Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 230 of 328
Found at i:69026843 original size:46 final size:46
Alignment explanation
Indices: 69026757--69026873 Score: 152
Period size: 46 Copynumber: 2.5 Consensus size: 46
69026747 GAGGAAGTGA
69026757 AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATT
69026802 AAAAGGGCTTATG-CCCAGTTATTGAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T-AAAGGGCTTAT-GCCCCAGTTATT
*
69026849 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
69026874 TGATAAAGCA
Statistics
Matches: 64, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
44 8 0.12
45 15 0.23
46 19 0.30
47 10 0.16
48 5 0.08
49 7 0.11
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATT
Found at i:69027099 original size:31 final size:31
Alignment explanation
Indices: 69027064--69027165 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 31
69027054 CGTTTACAGT
69027064 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
69027095 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
*
69027133 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
69027164 AA
1 AA
69027166 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
31 30 0.49
33 1 0.02
36 1 0.02
38 29 0.48
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:69027133 original size:38 final size:38
Alignment explanation
Indices: 69027081--69027188 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
69027071 TCGGCCCAGT
69027081 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
69027119 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
69027157 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
69027189 GCATGATTGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 53 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:69046804 original size:50 final size:48
Alignment explanation
Indices: 69046717--69046914 Score: 171
Period size: 50 Copynumber: 4.0 Consensus size: 48
69046707 CGATTGTAGA
* * ** *
69046717 AAATTAAATATAATATCACATATGTGTATACCTATATGGCCGAATATGC
1 AAATCAAATATAACATCACATATGTACATACC-ATATGGCCGAATATAC
* * * **
69046766 AAGATCAAATTTAACATCAAATATGTACTTACTCATATGGCTAAATATAC
1 AA-ATCAAATATAACATCACATATGTACATAC-CATATGGCCGAATATAC
* * * * *
69046816 AAATTCAAATATAATATCACATTTGTGCATACCTTCATGGCCGAATATTC
1 AAA-TCAAATATAACATCACATATGTACATACCAT-ATGGCCGAATATAC
* * *
69046866 AAAATCCAATATAACATCACATATGTACATACCTATGTGGCCAAATATA
1 -AAATCAAATATAACATCACATATGTACATACC-ATATGGCCGAATATA
69046915 TACATAGTCA
Statistics
Matches: 115, Mismatches: 28, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
49 5 0.04
50 105 0.91
51 5 0.04
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (48 bp):
AAATCAAATATAACATCACATATGTACATACCATATGGCCGAATATAC
Found at i:69046912 original size:100 final size:99
Alignment explanation
Indices: 69046717--69046914 Score: 265
Period size: 100 Copynumber: 2.0 Consensus size: 99
69046707 CGATTGTAGA
* * *
69046717 AAATTAAATATAATATCACATATGTGTATACCTATATGGCCGAATATGCAAGATCAAATTTAACA
1 AAATTAAATATAATATCACATATGTGCATACCTATATGGCCGAATATGCAAAATCAAATATAACA
* *
69046782 TCAAATATGTACTTACTCATATGGCTAAATATAC
66 TCAAATATGTACATACTCATATGGCCAAATATAC
* * *
69046816 AAATTCAAATATAATATCACATTTGTGCATACCT-TCATGGCCGAATATTCAAAATCCAATATAA
1 AAATT-AAATATAATATCACATATGTGCATACCTAT-ATGGCCGAATATGCAAAATCAAATATAA
* *
69046880 CATCACATATGTACATAC-CTATGTGGCCAAATATA
64 CATCAAATATGTACATACTC-ATATGGCCAAATATA
69046915 TACATAGTCA
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
99 7 0.08
100 79 0.92
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (99 bp):
AAATTAAATATAATATCACATATGTGCATACCTATATGGCCGAATATGCAAAATCAAATATAACA
TCAAATATGTACATACTCATATGGCCAAATATAC
Found at i:69056289 original size:40 final size:40
Alignment explanation
Indices: 69056149--69056289 Score: 187
Period size: 40 Copynumber: 3.5 Consensus size: 40
69056139 ACCCAAGTTT
* * * *
69056149 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
69056188 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
69056228 CTTCGGGTCTTAGCCCAGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
69056268 CTTCGGGTCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
69056290 CATTCAAATG
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 77 0.88
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:69059291 original size:25 final size:27
Alignment explanation
Indices: 69059254--69059306 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
69059244 TCAAACATGC
69059254 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
69059280 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
69059306 A
1 A
69059307 AAACTGTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:69061256 original size:2 final size:2
Alignment explanation
Indices: 69061249--69061274 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
69061239 AAGTGTTTAG
69061249 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
69061275 TAATAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69062701 original size:48 final size:48
Alignment explanation
Indices: 69062630--69062938 Score: 528
Period size: 48 Copynumber: 6.4 Consensus size: 48
69062620 AGATAAATAT
*
69062630 ATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69062678 ATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69062726 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69062774 ATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69062822 ATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69062870 ATATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69062918 ATATGTATATGCGGTAAAGCC
1 ATATGTATATGTGGTAAAGCC
69062939 ATTCATGTAT
Statistics
Matches: 249, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 249 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:69062745 original size:96 final size:96
Alignment explanation
Indices: 69062630--69063258 Score: 753
Period size: 96 Copynumber: 6.3 Consensus size: 96
69062620 AGATAAATAT
* *
69062630 ATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATGTATATGAGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
69062695 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
69062726 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATACGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
69062791 AACCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
69062822 ATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
69062887 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
69062918 ATATGTATATGCGGTAAAGCC-ATTCAT-G-TATATGAGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATGTATATGTGGTAAAGCCGA---ATGGCTA-ATG-TG-AAA----TAT-G-T-A--TGAGAT
* * * * * *
69062980 ATGTATGA-GATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
51 ATGTAT-ATG-T-GGTA-AAGCCG-AATGGCTAAT-------GTGAAATATGTATGAG
* *
69063037 ATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
69063102 AGCCGAATGGCTAGTGTGAACTATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
*
69063133 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
69063198 AGCCGAATGGCTAATGCGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
*
69063229 ATATGCATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
69063259 GTGATTCGGC
Statistics
Matches: 459, Mismatches: 43, Indels: 62
0.81 0.08 0.11
Matches are distributed among these distances:
95 1 0.00
96 335 0.73
97 4 0.01
98 3 0.01
99 3 0.01
103 8 0.02
104 5 0.01
105 4 0.01
106 3 0.01
107 12 0.03
108 12 0.03
109 3 0.01
110 4 0.01
111 5 0.01
112 9 0.02
116 3 0.01
117 3 0.01
118 3 0.01
119 38 0.08
120 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:69062890 original size:144 final size:144
Alignment explanation
Indices: 69062630--69063258 Score: 753
Period size: 144 Copynumber: 4.2 Consensus size: 144
69062620 AGATAAATAT
* *
69062630 ATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATGTATATGAGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
69062695 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
69062760 GAACTATGTATGAG
131 GAAATATGTATGAG
* * *
69062774 ATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
69062839 AACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
69062904 GAAATATGTATGAG
131 GAAATATGTATGAG
* * * *
69062918 ATATGTATATGCGGTAAAGCC-ATTCAT-G-TATATGAGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATGTATATGTGGTAAAGCCGA---ATGGCTA-ATG-TG-AAA----TAT-G-T-A--TGAGAT
* * * * * *
69062980 ATGTATGA-GATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
51 ATGTAT-ATG-T-GGTA-AAGCCG-AATG--G-CTA----ATGTGAAATATGTATGAGATATGTA
* *
69063044 TATGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
104 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69063085 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
69063150 AGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGC
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
69063215 GAAATATGTATGAG
131 GAAATATGTATGAG
*
69063229 ATATGCATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
69063259 GTGATTCGGC
Statistics
Matches: 412, Mismatches: 42, Indels: 62
0.80 0.08 0.12
Matches are distributed among these distances:
143 1 0.00
144 246 0.60
145 4 0.01
146 3 0.01
147 3 0.01
148 1 0.00
149 1 0.00
151 5 0.01
152 5 0.01
153 4 0.01
154 3 0.01
155 12 0.03
156 12 0.03
157 3 0.01
158 4 0.01
159 4 0.01
160 5 0.01
162 1 0.00
163 1 0.00
164 2 0.00
165 3 0.01
166 3 0.01
167 85 0.21
168 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATGTATGAG
Found at i:69062988 original size:71 final size:71
Alignment explanation
Indices: 69062872--69063009 Score: 258
Period size: 71 Copynumber: 1.9 Consensus size: 71
69062862 TGTATGAGAT
*
69062872 ATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
1 ATGTATACGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
69062937 CCATTC
66 CCATTC
*
69062943 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
1 ATGTATACGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
69063008 CC
66 CC
69063010 GAATGGCTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 65 1.00
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (71 bp):
ATGTATACGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
CCATTC
Found at i:69063014 original size:48 final size:48
Alignment explanation
Indices: 69062943--69063258 Score: 551
Period size: 48 Copynumber: 6.6 Consensus size: 48
69062933 AAAGCCATTC
*
69062943 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
69062991 ATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* *
69063039 ATGTATATGAGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
1 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* *
69063087 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGAT
1 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
69063135 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAT
1 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
69063183 ATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGAT
1 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
69063231 ATGCATATGTGGTAAAGCCGAATGGCTA
1 ATGTATATGTGGTAAAGCCGAATGGCTA
69063259 GTGATTCGGC
Statistics
Matches: 257, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 257 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:69063035 original size:119 final size:119
Alignment explanation
Indices: 69062824--69063057 Score: 414
Period size: 119 Copynumber: 2.0 Consensus size: 119
69062814 TGTATGAGAT
* *
69062824 ATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAG
1 ATGTATACGAGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAG
*
69062889 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCATTC
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCATTC
* * *
69062943 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
1 ATGTATACGAGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAG
69063008 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCC
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCC
69063058 GAATGGCTAG
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 109 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (119 bp):
ATGTATACGAGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAG
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCATTC
Found at i:69063055 original size:167 final size:167
Alignment explanation
Indices: 69062776--69063105 Score: 570
Period size: 167 Copynumber: 2.0 Consensus size: 167
69062766 TGTATGAGAT
* *
69062776 ATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAA
1 ATGTATACGAGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAA
*
69062841 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAATGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAGCCGAATGGCTAATGTGA
69062906 AATATGTATGAGATATGTATATGCGGTAAAGCCATTC
131 AATATGTATGAGATATGTATATGCGGTAAAGCCATTC
* * * *
69062943 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
1 ATGTATACGAGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAA
* *
69063008 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAGCCGAATGGCTAATGTGA
*
69063073 AATATGTATGAGATATGTATATGTGGTAAAGCC
131 AATATGTATGAGATATGTATATGCGGTAAAGCC
69063106 GAATGGCTAG
Statistics
Matches: 153, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
167 153 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.29
Consensus pattern (167 bp):
ATGTATACGAGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAA
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAGCCGAATGGCTAATGTGA
AATATGTATGAGATATGTATATGCGGTAAAGCCATTC
Found at i:69063101 original size:215 final size:215
Alignment explanation
Indices: 69062728--69063153 Score: 726
Period size: 215 Copynumber: 2.0 Consensus size: 215
69062718 TGTATGAGAT
* * * *
69062728 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATACGTGGTAAAA
1 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAA
*
69062793 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAACCGAATGGCTAATGTGA
69062858 AATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
131 AATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
69062923 TATATGCGGTAAAGCCATTC
196 TATATGCGGTAAAGCCATTC
* *
69062943 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
1 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAA
* * *
69063008 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAACCGAATGGCTAATGTGA
* * *
69063073 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATG
131 AATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
69063138 TATATGTGGTAAAGCC
196 TATATGCGGTAAAGCC
69063154 GAATGGCTAA
Statistics
Matches: 197, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
215 197 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (215 bp):
ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGCGGTAAAA
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAACCGAATGGCTAATGTGA
AATATGTATGAGATATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
TATATGCGGTAAAGCCATTC
Found at i:69063149 original size:263 final size:263
Alignment explanation
Indices: 69062680--69063201 Score: 918
Period size: 263 Copynumber: 2.0 Consensus size: 263
69062670 TGTATGAGAT
*
69062680 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
1 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
* * *
69062745 CCGAATGGCTAGTGTGAACTATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAACCGAATGGCTAATGTGA
69062810 AATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
131 AATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
*
69062875 TATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCA
196 TATACGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGCGGTAAAGCCA
69062940 TTC
261 TTC
69062943 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
1 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
* * *
69063008 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAACCGAATGGCTAATGTGA
* * * *
69063073 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATG
131 AATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
69063138 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
196 TATACGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGCGGTAAAGCC
69063202 GAATGGCTAA
Statistics
Matches: 245, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
263 245 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (263 bp):
ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGAGGTAAAACCGAATGGCTAATGTGA
AATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
TATACGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGCGGTAAAGCCA
TTC
Found at i:69063197 original size:311 final size:311
Alignment explanation
Indices: 69062632--69063249 Score: 1092
Period size: 311 Copynumber: 2.0 Consensus size: 311
69062622 ATAAATATAT
*
69062632 ATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAG
1 ATGTATATGAGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAG
*
69062697 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGA
*
69062762 ACTATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
131 AATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
*
69062827 TATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAGCCG
196 TATACGTGGTAAAACCGAATGGCTAATGTGAAATATATATGAGATATGTATACGTGGTAAAGCCG
* *
69062892 AATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCATTC
261 AATGGCTAATGCGAAATATGTATGAGATATGCATATGCGGTAAAGCCATTC
* *
69062943 ATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAG
1 ATGTATATGAGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAG
69063008 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGA
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGA
* * * *
69063073 AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATG
131 AATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
69063138 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
196 TATACGTGGTAAAACCGAATGGCTAATGTGAAATATATATGAGATATGTATACGTGGTAAAGCCG
*
69063203 AATGGCTAATGCGAAATATGTATGAGATATGCATATGTGGTAAAGCC
261 AATGGCTAATGCGAAATATGTATGAGATATGCATATGCGGTAAAGCC
69063250 GAATGGCTAG
Statistics
Matches: 291, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
311 291 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (311 bp):
ATGTATATGAGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAG
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGAGGTAAAGCCGAATGGCTAGTGTGA
AATATGTATGAGATATGTATACGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATG
TATACGTGGTAAAACCGAATGGCTAATGTGAAATATATATGAGATATGTATACGTGGTAAAGCCG
AATGGCTAATGCGAAATATGTATGAGATATGCATATGCGGTAAAGCCATTC
Found at i:69063483 original size:37 final size:37
Alignment explanation
Indices: 69063431--69063533 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
69063421 GGAAATATAT
*
69063431 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
69063468 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69063505 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
69063534 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69068596 original size:40 final size:40
Alignment explanation
Indices: 69068538--69068705 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
69068528 CAATTGAATG
* *
69068538 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
69068579 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
69068618 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
69068658 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
69068698 ATATCCGG
1 ATATCCGG
69068706 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:69068676 original size:80 final size:79
Alignment explanation
Indices: 69068538--69068705 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
69068528 CAATTGAATG
* * *
69068538 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
69068603 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
69068618 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
69068682 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
69068698 ATATCCGG
1 ATATCCGG
69068706 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:69076600 original size:40 final size:40
Alignment explanation
Indices: 69076542--69076709 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
69076532 CAATTGAATG
* *
69076542 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
69076583 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
69076622 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
69076662 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
69076702 ATATCCGG
1 ATATCCGG
69076710 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:69076680 original size:80 final size:79
Alignment explanation
Indices: 69076542--69076709 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
69076532 CAATTGAATG
* * *
69076542 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
69076607 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
69076622 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
69076686 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
69076702 ATATCCGG
1 ATATCCGG
69076710 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:69080042 original size:46 final size:47
Alignment explanation
Indices: 69079952--69080043 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 47
69079942 AGACAACATT
* * *
69079952 TGGGACGTTGGCATCGATTTGAGATTTACGTGTAAGACTATGTCTGTC
1 TGGGACATCGGCATCGATTT-AGATTTACGTGTAAGACCATGTCTGTC
*
69080000 TGGGACATCGGCATCGTATTT-GATTTA-GTGTAAGACCCTGTCTG
1 TGGGACATCGGCATCG-ATTTAGATTTACGTGTAAGACCATGTCTG
69080044 AGGATAGTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 15 0.38
47 6 0.15
48 14 0.36
49 4 0.10
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (47 bp):
TGGGACATCGGCATCGATTTAGATTTACGTGTAAGACCATGTCTGTC
Found at i:69082141 original size:46 final size:46
Alignment explanation
Indices: 69082074--69082245 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
69082064 AACCCGCCCC
*
69082074 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
69082120 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
69082168 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
69082213 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
69082246 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:69082186 original size:93 final size:93
Alignment explanation
Indices: 69082079--69082249 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
69082069 GCCCCTAAGT
* *
69082079 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69082144 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
69082172 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69082237 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69082250 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69082706 original size:30 final size:30
Alignment explanation
Indices: 69082672--69082731 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69082662 ATTTAATACG
69082672 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69082702 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69082732 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69087636 original size:23 final size:23
Alignment explanation
Indices: 69087610--69087653 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
69087600 ATTGGTTTGG
*
69087610 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGAT-ATGAAATAGATGAGT
*
69087633 TTTGTGATATGAAATAGATGA
1 TTTGAGATATGAAATAGATGA
69087654 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.27, T:0.39
Consensus pattern (23 bp):
TTTGAGATATGAAATAGATGAGT
Found at i:69090128 original size:58 final size:59
Alignment explanation
Indices: 69090022--69090176 Score: 161
Period size: 58 Copynumber: 2.7 Consensus size: 59
69090012 AATAATACTA
* * * * * *
69090022 CATATGTTGCAGATAGAATTTAGCCCGGACGGGTAAT-TCTAATGTAAGCCCTCTTGAG
1 CATATGCTACAGATAGGATTTAGCCCGGACGGGTAATCCCAAATGTAAGCCCTCTAGAG
* * * * * *
69090080 CTTATGTTATAGATTGGATTTAGCCCAGACGGGTAATCCCAAAT-TAAGCTCTCTAGAG
1 CATATGCTACAGATAGGATTTAGCCCGGACGGGTAATCCCAAATGTAAGCCCTCTAGAG
* * *
69090138 CATATGCTACGGATAGGATTTAGCCTGGACTGGTAATCC
1 CATATGCTACAGATAGGATTTAGCCCGGACGGGTAATCC
69090177 TACTGTAAAA
Statistics
Matches: 78, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
58 74 0.95
59 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (59 bp):
CATATGCTACAGATAGGATTTAGCCCGGACGGGTAATCCCAAATGTAAGCCCTCTAGAG
Found at i:69095457 original size:37 final size:37
Alignment explanation
Indices: 69095401--69095579 Score: 279
Period size: 37 Copynumber: 4.9 Consensus size: 37
69095391 TCAGACGAAG
* * *
69095401 TCTCCACACGAAGTTATCGGATCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
69095438 TCTCCACACGTAGTCATCGGGTCTTACCTGAACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
69095475 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
69095512 TCTCCACACGTAGTCATCGGGTCTTACCCAGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
69095549 TCT-CACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
69095580 ATATATTTCC
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
36 27 0.20
37 105 0.80
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:69095779 original size:48 final size:48
Alignment explanation
Indices: 69095725--69095918 Score: 334
Period size: 48 Copynumber: 4.0 Consensus size: 48
69095715 GCACATCGCC
* * *
69095725 TACATATTTCACACTAGCCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
69095773 TACATATCTCACATTAGCCATTCGGCTTTACCACAAATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69095821 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69095869 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69095917 TA
1 TA
69095919 TTCACCACAT
Statistics
Matches: 137, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 137 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69095952 original size:48 final size:45
Alignment explanation
Indices: 69095727--69095987 Score: 267
Period size: 48 Copynumber: 5.6 Consensus size: 45
69095717 ACATCGCCTA
* * *
69095727 CATATT-TCACACTAGCCATTCAGCTTTACCACATATGCATATCT
1 CATATTCTCACATTAGCCATTCGGCTTTACCACATATACATATCT
*
69095771 CATACATATCTCACATTAGCCATTCGGCTTTACCACAAATACATATCT
1 CAT--AT-TCTCACATTAGCCATTCGGCTTTACCACATATACATATCT
*
69095819 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACCTCAT
1 CAT--AT-TCTCACATTAGCCATTCGGCTTTACCACATATACATA--TC-T
69095870 ACATATT-TCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 -CATATTCTCACATTAGCCATTCGGCTTTACCACATATACATATCT
* * * * *
69095915 CATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCT
1 CATATTC-TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCT
* *
69095962 CACATTCATCACATTGGCCATTCGGC
1 CATATTC-TCACATTAGCCATTCGGC
69095988 CTTATCTCTA
Statistics
Matches: 192, Mismatches: 13, Indels: 21
0.85 0.06 0.09
Matches are distributed among these distances:
44 9 0.05
45 1 0.01
46 23 0.12
47 28 0.15
48 122 0.64
49 1 0.01
50 4 0.02
51 1 0.01
52 3 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (45 bp):
CATATTCTCACATTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:69095952 original size:96 final size:95
Alignment explanation
Indices: 69095734--69095987 Score: 295
Period size: 96 Copynumber: 2.7 Consensus size: 95
69095724 CTACATATTT
* * * * *
69095734 CACACTAGCCATTCAGCTTTACCACATATGCATATCTCATACATATCTCACATTAGCCATTCGGC
1 CACATTAGCCATTCGGCCTTACCACATATACATACCTCATACATATCTCACATTAGCCATTCGGC
**
69095799 TTTACCACAAATACATATCTCATACATATTT
66 TTTACCACAAATACATATCTCATA-ATATAC
* *
69095830 CACATTAGCCATTCGGCTTTACCACATATACATACCTCATACATATTTCACATTAGCCATTCGGC
1 CACATTAGCCATTCGGCCTTACCACATATACATACCTCATACATATCTCACATTAGCCATTCGGC
*
69095895 TTTACCACATATACATATCTCAT-AT-TCAC
66 TTTACCACAAATACATATCTCATAATAT-AC
* * * *
69095924 CACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATTC
1 CACATTAGCCATTCGGCCTTA-C-CACATATACATACCTCATACATATC-TCACATTAGCCATTC
69095985 GGC
63 GGC
69095988 CTTATCTCTA
Statistics
Matches: 140, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
92 1 0.01
93 22 0.16
94 21 0.15
95 4 0.03
96 92 0.66
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (95 bp):
CACATTAGCCATTCGGCCTTACCACATATACATACCTCATACATATCTCACATTAGCCATTCGGC
TTTACCACAAATACATATCTCATAATATAC
Found at i:69099568 original size:40 final size:40
Alignment explanation
Indices: 69099523--69099696 Score: 231
Period size: 40 Copynumber: 4.3 Consensus size: 40
69099513 CGAATACACG
* * * * *
69099523 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* **
69099563 ACACCAGCACGAATGCTCTTCGAAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
69099603 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
69099643 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
69099683 TCACTAACACGAAT
1 TCACCAGCACGAAT
69099697 TCTTCACTCT
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:69102400 original size:40 final size:39
Alignment explanation
Indices: 69102250--69102402 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
69102240 AAATGTTCGA
* *
69102250 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
69102289 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
69102328 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
69102367 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
69102403 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:69102418 original size:40 final size:39
Alignment explanation
Indices: 69102251--69102433 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69102241 AATGTTCGAG
* * *
69102251 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
69102290 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
69102329 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
69102368 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
69102408 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
69102434 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:69102469 original size:79 final size:79
Alignment explanation
Indices: 69102257--69102471 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
69102247 CGAGTGATAT
** * * * * * *
69102257 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
69102320 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
69102335 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
69102400 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
69102414 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
69102472 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:69110333 original size:39 final size:39
Alignment explanation
Indices: 69110278--69110431 Score: 227
Period size: 39 Copynumber: 3.9 Consensus size: 39
69110268 AAATGTTCGA
* * *
69110278 GTGATATCCGGGGCTAAGCCCAAAGGCAATTGTGCAAATT
1 GTGATATCC-GGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
69110318 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
69110357 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
69110396 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
69110432 GTTACCATAA
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 79 0.76
40 25 0.24
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:69110376 original size:78 final size:78
Alignment explanation
Indices: 69110279--69110461 Score: 242
Period size: 78 Copynumber: 2.3 Consensus size: 78
69110269 AATGTTCGAG
69110279 TGATATCCGGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAG-CCCGAAGG
1 TGATATCC-GGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGG
69110343 CAATTGTGCGAGTTA
65 CAATTGTGCG-GTTA
* * * * *
69110358 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
*
69110423 ATTTGTGCGGTTA
66 AATTGTGCGGTTA
** * *
69110436 CCATAACCGGGCTATGTCCCAAAGGC
1 TGATATCCGGGCTAAG-CCCAAAGGC
69110462 GTTTGAACGA
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 58 0.64
79 33 0.36
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGGTTA
Found at i:69110461 original size:39 final size:39
Alignment explanation
Indices: 69110279--69110449 Score: 218
Period size: 39 Copynumber: 4.4 Consensus size: 39
69110269 AATGTTCGAG
* * * *
69110279 TGATATCCGGGGCTAAGCCCAAAGGCAATTGTGCAAATTG
1 TGATATCC-GGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
69110319 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
69110358 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
69110397 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG-GTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
69110436 CCATAACCGGGCTA
1 TGATATCCGGGCTA
69110450 TGTCCCAAAG
Statistics
Matches: 116, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 92 0.79
40 24 0.21
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:69110482 original size:79 final size:78
Alignment explanation
Indices: 69110288--69110485 Score: 193
Period size: 78 Copynumber: 2.5 Consensus size: 78
69110278 GTGATATCCG
** * * * *
69110288 GGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCG
1 GGGCTAAGCCCAAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
** *
69110353 AGTTATGATATCC
66 AGTTACCATAACC
* ** * * *
69110366 GGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 GGGCTAAGCCCAAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGC
69110431 G-GTTACCATAACC
65 GAGTTACCATAACC
* **
69110444 GGGCTATGTCCCAAAGGCGTTTGAACGAGTAGCT-ATATCCGG
1 GGGCTAAG-CCCAAAGGCAATTGAACGAGTAG-TGATATCCGG
69110486 ATAAACTCCA
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 58 0.57
79 42 0.42
80 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (78 bp):
GGGCTAAGCCCAAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
AGTTACCATAACC
Found at i:69112276 original size:37 final size:37
Alignment explanation
Indices: 69112220--69112399 Score: 288
Period size: 37 Copynumber: 4.9 Consensus size: 37
69112210 TCAGACGAAG
* *
69112220 TCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
69112257 TCTCCACACGTAGTCATCGGGTCTTACCCGGATAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
69112294 TCTCCACACGTAGTCATAGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* * *
69112331 TCTCCACACGTAGTCATCAGGTCTTACCCAGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
69112368 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
69112400 ATATTTTTCC
Statistics
Matches: 132, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 132 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:69112674 original size:48 final size:48
Alignment explanation
Indices: 69112545--69112788 Score: 391
Period size: 48 Copynumber: 5.0 Consensus size: 48
69112535 GCACATCGCC
*
69112545 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
69112595 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
69112643 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
69112691 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATACCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69112739 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69112787 TA
1 TA
69112789 TTCACCACAT
Statistics
Matches: 179, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
48 136 0.76
49 2 0.01
50 41 0.23
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69112822 original size:48 final size:46
Alignment explanation
Indices: 69112603--69112939 Score: 292
Period size: 48 Copynumber: 7.1 Consensus size: 46
69112593 TATATATATT
* * *
69112603 TCACATTGACCATTCAGCTTTACCACATATGCATATCTCATACATATC-
1 TCACATTGGCCATTCGGCTTTACCACATATACATATCTCAT--AT-TCA
* *
69112651 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCTTTACCACATATACATATCTCAT--AT-TCA
* *
69112699 TCACATTAGCCATTTGGCTTTACCACATATACATACCTCATACATATT--
1 TCACATTGGCCATTCGGCTTTACCACATATACATA--TC-T-CATATTCA
*
69112747 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATTCA
1 TCACATTGGCCATTCGGCTTTACCACATATACATATCTCATATTCA
* * * * *
69112793 CCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
1 TCACATTGGCCATTCGGCTTTA-C-CACATATACATATCTCATATTCA
* * * *
69112840 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCACATTCA
1 TCACATTGGCCATTCGGCTTTACCACATATA--CATATCTCATATTCA
* * * *
69112887 TCACATTGGCCATTCGGCCTTATCTCATATATACACAT-TCACATTCA
1 TCACATTGGCCATTCGGCTTTA-C-CACATATACATATCTCATATTCA
69112934 TCACAT
1 TCACAT
69112940 AAAATCCTAA
Statistics
Matches: 255, Mismatches: 20, Indels: 29
0.84 0.07 0.10
Matches are distributed among these distances:
44 6 0.02
45 8 0.03
46 21 0.08
47 83 0.33
48 121 0.47
49 8 0.03
50 4 0.02
51 1 0.00
52 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCTTTACCACATATACATATCTCATATTCA
Found at i:69112822 original size:96 final size:95
Alignment explanation
Indices: 69112545--69112917 Score: 393
Period size: 96 Copynumber: 3.9 Consensus size: 95
69112535 GCACATCGCC
* *
69112545 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT-CA--TCACATT
* * * * *
69112610 GACCATTCAGCTTTACCACATATGCATATCTCA
63 GGCCATTCGGCCTTACCACATATACATACCTCA
* * *
69112643 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-TTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT--ATATCATCACATTG
* *
69112707 GCCATTTGGCTTTACCACATATACATACCTCA
64 GCCATTCGGCCTTACCACATATACATACCTCA
*
69112739 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT-TCACCACATTGGC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATCATCACATTGGC
* *
69112803 CATTCGGCCTTATCACACATATGCAT-GCTC-
66 CATTCGGCCTTA-C-CACATATACATACCTCA
* * * * * *
69112833 -ACAT-TCATCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCACAT-TCATCACATT
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATA--CATATCTCATATATCATCACATT
* *
69112894 GGCCATTCGGCCTTATCTCATATA
63 GGCCATTCGGCCTTACCACATATA
69112918 TACACATTCA
Statistics
Matches: 240, Mismatches: 27, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
92 7 0.03
93 33 0.14
94 49 0.20
95 8 0.03
96 92 0.38
98 47 0.20
100 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (95 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATCATCACATTGGC
CATTCGGCCTTACCACATATACATACCTCA
Found at i:69112845 original size:47 final size:47
Alignment explanation
Indices: 69112747--69112939 Score: 237
Period size: 47 Copynumber: 4.1 Consensus size: 47
69112737 CATACATATT
* * * *
69112747 TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACAT-GCTCACATTCA
* *
69112793 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
* * *
69112840 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
* * ***
69112887 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
69112934 TCACAT
1 TCACAT
69112940 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
46 19 0.14
47 103 0.78
48 10 0.08
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
Found at i:69112866 original size:22 final size:22
Alignment explanation
Indices: 69112839--69112910 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
69112829 GCTCACATTC
69112839 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
69112861 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
69112885 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
69112908 ATC
1 ATC
69112911 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:69114503 original size:2 final size:2
Alignment explanation
Indices: 69114496--69114523 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
69114486 TCATGTGCAA
69114496 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69114524 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69117914 original size:80 final size:80
Alignment explanation
Indices: 69117823--69117974 Score: 277
Period size: 80 Copynumber: 1.9 Consensus size: 80
69117813 CCAGCTCGTA
69117823 GCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 GCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
69117888 ACATTCCAGCATATT
66 ACATTCCAGCATATT
* **
69117903 GCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGGTCGGATA
1 GCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
69117968 ACATTCC
66 ACATTCC
69117975 TCAAGTATCA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
GCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
ACATTCCAGCATATT
Found at i:69117974 original size:40 final size:40
Alignment explanation
Indices: 69117795--69117959 Score: 219
Period size: 40 Copynumber: 4.2 Consensus size: 40
69117785 CCTACGGGAA
* * * * *
69117795 TTTAAACCCGG-TATAATACCAGCTCGTAGCCTGCGGGTC
1 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
*
69117834 TTTAAGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTC
1 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
* *
69117874 TTTAAGCCCGGATA-ACATTCCAGCA-TATTGCCTGCGGGTC
1 TTTAAGCCCGGATACA-ATTCCAGCACGA-AGCCTGCGGGTC
69117914 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
1 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
69117954 TTTAAG
1 TTTAAG
69117960 GTCGGATAAC
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 11 0.10
40 97 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
Found at i:69120147 original size:50 final size:50
Alignment explanation
Indices: 69119913--69120148 Score: 206
Period size: 50 Copynumber: 4.7 Consensus size: 50
69119903 CTGGTATGCA
* * *
69119913 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTAGTACACG
* * *
69119962 TAGTAGCCTGCATTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTAGTACACG
* * * * *** ** *
69120012 TAGTAGCCTGCACTTAGTACTATACACATGA-TTGAAGTTATGGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTAGTACACG
* * * ** ** *
69120063 TAGTAACCTGCACTTAGTACTGCACATGCAACCTAACTATCCGGTACTCG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTAGTACACG
* *
69120113 TAGTAGCTTGCACTTAGTACGACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
69120149 AACCATTTTA
Statistics
Matches: 144, Mismatches: 39, Indels: 7
0.76 0.21 0.04
Matches are distributed among these distances:
49 31 0.22
50 81 0.56
51 31 0.22
52 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTAGTACACG
Found at i:69120189 original size:151 final size:149
Alignment explanation
Indices: 69119905--69120192 Score: 382
Period size: 151 Copynumber: 1.9 Consensus size: 149
69119895 GAAGCTATCT
* * *
69119905 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTAGTACACGTAGTAGCC
1 GGTATGCATAGTAACCTGCACTTAGTACTACACATGCAACCAACAATCCAGTACACGTAGTAGCC
* * * * * *
69119970 TGCATTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTAT
66 TGCACTTAGTACGACACACGTGACCTAACCATCTAATACACATAGAAGCCTACACATAGTAC-AT
69120035 ACACATGATTGAAGTTATGG
130 ACACATGATTGAAGTTATGG
* * * *
69120055 GGTATGCATAGTAACCTGCACTTAGTACTGCACATGCAACCTAACTATCCGGTACTCGTAGTAGC
1 GGTATGCATAGTAACCTGCACTTAGTACTACACATGCAACC-AACAATCCAGTACACGTAGTAGC
* *
69120120 TTGCACTTAGTACGACACACGTGACCTAAAACCATTTTAA-ACACATAGAAGCCTACACATAGTA
65 CTGCACTTAGTACGACACACGTGACCT--AACCA-TCTAATACACATAGAAGCCTACACATAGTA
69120184 C-TACACATG
127 CATACACATG
69120193 TGTTCTCTAT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
150 38 0.32
151 51 0.43
153 26 0.22
154 4 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (149 bp):
GGTATGCATAGTAACCTGCACTTAGTACTACACATGCAACCAACAATCCAGTACACGTAGTAGCC
TGCACTTAGTACGACACACGTGACCTAACCATCTAATACACATAGAAGCCTACACATAGTACATA
CACATGATTGAAGTTATGG
Found at i:69121293 original size:131 final size:131
Alignment explanation
Indices: 69121155--69121406 Score: 353
Period size: 131 Copynumber: 1.9 Consensus size: 131
69121145 TAGAAGATAT
* * *
69121155 GAATGAAATTTT-AAAGGGGTACTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTT
1 GAATGAAATTTTGAAA-GGATACTCGATTACTTTGAGCAAACACGAAATTGCAACCCAACACGTT
* * *
69121219 AGAGCACAATTCTGCGAATTGCTAAATATCAAACCTCGTCTTCATTTTGAGGAATTTCAAAAGAC
65 AGAGCACAATTCTGCGAATTGCCAAACATCAAACCTCGTCTTCATTTTGAAGAATTTCAAAAGAC
69121284 AC
130 AC
* * * *
69121286 GAATGAAATTTTGAAATGATATTTGATTACTTTGAGCAAACACGAAATTGCAACCGAACACGTTA
1 GAATGAAATTTTGAAAGGATACTCGATTACTTTGAGCAAACACGAAATTGCAACCCAACACGTTA
* * * * *
69121351 GGGCACGATTCTGCGAATTTCCAAACATCGAATCTCGTCTTCATTTTGAAGAATTT
66 GAGCACAATTCTGCGAATTGCCAAACATCAAACCTCGTCTTCATTTTGAAGAATTT
69121407 TTGAATGAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
131 102 0.97
132 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (131 bp):
GAATGAAATTTTGAAAGGATACTCGATTACTTTGAGCAAACACGAAATTGCAACCCAACACGTTA
GAGCACAATTCTGCGAATTGCCAAACATCAAACCTCGTCTTCATTTTGAAGAATTTCAAAAGACA
C
Found at i:69122789 original size:2 final size:2
Alignment explanation
Indices: 69122782--69122808 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
69122772 TGCATGTACA
69122782 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
69122809 GATTTGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69125153 original size:132 final size:132
Alignment explanation
Indices: 69124825--69125171 Score: 509
Period size: 133 Copynumber: 2.6 Consensus size: 132
69124815 TCTACAACCG
* * *
69124825 TCAGCCTACTCCACTACAACTTTAGGGAGCTAGGGTGATGGCTTAAATCTACTTCACTGCAACAT
1 TCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTG-TGGCTTAAATCTGCTTCACTGCAACTT
* * *
69124890 CAGGAAGCCTAGATTCACCGTCTTTGATCTGTTCCACTGCAATCTCAAGGAAACAAAATCTACAA
65 CAGGAAGCCTAGATTCGCCGTCTTTGATCTGCTCCACTGCAATCTCAAGGAAACAAAATCTAAAA
69124955 TTC
130 TTC
* * *
69124958 TCAGCCTACTCCACTACAACCTTAGGGAGCTAGGTTGGTGGCTTAAATCCGCCTCACTGCAACTT
1 TCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTT-GTGGCTTAAATCTGCTTCACTGCAACTT
* * *
69125023 CAGGAAGCCTAGATTCGCCGTCTTTGATCTGCTCCACTGCAA-CTTCAGGGAAACGAGATCTAAA
65 CAGGAAGCCTAGATTCGCCGTCTTTGATCTGCTCCACTGCAATC-TCAAGGAAACAAAATCTAAA
69125087 ATT-
129 ATTC
* *
69125090 TCAGCCTACTCCACTACAACTTTAGGGAGTTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTT
1 TCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTT-GTGGCTTAAATCTGCTTCACTGCAACTT
*
69125155 CAGGAAGCCAAGATTCG
65 CAGGAAGCCTAGATTCG
69125172 TCATCTTGCT
Statistics
Matches: 193, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
132 76 0.39
133 116 0.60
134 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (132 bp):
TCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGTGGCTTAAATCTGCTTCACTGCAACTTC
AGGAAGCCTAGATTCGCCGTCTTTGATCTGCTCCACTGCAATCTCAAGGAAACAAAATCTAAAAT
TC
Found at i:69137135 original size:131 final size:130
Alignment explanation
Indices: 69136977--69137301 Score: 346
Period size: 131 Copynumber: 2.5 Consensus size: 130
69136967 TGTTCGATCG
* * * * * * * *
69136977 TTTTGAACAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATT-CTCGAATTGTCAAACGCC
1 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTG-CAAACACC
* * * * * * * * * * *
69137041 GAATATTGCCTTCGTTTTAAATAATTTTTAGAATATATGAATGAAATTTTGAAGGGGTACTCGAT
65 AAACATCGCCTTCATTTTAAAGAA-TTTCAAAAGACAAGAATGAAATTTTGAAGGGATACTCGAT
69137106 TA
129 TA
* * *
69137108 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGAGCACGATTCCGCGAATTGCTAAATATC
1 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGC-AAACACC
* * * * *
69137173 AAACCTCGTCTTCATTTTGAAGAATTTCAAAAGACAAGAATGAAATTTTGAAGTGATATTCGATT
65 AAACATCGCCTTCATTTTAAAGAATTTCAAAAGACAAGAATGAAATTTTGAAGGGATACTCGATT
69137238 A
130 A
* *
69137239 CTTTGAGCAAACACGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACA
1 TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTG-CAAACA
69137302 TTGAATCTCG
Statistics
Matches: 160, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
131 131 0.82
132 29 0.18
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (130 bp):
TTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCAAACACCA
AACATCGCCTTCATTTTAAAGAATTTCAAAAGACAAGAATGAAATTTTGAAGGGATACTCGATTA
Found at i:69137313 original size:131 final size:131
Alignment explanation
Indices: 69137079--69137330 Score: 396
Period size: 131 Copynumber: 1.9 Consensus size: 131
69137069 TAGAATATAT
* * *
69137079 GAATGAAATTTTGAAGGGGTACTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTA
1 GAATGAAATTTTGAAGGGATACTCGATTACTTTGAGCAAACACGAAATTGCAACCCAACACGTTA
* *
69137144 GAGCACGATTCCGCGAATTGCTAAATATCAAACCTCGTCTTCATTTTGAAGAATTTCAAAAGACA
66 GAGCACGATTCCGCGAATTGCCAAACATCAAACCTCGTCTTCATTTTGAAGAATTTCAAAAGACA
69137209 A
131 A
* *
69137210 GAATGAAATTTTGAAGTGATATTCGATTACTTTGAGCAAACACGAAATTGCAACCCAACACGTTA
1 GAATGAAATTTTGAAGGGATACTCGATTACTTTGAGCAAACACGAAATTGCAACCCAACACGTTA
* ** * *
69137275 GGGCACGATTCCGCGAATTGCCAAACATTGAATCTCGTCTTCATTTTGAATAATTT
66 GAGCACGATTCCGCGAATTGCCAAACATCAAACCTCGTCTTCATTTTGAAGAATTT
69137331 TTGAATGAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 109 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (131 bp):
GAATGAAATTTTGAAGGGATACTCGATTACTTTGAGCAAACACGAAATTGCAACCCAACACGTTA
GAGCACGATTCCGCGAATTGCCAAACATCAAACCTCGTCTTCATTTTGAAGAATTTCAAAAGACA
A
Found at i:69144458 original size:48 final size:47
Alignment explanation
Indices: 69144272--69144478 Score: 144
Period size: 48 Copynumber: 4.5 Consensus size: 47
69144262 TTGTGAGAAC
* * * *
69144272 TAGTGTAAGACCATGTCTGGGACATGGCATCGTCATTGATATGTG-TGC
1 TAGTGTAAGACCATATCTGGGACATGGCATCGT-ACTGATATGAGAT-T
* * * * *
69144320 CAGTGTAAGACCATATCTGGGATATGGCATCGGCCACAG-TATGTGATT
1 TAGTGTAAGACCATATCTGGGACATGGCATC-G-TACTGATATGAGATT
* *
69144368 TCA-TGTAAGACTATATCTGGGATATGG---CGT--TGATATGAGATT
1 T-AGTGTAAGACCATATCTGGGACATGGCATCGTACTGATATGAGATT
* * *
69144410 TTGTGTAAGACCATGTCTGGGACATGGCATCGGTACTGACATGAGATT
1 TAGTGTAAGACCATATCTGGGACATGGCATC-GTACTGATATGAGATT
* * *
69144458 T-CTATAAGACCATATTTGGGA
1 TAGTGTAAGACCATATCTGGGA
69144479 TATCATTAGT
Statistics
Matches: 126, Mismatches: 21, Indels: 25
0.73 0.12 0.15
Matches are distributed among these distances:
41 1 0.01
42 30 0.24
44 1 0.01
45 2 0.02
46 2 0.02
47 16 0.13
48 69 0.55
49 5 0.04
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (47 bp):
TAGTGTAAGACCATATCTGGGACATGGCATCGTACTGATATGAGATT
Found at i:69155780 original size:20 final size:21
Alignment explanation
Indices: 69155726--69155773 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
69155716 AAAAGAAATG
* *
69155726 AGCTGAAACGAGCTAAATTCA
1 AGCTCAAAGGAGCTAAATTCA
69155747 AGCTCAAAGGAGCTAAA-TCA
1 AGCTCAAAGGAGCTAAATTCA
*
69155767 AGTTCAA
1 AGCTCAA
69155774 GTGAGCTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (21 bp):
AGCTCAAAGGAGCTAAATTCA
Found at i:69162742 original size:40 final size:40
Alignment explanation
Indices: 69162657--69162807 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
69162647 AATTGAATGA
* * *
69162657 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
69162697 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
69162738 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
69162777 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
69162808 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:69162821 original size:40 final size:40
Alignment explanation
Indices: 69162694--69162823 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
69162684 ATGCTGGAAA
* * * *
69162694 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
69162734 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
69162774 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
69162814 TTATATCCGG
1 TTATATCCGG
69162824 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:69164489 original size:39 final size:39
Alignment explanation
Indices: 69164402--69164531 Score: 197
Period size: 39 Copynumber: 3.3 Consensus size: 39
69164392 TATGAGATTG
69164402 AAAATATCCGGACATGAGGTCCGCAGGCTATATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGC--TATATGCTGGA
*
69164443 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
69164482 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
69164521 AAAATATCCGG
1 AAAATATCCGG
69164532 GTTAAAGACC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 54 0.66
41 28 0.34
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:69164545 original size:78 final size:77
Alignment explanation
Indices: 69164401--69164557 Score: 183
Period size: 78 Copynumber: 2.0 Consensus size: 77
69164391 GTATGAGATT
* * **
69164401 GAAAATATCCGGACATGAGGTCCGCAGGCTATATATGCTGGAAAAATATCCGGACATGAGGTCCG
1 GAAAATATCCGGACATGAGGTCCGCAGGC-ATACATGCTGGAAAAATATCCGGACATAAGACCCG
*
69164466 CAGGCTATATGCTA
65 CAGGCT-TACGCTA
* * **
69164480 GAAATATATCCGGACTTGAGGTCCGCAGGC-TACGTGCTGGAAAAATATCCGG-GTTAAAGACCC
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCATACATGCTGGAAAAATATCCGGACAT-AAGACCC
69164543 GCAGGCTTACGCTA
64 GCAGGCTTACGCTA
69164557 G
1 G
69164558 TGATGTATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
77 8 0.12
78 31 0.46
79 4 0.06
80 24 0.36
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (77 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCATACATGCTGGAAAAATATCCGGACATAAGACCCGC
AGGCTTACGCTA
Found at i:69178578 original size:40 final size:40
Alignment explanation
Indices: 69178534--69178721 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
69178524 GCTACTTGCT
69178534 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
69178574 CAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
69178614 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
69178654 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
69178693 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
69178722 CATCCGAATA
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 100 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:69178635 original size:80 final size:78
Alignment explanation
Indices: 69178501--69178721 Score: 293
Period size: 80 Copynumber: 2.8 Consensus size: 78
69178491 AAACCAAGTA
* * * *
69178501 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGG-TATAGC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
69178565 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * *
69178580 CCTTCGGGACTTAGCCCGGTTATAGCAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGG-TATAGC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
69178645 TAACTCGTACAAATG
64 TAACTCGCACAAATG
*
69178660 CCTTCGGG-CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTA-TAG-CACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69178722 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 58 0.46
80 67 0.53
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGTATAGCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCACAAATG
Found at i:69187541 original size:28 final size:29
Alignment explanation
Indices: 69187457--69187549 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
69187447 TCGCACACCC
*
69187457 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
69187486 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
69187515 AGTGCCATATATTT-CAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
69187543 AGTGCCA
1 AGTGCCA
69187550 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
28 21 0.33
29 42 0.67
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:69192536 original size:40 final size:40
Alignment explanation
Indices: 69192511--69193033 Score: 902
Period size: 40 Copynumber: 13.1 Consensus size: 40
69192501 GGACCCAGCT
*
69192511 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
69192551 CAGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
69192591 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
69192631 CGGATACATCACTAGCACGAATGCTCTCCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
69192671 CGGATACATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
69192711 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
69192751 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
69192791 CGGATACATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
69192831 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
69192871 CGGATATATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
69192911 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
69192951 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* * * *
69192991 CGGATATATCACTAGCACAAATGCTCTTCGGGACTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
69193031 CGG
1 CGG
69193034 CTATACAACT
Statistics
Matches: 460, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 460 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
Found at i:69195410 original size:65 final size:65
Alignment explanation
Indices: 69195329--69195460 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
69195319 TCATACATAT
69195329 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
69195394 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
69195459 CT
1 CT
69195461 TACCACATAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.34
Consensus pattern (65 bp):
CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
Found at i:69195441 original size:32 final size:32
Alignment explanation
Indices: 69195340--69195441 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
69195330 TCACATTAGC
69195340 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
* * * ** *
69195372 CATTTCGCATTAGC-CAT-TCGGCCTCACATTAGC-
1 CATTTGGCTTTACCACATATC--TATCTCA-TA-CA
69195405 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
69195437 CATTT
1 CATTT
69195442 CGCATTAGCC
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 2 0.04
31 4 0.08
32 22 0.43
33 17 0.33
34 4 0.08
35 2 0.04
ACGTcount: A:0.25, C:0.29, G:0.09, T:0.36
Consensus pattern (32 bp):
CATTTGGCTTTACCACATATCTATCTCATACA
Found at i:69195506 original size:47 final size:47
Alignment explanation
Indices: 69195444--69195659 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
69195434 ACACATTTCG
* * * *
69195444 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
69195491 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
69195538 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
69195585 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
69195632 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
69195660 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:69195550 original size:94 final size:94
Alignment explanation
Indices: 69195444--69195685 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
69195434 ACACATTTCG
*
69195444 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
69195509 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
69195538 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
69195603 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
69195632 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
69195686 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:69199175 original size:27 final size:27
Alignment explanation
Indices: 69199112--69199179 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 27
69199102 AGAATACTTT
**
69199112 AGTTTACTAAAATTACTGAAGTACCCCC
1 AGTTTA-TAAAATTACCAAAGTACCCCC
*
69199140 AG-TTGTAAAATTACCAAAGTACCCCC
1 AGTTTATAAAATTACCAAAGTACCCCC
*
69199166 GGTTTATAAAATTA
1 AGTTTATAAAATTA
69199180 TCGAAATACT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 20 0.59
27 12 0.35
28 2 0.06
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
AGTTTATAAAATTACCAAAGTACCCCC
Found at i:69199231 original size:27 final size:27
Alignment explanation
Indices: 69199119--69199296 Score: 159
Period size: 27 Copynumber: 6.7 Consensus size: 27
69199109 TTTAGTTTAC
* * *
69199119 TAAAATTACTGAAGTACCC-CCAGTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * * *
69199145 TAAAATTAC-CAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
** *
69199172 TAAAATTA-TCGAAATACTGTC-AATTG
1 TAAAATTACT-GAAATACCCTCGATTTG
69199198 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
** *
69199225 TAAAATTACCAAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
* *
69199252 AAAAATTACTAAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
69199279 TAAAATTACTGAAATACC
1 TAAAATTACTGAAATACC
69199297 TTTGTAGGGT
Statistics
Matches: 120, Mismatches: 24, Indels: 15
0.75 0.15 0.09
Matches are distributed among these distances:
25 2 0.02
26 34 0.28
27 80 0.67
28 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:69199312 original size:27 final size:27
Alignment explanation
Indices: 69199282--69199583 Score: 383
Period size: 27 Copynumber: 11.2 Consensus size: 27
69199272 CGATTTGTAA
**
69199282 AATTACTGAAATACCTTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
69199309 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
69199336 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
69199363 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69199390 ATTTA-TCG-AATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
69199416 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69199443 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69199470 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69199497 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69199524 AATTACTGAAATACCCCTGTGGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
69199551 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
69199578 AATTAC
1 AATTAC
69199584 CATTTTGCCC
Statistics
Matches: 243, Mismatches: 29, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
26 21 0.09
27 222 0.91
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:69199402 original size:134 final size:134
Alignment explanation
Indices: 69199278--69199556 Score: 380
Period size: 134 Copynumber: 2.1 Consensus size: 134
69199268 CCCTCGATTT
* ** * *
69199278 GTAAAATTACTGAAATACCTTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
1 GTAAAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
*
69199343 AAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGATTTATCGAATACCCCTG
66 AAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTATAAGGTAGATTTATCGAATACCCCTG
69199408 TAGG
131 TAGG
* * *
69199412 GTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAAAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
* * * * * *
69199477 GAAATACCCCTGTAAGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTA-CTGAAATACCCC
66 AAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTATAAGGTAGATTTATC-G-AATACCCC
*
69199541 TGTGGG
129 TGTAGG
*
69199547 GTAGAATTAC
1 GTAAAATTAC
69199557 CGAGATACCC
Statistics
Matches: 127, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
133 1 0.01
134 103 0.81
135 23 0.18
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (134 bp):
GTAAAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACC
AAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTATAAGGTAGATTTATCGAATACCCCTG
TAGG
Found at i:69199846 original size:27 final size:26
Alignment explanation
Indices: 69199808--69199890 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
69199798 TGGAGGAAAC
*
69199808 GTTCTGGTGGCTATGCCACAAGTATCT
1 GTTCTGATGGCTATGCCACAA-TATCT
*
69199835 GTTCTGATGGCTCTGCCACAATATCT
1 GTTCTGATGGCTATGCCACAATATCT
* * * * *
69199861 GTATCTGGTGACTTTGTCACAATATTT
1 GT-TCTGATGGCTATGCCACAATATCT
69199888 GTT
1 GTT
69199891 GACTGATCAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGATGGCTATGCCACAATATCT
Found at i:69200119 original size:97 final size:97
Alignment explanation
Indices: 69199941--69200130 Score: 292
Period size: 97 Copynumber: 2.0 Consensus size: 97
69199931 TGTGTGCCGT
* *
69199941 TATTGTAGGCTTGGTGCCGATTATAGACCCGTTATCAATGGCTGAGTGCCAATCATGTTACCGAA
1 TATTGTAGGCTTCGTGCCGATCATAGACCCGTTATCAATGGCTGAGTGCCAATCATGTTACCGAA
69200006 GGCTGTGCGCCATTATTGTGGGCTTCGTATGA
66 GGCTGTGCGCCATTATTGTGGGCTTCGTATGA
* *
69200038 TATTGTAGGCTTCGTGCCGATCATAGACCCGTTATCAATGGCT-AGGTGTCGATCATGTTACCGA
1 TATTGTAGGCTTCGTGCCGATCATAGACCCGTTATCAATGGCTGA-GTGCCAATCATGTTACCGA
* * * *
69200102 AGGTTGTGTGTCGTTATTGTGGGCTTCGT
65 AGGCTGTGCGCCATTATTGTGGGCTTCGT
69200131 GCCGATTATA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 1 0.01
97 83 0.99
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (97 bp):
TATTGTAGGCTTCGTGCCGATCATAGACCCGTTATCAATGGCTGAGTGCCAATCATGTTACCGAA
GGCTGTGCGCCATTATTGTGGGCTTCGTATGA
Found at i:69200225 original size:27 final size:26
Alignment explanation
Indices: 69200189--69200260 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
69200179 AGTGGCTTTC
* *
69200189 CCACATTATCTGATTCTGGTGGCTCTG
1 CCACAATATCTG-TTCTGGTGACTCTG
*
69200216 CCCCAATATCTGTATCTGGTGACTCTG
1 CCACAATATCTGT-TCTGGTGACTCTG
* *
69200243 TCACAATATCAGTTCTGG
1 CCACAATATCTGTTCTGG
69200261 CAGCCATGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 6 0.16
27 32 0.84
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.35
Consensus pattern (26 bp):
CCACAATATCTGTTCTGGTGACTCTG
Found at i:69206076 original size:20 final size:20
Alignment explanation
Indices: 69206051--69206096 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
69206041 GTTGAGCCTT
69206051 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
69206071 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
69206090 GCCCATA
1 GCCCATA
69206097 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:69206105 original size:19 final size:20
Alignment explanation
Indices: 69206063--69206106 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
69206053 CCATATTAAC
** *
69206063 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
69206083 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
69206102 ACAGT
1 ACAGT
69206107 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:69208776 original size:40 final size:40
Alignment explanation
Indices: 69208706--69208819 Score: 108
Period size: 40 Copynumber: 2.8 Consensus size: 40
69208696 TGTGTTTCAA
* * **
69208706 AATAGCTTCGGCTATATAT-A-ACACTTAGTGTGTGAATTGG
1 AATAGCTTCGGCT-TATATGAGGCACTAAGTGTGTG-ATACG
69208746 AATAGCTTCGG-TTATATGAGGCACTAAGTGTGTGATACG
1 AATAGCTTCGGCTTATATGAGGCACTAAGTGTGTGATACG
* *
69208785 ATATAGCTTCGGTTTAATGTGATGGCACTAAGTGT
1 A-ATAGCTTCGGCTT-ATATGA-GGCACTAAGTGT
69208820 ACGAGATCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
38 5 0.08
39 6 0.10
40 33 0.52
41 2 0.03
42 5 0.08
43 12 0.19
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (40 bp):
AATAGCTTCGGCTTATATGAGGCACTAAGTGTGTGATACG
Found at i:69212607 original size:44 final size:44
Alignment explanation
Indices: 69212544--69212644 Score: 175
Period size: 44 Copynumber: 2.3 Consensus size: 44
69212534 TTAAGAGCTT
*
69212544 GCACACTTAGTGCATTAATGATTAGTCAAAGCTGTTACGATCTC
1 GCACACTTAGTGCATTAATGATTAGCCAAAGCTGTTACGATCTC
* *
69212588 GCACACTTAGTGTATTAATGATTAGCCAAAGCTGTTACGATCTT
1 GCACACTTAGTGCATTAATGATTAGCCAAAGCTGTTACGATCTC
69212632 GCACACTTAGTGC
1 GCACACTTAGTGC
69212645 CATCTCAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
GCACACTTAGTGCATTAATGATTAGCCAAAGCTGTTACGATCTC
Found at i:69220131 original size:27 final size:27
Alignment explanation
Indices: 69220101--69220231 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
69220091 ATTACCAAAG
*
69220101 TACCATCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
69220128 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
69220155 TACCCTTGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-GTTT
* * *
69220182 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
69220209 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
69220232 ACAATACCCT
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 90 0.99
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:69220239 original size:27 final size:27
Alignment explanation
Indices: 69220182--69220294 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 27
69220172 ATTATCGTTT
* * ****
69220182 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* *
69220209 TACCCTCGATTTACAAAATTACTACAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
69220236 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
** *
69220263 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
69220290 TACCC
1 TACCC
69220295 CTGGCTTGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.39, C:0.27, G:0.05, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:69220267 original size:54 final size:54
Alignment explanation
Indices: 69220209--69220321 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
69220199 ATTACCGTTT
** * * * *
69220209 TACCCTCGATTTACAAAATTACTACAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATCAACAAAATTACCAAAATACCCCTGGCTTACAAAATTACCAAAA
* ** *
69220263 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGCTTGTAAGATTACCAAAA
1 TACCCTCGATCAACAAAATTACCAAAATACCCCTGGCTTACAAAATTACCAAAA
69220317 TACCC
1 TACCC
69220322 CTGATTTGTG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (54 bp):
TACCCTCGATCAACAAAATTACCAAAATACCCCTGGCTTACAAAATTACCAAAA
Found at i:69220267 original size:81 final size:81
Alignment explanation
Indices: 69220088--69220269 Score: 193
Period size: 81 Copynumber: 2.2 Consensus size: 81
69220078 CTCGACTTGT
* * * * * * * * *
69220088 AAAATTACCAAAGTACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTATAGAATTACTAT
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAC
** *
69220153 TTTACCCTTGATTTAT
66 AATACCCTTGATTTAC
* * ****
69220169 AGAATTATCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAC
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAC
*
69220234 AATACCCTTGGTTTAC
66 AATACCCTTGATTTAC
69220250 AAAATTACCAAAATACCCTC
1 AAAATTACCAAAATACCCTC
69220270 GATCAATAAA
Statistics
Matches: 77, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAC
AATACCCTTGATTTAC
Found at i:69220330 original size:27 final size:27
Alignment explanation
Indices: 69220223--69220431 Score: 104
Period size: 27 Copynumber: 7.8 Consensus size: 27
69220213 CTCGATTTAC
* * * * **
69220223 AAAATTACTACAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
***
69220250 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GATTTGT
**
69220277 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
69220304 AAGATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
69220331 GAAATTATCTAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*** **
69220358 AAAA-TATTGAAATACCCCTG-TAGGGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* * **
69220384 AGAATTATCAAAATACCCCTG-TAGAGT
1 AAAATTACCAAAATACCCCTGAT-TTGT
* *
69220411 AGAATTACCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
69220432 TAGGGTAGAA
Statistics
Matches: 144, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.01
26 20 0.14
27 119 0.83
28 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:69220590 original size:27 final size:27
Alignment explanation
Indices: 69220366--69220579 Score: 311
Period size: 27 Copynumber: 7.9 Consensus size: 27
69220356 GTAAAATATT
*
69220366 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
69220393 AAAATACCCCTGTAGAGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
69220420 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
69220447 GAAACAACCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
69220474 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
69220501 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
69220528 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
69220555 GAAATACCCCTGTAGGGTAGAATTA
1 GAAATACCCCTGTAGGGTAGAATTA
69220580 TCGAGCTACC
Statistics
Matches: 162, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 162 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:69220600 original size:54 final size:54
Alignment explanation
Indices: 69220366--69220605 Score: 284
Period size: 54 Copynumber: 4.4 Consensus size: 54
69220356 GTAAAATATT
* * * *
69220366 GAAATACCCCTGTAGGGTAGAATTA-TCAAAATACCCCTGTAGAGTAGAATTACC
1 GAAATACCCCTGTAGGGTAAAAATACT-GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
69220420 GAAATACCCCTGTAGGGTAGAATTACTGAAACAACCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAAAAATACTGAAATACCCCTGTAGGGTAGAATTACC
* * * *
69220474 AAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAAAAATACTGAAATACCCCTGTAGGGTAGAATTACC
* * *
69220528 GAAATACCCTTGTAGGGTAAAAATACCGAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAAAAATACTGAAATACCCCTGTAGGGTAGAATTACC
** * *
69220582 GAGCTACCCTTGTGGGGTAAAAAT
1 GAAATACCCCTGTAGGGTAAAAAT
69220606 TACCATTTTG
Statistics
Matches: 167, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
54 166 0.99
55 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAAAAATACTGAAATACCCCTGTAGGGTAGAATTACC
Found at i:69220850 original size:25 final size:25
Alignment explanation
Indices: 69220812--69220877 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
69220802 AGGAAGCGCT
* *
69220812 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
69220837 AAAAGGGCTTTGCCGCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
69220862 AAAAGGGCTTTACCCC
1 AAAAGGGCTTTGCCCC
69220878 GTTATTAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69221152 original size:31 final size:30
Alignment explanation
Indices: 69221100--69221182 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
69221090 CGCTTACAGT
69221100 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
69221130 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
69221161 AAAGGCTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
69221183 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 16 0.31
31 35 0.69
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTTATGA
Found at i:69227767 original size:93 final size:93
Alignment explanation
Indices: 69227655--69227826 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69227645 GCCCATAAGT
* *
69227655 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69227720 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69227748 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69227813 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69227827 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69227822 original size:46 final size:46
Alignment explanation
Indices: 69227647--69227822 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69227637 TGTAACCCGC
* * *
69227647 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69227693 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69227743 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
69227786 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69227823 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69230191 original size:30 final size:30
Alignment explanation
Indices: 69230147--69230235 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
69230137 CAAAGATAAC
69230147 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
69230176 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
69230206 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
69230236 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:69230195 original size:15 final size:15
Alignment explanation
Indices: 69230147--69230226 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
69230137 CAAAGATAAC
*
69230147 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69230161 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
69230176 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
69230191 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
69230206 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69230221 AAGAAA
1 AAGAAA
69230227 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69230235 original size:15 final size:15
Alignment explanation
Indices: 69230158--69230235 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
69230148 AGAAAACCGA
69230158 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
69230173 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
69230187 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
69230202 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69230218 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69230233 ATA
1 ATA
69230236 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69233260 original size:93 final size:93
Alignment explanation
Indices: 69233148--69233319 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69233138 GCCCATAAGT
* *
69233148 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69233213 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69233241 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69233306 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69233320 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69233315 original size:46 final size:46
Alignment explanation
Indices: 69233140--69233315 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69233130 TGTAACCCGC
* * *
69233140 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69233186 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69233236 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
69233279 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69233316 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69234768 original size:47 final size:47
Alignment explanation
Indices: 69234716--69234857 Score: 223
Period size: 47 Copynumber: 3.0 Consensus size: 47
69234706 AAAATTTTCT
* *
69234716 TTAACTAAGTAACTTATCCACAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAAATTTAACAAGC
* *
69234763 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAAATTTAACAAGC
* *
69234810 TTAACTAAGTAACTGATCTAGAAATATTAAGAGC-AATTTAACAAGC
1 TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAAATTTAACAAGC
69234856 TT
1 TT
69234858 TAAATTCAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 14 0.16
47 73 0.84
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCAGAAATATTAAGAGCAAATTTAACAAGC
Found at i:69239108 original size:40 final size:40
Alignment explanation
Indices: 69239015--69239309 Score: 426
Period size: 40 Copynumber: 7.5 Consensus size: 40
69239005 AAGCCAAGTA
* * *
69239015 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
69239053 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69239093 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69239133 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69239173 CCTTCGGGACTTAGCCCGGATATAATAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69239212 CCTTCGGGACTTAGCCC-GATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69239251 CCTTCGGGACTTAGCCCGGA-ACTA-TCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
69239291 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69239310 TTATCATCCA
Statistics
Matches: 241, Mismatches: 8, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
38 29 0.12
39 64 0.27
40 144 0.60
41 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69239268 original size:118 final size:119
Alignment explanation
Indices: 69239015--69239309 Score: 433
Period size: 118 Copynumber: 2.5 Consensus size: 119
69239005 AAGCCAAGTA
* * * * *
69239015 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
69239078 TAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65 TAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
69239133 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
69239198 TAACTCGCA-CAATGCCTTCGGGACTTAGCCC-GATATAATAACTCGCACAAATG
65 TAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
69239251 CCTTCGGGACTTAGCCCGGA-ACTA-TCACTAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
69239310 TTATCATCCA
Statistics
Matches: 164, Mismatches: 7, Indels: 12
0.90 0.04 0.07
Matches are distributed among these distances:
117 5 0.03
118 80 0.49
119 43 0.26
120 36 0.22
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
AACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:69247299 original size:40 final size:40
Alignment explanation
Indices: 69247220--69247472 Score: 243
Period size: 40 Copynumber: 6.1 Consensus size: 40
69247210 TCGGATTTAA
* *
69247220 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
69247259 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
69247299 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69247339 CCGGATATAGTAACTCGCA-AAATGCCTTC-GCAC-AATGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA-GC
69247377 CTTCGGGACT-TAGCCCGGATATAACTCGCACAAATGCCTTCGGGACTTAGC
1 C--C-GGA-TATA-----G---TAACTCGCACAAATGCCTTCGGGACTTAGC
*
69247428 CCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
69247469 CCGG
1 CCGG
69247473 TTATCATCCA
Statistics
Matches: 184, Mismatches: 8, Indels: 42
0.79 0.03 0.18
Matches are distributed among these distances:
37 1 0.01
38 7 0.04
39 27 0.15
40 81 0.44
41 29 0.16
42 5 0.03
43 1 0.01
46 1 0.01
48 5 0.03
49 10 0.05
50 10 0.05
51 6 0.03
52 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69247392 original size:52 final size:51
Alignment explanation
Indices: 69247313--69247418 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 51
69247303 ATATAGTAAC
69247313 TCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-AAATGCCT
1 TCGCACAAATGCCTTCGGGACTTAGCCCGG--ATA-TAACTCGCACAAATGCCT
69247366 TCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAACTCGCACAAATGCCT
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATATAACTCGCACAAATGCCT
69247416 TCG
1 TCG
69247419 GGACTTAGCC
Statistics
Matches: 52, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
49 9 0.17
50 14 0.27
52 23 0.44
53 6 0.12
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (51 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATATAACTCGCACAAATGCCT
Found at i:69247416 original size:37 final size:40
Alignment explanation
Indices: 69247366--69247472 Score: 152
Period size: 41 Copynumber: 2.8 Consensus size: 40
69247356 CAAAATGCCT
69247366 TCGCAC-AATGCCTTCGGGACTTAGCCCGG-A-TA-TAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAAC
*
69247402 TCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAAC
69247442 TAGCGCA-AAATGCCTTCGGGACTTAGCCCGG
1 T--CGCACAAATGCCTTCGGGACTTAGCCCGG
69247473 TTATCATCCA
Statistics
Matches: 64, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
36 6 0.09
37 23 0.36
38 1 0.02
39 2 0.03
40 4 0.06
41 24 0.38
42 4 0.06
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAAC
Found at i:69253048 original size:40 final size:40
Alignment explanation
Indices: 69252955--69253210 Score: 364
Period size: 39 Copynumber: 6.5 Consensus size: 40
69252945 AAGCCAAGTA
* * *
69252955 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
69252993 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69253033 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69253073 CCTTCGGGACTTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69253112 CCTTCGGGACTTAGCCCGGATA-AATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69253151 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
69253192 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69253211 TTATCATCCA
Statistics
Matches: 201, Mismatches: 9, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
38 19 0.09
39 77 0.38
40 77 0.38
41 24 0.12
42 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69253194 original size:119 final size:119
Alignment explanation
Indices: 69252955--69253210 Score: 362
Period size: 119 Copynumber: 2.2 Consensus size: 119
69252945 AAGCCAAGTA
* * * *
69252955 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAATGCCTTCGGGACATAGCCCGGATATAAT
*
69253019 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69253073 CCTTCGGGACTTAGCCCGGATATAG-TAACT-GCACAAATGCCTTCGGGACTTAGCCCGGATA-A
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCAC-AATGCCTTCGGGACATAGCCCGGATATA
*
69253135 ATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
64 ATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
69253192 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69253211 TTATCATCCA
Statistics
Matches: 125, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
117 1 0.01
118 58 0.46
119 62 0.50
120 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAATGCCTTCGGGACATAGCCCGGATATAAT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69258840 original size:40 final size:40
Alignment explanation
Indices: 69258702--69258957 Score: 312
Period size: 39 Copynumber: 6.5 Consensus size: 40
69258692 AAGCCAAGTA
* * *
69258702 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
69258740 CCTTCGAGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69258780 CCTTC-GGACTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69258819 CCTTCGGGACTTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69258858 CCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69258898 CCTTCGGGACTTAGCCTCGGA-ACTAG-CACTAGCGCA-AAATT
1 CCTTCGGGACTTAGCC-CGGATA-TAGTAACT--CGCACAAATG
69258939 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69258958 TTATCATCCA
Statistics
Matches: 193, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
38 11 0.06
39 90 0.47
40 63 0.33
41 26 0.13
42 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69258842 original size:79 final size:79
Alignment explanation
Indices: 69258702--69258957 Score: 308
Period size: 79 Copynumber: 3.2 Consensus size: 79
69258692 AAGCCAAGTA
* * * * *
69258702 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATGCCTTCGAGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
69258764 GTAACTCGCACCAATG
65 GTAACT-GCACAAATG
*
69258780 CCTTC-GGACTTAGTCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
69258844 TAACTGCACAAATG
66 TAACTGCACAAATG
* *
69258858 CCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCTCGGA-ACT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC-CGGATA-T
* * *
69258922 AG-CACTAGCGCAAAATT
64 AGTAACT-GCAC-AAATG
69258939 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69258958 TTATCATCCA
Statistics
Matches: 158, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
77 7 0.04
78 35 0.22
79 83 0.53
80 10 0.06
81 23 0.15
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTGCACAAATG
Found at i:69264446 original size:44 final size:44
Alignment explanation
Indices: 69264383--69264489 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 44
69264373 ACCGAAATTC
* * *
69264383 AGCCTGCTAGGTTTAAAAGCCCG-ATA-TCATTTCACCGACATTAT
1 AGCCTGCTAGG-CTCAAAGCCCGAATAGT-ATCTCACCGACATTAT
* *
69264427 AGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACTGGCATTAT
1 AGCCTGCTAGGCTC-AAAGCCCGAATAGTATCTCACCGACATTAT
*
69264472 ATCCTGCTAGGCTCAAAG
1 AGCCTGCTAGGCTCAAAG
69264490 GCCTGAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 23 0.43
45 29 0.54
46 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (44 bp):
AGCCTGCTAGGCTCAAAGCCCGAATAGTATCTCACCGACATTAT
Found at i:69267985 original size:47 final size:47
Alignment explanation
Indices: 69267916--69268047 Score: 221
Period size: 47 Copynumber: 2.8 Consensus size: 47
69267906 GGATGTTACA
69267916 AACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGCTTAACTAAGT
1 AACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGCTTAACTAAGT
* *
69267963 AACTTGTCCGGAAATATTAAGAGCAATTTTAACAAGCATAACTAAGT
1 AACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGCTTAACTAAGT
* *
69268010 AACTTATCCGGAAATATTAAGAGC-AATTGAACAAGCTT
1 AACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGCTT
69268048 TAAATTCAAC
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 11 0.14
47 68 0.86
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (47 bp):
AACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGCTTAACTAAGT
Found at i:69272969 original size:29 final size:29
Alignment explanation
Indices: 69272932--69273010 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 29
69272922 CTAAAGTGCT
*
69272932 AATAT-CATGGCTCGAAGCCAACACATGC
1 AATATGCATGGCCCGAAGCCAACACATGC
* * *
69272960 GATATGCATGGCCCGAAGCCAACATATTC
1 AATATGCATGGCCCGAAGCCAACACATGC
*
69272989 AATATGCATGGCCCCAAGCCAA
1 AATATGCATGGCCCGAAGCCAA
69273011 ATCTATTCCT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 4 0.09
29 40 0.91
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (29 bp):
AATATGCATGGCCCGAAGCCAACACATGC
Found at i:69288607 original size:16 final size:16
Alignment explanation
Indices: 69288583--69288617 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
69288573 GTAAAATCTG
*
69288583 AAATACCGAAATGTCA
1 AAATACCGAAATGCCA
*
69288599 AAATGCCGAAATGCCA
1 AAATACCGAAATGCCA
69288615 AAA
1 AAA
69288618 ATTCGAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.20, G:0.14, T:0.14
Consensus pattern (16 bp):
AAATACCGAAATGCCA
Found at i:69288894 original size:29 final size:29
Alignment explanation
Indices: 69288836--69288950 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
69288826 GTGAGAATGA
* * *
69288836 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
69288864 ATATAAATGTGATTTGGGCCTAATGGACC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
69288893 ATATACAGGTGATTTGGTCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
69288922 ATATGATTATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
69288950 A
1 A
69288951 GATACAGTTA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 26 0.37
29 45 0.63
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:69292174 original size:79 final size:81
Alignment explanation
Indices: 69292073--69292257 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
69292063 ACGACTCGCT
** *
69292073 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGCGA-CTCGCACGAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TA-CGATCTCGCACGAATGCCTTC-GGATCCTAACC
* *
69292135 CGGGTTTAGTAACTT-GCA
63 CGGATATAGTAACTTAGCA
** **
69292153 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTACGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
*
69292217 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
69292233 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69292258 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 4 0.04
79 52 0.58
80 34 0.38
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTACGATCTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:69292198 original size:39 final size:40
Alignment explanation
Indices: 69292066--69292257 Score: 142
Period size: 40 Copynumber: 4.8 Consensus size: 40
69292056 GGATATAACG
* * * **
69292066 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGCG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
69292106 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
69292146 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * ** * *
69292185 TCTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
* * *
69292225 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
69292258 CATCATTCGA
Statistics
Matches: 123, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.24
40 79 0.64
41 12 0.10
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:69298455 original size:16 final size:16
Alignment explanation
Indices: 69298434--69298464 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69298424 ACTTAAAATT
69298434 TTGAAATACCGAAAAA
1 TTGAAATACCGAAAAA
*
69298450 TTGAAATGCCGAAAA
1 TTGAAATACCGAAAA
69298465 GCTGAAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (16 bp):
TTGAAATACCGAAAAA
Found at i:69298771 original size:29 final size:29
Alignment explanation
Indices: 69298695--69298771 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
69298685 TGGATGTGAC
* * *
69298695 TGGGCCTAACGAGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* * * *
69298724 TGGGCCTATTGGACTATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
69298753 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
69298772 GAATATGATT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:69298780 original size:29 final size:28
Alignment explanation
Indices: 69298695--69298796 Score: 82
Period size: 29 Copynumber: 3.6 Consensus size: 28
69298685 TGGATGTGAC
* * *
69298695 TGGGCCTAACGAGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATAT-AATATGATT
* * *
69298724 TGGGCCTATTGGACTATAT-ATAGGTGATT
1 TGGGCCTAATGGGCCATATAATA--TGATT
69298753 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATAT-AATATGATT
**
69298781 TGGGTTTAATGGGCCA
1 TGGGCCTAATGGGCCA
69298797 GATACAGGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
27 2 0.03
28 15 0.26
29 38 0.66
31 3 0.05
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAATATGATT
Found at i:69301763 original size:42 final size:43
Alignment explanation
Indices: 69301702--69301865 Score: 215
Period size: 42 Copynumber: 3.7 Consensus size: 43
69301692 CTTCGTTTTC
** *
69301702 TCGATGCCATAGTTCAGCTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
*
69301745 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATAT-A
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
*
69301786 TCGATGCCATAGCCCAGCTATGGTCTTACACATAATCACATATCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACAT-AT-TC--A-CATA-A
69301835 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
69301866 GAATTACATA
Statistics
Matches: 107, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
41 2 0.02
42 66 0.62
43 3 0.03
44 1 0.01
46 1 0.01
47 2 0.02
49 32 0.30
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (43 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
Found at i:69301908 original size:46 final size:47
Alignment explanation
Indices: 69301789--69301961 Score: 150
Period size: 47 Copynumber: 3.7 Consensus size: 47
69301779 TCATATATCG
* * * * * * *
69301789 ATGCCATAGCCCAGCTATGGTCTTACACATAATCACATATCATATATCG
1 ATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATC--ACACCA
* * ** * *
69301838 ATGCCATAGCCCAGCTATGGTCTTACAC-GAATTACATATCTCACTA
1 ATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACACCA
* * * * *
69301884 ATTCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACCG
1 ATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACACCA
*
69301931 ATGCCATATCCCAGATATGGTCTTATACAGA
1 ATGCCATATCCCAGATATGGTCTTACACAGA
69301962 TATCACTTGT
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
46 25 0.24
47 40 0.39
48 10 0.10
49 28 0.27
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (47 bp):
ATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACACCA
Done.