alignment explanation
Indices: 68800295--68800344 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
68800285 TTTATACTGA
*
68800295 TTACTGGCAGCTTTGCTGCGATACCG
1 TTACTGGCAGCTTTGCTACGATACCG
68800321 TTACTGGCAGCTTTGCTACGATAC
1 TTACTGGCAGCTTTGCTACGATAC
68800345 TGATATTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.32
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTACGATACCG
Found at i:68802189 original size:13 final size:13
Alignment explanation
Indices: 68802171--68802195 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68802161 CCAAATCGTC
68802171 AAAAATTCATTCT
1 AAAAATTCATTCT
68802184 AAAAATTCATTC
1 AAAAATTCATTC
68802196 CAATGGAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAAATTCATTCT
Found at i:68802561 original size:26 final size:26
Alignment explanation
Indices: 68802532--68802581 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
68802522 TAATTAAAAG
68802532 AAAT-ACAAGAAAATAAAAATAAAACA
1 AAATAACAA-AAAATAAAAATAAAACA
* *
68802558 AAATAACTAAAAATAGAAATAAAA
1 AAATAACAAAAAATAAAAATAAAA
68802582 ATTAACATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.14
Consensus pattern (26 bp):
AAATAACAAAAAATAAAAATAAAACA
Found at i:68805414 original size:43 final size:41
Alignment explanation
Indices: 68805347--68805448 Score: 114
Period size: 43 Copynumber: 2.4 Consensus size: 41
68805337 ATCCCATATC
***
68805347 CCAGATATGGTCTTACATGGAATCTCAAATCAATGCCAATAG
1 CCAGATATGGTCTTACACCAAATCTCAAATCAATGCC-ATAG
* ** * *
68805389 CCTAGCTATGGTCTTACACCAAATCTCATGTCGATGCCATAT
1 CC-AGATATGGTCTTACACCAAATCTCAAATCAATGCCATAG
68805431 CCAGATATGGTCTTACAC
1 CCAGATATGGTCTTACAC
68805449 GTAAACTCAA
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
41 15 0.30
42 7 0.14
43 28 0.56
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (41 bp):
CCAGATATGGTCTTACACCAAATCTCAAATCAATGCCATAG
Found at i:68807850 original size:45 final size:45
Alignment explanation
Indices: 68807788--68807915 Score: 141
Period size: 45 Copynumber: 2.8 Consensus size: 45
68807778 GGATCAAATA
* * * *
68807788 CGATGCCAATGTGCCAGACATGGTCTTACACGTAACCACATAGAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACAAATAGAT
* * * *
68807833 CGATGTCAATGTCCCAGACGTGGTCTTATACGAAAACAAATATAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACAAATAGAT
* * *
68807878 CGATGCCAACGTCCCAGAC-GGCGTCTTACTCGAAAACA
1 CGATGCCAATGTCCCAGACATG-GTCTTACACGAAAACA
68807916 CATATTAGAA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
44 1 0.01
45 68 0.99
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (45 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACAAATAGAT
Found at i:68811245 original size:30 final size:30
Alignment explanation
Indices: 68811209--68811268 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
68811199 GTAAACTGAA
*
68811209 AAACAGTAACCTCGAATCATCAAAGGACAT
1 AAACAGTAACCTCAAATCATCAAAGGACAT
68811239 AAACAGTAACCTCAAATCATCAAAGGACAT
1 AAACAGTAACCTCAAATCATCAAAGGACAT
68811269 TTCTTACATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.23, G:0.12, T:0.17
Consensus pattern (30 bp):
AAACAGTAACCTCAAATCATCAAAGGACAT
Found at i:68817719 original size:40 final size:39
Alignment explanation
Indices: 68817675--68817843 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 39
68817665 CTTTGGGACA
* * *
68817675 TAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAAT
1 TAGCCCGGTT-TAGTAACTCGCACAAATGCCTTCGGGAAT
* *
68817715 TAGCCCAGATTTAGTAACTCGCACAAATGCCTTCGGGACT
1 TAGCCC-GGTTTAGTAACTCGCACAAATGCCTTCGGGAAT
* *
68817755 TAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAAT
1 TAGCCCGG-TTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * * *
68817795 T-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 TAG-CCCGG-TTTAGTAAC-TCGCACAAATGCCTTCGGGAAT
68817836 TAGCCCGG
1 TAGCCCGG
68817844 ATACCATTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 78 0.72
41 28 0.26
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
TAGCCCGGTTTAGTAACTCGCACAAATGCCTTCGGGAAT
Found at i:68817762 original size:80 final size:81
Alignment explanation
Indices: 68817669--68817843 Score: 228
Period size: 80 Copynumber: 2.2 Consensus size: 81
68817659 GATTGTCTTT
* * * *
68817669 GGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCAGATTTAGTAAC
1 GGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCAGATTTAGTAAC
* *
68817733 -TCGCACAAATGCCTTC
65 TTAGCACAAAAGCCTTC
* * * * *
68817749 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACT
1 GGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGTAACT
68817814 TAGCACAAAAGCCTTC
66 TAGCACAAAAGCCTTC
68817830 GGGACTTAGCCCGG
1 GGGACTTAGCCCGG
68817844 ATACCATTCA
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
80 53 0.65
81 28 0.35
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (81 bp):
GGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGTAACT
TAGCACAAAAGCCTTC
Found at i:68817832 original size:41 final size:39
Alignment explanation
Indices: 68817693--68817845 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 39
68817683 TTATAGTGAT
* *
68817693 TCGCACAATTGCCTTCGGGAATTAGCCCAGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * *
68817733 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
*
68817773 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
68817813 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGAT
68817846 ACCATTCAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
40 69 0.71
41 28 0.29
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:68846996 original size:39 final size:39
Alignment explanation
Indices: 68846948--68847208 Score: 307
Period size: 39 Copynumber: 6.7 Consensus size: 39
68846938 ATAATCACAC
* * * *
68846948 GCACGAATGCCCTCGGGTCTTAG-CCGGATATAACGACTT
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAA-AACTT
68846987 GCACAAATGCCTTCGGGTATTAG-CCGGATATAACAACTT
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAA-AACTT
68847026 GCACAAATGCCTTCGGGTATTAGCCCGGATATAAAACTT
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAAAACTT
68847065 GCACAAATGCCTTCGGGTATTAGCCCGGATAT-AAACTT
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAAAACTT
* *** *
68847103 GCACAAATG-CTTCGAGTATTAGCCCGGATATAGTCCTA
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAAAACTT
* * * * *
68847141 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTACTA
1 GCACAAATGCCTTCGGGTATTAGCCCGGATATAA-AACTT
* *
68847181 GCATAAATGTCTTCGGG-ACTTAGCCCGG
1 GCACAAATGCCTTCGGGTA-TTAGCCCGG
68847209 GTATCATTCA
Statistics
Matches: 197, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
37 21 0.11
38 25 0.13
39 115 0.58
40 36 0.18
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTATTAGCCCGGATATAAAACTT
Found at i:68847134 original size:116 final size:117
Alignment explanation
Indices: 68846932--68847208 Score: 325
Period size: 116 Copynumber: 2.4 Consensus size: 117
68846922 CGAAATACAA
* * * *
68846932 CCGGATATAATCAC-ACGCACGAATGCCCTCGGGTCTTAG-CCGGATATAACGACTTGCACAAAT
1 CCGGATATAATAACTA-GCACAAATGCCTTCGGGTATTAGCCCGGATATAAC-ACTTGCACAAAT
* * *
68846995 GCCTTCGGGTATTAGCCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
64 GCCTTCGAGTATTAGCCGGATATAGAC--CTAGCACAAATGCCTTCGGGTATTAAC
*
68847050 CCGGATATAA-AACTTGCACAAATGCCTTCGGGTATTAGCCCGGATATAA-ACTTGCACAAATG-
1 CCGGATATAATAACTAGCACAAATGCCTTCGGGTATTAGCCCGGATATAACACTTGCACAAATGC
* * *
68847112 CTTCGAGTATTAGCCCGGATATAGTCCTAGCACAATTGCCTTCGGGTCTTAAC
66 CTTCGAGTATTAG-CCGGATATAGACCTAGCACAAATGCCTTCGGGTATTAAC
* * *
68847165 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGCCCGG
1 CCGGATATAATAACTAGCACAAATGCCTTCGGGTA-TTAGCCCGG
68847209 GTATCATTCA
Statistics
Matches: 138, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
115 46 0.33
116 49 0.36
117 23 0.17
118 20 0.14
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (117 bp):
CCGGATATAATAACTAGCACAAATGCCTTCGGGTATTAGCCCGGATATAACACTTGCACAAATGC
CTTCGAGTATTAGCCGGATATAGACCTAGCACAAATGCCTTCGGGTATTAAC
Found at i:68847152 original size:76 final size:77
Alignment explanation
Indices: 68846948--68847174 Score: 280
Period size: 76 Copynumber: 2.9 Consensus size: 77
68846938 ATAATCACAC
* * * * * *
68846948 GCACGAATGCCCTCGGGTCTTAG-CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAG-C
1 GCACAAATGCCTTCGAGTATTAGCCCGGATATAA-AACTAGCACAAATGCCTTCGGGTATTAGCC
68847011 CGGATATAACAACTT
65 CGGATAT-A-AACTT
* *
68847026 GCACAAATGCCTTCGGGTATTAGCCCGGATATAAAACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GCACAAATGCCTTCGAGTATTAGCCCGGATATAAAACTAGCACAAATGCCTTCGGGTATTAGCCC
68847091 GGATATAAACTT
66 GGATATAAACTT
*** * * *
68847103 GCACAAATG-CTTCGAGTATTAGCCCGGATATAGTCCTAGCACAATTGCCTTCGGGTCTTAACCC
1 GCACAAATGCCTTCGAGTATTAGCCCGGATATAAAACTAGCACAAATGCCTTCGGGTATTAGCCC
68847167 GGATATAA
66 GGATATAA
68847175 TTACTAGCAT
Statistics
Matches: 135, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
76 55 0.41
77 14 0.10
78 48 0.36
79 18 0.13
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (77 bp):
GCACAAATGCCTTCGAGTATTAGCCCGGATATAAAACTAGCACAAATGCCTTCGGGTATTAGCCC
GGATATAAACTT
Found at i:68847714 original size:129 final size:125
Alignment explanation
Indices: 68847177--68847768 Score: 938
Period size: 123 Copynumber: 4.8 Consensus size: 125
68847167 GGATATAATT
* * * * * *
68847177 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATA-A-AT
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATAT
**
68847240 CAATAATCATTAACACATCCATATTTCATTTTCGTTACTAAGGCTTGAACACAAACATATC
66 CAATAATCATT-ACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
68847301 AACTAGCATAATTGCCTTC-GGACTTAGCCCGGGTACCATTCAAATACTCATACA-ACA-ATATA
1 -ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATA
68847363 TCAATAATCATTACACATCCATATTTCA-TTTCGTTACTAAGGCTCAAACACAAACATATC
65 TCAATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
68847423 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACAC--ATATAT
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATAT
68847486 CAATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 CAATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
68847546 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA-TCATATACACACATATAT
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTC--ATACACACATATAT
68847610 ATCATATATCATACATTACACAT-CATATTTCATTTTCGTTACTAAGGCTC-AACACAAACATAT
64 ATCA-ATA--AT-CATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATAT
68847673 C
125 C
68847674 ACTAGCAATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATA-ATA
1 ACTAGC-ATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATA
*
68847738 TCAATAATCATTAAACATCCATATTTCATTT
65 TCAATAATCATTACACATCCATATTTCATTT
68847769 CACATAATTC
Statistics
Matches: 442, Mismatches: 9, Indels: 33
0.91 0.02 0.07
Matches are distributed among these distances:
121 18 0.04
122 101 0.23
123 109 0.25
124 66 0.15
125 16 0.04
126 11 0.02
127 9 0.02
128 31 0.07
129 69 0.16
130 12 0.03
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (125 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATAT
CAATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:68847725 original size:252 final size:245
Alignment explanation
Indices: 68847177--68847768 Score: 949
Period size: 252 Copynumber: 2.4 Consensus size: 245
68847167 GGATATAATT
* * * * * * *
68847177 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
**
68847242 ATAATCATTAACACATCCATATTTCATTTTCGTTACTAAGGCTTGAACACAAACATATCAACTAG
66 ATAATCATT-ACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCAACTAG
68847307 CATAATTGCCTTCGGACTTAGCCCGGGTACCATTCAAATACTCATACAACAATATATCAATAATC
130 CATAATTGCCTTCGGACTTAGCCCGGGTACCATTCAAATACTCATACAACAATATATCAATAATC
68847372 ATTACACATCCATATTTCATTTCGTTACTAAGGCTCAAACACAAACATATC
195 ATTACACATCCATATTTCATTTCGTTACTAAGGCTCAAACACAAACATATC
68847423 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
68847488 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC-ACTAGC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCAACTAGC
68847552 ATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATA-TCATATACACACATATATATCATA
131 ATAATTGCCTTC-GGACTTAGCCCGGGTACCATTCAAATACTC--ATACA-ACA-ATATATCA-A
68847616 TATCATACATTACACAT-CATATTTCATTTTCGTTACTAAGGCTC-AACACAAACATATC
190 TA--AT-CATTACACATCCATATTTCA-TTTCGTTACTAAGGCTCAAACACAAACATATC
68847674 ACTAGCAATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATAATAT
1 ACTAGC-ATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT-ATAT
*
68847739 CAATAATCATTAAACATCCATATTTCATTT
64 CAATAATCATTACACATCCATATTTCATTT
68847769 CACATAATTC
Statistics
Matches: 324, Mismatches: 10, Indels: 17
0.92 0.03 0.05
Matches are distributed among these distances:
244 20 0.06
245 74 0.23
246 72 0.22
247 3 0.01
248 8 0.02
249 3 0.01
251 31 0.10
252 80 0.25
253 33 0.10
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (245 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATCAACTAGC
ATAATTGCCTTCGGACTTAGCCCGGGTACCATTCAAATACTCATACAACAATATATCAATAATCA
TTACACATCCATATTTCATTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:68854767 original size:36 final size:36
Alignment explanation
Indices: 68854733--68854818 Score: 110
Period size: 36 Copynumber: 2.5 Consensus size: 36
68854723 CTCAATCATG
*
68854733 CACTGGGCCGTAGCCCTTTTCATATTTCATATCATAA
1 CACTGGGCCGAAG-CCTTTTCATATTTCATATCATAA
*
68854770 TACTGGGCCGAAGCCTTTTCATATTTCATAT--T--
1 CACTGGGCCGAAGCCTTTTCATATTTCATATCATAA
68854802 -ACTGGGCCGAAGCCTTT
1 CACTGGGCCGAAGCCTTT
68854819 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
31 17 0.36
34 1 0.02
36 18 0.38
37 11 0.23
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (36 bp):
CACTGGGCCGAAGCCTTTTCATATTTCATATCATAA
Found at i:68854805 original size:31 final size:29
Alignment explanation
Indices: 68854757--68854818 Score: 97
Period size: 31 Copynumber: 2.1 Consensus size: 29
68854747 CCTTTTCATA
68854757 TTTCATATCATAATACTGGGCCGAAGCCT
1 TTTCATATCATAATACTGGGCCGAAGCCT
*
68854786 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATA--TCATAATACTGGGCCGAAGCCT
68854817 TT
1 TT
68854819 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (29 bp):
TTTCATATCATAATACTGGGCCGAAGCCT
Found at i:68855056 original size:24 final size:24
Alignment explanation
Indices: 68855010--68855128 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
68855000 GCTTTATCAT
*
68855010 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
68855035 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
68855059 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
68855082 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
68855106 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68855129 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68855089 original size:47 final size:48
Alignment explanation
Indices: 68855010--68855128 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
68855000 GCTTTATCAT
*
68855010 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
68855059 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
68855106 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68855129 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:68855204 original size:20 final size:20
Alignment explanation
Indices: 68855179--68855238 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
68855169 TATGATTACC
68855179 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
68855199 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
68855219 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
68855239 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:68859133 original size:29 final size:29
Alignment explanation
Indices: 68859094--68859172 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68859084 CTTAATAATC
*
68859094 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68859124 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68859153 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68859173 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68860983 original size:29 final size:29
Alignment explanation
Indices: 68860950--68861081 Score: 183
Period size: 29 Copynumber: 4.6 Consensus size: 29
68860940 GTGACGAGAT
68860950 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
68860979 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68861008 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
68861037 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
68861066 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
68861082 AGTTCGGAGG
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68861020 original size:58 final size:58
Alignment explanation
Indices: 68860950--68861081 Score: 203
Period size: 58 Copynumber: 2.3 Consensus size: 58
68860940 GTGACGAGAT
*
68860950 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCT-GAAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAA-ATA
*
68861008 TGGCACTAAGTGTGCGTGCTGGAAATATTTGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATA
* **
68861066 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
68861082 AGTTCGGAGG
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
58 63 0.93
59 5 0.07
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:68861099 original size:58 final size:56
Alignment explanation
Indices: 68860951--68861140 Score: 161
Period size: 58 Copynumber: 3.3 Consensus size: 56
68860941 TGACGAGATT
* * *
68860951 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGAAAATATAT
1 GGCACTAAGTGTGCGAGCTGG-AA-ATATGGCACTAAGTGTGCAAGCTGAAAATATAC
*
68861009 GGCACTAAGTGTGCGTGCTGGAAATATTTGGCACTAAGTGTGCAAGCTGGAAAA-ATAC
1 GGCACTAAGTGTGCGAGCTGGAAATA--TGGCACTAAGTGTGCAAGCT-GAAAATATAC
** * ** ** * *
68861067 GGCACTGGGTGTGCGAGTTCGGAGGGTATGGCACTGTGTGTGCGAGCT-TAAAT-TAC
1 GGCACTAAGTGTGCGAGCT-GGA-AATATGGCACTAAGTGTGCAAGCTGAAAATATAC
68861123 GTGGCACTAAGTGTGCGA
1 --GGCACTAAGTGTGCGA
68861141 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
56 9 0.08
57 2 0.02
58 89 0.81
59 8 0.07
60 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (56 bp):
GGCACTAAGTGTGCGAGCTGGAAATATGGCACTAAGTGTGCAAGCTGAAAATATAC
Found at i:68870366 original size:29 final size:29
Alignment explanation
Indices: 68870327--68870405 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68870317 CTTAATAATC
*
68870327 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68870357 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68870386 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68870406 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68871063 original size:2 final size:2
Alignment explanation
Indices: 68871045--68871078 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
68871035 TGATGGCCGA
* *
68871045 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68871079 CAACTATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68885801 original size:40 final size:40
Alignment explanation
Indices: 68885718--68885938 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
68885708 ACCCAAGTAT
** * *
68885718 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
68885756 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
68885796 CTTCGGGACTTAGCCAGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
68885836 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
68885876 CTTCAGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
68885917 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
68885939 CATTCGAATA
Statistics
Matches: 149, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 94 0.63
41 28 0.19
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:68890037 original size:27 final size:26
Alignment explanation
Indices: 68889995--68890283 Score: 310
Period size: 27 Copynumber: 10.8 Consensus size: 26
68889985 TGGATAAGTT
68889995 GTAGAATTACCGAAATACCCCTGTATG
1 GTAGAATTACCGAAATACCCCTGTA-G
* *
68890022 GTAGAATTACCAAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTA-G
** *
68890049 GTA-AATTATTGAAATACCCTTGTAG
1 GTAGAATTACCGAAATACCCCTGTAG
68890074 AGTAGAATTACCGAAATACCCCTGTAG
1 -GTAGAATTACCGAAATACCCCTGTAG
*
68890101 GATAGAATTACCGAAATACCCTTGTAG
1 G-TAGAATTACCGAAATACCCCTGTAG
* *
68890128 GATAGAAATACCAAAATACCCCTGTAG
1 G-TAGAATTACCGAAATACCCCTGTAG
**
68890155 GATAGAATTATTGAAATACCCCTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTA-G
* * *
68890183 GTAAAATTACTGAAATACCCCTATAG
1 GTAGAATTACCGAAATACCCCTGTAG
* *
68890209 GATAGAATTATCGAAATACCCTTGTAAG
1 G-TAGAATTACCGAAATACCCCTGT-AG
* * *
68890237 GTAGAAATACTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTA-G
*
68890264 GTAGAATTACCGAGATACCC
1 GTAGAATTACCGAAATACCC
68890284 TTGTGGGGGA
Statistics
Matches: 220, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
25 1 0.00
26 23 0.10
27 191 0.87
28 5 0.02
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCGAAATACCCCTGTAG
Found at i:68890134 original size:54 final size:53
Alignment explanation
Indices: 68889996--68890287 Score: 361
Period size: 54 Copynumber: 5.4 Consensus size: 53
68889986 GGATAAGTTG
* * *
68889996 TAGAATTACCGAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTATAGGG
1 TAGAATTACCGAAATACCCTTGTA-GGTAGAATTACCGAAATACCCCTATAGGA
** *
68890050 TA-AATTATTGAAATACCCTTGTAGAGTAGAATTACCGAAATACCCCTGTAGGA
1 TAGAATTACCGAAATACCCTTGTAG-GTAGAATTACCGAAATACCCCTATAGGA
* * *
68890103 TAGAATTACCGAAATACCCTTGTAGGATAGAAATACCAAAATACCCCTGTAGGA
1 TAGAATTACCGAAATACCCTTGTAGG-TAGAATTACCGAAATACCCCTATAGGA
** * * *
68890157 TAGAATTATTGAAATACCCCTGTAGGGTAAAATTACTGAAATACCCCTATAGGA
1 TAGAATTACCGAAATACCCTTGTA-GGTAGAATTACCGAAATACCCCTATAGGA
* * * *
68890211 TAGAATTATCGAAATACCCTTGTAAGGTAGAAATACTGAAATACCCCTATAGGG
1 TAGAATTACCGAAATACCCTTGT-AGGTAGAATTACCGAAATACCCCTATAGGA
*
68890265 TAGAATTACCGAGATACCCTTGT
1 TAGAATTACCGAAATACCCTTGT
68890288 GGGGGAAAAT
Statistics
Matches: 208, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
52 1 0.00
53 46 0.22
54 158 0.76
55 3 0.01
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (53 bp):
TAGAATTACCGAAATACCCTTGTAGGTAGAATTACCGAAATACCCCTATAGGA
Found at i:68890179 original size:81 final size:81
Alignment explanation
Indices: 68889996--68890283 Score: 366
Period size: 81 Copynumber: 3.6 Consensus size: 81
68889986 GGATAAGTTG
* * * *
68889996 TAGAATTACCGAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTATAGGGTA-AATTATTG
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTATCG
68890060 AAATACCCTTGTA-GA
66 AAATACCCTTGTAGGA
* * * * *
68890075 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGATAGAAATACC
1 -TAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTATC
* *
68890140 AAAATACCCCTGTAGGA
65 GAAATACCCTTGTAGGA
** * *
68890157 TAGAATTATTGAAATACCCCTGTAGGGTAAAATTACTGAAATACCCCTATAGGATAGAATTATCG
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTATCG
68890222 AAATACCCTTGTAAGG-
66 AAATACCCTTGT-AGGA
* * * *
68890238 TAGAAATACTGAAATACCCCTATAGGGTAGAATTACCGAGATACCC
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCC
68890284 TTGTGGGGGA
Statistics
Matches: 177, Mismatches: 28, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
80 50 0.28
81 122 0.69
82 5 0.03
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (81 bp):
TAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGATAGAATTATCG
AAATACCCTTGTAGGA
Found at i:68890210 original size:108 final size:107
Alignment explanation
Indices: 68889996--68890301 Score: 425
Period size: 108 Copynumber: 2.8 Consensus size: 107
68889986 GGATAAGTTG
* *
68889996 TAGAATTACCGAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTATAGGGTA-AATTATTG
1 TAGAATTACCGAAATACCCTTGTA-GGTAGAAATACCAAAATACCCCTATAGGGTAGAATTATTG
* * *
68890060 AAATACCCTTGTAGAGTAGAATTACCGAAATACCCCTGTAGGA
65 AAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTATAGGA
* *
68890103 TAGAATTACCGAAATACCCTTGTAGGATAGAAATACCAAAATACCCCTGTAGGATAGAATTATTG
1 TAGAATTACCGAAATACCCTTGTAGG-TAGAAATACCAAAATACCCCTATAGGGTAGAATTATTG
* *
68890168 AAATACCCCTGTAGGGTAAAATTACTGAAATACCCCTATAGGA
65 AAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTATAGGA
* ** **
68890211 TAGAATTATCGAAATACCCTTGTAAGGTAGAAATACTGAAATACCCCTATAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCCTTGT-AGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTATTG
* * *
68890276 AGATACCCTTGTGGGGGAAAATTACC
65 AAATACCCTTGTAGGGTAAAATTACC
68890302 ATTTTGCCCC
Statistics
Matches: 175, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
106 2 0.01
107 49 0.28
108 121 0.69
109 3 0.02
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (107 bp):
TAGAATTACCGAAATACCCTTGTAGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTATTGA
AATACCCTTGTAGGGTAAAATTACCGAAATACCCCTATAGGA
Found at i:68897736 original size:27 final size:27
Alignment explanation
Indices: 68897706--68897877 Score: 186
Period size: 27 Copynumber: 6.4 Consensus size: 27
68897696 GGACAAGTTA
* *
68897706 TAGAATTACCAAAATACCCTTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
68897733 TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
68897760 TAGAATTACCGAAATACCCCTGT-AGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * *
68897786 ATAGAATTACCAAAATACCCTTGTAGGG
1 -TAGAATTACCGAAATACCCCTGTAAGG
* *
68897814 TAGAAATACCGAAATACCCCTAT-AGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * * * *
68897840 ATAGAATTATCGACATACCCTTATAGGG
1 -TAGAATTACCGAAATACCCCTGTAAGG
*
68897868 TAAAATTACC
1 TAGAATTACC
68897878 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.03
27 114 0.93
28 4 0.03
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAAGG
Found at i:68897791 original size:54 final size:54
Alignment explanation
Indices: 68897706--68897877 Score: 238
Period size: 54 Copynumber: 3.2 Consensus size: 54
68897696 GGACAAGTTA
* * *
68897706 TAGAATTACCAAAATACCCTTGTAAGG-TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGT-AGGATAGAATTACCGAAATACCCTTGTAGGG
*
68897760 TAGAATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGG
* * * * *
68897814 TAGAAATACCGAAATACCCCTATAGGATAGAATTATCGACATACCCTTATAGGG
1 TAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGG
*
68897868 TAAAATTACC
1 TAGAATTACC
68897878 ATTTTGCCCC
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 3 0.03
54 102 0.97
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGG
Found at i:68897845 original size:81 final size:81
Alignment explanation
Indices: 68897705--68897878 Score: 258
Period size: 81 Copynumber: 2.1 Consensus size: 81
68897695 TGGACAAGTT
* * *
68897705 ATAGAATTACCAAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
1 ATAGAATTACCAAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACC
*
68897770 GAAATACCCCTGTAGG
66 GAAATACCCCTATAGG
* *
68897786 ATAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGATAGAATTATC
1 ATAGAATTACCAAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACC
* *
68897851 GACATACCCTTATAGG
66 GAAATACCCCTATAGG
* *
68897867 GTAAAATTACCA
1 ATAGAATTACCA
68897879 TTTTGCCCCT
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (81 bp):
ATAGAATTACCAAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACC
GAAATACCCCTATAGG
Found at i:68898659 original size:27 final size:26
Alignment explanation
Indices: 68898619--68898678 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
68898609 ACATATATAT
*
68898619 ATATCTATTCTGGTGACCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
68898645 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
68898672 ATATCTG
1 ATATCTG
68898679 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:68900188 original size:93 final size:93
Alignment explanation
Indices: 68900076--68900247 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68900066 GCCCATAAGT
* *
68900076 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68900141 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
68900169 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68900234 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
68900248 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68900243 original size:46 final size:46
Alignment explanation
Indices: 68900068--68900243 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68900058 TGTAACCCGC
* * *
68900068 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
68900114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
68900164 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
68900207 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68900244 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:68902665 original size:29 final size:29
Alignment explanation
Indices: 68902626--68902713 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
68902616 CAAAGATAAC
*
68902626 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
68902655 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
68902684 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
68902714 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:68902684 original size:15 final size:15
Alignment explanation
Indices: 68902626--68902704 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
68902616 CAAAGATAAC
*
68902626 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
68902640 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
68902655 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
68902669 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
68902684 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
68902699 AAGAAA
1 AAGAAA
68902705 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:68902713 original size:15 final size:15
Alignment explanation
Indices: 68902637--68902713 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
68902627 AGAAAACCGA
68902637 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
68902652 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
68902666 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
68902680 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
68902696 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
68902711 ATA
1 ATA
68902714 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:68905735 original size:46 final size:48
Alignment explanation
Indices: 68905613--68905742 Score: 171
Period size: 46 Copynumber: 2.8 Consensus size: 48
68905603 TGTAACCCGC
*
68905613 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAG-T-CAT
* * *
68905663 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
68905706 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68905743 TGCCCAAATA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 32 0.45
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
Found at i:68905761 original size:46 final size:45
Alignment explanation
Indices: 68905618--68905761 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
68905608 CCCGCCCATA
* *
68905618 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
68905666 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
68905711 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
68905757 AGTGA
1 AGTGA
68905762 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:68914641 original size:14 final size:15
Alignment explanation
Indices: 68914612--68914644 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
68914602 AGAAAGACCA
*
68914612 AAAATGACCAAAAAC
1 AAAACGACCAAAAAC
68914627 AAAACGACC-AAAAC
1 AAAACGACCAAAAAC
68914641 AAAA
1 AAAA
68914645 AGGTTACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.70, C:0.21, G:0.06, T:0.03
Consensus pattern (15 bp):
AAAACGACCAAAAAC
Found at i:68914861 original size:16 final size:17
Alignment explanation
Indices: 68914833--68914864 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68914823 CTACTCACCC
68914833 AAATCCCTACCAACCAA
1 AAATCCCTACCAACCAA
68914850 AAATCCCT-CCAACCA
1 AAATCCCTACCAACCA
68914865 CTCCTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATCCCTACCAACCAA
Found at i:68922066 original size:19 final size:19
Alignment explanation
Indices: 68922039--68922075 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
68922029 CACTACCGGC
* *
68922039 AATCCATTCAAATCATCTG
1 AATCAATTCAAATAATCTG
68922058 AATCAATTCAAATAATCT
1 AATCAATTCAAATAATCT
68922076 CATTATTCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.22, G:0.03, T:0.32
Consensus pattern (19 bp):
AATCAATTCAAATAATCTG
Found at i:68924762 original size:8 final size:8
Alignment explanation
Indices: 68924749--68924775 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
68924739 ACTTTTAGCT
68924749 TTTCGGCA
1 TTTCGGCA
68924757 TTTCGGCA
1 TTTCGGCA
68924765 TTTCGGCA
1 TTTCGGCA
68924773 TTT
1 TTT
68924776 TGGCTCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:68927333 original size:40 final size:40
Alignment explanation
Indices: 68927225--68927334 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
68927215 ATTGAATGAT
* * * * *
68927225 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
68927265 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
68927305 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
68927335 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:68927349 original size:40 final size:39
Alignment explanation
Indices: 68927225--68927374 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
68927215 ATTGAATGAT
* * * * * * *
68927225 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
68927265 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
68927305 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
68927345 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
68927375 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:68935388 original size:40 final size:40
Alignment explanation
Indices: 68935280--68935389 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
68935270 ATTGAATGAT
* * * * *
68935280 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
68935320 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
68935360 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
68935390 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:68935404 original size:40 final size:39
Alignment explanation
Indices: 68935280--68935429 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
68935270 ATTGAATGAT
* * * * * * *
68935280 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
68935320 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
68935360 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
68935400 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
68935430 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:68938703 original size:30 final size:30
Alignment explanation
Indices: 68938668--68938728 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68938658 TCCTTAACTC
68938668 AAACTTTGGCAAAACTACAATTTTTCCCCT
1 AAACTTTGGCAAAACTACAATTTTTCCCCT
* * ** *
68938698 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAACTACAATTTTTCCCCT
68938728 A
1 A
68938729 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAACTACAATTTTTCCCCT
Found at i:68943037 original size:47 final size:47
Alignment explanation
Indices: 68942963--68943087 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
68942953 CCCATAAGTT
* * **
68942963 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCTCA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATACATAACT-A
* * * * *
68943010 AACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATACATAACTA
68943056 AACTCGGACTCAACTCAACGAGTTCGGATGCC
1 AACTCGGACTCAACTCAACGAGTTCGGATGCC
68943088 CAAACATCCT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
46 32 0.48
47 34 0.52
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCATACATAACTA
Found at i:68943102 original size:46 final size:46
Alignment explanation
Indices: 68942957--68943102 Score: 140
Period size: 46 Copynumber: 3.2 Consensus size: 46
68942947 AACCCGCCCA
* * *
68942957 TAAGTTAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATC-C
* * * *
68943007 TCA---AACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC
68943049 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCC
68943097 T-AGTGA
1 TAAGTGA
68943103 CATGTCACTT
Statistics
Matches: 80, Mismatches: 10, Indels: 16
0.75 0.09 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
46 36 0.45
47 30 0.38
48 5 0.06
50 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC
Found at i:68945952 original size:29 final size:29
Alignment explanation
Indices: 68945917--68945998 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
68945907 TTATATTCAC
*
68945917 ATGGCCCATTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCAAAATCACATTTAT
*
68945946 ATGGCCCTTTAGGCCAAAATCACATTTAT
1 ATGGCCCATTAGGCCAAAATCACATTTAT
*
68945975 GTGGCCCATTAGGCCAAAATCACA
1 ATGGCCCATTAGGCCAAAATCACA
68945999 CTATATTCGT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (29 bp):
ATGGCCCATTAGGCCAAAATCACATTTAT
Found at i:68970695 original size:27 final size:27
Alignment explanation
Indices: 68970664--68970723 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
68970654 TAGTTTACCA
* *
68970664 AATTACTAAA-ATACCCTCGATTTGTAG
1 AATTAC-AAATATACCATCGATTTATAG
*
68970691 AATTACAAATTTACCATCGATTTATAG
1 AATTACAAATATACCATCGATTTATAG
68970718 AATTAC
1 AATTAC
68970724 CATTTCACCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (27 bp):
AATTACAAATATACCATCGATTTATAG
Found at i:68970792 original size:81 final size:81
Alignment explanation
Indices: 68970675--68970874 Score: 267
Period size: 81 Copynumber: 2.5 Consensus size: 81
68970665 ATTACTAAAA
* * * * *
68970675 TACCCTCGATTTGTAGAATTACAAATTTACCATCGATTTATAGAATTACCATTTCACCCTCAATT
1 TACCCTCGATTTATAAAATTACAATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCAATT
*
68970740 TACAAAATTACCGTTT
66 TACAAAATTACCATTT
* * * *
68970756 TACCCTCGATTTATACAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACAATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCAATT
68970821 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* **
68970837 TACCCTC-AGTTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGA-TTTATAAAATTACAATTTTACCCTCGATT
68970875 GTCAAATTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 104 0.99
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACAATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCAATT
TACAAAATTACCATTT
Found at i:68970880 original size:27 final size:27
Alignment explanation
Indices: 68970675--68970874 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
68970665 ATTACTAAAA
** * * *
68970675 TACCCTCGATTTGTAGAATTACAAATT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
68970702 TACCATCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
* * *
68970729 CACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTT
* *
68970756 TACCCTCGATTTATACAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
*
68970783 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
68970810 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTT
**
68970837 TACCCTC-AGTTTACAAAATTACTGTTT
1 TACCCTCGA-TTTACAAAATTACCATTT
68970864 TACCCTCGATT
1 TACCCTCGATT
68970875 GTCAAATTAC
Statistics
Matches: 151, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCATTT
Found at i:68970937 original size:27 final size:27
Alignment explanation
Indices: 68970873--68971029 Score: 201
Period size: 27 Copynumber: 5.8 Consensus size: 27
68970863 TTACCCTCGA
* **
68970873 TTGTCAAATTACTGAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
68970899 TGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
*
68970927 TTGTAATATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
68970954 TTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
68970981 TTGTAAAATTACCAAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
68971008 TTGTAAAATTACCAAAATACCC
1 TTGTAAAATTACCAAAATACCC
68971030 TTGATTTACA
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
26 5 0.04
27 102 0.90
28 6 0.05
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:68971036 original size:27 final size:27
Alignment explanation
Indices: 68970906--68971142 Score: 187
Period size: 27 Copynumber: 8.7 Consensus size: 27
68970896 TGTTGGATAG
*
68970906 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
68970933 TATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
68970960 AATTACCAAAATACCAC-TGGTTTGTAA
1 AATTACCAAAATACC-CTTGATTTGTAA
**
68970987 AATTACCAAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
**
68971014 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
68971041 AATTA-CAGAAATACCTTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * * **
68971070 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
** * *
68971097 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
68971124 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
68971143 TAGGATGAAA
Statistics
Matches: 176, Mismatches: 27, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
26 3 0.02
27 146 0.83
28 8 0.05
29 19 0.11
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:68971043 original size:54 final size:54
Alignment explanation
Indices: 68970810--68971142 Score: 178
Period size: 54 Copynumber: 6.1 Consensus size: 54
68970800 ATTACCATTT
* *** ** *****
68970810 TACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACTGTTT
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
* ** * * *
68970864 TACCCTCGATTGT-C-AAATTACTGAAATACCC-CTGTTGGATAGAATTACCAAAA
1 TACCCTTGATT-TACAAAATTACCAAAATACCCTCAGTTTG-TAAAATTACCAAAA
* ** *
68970917 TACCCCT-AGTTTGTAATATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAATACCCTC-AGTTTGTAAAATTACCAAAA
* ** *
68970971 TACCAC-TGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTTGATTTACAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
* * * * *
68971025 TACCCTTGATTTACAAAATTA-CAGAAATACCTTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGATTTACAAAATTACCA-AAATACC-CTCAGTTTGT-AAAATTACCA-AAA
* * ** ** * *
68971081 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
*
68971135 CACCCTTG
1 TACCCTTG
68971143 TAGGATGAAA
Statistics
Matches: 214, Mismatches: 49, Indels: 32
0.73 0.17 0.11
Matches are distributed among these distances:
52 6 0.03
53 29 0.14
54 123 0.57
55 20 0.09
56 36 0.17
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
Found at i:68971043 original size:81 final size:81
Alignment explanation
Indices: 68970878--68971055 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 81
68970868 CTCGATTGTC
* * * * * *
68970878 AAATTACTGAAATACCCCT-GTTGGATAGAATTACCAAAATACCCCTAGTTTGTAATATTACCAA
1 AAATTACAGAAATACCACTGGTTTG-TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAA
**
68970942 AATACCCCTAGTTTGTA
65 AATACCCCTAGTTTACA
68970959 AAATTACCA-AAATACCACTGGTTTGTAAAATTACCAAAATA-CCCTCAATTTGTAAAATTACCA
1 AAATTA-CAGAAATACCACTGGTTTGTAAAATTACCAAAATACCCCT-AATTTGTAAAATTACCA
*
68971022 AAATA-CCCTTGATTTACA
64 AAATACCCCTAG-TTTACA
68971040 AAATTACAGAAATACC
1 AAATTACAGAAATACC
68971056 TTTGACTTTC
Statistics
Matches: 83, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
80 11 0.13
81 67 0.81
82 5 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTACAGAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAA
ATACCCCTAGTTTACA
Found at i:68971196 original size:27 final size:27
Alignment explanation
Indices: 68971164--68971215 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
68971154 GACTAAAATA
68971164 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
68971191 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
68971216 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:68973504 original size:40 final size:40
Alignment explanation
Indices: 68973459--68973625 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
68973449 CGGAATATAA
*
68973459 CCGGATTTAATCAC-ATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTA-GCACAAATGCCTTCGGGTCTTAGC
* * * * * *
68973499 CCGGATAGAATAACTCGCACGAATGTCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
68973539 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
68973579 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68973618 CCGGATAT
1 CCGGATAT
68973626 CATTCAATTT
Statistics
Matches: 100, Mismatches: 26, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
39 13 0.13
40 87 0.87
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68976277 original size:19 final size:19
Alignment explanation
Indices: 68976253--68976316 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
68976243 GGGGTATATC
*
68976253 GGTAATTTTGCTCTTTAGG
1 GGTAATTTTGCTATTTAGG
* * *
68976272 GGTAATTTCGGTAATTT--C
1 GGTAATTTTGCT-ATTTAGG
*
68976290 GGTAATTTTGCTTTTTAGG
1 GGTAATTTTGCTATTTAGG
68976309 GGTAATTT
1 GGTAATTT
68976317 CGTGCTCTAC
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
17 3 0.09
18 10 0.29
19 18 0.53
20 3 0.09
ACGTcount: A:0.19, C:0.08, G:0.25, T:0.48
Consensus pattern (19 bp):
GGTAATTTTGCTATTTAGG
Found at i:68976286 original size:9 final size:9
Alignment explanation
Indices: 68976272--68976297 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
68976262 GCTCTTTAGG
68976272 GGTAATTTC
1 GGTAATTTC
68976281 GGTAATTTC
1 GGTAATTTC
68976290 GGTAATTT
1 GGTAATTT
68976298 TGCTTTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (9 bp):
GGTAATTTC
Found at i:68983613 original size:9 final size:9
Alignment explanation
Indices: 68983599--68983624 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
68983589 GCTCTTTAGG
68983599 GGTAATTTC
1 GGTAATTTC
68983608 GGTAATTTC
1 GGTAATTTC
68983617 GGTAATTT
1 GGTAATTT
68983625 TGCTTTTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (9 bp):
GGTAATTTC
Found at i:68983638 original size:18 final size:19
Alignment explanation
Indices: 68983580--68983642 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 19
68983570 GGGGTATATC
*
68983580 GGTAATTTTGCTCTTTAGG
1 GGTAATTTTGCTATTTAGG
* * *
68983599 GGTAATTTCGGTAATTT--C
1 GGTAATTTTGCT-ATTTAGG
68983617 GGTAATTTTGCT-TTTAGG
1 GGTAATTTTGCTATTTAGG
68983635 GGTAATTT
1 GGTAATTT
68983643 CGTGATCTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
16 3 0.09
18 18 0.53
19 10 0.29
20 3 0.09
ACGTcount: A:0.19, C:0.08, G:0.25, T:0.48
Consensus pattern (19 bp):
GGTAATTTTGCTATTTAGG
Found at i:68985517 original size:25 final size:24
Alignment explanation
Indices: 68985479--68985548 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
68985469 AGGAAGTGCT
*
68985479 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
68985503 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
68985528 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
68985549 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:68985561 original size:24 final size:24
Alignment explanation
Indices: 68985478--68985561 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
68985468 GAGGAAGTGC
* *
68985478 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
68985503 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
68985527 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
68985551 TAAAAGAGGCT
1 TAAAAG-GGCT
68985562 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:68985755 original size:42 final size:42
Alignment explanation
Indices: 68985696--68985787 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
68985686 TAGTCTCCCC
*
68985696 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
68985738 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
68985780 AAATGGGC
1 AAATGGGC
68985788 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:68985855 original size:31 final size:31
Alignment explanation
Indices: 68985811--68985925 Score: 180
Period size: 31 Copynumber: 3.8 Consensus size: 31
68985801 CGTTTACAGT
*
68985811 AAAA-GCTTCGGCCCAATGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
*
68985841 AAAAGGCTTTGGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
*
68985872 AAAAGGCTTCGGCTCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
*
68985903 GAAAGGCTTCGGCCCAGT-ATATG
1 AAAAGGCTTCGGCCCAGTGATATG
68985926 TGAAGACTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
30 9 0.12
31 69 0.88
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTGATATGATTTATG
Found at i:68988171 original size:24 final size:25
Alignment explanation
Indices: 68988105--68988171 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 25
68988095 CCGATATATC
*
68988105 AGCTCGTAAGAGCTTACT-ATTCTT
1 AGCTCATAAGAGCTTACTGATTCTT
*
68988129 AGCTCATAAGAGCTTACTGTTTC-T
1 AGCTCATAAGAGCTTACTGATTCTT
68988153 AGCTCA-ATAGAGCTTACTG
1 AGCTCATA-AGAGCTTACTG
68988172 CTCATTAGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 35 0.90
25 3 0.08
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (25 bp):
AGCTCATAAGAGCTTACTGATTCTT
Found at i:68989641 original size:19 final size:19
Alignment explanation
Indices: 68989617--68989680 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
68989607 TCAAGAATTC
68989617 TTTATCACCAACCAACAAT
1 TTTATCACCAACCAACAAT
* * *
68989636 TTTATCA-CTATCAAGAATT
1 TTTATCACCAACCAACAA-T
*
68989655 CTTTATCACCAACCTACAAT
1 -TTTATCACCAACCAACAAT
68989675 TTTATC
1 TTTATC
68989681 TCTTTTCGCT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 7 0.20
19 14 0.40
20 8 0.23
21 6 0.17
ACGTcount: A:0.36, C:0.27, G:0.02, T:0.36
Consensus pattern (19 bp):
TTTATCACCAACCAACAAT
Found at i:68989656 original size:39 final size:39
Alignment explanation
Indices: 68989602--68989680 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
68989592 TCCAAGGTGA
68989602 CACTATCAAGAATTCTTTATCACCAACCAACAATTTTAT
1 CACTATCAAGAATTCTTTATCACCAACCAACAATTTTAT
*
68989641 CACTATCAAGAATTCTTTATCACCAACCTACAATTTTAT
1 CACTATCAAGAATTCTTTATCACCAACCAACAATTTTAT
68989680 C
1 C
68989681 TCTTTTCGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.34
Consensus pattern (39 bp):
CACTATCAAGAATTCTTTATCACCAACCAACAATTTTAT
Found at i:68989661 original size:20 final size:20
Alignment explanation
Indices: 68989602--68989663 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
68989592 TCCAAGGTGA
68989602 CACTATCAAGAATTCTTTAT
1 CACTATCAAGAATTCTTTAT
* * *
68989622 CACCAACCAACAA-T-TTTAT
1 CA-CTATCAAGAATTCTTTAT
68989641 CACTATCAAGAATTCTTTAT
1 CACTATCAAGAATTCTTTAT
68989661 CAC
1 CAC
68989664 CAACCTACAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
18 7 0.21
19 8 0.24
20 11 0.33
21 7 0.21
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (20 bp):
CACTATCAAGAATTCTTTAT
Found at i:68995922 original size:41 final size:41
Alignment explanation
Indices: 68995870--68995968 Score: 121
Period size: 41 Copynumber: 2.4 Consensus size: 41
68995860 AGTGCCAAAG
* * *
68995870 CATAGCTGAAGCTATTATAAACTCGCACACTAAGTGCC-TTT
1 CATAGCCGAAGCTATT-CAAACTCACACACTAAGTGCCATTT
**
68995911 CATAGCCGAAGCTATCTCAGTCTCACACACTAAGTGCCATTT
1 CATAGCCGAAGCTAT-TCAAACTCACACACTAAGTGCCATTT
68995953 -ATAGCCGAAGCTATTC
1 CATAGCCGAAGCTATTC
68995969 CGATGCACAC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
40 2 0.04
41 45 0.88
42 4 0.08
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (41 bp):
CATAGCCGAAGCTATTCAAACTCACACACTAAGTGCCATTT
Found at i:68995996 original size:40 final size:41
Alignment explanation
Indices: 68995895--68996006 Score: 131
Period size: 41 Copynumber: 2.8 Consensus size: 41
68995885 TATAAACTCG
* *
68995895 CACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAGTCTCA
1 CACACTAAGTGCCTTTTATAGCCGAAGCTATCTCAGTCGCA
* *
68995936 CACACTAAGTGCCATTTATAGCCGAAGCTAT-TCCGAT-GCA
1 CACACTAAGTGCCTTTTATAGCCGAAGCTATCTCAG-TCGCA
* *
68995976 CACACTGAGTG-CTTTATATAGCCAAAGCTAT
1 CACACTAAGTGCCTTT-TATAGCCGAAGCTAT
68996007 ATCGATACGC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.05
40 29 0.47
41 30 0.48
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (41 bp):
CACACTAAGTGCCTTTTATAGCCGAAGCTATCTCAGTCGCA
Found at i:68998830 original size:40 final size:40
Alignment explanation
Indices: 68998666--68998830 Score: 192
Period size: 40 Copynumber: 4.1 Consensus size: 40
68998656 CGGAATTTAA
** *
68998666 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68998706 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
68998746 CCAGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
68998786 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68998826 CCGGA
1 CCGGA
68998831 CATCATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.04
40 91 0.86
41 11 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69014864 original size:31 final size:31
Alignment explanation
Indices: 69014820--69014921 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 31
69014810 CCTTTTCATA
*
69014820 TTTCATATCTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
69014857 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
69014889 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
69014920 TT
1 TT
69014922 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
31 32 0.52
32 1 0.02
33 1 0.02
37 1 0.02
38 27 0.44
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:69014904 original size:38 final size:38
Alignment explanation
Indices: 69014797--69014904 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
69014787 TCAATCATGC
* *
69014797 ACTGGGCCGTAGCCCTTTTCATATTTCATATCTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
69014836 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
69014874 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
69014905 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 54 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:69015163 original size:24 final size:24
Alignment explanation
Indices: 69015112--69015229 Score: 161
Period size: 24 Copynumber: 4.9 Consensus size: 24
69015102 GCTTTATCAT
*
69015112 ATAACTGGAGGCAT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
69015137 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTCA
*
69015161 ATAACTGGGGCATAAGCCCTTT-T
1 ATAACTGGGGCATAAGCCCTTTCA
*
69015184 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTCA
69015208 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
69015230 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 14 0.16
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:69015201 original size:47 final size:48
Alignment explanation
Indices: 69015112--69015230 Score: 181
Period size: 47 Copynumber: 2.5 Consensus size: 48
69015102 GCTTTATCAT
69015112 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCCAAAGCCCTTTCA
*
69015161 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGG-CATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
69015208 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
69015231 TCACTTCCTC
Statistics
Matches: 67, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.64
48 10 0.15
49 12 0.18
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCCAAAGCCCTTTCA
Found at i:69015306 original size:20 final size:20
Alignment explanation
Indices: 69015281--69015340 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
69015271 TATGATTACC
69015281 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
69015301 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
69015321 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
69015341 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:69026586 original size:25 final size:25
Alignment explanation
Indices: 69026557--69026604 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69026547 TTATAATATG
* * *
69026557 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
69026582 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
69026605 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:69026673 original size:20 final size:20
Alignment explanation
Indices: 69026648--69026706 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
69026638 TAAATATGGT
69026648 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
69026668 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
69026688 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
69026707 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:69026810 original size:23 final size:23
Alignment explanation
Indices: 69026757--69026873 Score: 143
Period size: 22 Copynumber: 5.0 Consensus size: 23
69026747 GAGGAAGTGA
69026757 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
69026780 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
69026802 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
69026825 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTA-T
*
69026849 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
69026873 A
1 A
69026874 TGATAAAGCA
Statistics
Matches: 84, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
22 31 0.37
23 23 0.27
24 20 0.24
25 10 0.12
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Done.