Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 232 of 328
Found at i:69666543 original size:25 final size:25
Alignment explanation
Indices: 69666505--69666574 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
69666495 AGGAAGTGCT
* *
69666505 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
69666530 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
69666555 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69666575 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69666587 original size:24 final size:24
Alignment explanation
Indices: 69666504--69666599 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
69666494 GAGGAAGTGC
*
69666504 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
69666529 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
69666553 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
69666577 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
69666600 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:69666598 original size:50 final size:50
Alignment explanation
Indices: 69666505--69666599 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
69666495 AGGAAGTGCT
**
69666505 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
69666555 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
69666600 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:69666857 original size:31 final size:30
Alignment explanation
Indices: 69666795--69666868 Score: 112
Period size: 30 Copynumber: 2.4 Consensus size: 30
69666785 CGTTTACAGT
* *
69666795 AAAGGCTTCAGCCCAATGATATGATTATGA
1 AAAGGCTTCGGCCCAACGATATGATTATGA
*
69666825 AAAGGCTTCGGCCCAGCGATATGATTTATGA
1 AAAGGCTTCGGCCCAACGATATGA-TTATGA
69666856 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
69666869 TAGTAACCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 21 0.52
31 19 0.47
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAACGATATGATTATGA
Found at i:69668975 original size:79 final size:80
Alignment explanation
Indices: 69668832--69669039 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
69668822 ACCTTCGGAG
* * ** * * * *
69668832 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
69668896 CCAAAGCCTACGGGA
66 CCAAAGCCTACGGGA
* * * *
69668911 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
69668973 CACGAATGCCTTCGGGT
64 CACCAAAGCCTACGGGA
* * * *
69668990 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
69669040 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAAGCCTACGGGA
Found at i:69668984 original size:40 final size:40
Alignment explanation
Indices: 69668932--69669039 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
69668922 TATCACGATT
** *
69668932 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
69668972 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
69669012 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
69669040 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:69672514 original size:27 final size:27
Alignment explanation
Indices: 69672495--69672632 Score: 204
Period size: 27 Copynumber: 5.1 Consensus size: 27
69672485 ACCCAAATAT
69672495 CCTCAATTTATAGAATTACCATTTTAC
1 CCTCAATTTATAGAATTACCATTTTAC
* *
69672522 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCAATTTATAGAATTACCATTTTAC
69672549 CCTCAATTTATAGAATTACCATTTTAC
1 CCTCAATTTATAGAATTACCATTTTAC
** * *
69672576 CCTTGATTTATAGAATTATCGTTTTAC
1 CCTCAATTTATAGAATTACCATTTTAC
* *
69672603 CCTCGATTTACAGAATTACCATTTTAC
1 CCTCAATTTATAGAATTACCATTTTAC
69672630 CCT
1 CCT
69672633 TATTTACAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (27 bp):
CCTCAATTTATAGAATTACCATTTTAC
Found at i:69672523 original size:54 final size:54
Alignment explanation
Indices: 69672465--69672658 Score: 160
Period size: 54 Copynumber: 3.6 Consensus size: 54
69672455 ATTACCAACG
* *
69672465 TACCCCTGGTTTATAAAACTACCCA-AATATCCTCAATTTATAGAATTACCATTT
1 TACCCCTGATTTATAAAACTA-CCATAATACCCTCAATTTATAGAATTACCATTT
* * * **
69672519 TA-CCCTCGATTTATAGAATTACTATTTTACCCTCAATTTATAGAATTACCATTT
1 TACCCCT-GATTTATAAAACTACCATAATACCCTCAATTTATAGAATTACCATTT
* * * * * ** * *
69672573 TACCCTTGATTTATAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCCTGATTTATAAAACTACCATAATACCCTCAATTTATAGAATTACCATTT
* * * * *
69672627 TA-CCCTTATTTACAAAATTACTAAAATACCCT
1 TACCCCTGATTTATAAAACTACCATAATACCCT
69672659 TGGTTTACAA
Statistics
Matches: 114, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
53 26 0.23
54 85 0.75
55 3 0.03
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (54 bp):
TACCCCTGATTTATAAAACTACCATAATACCCTCAATTTATAGAATTACCATTT
Found at i:69672673 original size:27 final size:27
Alignment explanation
Indices: 69672600--69672741 Score: 117
Period size: 27 Copynumber: 5.3 Consensus size: 27
69672590 ATTATCGTTT
* * * ***
69672600 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTTGGTTTACAAAATTACCAAAA
* *
69672627 TACCCTT-ATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
69672653 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * * *
69672680 TA-CCTTCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACCAAAA
* ** *
69672707 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
69672734 TACCCTTG
1 TACCCTTG
69672742 ATTTGTAAAT
Statistics
Matches: 93, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
26 28 0.30
27 60 0.65
28 5 0.05
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:69672746 original size:27 final size:27
Alignment explanation
Indices: 69672627--69672763 Score: 129
Period size: 27 Copynumber: 5.2 Consensus size: 27
69672617 ATTACCATTT
** *
69672627 TACCCTT-ATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
69672653 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
**
69672680 TA-CCTTCGATCAGTAAAATTACCAAAA
1 TACCCTT-GATTTGTAAAATTACCAAAA
* * *
69672707 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
69672734 TACCCTTGATTTGT-AAA-TACCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
69672759 TACCC
1 TACCC
69672764 CTGTAGGGTA
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
25 11 0.12
26 14 0.15
27 64 0.70
28 3 0.03
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:69672750 original size:54 final size:54
Alignment explanation
Indices: 69672609--69672766 Score: 153
Period size: 54 Copynumber: 3.0 Consensus size: 54
69672599 TTACCCTCGA
* *** ** * *
69672609 TTTACAGAATTACCATTTTACCCTT-ATTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGG
**
69672662 TTTACAAAATTACCAAAATA-CCTTCGATCAGTAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTT-GATTTGTAAAATTACCAAAATACCCCTGG
** * *
69672716 TTTGTAAAATTACTAAAATACCCTTGATTTGT-AAA-TACCGAAATACCCCTG
1 TTTACAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTG
69672767 TAGGGTAGAA
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
52 19 0.22
53 19 0.22
54 44 0.51
55 4 0.05
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.32
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGG
Found at i:69672867 original size:80 final size:81
Alignment explanation
Indices: 69672748--69672969 Score: 338
Period size: 80 Copynumber: 2.8 Consensus size: 81
69672738 CTTGATTTGT
*
69672748 AAATACCGAAATACCCCTGTAGGGTAGAATGACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
69672813 TACCC-TGTAGGGTAG
66 TACCCTTGTAGGGTAG
* * * * *
69672828 AATTACTGAAATAACCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAA
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
69672893 TACCCTTGTAGGGTAG
66 TACCCTTGTAGGGTAG
* * * * *
69672909 AAATACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC
69672970 ATTTTGCCCC
Statistics
Matches: 125, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 64 0.51
81 61 0.49
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (81 bp):
AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCTTGTAGGGTAG
Found at i:69672969 original size:27 final size:27
Alignment explanation
Indices: 69672751--69672969 Score: 314
Period size: 27 Copynumber: 8.1 Consensus size: 27
69672741 GATTTGTAAA
69672751 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
69672778 GACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
69672805 TACCGAAATA-CCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
69672831 TACTGAAATAACCCTATAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
69672858 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
69672885 TACTGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
69672912 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * * *
69672939 TACCGAGATACCCTTGTGGGGTAAAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
69672966 TACC
1 TACC
69672970 ATTTTGCCCC
Statistics
Matches: 174, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 25 0.14
27 149 0.86
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAT
Found at i:69673247 original size:24 final size:25
Alignment explanation
Indices: 69673197--69673247 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
69673187 CAGTTTACCG
*
69673197 AAAGGACTTTGCCCCAATTTATCAA
1 AAAGGACTTTGCCCCAAGTTATCAA
* *
69673222 AAAGGGCTTTGCCCC-AGTTATTAA
1 AAAGGACTTTGCCCCAAGTTATCAA
69673246 AA
1 AA
69673248 GAGGCTAGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAGGACTTTGCCCCAAGTTATCAA
Found at i:69673485 original size:31 final size:31
Alignment explanation
Indices: 69673408--69673491 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
69673398 CGTTTATAGT
* **
69673408 AAAGGCTTCGTCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGCGATATGATTTATGA
69673439 AAAGGCTTCGGCCCAGCGATATGATTTATGA
1 AAAGGCTTCGGCCCAGCGATATGATTTATGA
69673470 AAAGGCTTCGGCCCAGC-ATATG
1 AAAGGCTTCGGCCCAGCGATATG
69673492 TCAAGACTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGCGATATGATTTATGA
Found at i:69679596 original size:30 final size:29
Alignment explanation
Indices: 69679548--69679608 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
69679538 TAAGTAGCCG
**
69679548 AAGCTAGTTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTAAACCGCACACTTAGTGCCA
69679577 AAGCTAGTTTAAACCGCACACTTAGTGCCA
1 AAGCTAG-TTAAACCGCACACTTAGTGCCA
69679607 AA
1 AA
69679609 ACTTCCGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAACCGCACACTTAGTGCCA
Found at i:69684725 original size:13 final size:13
Alignment explanation
Indices: 69684707--69684732 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69684697 AATAACATGG
69684707 ATTTAGAGCTTTA
1 ATTTAGAGCTTTA
69684720 ATTTAGAGCTTTA
1 ATTTAGAGCTTTA
69684733 CTTTTGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
ATTTAGAGCTTTA
Found at i:69684994 original size:38 final size:38
Alignment explanation
Indices: 69684951--69685031 Score: 153
Period size: 38 Copynumber: 2.1 Consensus size: 38
69684941 TAAATGTTGG
69684951 GGTAATTGTGTAAATTTGAAAAATTAAGAGGTATTAAT
1 GGTAATTGTGTAAATTTGAAAAATTAAGAGGTATTAAT
*
69684989 GGTAATTGTGTAAATTTGAAAAATTAAGGGGTATTAAT
1 GGTAATTGTGTAAATTTGAAAAATTAAGAGGTATTAAT
69685027 GGTAA
1 GGTAA
69685032 AATGAATTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.41, C:0.00, G:0.23, T:0.36
Consensus pattern (38 bp):
GGTAATTGTGTAAATTTGAAAAATTAAGAGGTATTAAT
Found at i:69685474 original size:42 final size:42
Alignment explanation
Indices: 69685427--69685598 Score: 143
Period size: 42 Copynumber: 4.1 Consensus size: 42
69685417 CTCGCATGAA
** * *
69685427 CTTCTGTTTAATTCATATGAGTTTTCGTTCAGCTCTATTGAG
1 CTTCTGTTTAACCCATAAGAGTTTCCGTTCAGCTCTATTGAG
* *
69685469 CTTCTGTTTAACCCTTAAGGGTTTCCGTTCAGCTCTATTGAG
1 CTTCTGTTTAACCCATAAGAGTTTCCGTTCAGCTCTATTGAG
** * * * * *
69685511 CTTCTACTTAACCCTTATGGGTTTCCGTTCAGCT-TTTATAAG
1 CTTCTGTTTAACCCATAAGAGTTTCCGTTCAGCTCTAT-TGAG
* * * * *
69685553 CTTCTGTTCAACCC-TTAGGGTTTCTGTTTAGCTCTCA-TGAG
1 CTTCTGTTTAACCCATAAGAGTTTCCGTTCAGCTCT-ATTGAG
69685594 CTTCT
1 CTTCT
69685599 ATTCAGCCTT
Statistics
Matches: 107, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
41 25 0.23
42 82 0.77
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.44
Consensus pattern (42 bp):
CTTCTGTTTAACCCATAAGAGTTTCCGTTCAGCTCTATTGAG
Found at i:69689376 original size:138 final size:138
Alignment explanation
Indices: 69689121--69689439 Score: 426
Period size: 138 Copynumber: 2.3 Consensus size: 138
69689111 GAGCAACCAT
* * *
69689121 ATGAGGTGCTTGGGTTGTCATCTCGTTTCGCGTCAAAAGGTTTGGTGACGAGCTGAAGCTTGTAA
1 ATGAGGTGCTTGGGTTGTCATCTCGTTTCGCGTCAAAAGGTTTGGTGACGAACCGAAACTTGTAA
**
69689186 CACTCTGCTAACCGAGCTGCCTTAAGAAAGGAGAAATAAATCAATTAAGGACATATGAAATTGAG
66 CACTCCACTAACCGAGCTGCCTTAAGAAAGGAGAAATAAATCAATTAAGGACATATGAAATTGAG
69689251 TAACCAAG-
131 TAA-CAAGA
* * *
69689259 ATGAGGCGCTTGGGTTGCCATCTCGTTTCGCGTCAAAAGGTTTGGTGATGAACCGAAACTTGTAA
1 ATGAGGTGCTTGGGTTGTCATCTCGTTTCGCGTCAAAAGGTTTGGTGACGAACCGAAACTTGTAA
** * * ** * *
69689324 CGTTCCACTAACTGAGCTGCCTTGAGAAAGGAGAAATAAATTGATTAGGGACATGTGAAATTGAG
66 CACTCCACTAACCGAGCTGCCTTAAGAAAGGAGAAATAAATCAATTAAGGACATATGAAATTGAG
* *
69689389 TTACTAGA
131 TAACAAGA
* * *
69689397 ATGA-GTGCTTGGGTTGTCATCTCGTTTTGCATCAAAAAGTTTG
1 ATGAGGTGCTTGGGTTGTCATCTCGTTTCGCGTCAAAAGGTTTG
69689440 ATTATGTCTC
Statistics
Matches: 157, Mismatches: 23, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
137 37 0.24
138 120 0.76
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (138 bp):
ATGAGGTGCTTGGGTTGTCATCTCGTTTCGCGTCAAAAGGTTTGGTGACGAACCGAAACTTGTAA
CACTCCACTAACCGAGCTGCCTTAAGAAAGGAGAAATAAATCAATTAAGGACATATGAAATTGAG
TAACAAGA
Found at i:69691405 original size:39 final size:39
Alignment explanation
Indices: 69691348--69691507 Score: 284
Period size: 39 Copynumber: 4.1 Consensus size: 39
69691338 AAGCAAGACA
69691348 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
69691387 CTAGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
69691426 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
69691465 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
69691504 CTGG
1 CTGG
69691508 TAACATAATT
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:69693223 original size:25 final size:25
Alignment explanation
Indices: 69693189--69693238 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
69693179 TTAGGAGTGT
69693189 TACATTTAGTGGTATCAGAGCTATG
1 TACATTTAGTGGTATCAGAGCTATG
69693214 TACATTTAGTGGTATCAGAGCTATG
1 TACATTTAGTGGTATCAGAGCTATG
69693239 GTTTAGTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (25 bp):
TACATTTAGTGGTATCAGAGCTATG
Found at i:69697660 original size:39 final size:39
Alignment explanation
Indices: 69697615--69697813 Score: 353
Period size: 39 Copynumber: 5.1 Consensus size: 39
69697605 AAGCAAGACA
*
69697615 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
69697654 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
69697693 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
69697732 TTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
69697771 CTGGAAATGTATCCGAGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
69697810 CTGG
1 CTGG
69697814 TAACATAATT
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 155 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:69701310 original size:23 final size:25
Alignment explanation
Indices: 69701275--69701322 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
69701265 TATGTAATAT
* *
69701275 ATGTATTATCATGA-GAA-AAATTA
1 ATGTACTAACATGAGGAATAAATTA
69701298 ATGTACTAACATGAGGAATAAATTA
1 ATGTACTAACATGAGGAATAAATTA
69701323 CCCAATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.57
24 3 0.14
25 6 0.29
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (25 bp):
ATGTACTAACATGAGGAATAAATTA
Found at i:69706056 original size:20 final size:20
Alignment explanation
Indices: 69706028--69706065 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69706018 ATATAAAGAC
* *
69706028 TAAATAGATTTATTTAATAA
1 TAAAGAGATTAATTTAATAA
69706048 TAAAGAGATTAATTTAAT
1 TAAAGAGATTAATTTAAT
69706066 CTAGTCCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (20 bp):
TAAAGAGATTAATTTAATAA
Found at i:69708827 original size:53 final size:54
Alignment explanation
Indices: 69708750--69708870 Score: 201
Period size: 55 Copynumber: 2.3 Consensus size: 54
69708740 ATGGTAAGGG
*
69708750 TTAATTTTAA-TTTTTGAATATTATTTAATA-TTTTTCATTTATTTAATTTTAA
1 TTAATTTTAATTTTTTGAATATTATTTAATATTTTTTCATTTATGTAATTTTAA
69708802 TTAATTTTAATTTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
1 TTAATTTTAATTTTTTGAATATTATTTAATA-TTTTTTCATTTATGTAATTTTAA
*
69708857 TTAATTTTTATTTT
1 TTAATTTTAATTTT
69708871 ATAATTTTTT
Statistics
Matches: 64, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
52 10 0.16
53 20 0.31
55 34 0.53
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (54 bp):
TTAATTTTAATTTTTTGAATATTATTTAATATTTTTTCATTTATGTAATTTTAA
Found at i:69710388 original size:18 final size:18
Alignment explanation
Indices: 69710365--69710406 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
69710355 TGCCAGGTGC
*
69710365 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
69710383 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
69710401 G-ATCCT
1 GTATCCT
69710407 TTTCCCAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.38
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:69713878 original size:39 final size:39
Alignment explanation
Indices: 69713824--69713983 Score: 284
Period size: 39 Copynumber: 4.1 Consensus size: 39
69713814 ATTACCAGCA
* *
69713824 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
69713863 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
69713902 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
69713941 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGGTACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
69713980 CCAG
1 CCAG
69713984 TGTCTTGCAT
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:69720902 original size:39 final size:39
Alignment explanation
Indices: 69720812--69720918 Score: 121
Period size: 39 Copynumber: 2.7 Consensus size: 39
69720802 ATCACGATTT
*
69720812 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
69720852 GCACGAATGCCTTC-GGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
69720891 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
69720919 TTATAATTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
37 1 0.02
38 4 0.07
39 29 0.49
40 25 0.42
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:69724158 original size:37 final size:37
Alignment explanation
Indices: 69724097--69724241 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
69724087 GCTCAGACGA
* * *
69724097 AATCTCCACACGAAGTTATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
69724134 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
69724171 AATCTCCACACGTAGTCATCAGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
69724208 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
69724242 ATATATTTCC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:69724357 original size:48 final size:48
Alignment explanation
Indices: 69724286--69724476 Score: 319
Period size: 48 Copynumber: 4.0 Consensus size: 48
69724276 TGTTACAACA
* *
69724286 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
69724334 TTCACATTCGCCATTCGGCTTTACGACATATACACATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
69724382 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
69724430 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA
69724477 CTGTAACACC
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 131 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:69725975 original size:29 final size:28
Alignment explanation
Indices: 69725941--69726043 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
69725931 TACTCAATCA
*
69725941 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
69725970 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
69725999 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
69726028 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
69726044 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:69727738 original size:48 final size:48
Alignment explanation
Indices: 69727680--69728217 Score: 833
Period size: 48 Copynumber: 11.2 Consensus size: 48
69727670 TTAAGGCTGT
* *
69727680 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* * *
69727728 CATACATATTTCACATTCGCCATTCGGCTTTACCACATGTACATATCA
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* *
69727776 CACATATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCA
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
*
69727824 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* *
69727872 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* * *
69727920 CATACATATTTCACATTCGCCATTCGGCTTTACCACATATACATATCT
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* * * *
69727968 CATACATATTTCACATTCGCCATTCGGCTTTACCATATATACATATCT
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* **
69728016 CATACATATTTCACATTCTCCATTCGGCTTTACCACATATACATATCA
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* *
69728064 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
* *
69728112 CATACATATTTCACATTTCGCCATTCGGCTTTACCACATATACATATCA
1 CACACATATTTCACA-TTAGCCATTCGGCTTTACCACATATACATATCA
*
69728161 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
1 CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
*
69728209 CACATATAT
1 CACACATAT
69728218 ATATTTATCT
Statistics
Matches: 458, Mismatches: 31, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
48 414 0.90
49 44 0.10
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
CACACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCA
Found at i:69727814 original size:96 final size:96
Alignment explanation
Indices: 69727680--69728207 Score: 939
Period size: 96 Copynumber: 5.5 Consensus size: 96
69727670 TTAAGGCTGT
69727680 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
69727745 CGCCATTCGGCTTTACCACATGTACATATCA
66 CGCCATTCGGCTTTACCACATATACATATCA
* * * *
69727776 CACATATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATATTTCACATT
1 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
69727841 AGCCATTCGGCTTTACCACATATACATATCA
66 CGCCATTCGGCTTTACCACATATACATATCA
69727872 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
69727937 CGCCATTCGGCTTTACCACATATACATATCT
66 CGCCATTCGGCTTTACCACATATACATATCA
* * * *
69727968 CATACATATTTCACATTCGCCATTCGGCTTTACCATATATACATATCTCATACATATTTCACATT
1 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
69728033 CTCCATTCGGCTTTACCACATATACATATCA
66 CGCCATTCGGCTTTACCACATATACATATCA
69728064 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA-T
69728129 TCGCCATTCGGCTTTACCACATATACATATCA
65 TCGCCATTCGGCTTTACCACATATACATATCA
69728161 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
69728208 ACACATATAT
Statistics
Matches: 408, Mismatches: 23, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
96 329 0.81
97 79 0.19
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (96 bp):
CACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
CGCCATTCGGCTTTACCACATATACATATCA
Found at i:69735721 original size:126 final size:127
Alignment explanation
Indices: 69735487--69735741 Score: 361
Period size: 126 Copynumber: 2.0 Consensus size: 127
69735477 GGCCAAACAT
* * *
69735487 GAACTACTTTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTTAGAAATTTTGCTGACATTGCAT
1 GAACTACTCTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGAAATTTTGCTGACAGTGCAT
* * *
69735552 CCTGCTTGAAGCGTTTTTGACACTATTTGCTCAAAAATATCTTCTCAAAATTATTTTTTCAG
66 CCTGCTTGAAACATTTTTGACACTATTTGCTCAAAAACATCTTCTCAAAATTATTTTTTCAG
* * *
69735614 GAACTGCTCTAGAAAAAGAGCATCCACGTGGGAGC-TTTTTTCAGTAATTTTGCAT-ACAGTGCA
1 GAACTACTCTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGAAATTTTGC-TGACAGTGCA
* * * * *
69735677 TCTTGCTTGAAACATTTTTGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAG
65 TCCTGCTTGAAACATTTTTGACACTATTTGCTCAAAAACATCTTCTCAAAATTATTTTTTCAG
69735740 GA
1 GA
69735742 TAAAAATAGT
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
126 80 0.71
127 33 0.29
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (127 bp):
GAACTACTCTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTTCAGAAATTTTGCTGACAGTGCAT
CCTGCTTGAAACATTTTTGACACTATTTGCTCAAAAACATCTTCTCAAAATTATTTTTTCAG
Found at i:69735824 original size:31 final size:30
Alignment explanation
Indices: 69735760--69735824 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
69735750 GTCAATTTTG
* ***
69735760 TTAAAAAAACTAAACACAATTTTATTTTTT
1 TTAAAAAAACTAAACACAATTTAATTAAGT
*
69735790 TTAAAAAAACTAAACCCTAATTTAATTAAGT
1 TTAAAAAAACTAAACAC-AATTTAATTAAGT
69735821 TTAA
1 TTAA
69735825 CCTTAAACCC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (30 bp):
TTAAAAAAACTAAACACAATTTAATTAAGT
Found at i:69735912 original size:33 final size:33
Alignment explanation
Indices: 69735800--69735923 Score: 142
Period size: 34 Copynumber: 3.7 Consensus size: 33
69735790 TTAAAAAAAC
* *
69735800 TAAACCCTAATTTAATTAAGTTTAACCTT-AAACCC
1 TAAACCCTAATTTAATTAA-TTT-A-TTTAAAACCA
* * *
69735835 TAAATCCTAATTTAATTAATTTATTGAAAACCCT
1 TAAACCCTAATTTAATTAATTTATTTAAAA-CCA
* *
69735869 TAAACACTAATTTACTTAATTTATTTAAAACCA
1 TAAACCCTAATTTAATTAATTTATTTAAAACCA
69735902 TAAACCCTAATTTAATTAATTT
1 TAAACCCTAATTTAATTAATTT
69735924 TTACAAAATA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
32 1 0.01
33 26 0.34
34 31 0.41
35 18 0.24
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.40
Consensus pattern (33 bp):
TAAACCCTAATTTAATTAATTTATTTAAAACCA
Found at i:69736041 original size:34 final size:34
Alignment explanation
Indices: 69735967--69736042 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
69735957 AAAATTCACT
* *
69735967 AAAACCCTAAACCTTAACTTATTTTAACAAAAAC
1 AAAACCTTAAACCTTAAATTATTTTAACAAAAAC
* *
69736001 ATAAACCTTAAACC-TAAATTATTTTAGCAAAACCC
1 A-AAACCTTAAACCTTAAATTATTTTAACAAAA-AC
69736036 AAAACCT
1 AAAACCT
69736043 AAAAACCCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
34 23 0.64
35 13 0.36
ACGTcount: A:0.49, C:0.24, G:0.01, T:0.26
Consensus pattern (34 bp):
AAAACCTTAAACCTTAAATTATTTTAACAAAAAC
Found at i:69738684 original size:27 final size:28
Alignment explanation
Indices: 69738627--69738696 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
69738617 GTGACAGAGT
** *
69738627 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTACGTGGCAGGGC
69738656 CACCAGAACAGATA-TACGTGGCAGGGC
1 CACCAGAACAGATATTACGTGGCAGGGC
69738683 CACCAGAACAGATA
1 CACCAGAACAGATA
69738697 ATTTGTGGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 24 0.63
28 7 0.18
29 7 0.18
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (28 bp):
CACCAGAACAGATATTACGTGGCAGGGC
Found at i:69738713 original size:28 final size:27
Alignment explanation
Indices: 69738627--69738715 Score: 90
Period size: 27 Copynumber: 3.2 Consensus size: 27
69738617 GTGACAGAGT
*
69738627 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
69738656 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
69738683 CACCAGAACAGATAATTTGTGGTATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
69738711 CACCA
1 CACCA
69738716 TGTAATATCC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
27 23 0.46
28 20 0.40
29 7 0.14
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:69739591 original size:46 final size:44
Alignment explanation
Indices: 69739538--69739709 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 44
69739528 TGGTTGAGCA
69739538 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * * * * *
69739584 TCTGAACTCGTTGAGTTGAGTCCGAG-TGA--GATGTAACTAGGCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATG-GA-T-GGAAG
* *
69739627 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAA-G
* * *
69739673 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
69739710 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 28 0.27
44 7 0.07
45 6 0.06
46 61 0.60
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (44 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:69739687 original size:89 final size:89
Alignment explanation
Indices: 69739535--69739699 Score: 258
Period size: 89 Copynumber: 1.9 Consensus size: 89
69739525 GGATGGTTGA
* * * * *
69739535 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
69739600 TGAGTCCGAGTGAGATGTAACTAG
66 TGAGTCCGAGTGAGATGTAACTAG
* * *
69739624 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
69739689 TGAGTCCGAGT
66 TGAGTCCGAGT
69739700 TCGCTTATGG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (89 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTGAGATGTAACTAG
Found at i:69741279 original size:28 final size:28
Alignment explanation
Indices: 69741128--69741277 Score: 237
Period size: 28 Copynumber: 5.4 Consensus size: 28
69741118 AAATTAACCC
* * *
69741128 TAGGGGTACAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
69741156 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
69741184 TAGGGGTATAATGGTAATTTTGCATAAA
1 TAGGGGTATAATGGTAATTTTGCATACA
69741212 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
* *
69741240 TAAGGGTATACTGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
69741268 TAGGGCTATA
1 TAGGGGTATA
69741278 CTAGTACATC
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 113 1.00
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:69744059 original size:31 final size:32
Alignment explanation
Indices: 69743999--69744066 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 32
69743989 GTGAATAATA
*
69743999 CAGTATCAGTACAGTCTGGGCCAATCCCTATT
1 CAGTATCAGTACAGTCTGGGCCAAGCCCTATT
*
69744031 CAGTATCCGTACAGTCT-GGCCAAGCCCTATT
1 CAGTATCAGTACAGTCTGGGCCAAGCCCTATT
69744062 CAGTA
1 CAGTA
69744067 GTAGAGTGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 18 0.53
32 16 0.47
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (32 bp):
CAGTATCAGTACAGTCTGGGCCAAGCCCTATT
Found at i:69749817 original size:29 final size:29
Alignment explanation
Indices: 69749775--69749887 Score: 190
Period size: 29 Copynumber: 3.9 Consensus size: 29
69749765 AGTGCCGTAT
**
69749775 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
69749804 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
69749833 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
69749862 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
69749888 TCTCGTCACC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 80 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:69749854 original size:58 final size:57
Alignment explanation
Indices: 69749756--69749886 Score: 199
Period size: 58 Copynumber: 2.3 Consensus size: 57
69749746 CCTCCGAACT
** * **
69749756 CGCACACCCAGTGCCGTATTTTCCAGCTTGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATTTTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCA
*
69749813 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCA
69749871 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69749887 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
57 16 0.24
58 51 0.76
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (57 bp):
CGCACACTTAGTGCCATATTTTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCA
Found at i:69752588 original size:31 final size:31
Alignment explanation
Indices: 69752550--69752613 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
69752540 CCTTTTCATA
69752550 TTTCATATTTCACAACACTGGGCCGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
* **
69752581 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
69752612 TT
1 TT
69752614 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTTCACAACACTGGGCCGAAGCCT
Found at i:69752882 original size:23 final size:23
Alignment explanation
Indices: 69752807--69752923 Score: 173
Period size: 23 Copynumber: 5.0 Consensus size: 23
69752797 GCTTTATCAT
*
69752807 ATAACTGGAGGCCT-AGCCTCTTTGA
1 ATAACTGG-GGCATAAGCC-CTTT-A
*
69752832 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
69752856 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
69752879 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
69752902 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
69752924 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
23 49 0.56
24 23 0.26
25 15 0.17
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:69752999 original size:20 final size:20
Alignment explanation
Indices: 69752974--69753040 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
69752964 TTATGATTAC
69752974 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
69752994 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
69753014 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
69753034 ACCATGT
1 ATCATGT
69753041 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:69753005 original size:11 final size:11
Alignment explanation
Indices: 69752974--69753029 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
69752964 TTATGATTAC
69752974 ATCATGTGCAT
1 ATCATGTGCAT
*
69752985 ATCA--TACAT
1 ATCATGTGCAT
69752994 ATCATGTGCAT
1 ATCATGTGCAT
*
69753005 ATCA--TACAT
1 ATCATGTGCAT
*
69753014 GTCATGTGCAT
1 ATCATGTGCAT
69753025 ATCAT
1 ATCAT
69753030 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:69753122 original size:24 final size:24
Alignment explanation
Indices: 69753077--69753123 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
69753067 ATACATAAAC
* * * *
69753077 CCTAGGGGTATAATGGTTATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
69753101 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69753124 CATGTTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:69760176 original size:32 final size:32
Alignment explanation
Indices: 69760139--69760206 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
69760129 TGAAGAACAT
69760139 AGTATCAGTACAATCTGGGCCAAGCCCTATTC
1 AGTATCAGTACAATCTGGGCCAAGCCCTATTC
* *
69760171 AGTATCTGTACAGTCTGGGCCAAGCCCTATTC
1 AGTATCAGTACAATCTGGGCCAAGCCCTATTC
69760203 AGTA
1 AGTA
69760207 GTAAAGTGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (32 bp):
AGTATCAGTACAATCTGGGCCAAGCCCTATTC
Found at i:69762336 original size:31 final size:31
Alignment explanation
Indices: 69762288--69762373 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 31
69762278 TCAATCTCAG
69762288 CATA-CACTGGGCCGAAGCCTTTACATTA-T
1 CATATCACTGGGCCGAAGCCTTTACATTACT
* * * *
69762317 CCATGTCACTGAGCTGAAGCCTTTTCATTACT
1 -CATATCACTGGGCCGAAGCCTTTACATTACT
69762349 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
69762374 TGCAAACGGT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
30 3 0.07
31 42 0.91
32 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTACT
Found at i:69762621 original size:25 final size:25
Alignment explanation
Indices: 69762593--69762662 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
69762583 CTCTTTTAAT
* *
69762593 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
69762618 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
69762643 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69762663 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:69762821 original size:25 final size:25
Alignment explanation
Indices: 69762793--69762840 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69762783 ATAATTAAAC
* **
69762793 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
69762818 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
69762841 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:69768502 original size:40 final size:40
Alignment explanation
Indices: 69768438--69768609 Score: 233
Period size: 40 Copynumber: 4.3 Consensus size: 40
69768428 CCTTAGGGAA
* * *
69768438 TTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCAGGAC
69768477 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGAC
* * *
69768517 TTAGCCCGGTTATAGCCACTAGCATAAATGCCTTC-GAGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAG-GAC
*
69768557 TTAGCCCGGATATAGTCACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGAC
*
69768597 TTAGCCCAGATAT
1 TTAGCCCGGATAT
69768610 CATCCGAATA
Statistics
Matches: 120, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 5 0.04
40 113 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGAC
Found at i:69768580 original size:80 final size:80
Alignment explanation
Indices: 69768438--69768609 Score: 265
Period size: 80 Copynumber: 2.2 Consensus size: 80
69768428 CCTTAGGGAA
* * *
69768438 TTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAC
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACTAGCAC
69768502 AAATGCCTTCAGGAC
66 AAATGCCTTCAGGAC
* * * *
69768517 TTAGCCCGGTTATAGCCACTAGCATAAATGCCTTCGAGACTTAGCCCGGATATAGTCACTAGCAT
1 TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACTAGCAC
69768582 AAATGCCTTCAGGAC
66 AAATGCCTTCAGGAC
*
69768597 TTAGCCCAGATAT
1 TTAGCCCGGATAT
69768610 CATCCGAATA
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 4 0.05
80 79 0.95
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACTAGCAC
AAATGCCTTCAGGAC
Found at i:69778646 original size:39 final size:40
Alignment explanation
Indices: 69778485--69778648 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 40
69778475 ATTGAATGAC
* * * **
69778485 ATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATTAT
* * * **
69778524 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTAT
* * *
69778564 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTAT
69778604 ATCCGGGCTAAGACCC-AAGGCATTTGTGC-ACGTGATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATTAT
69778643 ATCCGG
1 ATCCGG
69778649 TTATATTCCG
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 35 0.34
40 67 0.65
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTAT
Found at i:69781619 original size:28 final size:28
Alignment explanation
Indices: 69781554--69781654 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69781544 ATAGTGAATC
*
69781554 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69781583 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69781611 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69781641 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69781655 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69795608 original size:28 final size:29
Alignment explanation
Indices: 69795545--69795616 Score: 128
Period size: 28 Copynumber: 2.5 Consensus size: 29
69795535 GTGACGAGAT
*
69795545 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69795574 TGGCACTAAGTGTGCATGCTGG-AATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
69795602 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
69795617 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 21 0.50
29 21 0.50
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:69803451 original size:29 final size:29
Alignment explanation
Indices: 69803418--69803491 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
69803408 GTGACGAGAT
69803418 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
69803447 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
69803476 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69803492 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:69803507 original size:29 final size:29
Alignment explanation
Indices: 69803475--69803550 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
69803465 CTGGAAATAT
* *
69803475 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
69803504 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
69803533 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
69803551 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:69803518 original size:58 final size:58
Alignment explanation
Indices: 69803418--69803550 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
69803408 GTGACGAGAT
* * * * * *
69803418 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
69803476 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
69803534 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
69803551 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:69810868 original size:143 final size:141
Alignment explanation
Indices: 69810659--69810954 Score: 565
Period size: 143 Copynumber: 2.1 Consensus size: 141
69810649 GTGAGTTAAA
*
69810659 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
69810724 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTG
69810789 TGTGTGCATGAGT
129 TGTGTGCATGAGT
69810802 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
69810867 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
69810932 TGTGCATGAGT
131 TGTGCATGAGT
69810943 ATTCGGCCATGC
1 ATTCGGCCATGC
69810955 TATAGAATTT
Statistics
Matches: 152, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 123 0.81
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (141 bp):
ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
TGTGCATGAGT
Found at i:69811630 original size:29 final size:29
Alignment explanation
Indices: 69811597--69811728 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
69811587 GTGACGAGAT
*
69811597 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
69811626 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
69811655 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
69811684 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
69811713 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
69811729 AGCTCGAGGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:69818824 original size:143 final size:143
Alignment explanation
Indices: 69818615--69818912 Score: 587
Period size: 143 Copynumber: 2.1 Consensus size: 143
69818605 GTGAGTTAAA
*
69818615 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
69818680 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
69818745 TGTGTGCATGAGT
131 TGTGTGCATGAGT
69818758 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
69818823 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
69818888 TGTGTGCATGAGT
131 TGTGTGCATGAGT
69818901 ATTCGGCCATGC
1 ATTCGGCCATGC
69818913 TATAGAATTT
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 154 1.00
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (143 bp):
ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
TGTGTGCATGAGT
Found at i:69819587 original size:29 final size:29
Alignment explanation
Indices: 69819554--69819685 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
69819544 GTGACGAGAT
*
69819554 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
69819583 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
69819612 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
69819641 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
69819670 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
69819686 AGCTCGAGGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:69823045 original size:30 final size:30
Alignment explanation
Indices: 69822923--69823176 Score: 108
Period size: 30 Copynumber: 8.5 Consensus size: 30
69822913 TCATCGACAA
* *
69822923 ATGAAAATG-GATAGCTTCAAGCTAACAAA-T
1 ATGAAAA-GAGATGGCTTC-AGCTATCAAATT
* ** *
69822953 ATGAAAAGGGATAACTTC-GACTATC-GATT
1 ATGAAAAGAGATGGCTTCAG-CTATCAAATT
* * * * *
69822982 ATGAAAAGGGATGG-TGACGGCCATCAAACT
1 ATGAAAAGAGATGGCT-TCAGCTATCAAATT
* * * *
69823012 ATGAATAGAGATGGCTTCGGCTATCGATTT
1 ATGAAAAGAGATGGCTTCAGCTATCAAATT
* **
69823042 ATGAAAAGGGATAACTTCAGCTATCAAATT
1 ATGAAAAGAGATGGCTTCAGCTATCAAATT
* * *
69823072 ATGAAAAGAGATGG--TGACGACCATCAAGTT
1 ATGAAAAGAGATGGCTTCA-G-CTATCAAATT
* ** * * *
69823102 ATGAAAAGGGACAGCTTCAACTATCGAACT
1 ATGAAAAGAGATGGCTTCAGCTATCAAATT
* ** *
69823132 ATGAAAAAGGGATAACTTCAGTTATCAAATT
1 ATG-AAAAGAGATGGCTTCAGCTATCAAATT
*
69823163 ATGAAAAGGGATGG
1 ATGAAAAGAGATGG
69823177 GTTAACCATC
Statistics
Matches: 166, Mismatches: 46, Indels: 24
0.70 0.19 0.10
Matches are distributed among these distances:
28 5 0.03
29 24 0.14
30 110 0.66
31 25 0.15
32 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (30 bp):
ATGAAAAGAGATGGCTTCAGCTATCAAATT
Found at i:69823069 original size:60 final size:59
Alignment explanation
Indices: 69822923--69823138 Score: 195
Period size: 60 Copynumber: 3.6 Consensus size: 59
69822913 TCATCGACAA
* * * **
69822923 ATGAAAATGGATAGCTTCAAGCTAACAAA-TATGAAAAGGGATAACTTCGACTATCGATT
1 ATGAAAAGGGATAGCTTC-AGCTATCAAACTATGAAAAGAGATGGCTTCGACTATCGATT
* * * * * *
69822982 ATGAAAAGGGAT-GGTGACGGCCATCAAACTATGAATAGAGATGGCTTCGGCTATCGATTT
1 ATGAAAAGGGATAGCT-TCAGCTATCAAACTATGAAAAGAGATGGCTTCGACTATCGA-TT
* * * * *
69823042 ATGAAAAGGGATAACTTCAGCTATCAAATTATGAAAAGAGATGG-TGACGACCATCAAGTT
1 ATGAAAAGGGATAGCTTCAGCTATCAAACTATGAAAAGAGATGGCT-TCGACTATCGA-TT
* * *
69823102 ATGAAAAGGGACAGCTTCAACTATCGAACTATGAAAA
1 ATGAAAAGGGATAGCTTCAGCTATCAAACTATGAAAA
69823139 AGGGATAACT
Statistics
Matches: 124, Mismatches: 28, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
58 9 0.07
59 36 0.29
60 78 0.63
61 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (59 bp):
ATGAAAAGGGATAGCTTCAGCTATCAAACTATGAAAAGAGATGGCTTCGACTATCGATT
Found at i:69823105 original size:90 final size:90
Alignment explanation
Indices: 69822935--69823176 Score: 292
Period size: 90 Copynumber: 2.7 Consensus size: 90
69822925 GAAAATGGAT
* * *
69822935 AGCTTCAAGCTAAC-AAATATGAAAAGGGATAACTTC-GACTATC-GATTATGAAAAGGGATGGT
1 AGCTTCAA-CTATCGAACTATGAAAAGGGATAACTTCAG-CTATCAAATTATGAAAAGGGATGGT
* * *
69822997 GACGGCCATCAAACTATGAATAGAGAT
64 GACGACCATCAAACTATGAAAAGAGAC
* ** ** *
69823024 GGCTTCGGCTATCGATTTATGAAAAGGGATAACTTCAGCTATCAAATTATGAAAAGAGATGGTGA
1 AGCTTCAACTATCGAACTATGAAAAGGGATAACTTCAGCTATCAAATTATGAAAAGGGATGGTGA
** *
69823089 CGACCATCAAGTTATGAAAAGGGAC
66 CGACCATCAAACTATGAAAAGAGAC
*
69823114 AGCTTCAACTATCGAACTATGAAAAAGGGATAACTTCAGTTATCAAATTATGAAAAGGGATGG
1 AGCTTCAACTATCGAACTATG-AAAAGGGATAACTTCAGCTATCAAATTATGAAAAGGGATGG
69823177 GTTAACCATC
Statistics
Matches: 128, Mismatches: 21, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
88 4 0.03
89 30 0.23
90 55 0.43
91 39 0.30
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (90 bp):
AGCTTCAACTATCGAACTATGAAAAGGGATAACTTCAGCTATCAAATTATGAAAAGGGATGGTGA
CGACCATCAAACTATGAAAAGAGAC
Found at i:69828833 original size:25 final size:25
Alignment explanation
Indices: 69828784--69828833 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
69828774 TTGAATTCGT
* * *
69828784 GTATAGTAATAGTTATCAATTGAGC
1 GTATAATAACAGTTATCAATCGAGC
*
69828809 GTATAATAACAGTTATCAGTCGAGC
1 GTATAATAACAGTTATCAATCGAGC
69828834 ATAAAAATGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (25 bp):
GTATAATAACAGTTATCAATCGAGC
Found at i:69830647 original size:29 final size:29
Alignment explanation
Indices: 69830583--69830682 Score: 137
Period size: 29 Copynumber: 3.4 Consensus size: 29
69830573 CCATCAACAA
* * * *
69830583 ATGAAAATGGATAGCTTCGGGCTAACGAAT
1 ATGAAAAGGGATAGCTT-TGGCTATCGATT
*
69830613 ACGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
69830642 ATGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
*
69830671 ATGAAAACGGAT
1 ATGAAAAGGGAT
69830683 GGTGATGACC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
29 48 0.76
30 15 0.24
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTTGGCTATCGATT
Found at i:69834060 original size:30 final size:30
Alignment explanation
Indices: 69833983--69834067 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 30
69833973 TACATAGCTT
69833983 CGACTATTGAATTATGAAAAGGGATGGTGA
1 CGACTATTGAATTATGAAAAGGGATGGTGA
* * **
69834013 CAACTATGGAACAATGAAAAGGGATGGTGA
1 CGACTATTGAATTATGAAAAGGGATGGTGA
* *
69834043 CGACCATTAAATTATGAAAAGGGAT
1 CGACTATTGAATTATGAAAAGGGAT
69834068 AGCTCCAGCT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.22
Consensus pattern (30 bp):
CGACTATTGAATTATGAAAAGGGATGGTGA
Found at i:69840900 original size:39 final size:39
Alignment explanation
Indices: 69840846--69840971 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
69840836 AGTGATGAAG
*
69840846 TATATCCGGACTTAAGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
69840885 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
69840924 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
69840963 TATGTCCGG
1 TATATCCGG
69840972 GCTAAAGTCC
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:69840988 original size:78 final size:78
Alignment explanation
Indices: 69840846--69840989 Score: 200
Period size: 78 Copynumber: 1.8 Consensus size: 78
69840836 AGTGATGAAG
* * * * * *
69840846 TATATCCGGACTTAAGGTCCGTAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGC
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
69840911 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* *
69840924 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCACAGG
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCACAGG
69840988 CT
65 CT
69840990 TCGAGCTGGT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 5 0.09
78 52 0.91
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
TATGTGCTGGAAT
Found at i:69840998 original size:78 final size:78
Alignment explanation
Indices: 69840846--69841009 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
69840836 AGTGATGAAG
* * * * * *
69840846 TATATCCGGACTTAAGGTCCGTAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGC
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
*
69840911 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* *
69840924 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCACAGG
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCACAGG
*
69840988 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
69841002 TAT-ACCGG
1 TATAACCGG
69841010 GTTTAAATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 11 0.15
78 63 0.85
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
TATGAGCTGGAAT
Found at i:69845483 original size:94 final size:94
Alignment explanation
Indices: 69845317--69845692 Score: 671
Period size: 94 Copynumber: 4.0 Consensus size: 94
69845307 AAGGTGACCG
* * * *
69845317 TATATGCTATTTAAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTACG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
69845382 GAATTAAATGTCACTTTGTGTGTAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
69845411 TATAAGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
69845476 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
69845505 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
69845570 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
69845599 TATATGCTATTTGAATTAAGTAAATTACCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
69845664 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
69845693 GAATGTCTTC
Statistics
Matches: 272, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 272 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:69845758 original size:24 final size:25
Alignment explanation
Indices: 69845705--69845767 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
69845695 ATGTCTTCAG
* * *
69845705 GCACTATGTGTGCG-GTTTAGTATG
1 GCACTATGTGTGCGAGCTTAATATA
*
69845729 GAACTATGTGTGCGAGCTTAAT-TA
1 GCACTATGTGTGCGAGCTTAATATA
69845753 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
69845768 ATTTGGTTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.33
Consensus pattern (25 bp):
GCACTATGTGTGCGAGCTTAATATA
Found at i:69848764 original size:46 final size:46
Alignment explanation
Indices: 69848711--69848886 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69848701 TATTTGGGCA
69848711 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
69848757 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
69848804 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
69848850 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69848887 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:69848866 original size:93 final size:93
Alignment explanation
Indices: 69848707--69848878 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69848697 GGGATATTTG
* *
69848707 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69848772 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
69848800 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69848865 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69848879 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69850723 original size:46 final size:44
Alignment explanation
Indices: 69850666--69850780 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
69850656 ACAGGACAGA
*
69850666 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGAAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
69850712 ACAGAATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGAAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* * **
69850756 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGAAATGAGCCATGTAAGTCCAT
69850781 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 34 0.56
46 27 0.44
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (44 bp):
ACAGAAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:69850772 original size:44 final size:45
Alignment explanation
Indices: 69850666--69850799 Score: 137
Period size: 46 Copynumber: 3.0 Consensus size: 45
69850656 ACAGGACAGA
* * *
69850666 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGAATTAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
69850712 ACAGAATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGAATTAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
** * * *
69850756 ACAGGAA-TAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACA-GAATTAAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
69850800 CAGGATATTG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
44 33 0.44
45 4 0.05
46 38 0.51
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (45 bp):
ACAGAATTAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:69858101 original size:46 final size:44
Alignment explanation
Indices: 69858042--69858156 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
69858032 ACAGGACAGA
* *
69858042 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
69858088 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
69858132 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
69858157 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:69858137 original size:44 final size:45
Alignment explanation
Indices: 69858042--69858175 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
69858032 ACAGGACAGA
* *
69858042 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
69858088 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
69858132 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
69858176 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:69861603 original size:49 final size:48
Alignment explanation
Indices: 69861545--69861776 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 48
69861535 CTGGTACGCA
*
69861545 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTAT-CAGTACACG
* ** *
69861594 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCAG-TACACG
* * * *
69861644 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCA-GTACACG
* *
69861695 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC-AGTACACG
*
69861744 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
69861777 TCACAATAGC
Statistics
Matches: 158, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
49 74 0.47
50 46 0.29
51 37 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGTACACG
Found at i:69861763 original size:100 final size:99
Alignment explanation
Indices: 69861531--69861776 Score: 343
Period size: 100 Copynumber: 2.5 Consensus size: 99
69861521 GTAGCCGAAG
* * * * *
69861531 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACATA
*
69861596 GTAGCCTGCACTTAGTACTACACACGTGACCTAA
66 GTAGCCTGCACTTAGTACTACACACGCGACCTAA
** * * *
69861630 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CAGGTACGC
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCA-GTACAC
*
69861694 ATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
63 ATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
69861730 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
69861777 TCACAATAGC
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 39 0.30
100 49 0.38
101 40 0.31
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACATA
GTAGCCTGCACTTAGTACTACACACGCGACCTAA
Found at i:69862453 original size:30 final size:30
Alignment explanation
Indices: 69862419--69862478 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69862409 CTTTAATACG
69862419 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
69862449 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
69862479 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:69864535 original size:14 final size:14
Alignment explanation
Indices: 69864516--69864543 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69864506 AGAAGCCAAG
69864516 AATAAAGAAATCCA
1 AATAAAGAAATCCA
69864530 AATAAAGAAATCCA
1 AATAAAGAAATCCA
69864544 TGTACGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14
Consensus pattern (14 bp):
AATAAAGAAATCCA
Found at i:69867153 original size:46 final size:46
Alignment explanation
Indices: 69867098--69867278 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
69867088 TAGGATGGTT
69867098 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
69867144 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
69867190 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** * *
69867237 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69867279 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:69867259 original size:93 final size:93
Alignment explanation
Indices: 69867100--69867271 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69867090 GGATGGTTGA
* *
69867100 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69867165 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69867193 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69867258 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69867272 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69870169 original size:49 final size:49
Alignment explanation
Indices: 69870071--69870184 Score: 149
Period size: 48 Copynumber: 2.3 Consensus size: 49
69870061 CTAGTACGCA
* ** *
69870071 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACG
* *
69870120 TAGTAG-CTGCACTTAGTACTACACACGTGACCAAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACG
*
69870169 TAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTA
69870185 TTATGTAATG
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
48 24 0.43
49 24 0.43
50 8 0.14
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACG
Found at i:69871558 original size:46 final size:46
Alignment explanation
Indices: 69871491--69871662 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
69871481 TGTAACCCGC
* *
69871491 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCAT
* * *
69871537 CCATAAGTGAACTCGGACTCAACTCAACGACGAT--GCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGA-GTTCGGACT--TTCGCAT
* * * *
69871583 -C-TCA-CGAACTCGGACTCAACTCAGCGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCAT
69871626 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69871663 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 4 0.04
43 24 0.23
44 5 0.05
45 6 0.06
46 61 0.59
47 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACTTTCGCAT
Found at i:69873752 original size:30 final size:30
Alignment explanation
Indices: 69873718--69873777 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69873708 CTTTAATACG
69873718 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
** *
69873748 AACTTTTTCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
69873778 GGCTCGCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:69877194 original size:7 final size:7
Alignment explanation
Indices: 69877182--69877209 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
69877172 TTCAAGGAAT
69877182 TCATTCA
1 TCATTCA
69877189 TCATTCA
1 TCATTCA
69877196 TCATTCA
1 TCATTCA
69877203 TCATTCA
1 TCATTCA
69877210 GGAAGTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (7 bp):
TCATTCA
Found at i:69882069 original size:30 final size:30
Alignment explanation
Indices: 69882035--69882131 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
69882025 TAAACTAAAA
* *
69882035 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * *
69882065 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
69882095 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
69882125 TGAGCTA
1 TGAGCTA
69882132 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:69882698 original size:13 final size:14
Alignment explanation
Indices: 69882667--69882710 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 14
69882657 TGACCACCAT
69882667 TTCTTCT-TCT-TC
1 TTCTTCTCTCTCTC
69882679 TTCTTCTCTCTCTC
1 TTCTTCTCTCTCTC
*
69882693 -TCTTCTCTCTCTT
1 TTCTTCTCTCTCTC
69882706 TTCTT
1 TTCTT
69882711 TGGAGTCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 7 0.25
13 15 0.54
14 6 0.21
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (14 bp):
TTCTTCTCTCTCTC
Found at i:69885119 original size:93 final size:93
Alignment explanation
Indices: 69885011--69885183 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
69885001 CGCCCATAAG
*
69885011 CGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
*
69885075 AATGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
69885104 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
69885169 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
69885184 CAAATATCCG
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:69885170 original size:46 final size:46
Alignment explanation
Indices: 69885004--69885179 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
69884994 TGTAACCCGC
*
69885004 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACGTTCGCAT
* * *
69885050 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* *
69885100 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
69885143 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
69885180 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 4 0.04
46 62 0.56
47 27 0.24
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:69886910 original size:34 final size:33
Alignment explanation
Indices: 69886849--69886915 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
69886839 CTATTATTGA
* *
69886849 AATGGGCTAAGGCCCACACTGATACTGATACTGT
1 AATGGGCTAAGGCCCACACAGAAACTGA-ACTGT
*
69886883 AATGGGCTAAGGCCTTA-ACAGAAACTGAACTGT
1 AATGGGCTAAGGCC-CACACAGAAACTGAACTGT
69886916 TACTGATACG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 5 0.17
34 23 0.79
35 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (33 bp):
AATGGGCTAAGGCCCACACAGAAACTGAACTGT
Found at i:69891644 original size:79 final size:80
Alignment explanation
Indices: 69891451--69891675 Score: 273
Period size: 80 Copynumber: 2.8 Consensus size: 80
69891441 TCGAATGATG
* * *
69891451 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAATCT-CGGGCTAAG-TCCCGAAGGCA
69891513 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
69891531 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCTCGGGCTAAGTCCCGAAGGCGTT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAATCTCGGGCTAAGTCCCGAAGGCATT
* *
69891595 TGTGCGAGTTATTATA
65 TGTGCGAGTTACTAAA
* *
69891611 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAAC-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-ATCTCGGGCTAAGTCCCGAAGGCATT
69891674 TG
65 TG
69891676 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 56 0.44
80 57 0.45
81 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATCTCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:69891667 original size:119 final size:120
Alignment explanation
Indices: 69891453--69891675 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 120
69891443 GAATGATGTC
69891453 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTGT
*
69891518 GCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCT
66 GCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCT
* * ** *
69891573 CGGGCTAAGTCCCGAAGGCGTTTGTGC-GAGTTATTATA-CCGGGCTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCATTT
* *
69891635 GTGCAAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 GTGCAAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
69891676 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
118 2 0.02
119 54 0.59
120 28 0.31
121 7 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTGT
GCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCT
Found at i:69891689 original size:40 final size:39
Alignment explanation
Indices: 69891452--69891675 Score: 208
Period size: 40 Copynumber: 5.6 Consensus size: 39
69891442 CGAATGATGT
* * *
69891452 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG--AAGTTACTATAA
* *
69891492 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTG-AAGTTACTATAA
* * *
69891531 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTG-AAGTTACTATAA
* * *
69891571 CTCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTAT-A
1 C-CGGGCTAAGTCCCGAAGGCATTTGTG-AAGTTACTATAA
69891611 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-AAGTTACTATAA
*
69891651 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69891676 AATGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 37 0.23
40 118 0.73
41 7 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGAAGTTACTATAA
Found at i:69891708 original size:79 final size:79
Alignment explanation
Indices: 69891452--69891675 Score: 208
Period size: 79 Copynumber: 2.8 Consensus size: 79
69891442 CGAATGATGT
* * *
69891452 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATA-TCCGGACTAAGAT-CCGAAGGCA
1 CCGGGCTAAATCCCGAAGGCATTTGTGC-AAGTTACTAA-ACT-CGGGCTAAG-TCCCGAAGGCA
* * * *
69891513 TTTGTGCGAGTTACTAAA
62 TTTGTGAGAGCTATTATA
* * * *
69891531 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCTCGGGCTAAGTCCCGAAGGCGTT
1 -CCGGGCTAA-ATCCCGAAGGCATTTGTGCAAGTTACTAAACTCGGGCTAAGTCCCGAAGGCATT
* *
69891595 TGTGCGAGTTATTATA
64 TGTGAGAGCTATTATA
* *
69891611 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAAC-CGGGCTATGTCCCGAAGGCATTT
1 CCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACTA-AACTCGGGCTAAGTCCCGAAGGCATTT
69891675 G
65 G
69891676 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
78 1 0.01
79 55 0.45
80 55 0.45
81 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAATCCCGAAGGCATTTGTGCAAGTTACTAAACTCGGGCTAAGTCCCGAAGGCATTTG
TGAGAGCTATTATA
Found at i:69895835 original size:50 final size:49
Alignment explanation
Indices: 69895762--69896038 Score: 181
Period size: 51 Copynumber: 5.5 Consensus size: 49
69895752 TTAGGTCACG
*
69895762 TGTGTAGTACTAAGTGCAAGCTACTACTTGTACCAGATAGTTAGGTCGAA
1 TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTA-GTCGAA
* * * * * * * * *
69895812 TATGTAGTACCAAGTTCAGGCTACTA-TGCGTACCCGACAACTTCAATC-ACG
1 TGTGTAGTACTAAGTGCAGGCTACTACT-TGTACCAGA-TAGTT-AGTCGA-A
* * *
69895863 TGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTATGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTA-GTCGAA
* * *
69895913 TGTGTAGTACTAAGTGCAGGCTACTA--TGCATACCCGAGA-ACTTCAATC-ACG
1 TGTGTAGTACTAAGTGCAGGCTACTACTTG--TA-CC-AGATAGTT-AGTCGA-A
* * * *
69895964 TGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATTGTTGGTC-ACA
1 TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTAGTCGA-A
* * *
69896013 TGTCTAGTACTAAGTGTAGGTTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
69896039 TGCATACCAG
Statistics
Matches: 175, Mismatches: 36, Indels: 33
0.72 0.15 0.14
Matches are distributed among these distances:
48 2 0.01
49 32 0.18
50 66 0.38
51 68 0.39
52 5 0.03
53 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTAGTCGAA
Found at i:69895887 original size:51 final size:50
Alignment explanation
Indices: 69895814--69895989 Score: 201
Period size: 51 Copynumber: 3.5 Consensus size: 50
69895804 AGGTCGAATA
* *
69895814 TGTAGTACCAAGTTCAGGCTACTATGCGTACCCGACAACTTCAATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AACTTCAATCACGTG
* *** * * * * * *
69895865 TGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTT-ATGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTTCA-ATCACGTG
*
69895915 TGTAGTACTAAGTGCAGGCTACTATGCATACCCGAGAACTTCAATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AACTTCAATCACGTG
69895966 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
69895990 CGTGCACCAG
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
49 1 0.01
50 37 0.37
51 60 0.61
52 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTTCAATCACGTG
Found at i:69895888 original size:101 final size:101
Alignment explanation
Indices: 69895757--69896046 Score: 388
Period size: 101 Copynumber: 2.9 Consensus size: 101
69895747 TAGTTTTAGG
*
69895757 TCACGTGTGTAGTACTAAGTGCA-AGCTACTACTTGTACCAGATAGTTAGGTCGAATATGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGA-CTACTACATGTACCAGATAGTTAGGTCGAATATGTAGTA
* *
69895821 CCAAGTTCAGGCTACTATGCGTACCCGACAACTTCAA
65 CCAAGTGCAGGCTACTATGCATACCCGACAACTTCAA
* * *
69895858 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTATGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCGAATATGTAGTAC
* *
69895923 TAAGTGCAGGCTACTATGCATACCCGAGAACTTCAA
66 CAAGTGCAGGCTACTATGCATACCCGACAACTTCAA
* * * * * *
69895959 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATTGTT-GGTC-ACATGTCTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCGA-ATATGTAGTA
* * *
69896022 CTAAGTGTAGGTTACTATGCATACC
65 CCAAGTGCAGGCTACTATGCATACC
69896047 AGATAGCGTC
Statistics
Matches: 170, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
100 35 0.21
101 134 0.79
102 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCGAATATGTAGTAC
CAAGTGCAGGCTACTATGCATACCCGACAACTTCAA
Found at i:69897860 original size:101 final size:97
Alignment explanation
Indices: 69897687--69897917 Score: 302
Period size: 99 Copynumber: 2.3 Consensus size: 97
69897677 CTGGTACGCA
* * *
69897687 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
69897752 GTACTACACACGTGACCTCATCATCTAATACACG
66 GTACTACACACGCGACCTCA--ATCTAATACACG
* * *
69897786 TAGTAGCCTGCACTTAGTACTACACATGTGATC-ATAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
* * **
69897850 TTAGTACTACACATGCGACCTCAGTCTGGTACACG
63 TTAGTACTACACACGCGACCTCAATCTAATACACG
*
69897885 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
69897918 TCACATAGAT
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
98 3 0.03
99 71 0.61
101 42 0.36
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (97 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCAATCTAATACACG
Found at i:69911335 original size:16 final size:15
Alignment explanation
Indices: 69911314--69911344 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
69911304 GGAATGGAGT
69911314 AAGTGAAATTATGTAA
1 AAGTGAAATT-TGTAA
69911330 AAGTGAAATTTGTAA
1 AAGTGAAATTTGTAA
69911345 TAAAACAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (15 bp):
AAGTGAAATTTGTAA
Found at i:69915236 original size:25 final size:25
Alignment explanation
Indices: 69915202--69915271 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
69915192 CTCTTTTAAT
* *
69915202 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
69915227 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
69915252 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69915272 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:69915422 original size:25 final size:25
Alignment explanation
Indices: 69915394--69915441 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
69915384 AAAACATATC
* * *
69915394 CCTAGAGGTATAATGGTTATTTTTA
1 CCTAGAGGCAAAATGGTCATTTTTA
*
69915419 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGAGGCAAAATGGTCATTTT
69915442 CACGTTATAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (25 bp):
CCTAGAGGCAAAATGGTCATTTTTA
Found at i:69917069 original size:30 final size:31
Alignment explanation
Indices: 69917024--69917130 Score: 105
Period size: 30 Copynumber: 3.6 Consensus size: 31
69917014 CATCTTGTCT
* *
69917024 GAGCTAAA-CTGAGCTC-ACTTTCAACTCAC
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
* *
69917053 GAGCTAAACCTTAGCTCAAC-TTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
* * * *
69917083 GAGTTTAGCCTCAGCTCAACTTT-AGCTCAC
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
*
69917113 GAGCTAAAGCTTAGCTCA
1 GAGCTAAACCTTAGCTCA
69917131 TTTTAGTTTA
Statistics
Matches: 60, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
29 8 0.13
30 48 0.80
31 4 0.07
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (31 bp):
GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
Found at i:69921448 original size:17 final size:18
Alignment explanation
Indices: 69921428--69921466 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
69921418 TGCACACACA
*
69921428 AATTAATTCAG-CACATT
1 AATTAATTCAGAAACATT
*
69921445 AATTAATTTAGAAACATT
1 AATTAATTCAGAAACATT
69921463 AATT
1 AATT
69921467 TTTGGCTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (18 bp):
AATTAATTCAGAAACATT
Found at i:69923843 original size:12 final size:12
Alignment explanation
Indices: 69923825--69923857 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
69923815 TTATACAAGT
69923825 TAAAAAAAATT-
1 TAAAAAAAATTG
69923836 TGAAAAAAAATTG
1 T-AAAAAAAATTG
69923849 TAAAAAAAA
1 TAAAAAAAA
69923858 AGAAGTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.05
12 18 0.90
13 1 0.05
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (12 bp):
TAAAAAAAATTG
Found at i:69926004 original size:19 final size:19
Alignment explanation
Indices: 69925960--69926004 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
69925950 AAAAAATTAA
69925960 GAAAAAAGAGAGAGAAAAG
1 GAAAAAAGAGAGAGAAAAG
* *
69925979 GCTAAAAATGAGAGAGAAAAT
1 G--AAAAAAGAGAGAGAAAAG
69926000 GAAAA
1 GAAAA
69926005 GAAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 5 0.23
21 17 0.77
ACGTcount: A:0.64, C:0.02, G:0.27, T:0.07
Consensus pattern (19 bp):
GAAAAAAGAGAGAGAAAAG
Found at i:69929348 original size:30 final size:31
Alignment explanation
Indices: 69929314--69929410 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
69929304 AGCTCACTCC
*
69929314 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
69929344 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
69929374 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
69929404 TAGCTCA
1 TAGCTCA
69929411 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:69931088 original size:11 final size:11
Alignment explanation
Indices: 69931072--69931109 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
69931062 TATACAAGTA
69931072 AAAAAAATTCG
1 AAAAAAATTCG
*
69931083 AAAAAAATTCA
1 AAAAAAATTCG
69931094 AAAAAAATTTCG
1 AAAAAAA-TTCG
69931106 AAAA
1 AAAA
69931110 GAAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 17 0.71
12 7 0.29
ACGTcount: A:0.68, C:0.08, G:0.05, T:0.18
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:69931127 original size:18 final size:18
Alignment explanation
Indices: 69931093--69931130 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
69931083 AAAAAAATTC
*
69931093 AAAAAAAATTTCGAAAAG
1 AAAAAAAATCTCGAAAAG
69931111 AAAAAAAATCT-GAAAA-
1 AAAAAAAATCTCGAAAAG
69931127 AAAA
1 AAAA
69931131 GTGTTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 5 0.26
18 10 0.53
ACGTcount: A:0.74, C:0.05, G:0.08, T:0.13
Consensus pattern (18 bp):
AAAAAAAATCTCGAAAAG
Found at i:69932052 original size:9 final size:10
Alignment explanation
Indices: 69932045--69932101 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
69932035 AAGAGAAAAC
69932045 AAAGAAAAGA
1 AAAGAAAAGA
69932055 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
69932067 AAAGAAGA-A
1 AAAGAAAAGA
69932076 AAAGAAAATGA
1 AAAGAAAA-GA
69932087 AATA-AAAAGA
1 AA-AGAAAAGA
69932097 AAAGA
1 AAAGA
69932102 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:69932068 original size:21 final size:20
Alignment explanation
Indices: 69932034--69932101 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
69932024 ACATTCTTGT
69932034 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
69932055 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
69932076 AAAGAAAATGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
69932097 AAAGA
1 AAAGA
69932102 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:69932069 original size:6 final size:5
Alignment explanation
Indices: 69932045--69932101 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
69932035 AAGAGAAAAC
*
69932045 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
69932092 AAAGA AAAGA
1 AAAGA AAAGA
69932102 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Done.