Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 235 of 328
Found at i:70393087 original size:12 final size:12
Alignment explanation
Indices: 70393070--70393113 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
70393060 TATACAAGTC
70393070 AAAAAAAATTCG
1 AAAAAAAATTCG
70393082 AAAAAAAA-TC-
1 AAAAAAAATTCG
70393092 AAAAAAAATTTCG
1 AAAAAAAA-TTCG
70393105 AAAAGAAAA
1 AAAA-AAAA
70393114 AAATCTGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 8 0.29
11 2 0.07
12 10 0.36
13 4 0.14
14 4 0.14
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:70393093 original size:22 final size:24
Alignment explanation
Indices: 70393068--70393113 Score: 78
Period size: 22 Copynumber: 2.0 Consensus size: 24
70393058 GTTATACAAG
70393068 TCAAAAAAAA-TTCGAAAA-AAAA
1 TCAAAAAAAATTTCGAAAAGAAAA
70393090 TCAAAAAAAATTTCGAAAAGAAAA
1 TCAAAAAAAATTTCGAAAAGAAAA
70393114 AAATCTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 10 0.45
23 8 0.36
24 4 0.18
ACGTcount: A:0.70, C:0.09, G:0.07, T:0.15
Consensus pattern (24 bp):
TCAAAAAAAATTTCGAAAAGAAAA
Found at i:70394061 original size:21 final size:21
Alignment explanation
Indices: 70394027--70394095 Score: 81
Period size: 20 Copynumber: 3.3 Consensus size: 21
70394017 ACATTCTTGT
70394027 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGAGAAAAGCAAA-AAAAGA
*
70394048 AAAGA-AAAAGCAAAAGAAGA
1 AAAGAGAAAAGCAAAAAAAGA
*
70394068 AAA-AGAAAAGAAATAAAAAGA
1 AAAGAGAAAAGCAA-AAAAAGA
70394089 AAAGAGA
1 AAAGAGA
70394096 GGCAAGAGGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
19 1 0.02
20 19 0.46
21 18 0.44
22 3 0.07
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.01
Consensus pattern (21 bp):
AAAGAGAAAAGCAAAAAAAGA
Found at i:70394062 original size:6 final size:5
Alignment explanation
Indices: 70394038--70394093 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
70394028 AAGAGAAAAC
*
70394038 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAAGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAAGA AA-AGA
70394084 AAAGA AAAGA
1 AAAGA AAAGA
70394094 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 11 0.25
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:70394170 original size:12 final size:12
Alignment explanation
Indices: 70394162--70394186 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70394152 TTTGAAAAGC
70394162 AAAAAGAAAATG
1 AAAAAGAAAATG
70394174 AAAAAGAAAATG
1 AAAAAGAAAATG
70394186 A
1 A
70394187 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:70394183 original size:18 final size:18
Alignment explanation
Indices: 70394156--70394211 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
70394146 AAAGCCTTTG
70394156 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
70394175 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
70394193 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
70394210 AA
1 AA
70394212 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:70394196 original size:30 final size:31
Alignment explanation
Indices: 70394162--70394243 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
70394152 TTTGAAAAGC
*
70394162 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
70394192 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
70394222 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
70394244 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:70396388 original size:30 final size:31
Alignment explanation
Indices: 70396354--70396450 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
70396344 AGCTCACTCC
*
70396354 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
70396384 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
70396414 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
70396444 TAGCTCA
1 TAGCTCA
70396451 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:70398632 original size:20 final size:20
Alignment explanation
Indices: 70398609--70398656 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
70398599 AGCTCCGTCC
70398609 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
** *
70398629 AGCT-AGTTTCAGCTCGTTTG
1 AGCTCA-ACTCAGCTCATTTG
70398649 AGCTCAAC
1 AGCTCAAC
70398657 CGAGCTTACT
Statistics
Matches: 21, Mismatches: 5, Indels: 4
0.70 0.17 0.13
Matches are distributed among these distances:
19 1 0.05
20 19 0.90
21 1 0.05
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:70398967 original size:12 final size:12
Alignment explanation
Indices: 70398950--70398982 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
70398940 TGGAAGGTAC
70398950 ATTCATGAAGAG
1 ATTCATGAAGAG
70398962 ATTCATGAAGAG
1 ATTCATGAAGAG
*
70398974 ATGCATGAA
1 ATTCATGAA
70398983 CGGGAAAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (12 bp):
ATTCATGAAGAG
Found at i:70401070 original size:27 final size:29
Alignment explanation
Indices: 70401032--70401088 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
70401022 AAGACGAAAA
70401032 GCAAAAAGAGATCA-AAAGAAAA-GAGAG
1 GCAAAAAGAGATCATAAAGAAAATGAGAG
* *
70401059 GCAAGAAA-AGATTATGAAGAAAATGAGAG
1 GCAA-AAAGAGATCATAAAGAAAATGAGAG
70401088 G
1 G
70401089 ATTTTGAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 9 0.36
28 10 0.40
29 6 0.24
ACGTcount: A:0.58, C:0.05, G:0.28, T:0.09
Consensus pattern (29 bp):
GCAAAAAGAGATCATAAAGAAAATGAGAG
Found at i:70401138 original size:42 final size:42
Alignment explanation
Indices: 70401075--70401164 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
70401065 AAAGATTATG
* * * *
70401075 AAGAAAATGAGAGGATTTTGAATGAAATCGAGAGAAGAAACA
1 AAGAAAATAAGAGAATCTTGAATGAAATCGAGAAAAGAAACA
70401117 AAGAAAATAAGAGAATCTTGAATGAAATCGAGAAAAGAAACA
1 AAGAAAATAAGAGAATCTTGAATGAAATCGAGAAAAGAAACA
70401159 AAGAAA
1 AAGAAA
70401165 TGAAAGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.58, C:0.06, G:0.22, T:0.14
Consensus pattern (42 bp):
AAGAAAATAAGAGAATCTTGAATGAAATCGAGAAAAGAAACA
Found at i:70401199 original size:18 final size:18
Alignment explanation
Indices: 70401176--70401225 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
70401166 GAAAGAAAAA
*
70401176 GAAAAAGAGATTGAGAGT
1 GAAAAAGAGAATGAGAGT
* *
70401194 GAAAAAGAAAATGAGATT
1 GAAAAAGAGAATGAGAGT
70401212 GAAAAAGAGAATGA
1 GAAAAAGAGAATGA
70401226 AAAAGAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.58, C:0.00, G:0.28, T:0.14
Consensus pattern (18 bp):
GAAAAAGAGAATGAGAGT
Found at i:70401202 original size:24 final size:24
Alignment explanation
Indices: 70401169--70401250 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
70401159 AAGAAATGAA
70401169 AGAAAAAGAAAAAGAGATTGAGAG
1 AGAAAAAGAAAAAGAGATTGAGAG
* * * *
70401193 TGAAAAAGAAAATGAGATTGAAAA
1 AGAAAAAGAAAAAGAGATTGAGAG
* * *
70401217 AGAGAATGAAAAAGAGTTTGAGAG
1 AGAAAAAGAAAAAGAGATTGAGAG
70401241 AGAAAAAGAA
1 AGAAAAAGAA
70401251 TGTGAACAAG
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.61, C:0.00, G:0.27, T:0.12
Consensus pattern (24 bp):
AGAAAAAGAAAAAGAGATTGAGAG
Found at i:70402883 original size:20 final size:20
Alignment explanation
Indices: 70402860--70402907 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
70402850 AGCTCCGTTC
70402860 AGCTCAACTCAGCTCA-TTTG
1 AGCTCAACTCAGCT-AGTTTG
***
70402880 AGCTCGTTTCAGCTAGTTTG
1 AGCTCAACTCAGCTAGTTTG
70402900 AGCTCAAC
1 AGCTCAAC
70402908 CGAGCTTACT
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTAGTTTG
Found at i:70403213 original size:12 final size:12
Alignment explanation
Indices: 70403196--70403221 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70403186 TGAAAGGTAC
70403196 ATTCATGAAGAG
1 ATTCATGAAGAG
70403208 ATTCATGAAGAG
1 ATTCATGAAGAG
70403220 AT
1 AT
70403222 GATACGATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (12 bp):
ATTCATGAAGAG
Found at i:70403389 original size:14 final size:14
Alignment explanation
Indices: 70403342--70403389 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
70403332 GTACGAATGG
*
70403342 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
70403356 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
70403370 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
70403384 ATTGGT
1 AATGGT
70403390 CTGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:70418474 original size:10 final size:10
Alignment explanation
Indices: 70418461--70418490 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
70418451 TTTTTTATAC
70418461 TCTTTTTTTT
1 TCTTTTTTTT
70418471 TCTTTTTTTT
1 TCTTTTTTTT
70418481 TCTTTTTTTT
1 TCTTTTTTTT
70418491 CTGAACCTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:70427029 original size:17 final size:17
Alignment explanation
Indices: 70427007--70427061 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 17
70426997 TTTTTCTCGT
70427007 TTTTCTTTTCTTTTTCA
1 TTTTCTTTTCTTTTTCA
70427024 TTTTCTTTTCTTTTTTCACA
1 TTTTCTTTTC-TTTTT--CA
70427044 TTTACTCTTTTCTTTTTC
1 TTT--TCTTTTCTTTTTC
70427062 TCTCAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 10 0.30
18 5 0.15
19 1 0.03
20 5 0.15
21 5 0.15
22 7 0.21
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTCTTTTCTTTTTCA
Found at i:70429082 original size:376 final size:376
Alignment explanation
Indices: 70428389--70429141 Score: 1470
Period size: 376 Copynumber: 2.0 Consensus size: 376
70428379 CAGGAATGAT
70428389 TCAACACTAAAAAGTGTCACCCCGATTCCTATATGGTTAAGGTGAAAAATATGGATAGATGGATA
1 TCAACACTAAAAAGTGTCACCCCGATTCCTATATGGTTAAGGTGAAAAATATGGATAGATGGATA
*
70428454 GGTGAACACCACACCAAAGCTGGTGATAAGTTCAAACAAGATCGGTAGATGCCACTAGCACAAAC
66 GGTGAACACCACACCAAAGCTGGTGATAAGTTCAAACAAGATCGGTAGACGCCACTAGCACAAAC
70428519 TAGATAAGTCTTCGAAACTTGTATGAGATATGAGAGGTAGCAACCTCACAAGAACAATGTTCATT
131 TAGATAAGTCTTCGAAACTTGTATGAGATATGAGAGGTAGCAACCTCACAAGAACAATGTTCATT
* *
70428584 AACAAATTTGGCAAAAGTCCTTTTACAATGAAATCAACAAACTATTTAAAGGCAAACATGTAGTA
196 AACAAATTTGGAAAAAGTCCTTTTACAAGGAAATCAACAAACTATTTAAAGGCAAACATGTAGTA
*
70428649 ACCGAATGGACAAACTAGCTAGCTTAAAGGCTAAGCAAATTCCGTCATGAGCTAGCTAGAATATT
261 ACCGAATGGACAAACTAGCTAGCTTAAAGGCTAAGCAAATTCCGTCATGAACTAGCTAGAATATT
70428714 CTAGAATGATCACTTTAATTGCCTTGTCTTGATTCGGCTGATAGGAAGGTG
326 CTAGAATGATCACTTTAATTGCCTTGTCTTGATTCGGCTGATAGGAAGGTG
70428765 TCAACACTAAAAAGTGTCACCCCGATTCCTATATGGTTAAGGTGAAAAATATGGATAGATGGATA
1 TCAACACTAAAAAGTGTCACCCCGATTCCTATATGGTTAAGGTGAAAAATATGGATAGATGGATA
70428830 GGTGAACACCACACCAAAGCTGGTGATAAGTTCAAACAAGATCGGTAGACGCCACTAGCACAAAC
66 GGTGAACACCACACCAAAGCTGGTGATAAGTTCAAACAAGATCGGTAGACGCCACTAGCACAAAC
70428895 TAGATAAGTCTTCGAAACTTGTATGAGATATGAGAGGTAGCAACCTCACAAGAACAATGTTCATT
131 TAGATAAGTCTTCGAAACTTGTATGAGATATGAGAGGTAGCAACCTCACAAGAACAATGTTCATT
70428960 AACAAATTTGGAAAAAGTCCTTTTACAAGGAAATCAACAAACTATTTAAAGGCAAACATGTAGTA
196 AACAAATTTGGAAAAAGTCCTTTTACAAGGAAATCAACAAACTATTTAAAGGCAAACATGTAGTA
70429025 ACCGAATGGACAAACTAGCTAGCTTAAAGGCTAAGCAAATTCCGTCATGAACTAGCTAGAATATT
261 ACCGAATGGACAAACTAGCTAGCTTAAAGGCTAAGCAAATTCCGTCATGAACTAGCTAGAATATT
70429090 CTAGAATGATCACTTTAATTGCCTTGTCTTGATTCGGCTGATAGGAAGGTG
326 CTAGAATGATCACTTTAATTGCCTTGTCTTGATTCGGCTGATAGGAAGGTG
70429141 T
1 T
70429142 TTGGACAGGT
Statistics
Matches: 373, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
376 373 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (376 bp):
TCAACACTAAAAAGTGTCACCCCGATTCCTATATGGTTAAGGTGAAAAATATGGATAGATGGATA
GGTGAACACCACACCAAAGCTGGTGATAAGTTCAAACAAGATCGGTAGACGCCACTAGCACAAAC
TAGATAAGTCTTCGAAACTTGTATGAGATATGAGAGGTAGCAACCTCACAAGAACAATGTTCATT
AACAAATTTGGAAAAAGTCCTTTTACAAGGAAATCAACAAACTATTTAAAGGCAAACATGTAGTA
ACCGAATGGACAAACTAGCTAGCTTAAAGGCTAAGCAAATTCCGTCATGAACTAGCTAGAATATT
CTAGAATGATCACTTTAATTGCCTTGTCTTGATTCGGCTGATAGGAAGGTG
Found at i:70430771 original size:20 final size:21
Alignment explanation
Indices: 70430748--70430809 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
70430738 CAGCTCCAAC
70430748 CAGCTCATTCGAGCTCG-TTT
1 CAGCTCATTCGAGCTCGATTT
* * *
70430768 CAGCTCGTTTGAGCTTGATTT
1 CAGCTCATTCGAGCTCGATTT
*
70430789 TAGCTCATTTC-AGCTC-ATTT
1 CAGCTCA-TTCGAGCTCGATTT
70430809 C
1 C
70430810 TTTTCCATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 18 0.56
21 12 0.38
22 2 0.06
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
CAGCTCATTCGAGCTCGATTT
Found at i:70432372 original size:12 final size:13
Alignment explanation
Indices: 70432349--70432378 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
70432339 AATTGAACTT
70432349 TTTTTTATTTTTA
1 TTTTTTATTTTTA
70432362 TTTTTTA-TTTTA
1 TTTTTTATTTTTA
70432374 TTTTT
1 TTTTT
70432379 CAGCTTTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:70434030 original size:10 final size:10
Alignment explanation
Indices: 70434015--70434039 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70434005 AAAAATATAT
70434015 TTTTTTTCAA
1 TTTTTTTCAA
70434025 TTTTTTTCAA
1 TTTTTTTCAA
70434035 TTTTT
1 TTTTT
70434040 CTTTTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTTCAA
Found at i:70440476 original size:49 final size:50
Alignment explanation
Indices: 70440399--70440577 Score: 211
Period size: 49 Copynumber: 3.6 Consensus size: 50
70440389 GCTATTGTGA
* *
70440399 GGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATAATT-
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTC
* * * *
70440448 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCT-GATAACTTC
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATAA-TTC
* * ** *
70440499 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-TCAGATGGTTG
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATTC
70440549 GGTCACGTGTGTAGTACTAAGTGCAGGCT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCT
70440578 TGATACGATC
Statistics
Matches: 109, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
49 39 0.36
50 34 0.31
51 36 0.33
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (50 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTC
Found at i:70442664 original size:49 final size:50
Alignment explanation
Indices: 70442491--70442669 Score: 198
Period size: 50 Copynumber: 3.6 Consensus size: 50
70442481 CTAATAGTCA
* * * *
70442491 TAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTACGCGTACCAGATAA-TTAGGTCACGTGTGTAGTAC
* ** ** **
70442542 AAAGTGCAGGCTACTACATGTATTAGATGGTTAGGTCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACGTGTGTAGTAC
* * * *
70442592 TAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCATGTGTAGTAC
1 TAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACGTGTGTAGTAC
*
70442641 TAAGTGCAGGCTACTATGCGTACCAGATA
1 TAAGTGCAGGCTACTACGCGTACCAGATA
70442670 GCTTCGGCTA
Statistics
Matches: 105, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
49 41 0.39
50 43 0.41
51 21 0.20
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (50 bp):
TAAGTGCAGGCTACTACGCGTACCAGATAATTAGGTCACGTGTGTAGTAC
Found at i:70446386 original size:698 final size:698
Alignment explanation
Indices: 70445050--70446450 Score: 2793
Period size: 698 Copynumber: 2.0 Consensus size: 698
70445040 TAGCATGAAT
70445050 GGCCAACTTTAATACAAGGTGCACTTCCCATGGATGGCCTAGGAGCATGAATCATGATTAATGCT
1 GGCCAACTTTAATACAAGGTGCACTTCCCATGGATGGCCTAGGAGCATGAATCATGATTAATGCT
70445115 AGAAGTGCTGCTAGTTGGTGTTTCCCAAGTGACCATTCGGCCAAGGGGTGGCTGAACATTCAATT
66 AGAAGTGCTGCTAGTTGGTGTTTCCCAAGTGACCATTCGGCCAAGGGGTGGCTGAACATTCAATT
70445180 TCCCAAGCTGGAAAATTAATTTCCCAAAGCAAAGTGCATGTGTAACACTCCTAACCCGTAACCAT
131 TCCCAAGCTGGAAAATTAATTTCCCAAAGCAAAGTGCATGTGTAACACTCCTAACCCGTAACCAT
70445245 CACCGGAATAGGTTAAGAGGCATTATTGGACTCACAACCCAAATTCGAACAATAACATAACAAAA
196 CACCGGAATAGGTTAAGAGGCATTATTGGACTCACAACCCAAATTCGAACAATAACATAACAAAA
70445310 ATCTTCTCAATACAACAAAATATAGATCATTCATATTTAACACAAACTTTAAACAATCATACAAG
261 ATCTTCTCAATACAACAAAATATAGATCATTCATATTTAACACAAACTTTAAACAATCATACAAG
70445375 GTCTAAATCACACATTCAAGACTAATTCAATAACATAAGGAAGTTTCAGAACTTAGAAAAAATTT
326 GTCTAAATCACACATTCAAGACTAATTCAATAACATAAGGAAGTTTCAGAACTTAGAAAAAATTT
*
70445440 CAACTTTTAAAAGGTCACACGCCCGTGTGAACAGGCCGTGTGAGGAAAAGCCCATGTGTCTAAGC
391 CAACTTTTAAAAGGTCACACGCCCGTGTAAACAGGCCGTGTGAGGAAAAGCCCATGTGTCTAAGC
70445505 CATGGCAAAACAGGGCATAACTACTGACTTGCCCACACGGCTACAAGACATGCCTATGTGCCTTG
456 CATGGCAAAACAGGGCATAACTACTGACTTGCCCACACGGCTACAAGACATGCCTATGTGCCTTG
70445570 GTCGTGGTCAAGTCTGACTTGGGCCACACGACTAGCCACACACCTGTGTGCTTTGGCTATGTTCA
521 GTCGTGGTCAAGTCTGACTTGGGCCACACGACTAGCCACACACCTGTGTGCTTTGGCTATGTTCA
70445635 GGCCTGACTTACAATTGTAGGGTACCGCAGGGGACACACGACTGTGCAACATAGCCGTGTGTATT
586 GGCCTGACTTACAATTGTAGGGTACCGCAGGGGACACACGACTGTGCAACATAGCCGTGTGTATT
70445700 ACACGGCTGAGACACATGCCCGTGTCTCTACCCGTGTGGACAAAAATA
651 ACACGGCTGAGACACATGCCCGTGTCTCTACCCGTGTGGACAAAAATA
70445748 GGCCAACTTTAATACAAGGTGCACTTCCCATGGATGGCCTAGGAGCATGAATCATGATTAATGCT
1 GGCCAACTTTAATACAAGGTGCACTTCCCATGGATGGCCTAGGAGCATGAATCATGATTAATGCT
70445813 AGAAGTGCTGCTAGTTGGTGTTTCCCAAGTGACCATTCGGCCAAGGGGTGGCTGAACATTCAATT
66 AGAAGTGCTGCTAGTTGGTGTTTCCCAAGTGACCATTCGGCCAAGGGGTGGCTGAACATTCAATT
70445878 TCCCAAGCTGGAAAATTAATTTCCCAAAGCAAAGTGCATGTGTAACACTCCTAACCCGTAACCAT
131 TCCCAAGCTGGAAAATTAATTTCCCAAAGCAAAGTGCATGTGTAACACTCCTAACCCGTAACCAT
70445943 CACCGGAATAGGTTAAGAGGCATTATTGGACTCACAACCCAAATTCGAACAATAACATAACAAAA
196 CACCGGAATAGGTTAAGAGGCATTATTGGACTCACAACCCAAATTCGAACAATAACATAACAAAA
70446008 ATCTTCTCAATACAACAAAATATAGATCATTCATATTTAACACAAACTTTAAACAATCATACAAG
261 ATCTTCTCAATACAACAAAATATAGATCATTCATATTTAACACAAACTTTAAACAATCATACAAG
70446073 GTCTAAATCACACATTCAAGACTAATTCAATAACATAAGGAAGTTTCAGAACTTAGAAAAAATTT
326 GTCTAAATCACACATTCAAGACTAATTCAATAACATAAGGAAGTTTCAGAACTTAGAAAAAATTT
70446138 CAACTTTTAAAAGGTCACACGCCCGTGTAAACAGGCCGTGTGAGGAAAAGCCCATGTGTCTAAGC
391 CAACTTTTAAAAGGTCACACGCCCGTGTAAACAGGCCGTGTGAGGAAAAGCCCATGTGTCTAAGC
70446203 CATGGCAAAACAGGGCATAACTACTGACTTGCCCACACGGCTACAAGACATGCCTATGTGCCTTG
456 CATGGCAAAACAGGGCATAACTACTGACTTGCCCACACGGCTACAAGACATGCCTATGTGCCTTG
70446268 GTCGTGGTCAAGTCTGACTTGGGCCACACGACTAGCCACACACCTGTGTGCTTTGGCTATGTTCA
521 GTCGTGGTCAAGTCTGACTTGGGCCACACGACTAGCCACACACCTGTGTGCTTTGGCTATGTTCA
70446333 GGCCTGACTTACAATTGTAGGGTACCGCAGGGGACACACGACTGTGCAACATAGCCGTGTGTATT
586 GGCCTGACTTACAATTGTAGGGTACCGCAGGGGACACACGACTGTGCAACATAGCCGTGTGTATT
70446398 ACACGGCTGAGACACATGCCCGTGTCTCTACCCGTGTGGACAAAAATA
651 ACACGGCTGAGACACATGCCCGTGTCTCTACCCGTGTGGACAAAAATA
70446446 GGCCA
1 GGCCA
70446451 TTTGAATAAC
Statistics
Matches: 702, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
698 702 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (698 bp):
GGCCAACTTTAATACAAGGTGCACTTCCCATGGATGGCCTAGGAGCATGAATCATGATTAATGCT
AGAAGTGCTGCTAGTTGGTGTTTCCCAAGTGACCATTCGGCCAAGGGGTGGCTGAACATTCAATT
TCCCAAGCTGGAAAATTAATTTCCCAAAGCAAAGTGCATGTGTAACACTCCTAACCCGTAACCAT
CACCGGAATAGGTTAAGAGGCATTATTGGACTCACAACCCAAATTCGAACAATAACATAACAAAA
ATCTTCTCAATACAACAAAATATAGATCATTCATATTTAACACAAACTTTAAACAATCATACAAG
GTCTAAATCACACATTCAAGACTAATTCAATAACATAAGGAAGTTTCAGAACTTAGAAAAAATTT
CAACTTTTAAAAGGTCACACGCCCGTGTAAACAGGCCGTGTGAGGAAAAGCCCATGTGTCTAAGC
CATGGCAAAACAGGGCATAACTACTGACTTGCCCACACGGCTACAAGACATGCCTATGTGCCTTG
GTCGTGGTCAAGTCTGACTTGGGCCACACGACTAGCCACACACCTGTGTGCTTTGGCTATGTTCA
GGCCTGACTTACAATTGTAGGGTACCGCAGGGGACACACGACTGTGCAACATAGCCGTGTGTATT
ACACGGCTGAGACACATGCCCGTGTCTCTACCCGTGTGGACAAAAATA
Found at i:70450171 original size:13 final size:13
Alignment explanation
Indices: 70450153--70450195 Score: 79
Period size: 13 Copynumber: 3.4 Consensus size: 13
70450143 ATACAAGTTA
70450153 AAAAAATTCAAAT
1 AAAAAATTCAAAT
70450166 AAAAAATTCAAAT
1 AAAAAATTCAAAT
70450179 AAAAAATTCAAA-
1 AAAAAATTCAAAT
70450191 AAAAA
1 AAAAA
70450196 TAAAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 5 0.17
13 25 0.83
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (13 bp):
AAAAAATTCAAAT
Found at i:70454439 original size:29 final size:29
Alignment explanation
Indices: 70454373--70454429 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
70454363 GATTCAAAGA
*
70454373 TGGGTTTATGGATATGAAGTTTATGTAGT
1 TGGGTTTATGGATATAAAGTTTATGTAGT
*
70454402 TGGGTTTATGGATATAAAGTTTTTGTAG
1 TGGGTTTATGGATATAAAGTTTATGTAG
70454430 GTTTGGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.46
Consensus pattern (29 bp):
TGGGTTTATGGATATAAAGTTTATGTAGT
Found at i:70456070 original size:30 final size:30
Alignment explanation
Indices: 70455985--70456081 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
70455975 TAAACTAAAA
* * *
70455985 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
* * * * * *
70456015 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
70456045 TGAGCTAAGGTTTAGCTCATGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
70456074 ATGAGCTA
1 -TGAGCTA
70456082 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCATGAGCTGAAGT
Found at i:70459394 original size:30 final size:30
Alignment explanation
Indices: 70459360--70459457 Score: 81
Period size: 30 Copynumber: 3.3 Consensus size: 30
70459350 AGCTCACTCC
*
70459360 TAGCTCATATTCAGCTCATGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
** * * * * *
70459390 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * *
70459420 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
70459450 TAGCTCAT
1 TAGCTCAT
70459458 TTTAGTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:70461133 original size:30 final size:28
Alignment explanation
Indices: 70461080--70461135 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
70461070 TTCTTCCACG
* *
70461080 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
70461108 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
70461136 TTTTTCGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:70462202 original size:12 final size:11
Alignment explanation
Indices: 70462178--70462218 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
70462168 CAGATTTTGT
70462178 TTTTTTTTAGAA
1 TTTTTTTT-GAA
70462190 TTTTTGTTTGAA
1 TTTTT-TTTGAA
70462202 TTTTTTTTG--
1 TTTTTTTTGAA
70462211 TTTTTTTT
1 TTTTTTTT
70462219 CGTTTTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 8 0.29
11 4 0.14
12 13 0.46
13 3 0.11
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:70462216 original size:9 final size:9
Alignment explanation
Indices: 70462202--70462237 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
70462192 TTTGTTTGAA
70462202 TTTTTTTTG
1 TTTTTTTTG
70462211 TTTTTTTTCG
1 TTTTTTTT-G
*
70462221 TTTTTTTCG
1 TTTTTTTTG
70462230 TTTTTTTT
1 TTTTTTTT
70462238 AAACTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.86
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:70462475 original size:15 final size:15
Alignment explanation
Indices: 70462455--70462500 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
70462445 TCAAAGATGG
70462455 GTTTATGGATATGAA
1 GTTTATGGATATGAA
*
70462470 GTTTAT-G-TA-GAG
1 GTTTATGGATATGAA
*
70462482 GTTTATGGATATAAA
1 GTTTATGGATATGAA
70462497 GTTT
1 GTTT
70462501 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
12 8 0.32
13 3 0.12
14 3 0.12
15 11 0.44
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.43
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:70462484 original size:27 final size:27
Alignment explanation
Indices: 70462454--70462506 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
70462444 TTCAAAGATG
*
70462454 GGTTTATGGATATGAAGTTTATGTAGA
1 GGTTTATGGATATAAAGTTTATGTAGA
*
70462481 GGTTTATGGATATAAAGTTTTTGTAG
1 GGTTTATGGATATAAAGTTTATGTAG
70462507 GTTTGGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.43
Consensus pattern (27 bp):
GGTTTATGGATATAAAGTTTATGTAGA
Found at i:70465107 original size:19 final size:19
Alignment explanation
Indices: 70465083--70465122 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70465073 AGCTCCCATG
70465083 TAGCTCCAAACCAGCTCAT
1 TAGCTCCAAACCAGCTCAT
***
70465102 TAGCTCGGGACCAGCTCAT
1 TAGCTCCAAACCAGCTCAT
70465121 TA
1 TA
70465123 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCAAACCAGCTCAT
Found at i:70466668 original size:33 final size:34
Alignment explanation
Indices: 70466620--70466684 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
70466610 TCATGTAGTG
70466620 AAAAAAATTTAAAAAAAATTCATGTATTGAGATT
1 AAAAAAATTTAAAAAAAATTCATGTATTGAGATT
* *
70466654 AAAAAAA-TTCAAAAAAATTCATGTGTTGAGA
1 AAAAAAATTTAAAAAAAATTCATGTATTGAGA
70466685 ATTTTTGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 22 0.76
34 7 0.24
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.29
Consensus pattern (34 bp):
AAAAAAATTTAAAAAAAATTCATGTATTGAGATT
Found at i:70467625 original size:6 final size:6
Alignment explanation
Indices: 70467614--70467675 Score: 61
Period size: 6 Copynumber: 10.3 Consensus size: 6
70467604 AAGAGAAAAG
* ** * * *
70467614 AAAGAA AAAGAA AACGAA AGTGAA AAAGAA ATAGAG AAAGAA AAAGAG
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
*
70467662 AATGAA AAAGAA AA
1 AAAGAA AAAGAA AA
70467676 TGTGATACGA
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.73, C:0.02, G:0.21, T:0.05
Consensus pattern (6 bp):
AAAGAA
Found at i:70467633 original size:20 final size:19
Alignment explanation
Indices: 70467590--70467660 Score: 60
Period size: 20 Copynumber: 3.8 Consensus size: 19
70467580 TTCAAGTTGT
* *
70467590 AAAGAAATAAAAAGAAGAG
1 AAAGAAAGAAAAAGAAAAG
70467609 AAAAGAAAGAAAAAGAAAACG
1 -AAAGAAAGAAAAAGAAAA-G
*
70467630 AAAG--TGAAAAAGAAATAG
1 AAAGAAAGAAAAAGAAA-AG
70467648 --AGAAAGAAAAAGA
1 AAAGAAAGAAAAAGA
70467661 GAATGAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 2 0.05
18 19 0.44
19 1 0.02
20 20 0.47
21 1 0.02
ACGTcount: A:0.73, C:0.01, G:0.21, T:0.04
Consensus pattern (19 bp):
AAAGAAAGAAAAAGAAAAG
Found at i:70467677 original size:12 final size:11
Alignment explanation
Indices: 70467598--70467675 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
70467588 GTAAAGAAAT
*
70467598 AAAAAGAAGAG
1 AAAAAGAAAAG
70467609 -AAAAG-AAAG
1 AAAAAGAAAAG
70467618 AAAAAGAAAACG
1 AAAAAGAAAA-G
**
70467630 AAAGTGAAAAAG
1 AAAAAG-AAAAG
*
70467642 AAATAGAGAAAG
1 AAAAAGA-AAAG
*
70467654 AAAAAGAGAATG
1 AAAAAGA-AAAG
70467666 AAAAAGAAAA
1 AAAAAGAAAA
70467676 TGTGATACGA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
9 3 0.06
10 10 0.19
11 6 0.11
12 31 0.57
13 4 0.07
ACGTcount: A:0.73, C:0.01, G:0.22, T:0.04
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:70475504 original size:10 final size:9
Alignment explanation
Indices: 70475489--70475532 Score: 63
Period size: 10 Copynumber: 4.8 Consensus size: 9
70475479 TAAATCACTT
70475489 TTTTTTTCGA
1 TTTTTTT-GA
70475499 TTTTTTT-A
1 TTTTTTTGA
70475507 TTTTTTTGA
1 TTTTTTTGA
70475516 TTTTTTTTGA
1 -TTTTTTTGA
70475526 TTTTTTT
1 TTTTTTT
70475533 TAACTTGTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 16 0.50
ACGTcount: A:0.09, C:0.02, G:0.07, T:0.82
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:70475512 original size:17 final size:17
Alignment explanation
Indices: 70475490--70475522 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70475480 AAATCACTTT
70475490 TTTTTTCGATTTTTTTA
1 TTTTTTCGATTTTTTTA
*
70475507 TTTTTTTGATTTTTTT
1 TTTTTTCGATTTTTTT
70475523 TGATTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.03, G:0.06, T:0.82
Consensus pattern (17 bp):
TTTTTTCGATTTTTTTA
Found at i:70475929 original size:14 final size:14
Alignment explanation
Indices: 70475882--70475929 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
70475872 TAACAAATGG
*
70475882 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
70475896 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
70475910 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
70475924 ATTGGT
1 AATGGT
70475930 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:70477157 original size:10 final size:10
Alignment explanation
Indices: 70477142--70477168 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
70477132 TACTCCTTCA
70477142 AGCTCAAATC
1 AGCTCAAATC
70477152 AGCTCAAATC
1 AGCTCAAATC
70477162 AGCTCAA
1 AGCTCAA
70477169 CTTCAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:70481604 original size:29 final size:28
Alignment explanation
Indices: 70481540--70481608 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
70481530 GCATGGACGG
* * *
70481540 CACATTAATTGAGCTGCTGGTGCATGGAA
1 CACATTAA-AGAGCTGCTGATGCATAGAA
70481569 CAGCATTAAAGAGCTGCTGATGCATAGAA
1 CA-CATTAAAGAGCTGCTGATGCATAGAA
*
70481598 TGACATTAAAG
1 -CACATTAAAG
70481609 GAGTTGTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 27 0.79
30 7 0.21
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.25
Consensus pattern (28 bp):
CACATTAAAGAGCTGCTGATGCATAGAA
Found at i:70485312 original size:19 final size:20
Alignment explanation
Indices: 70485280--70485320 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
70485270 GAATGAAATC
70485280 GAGAGAAGAAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
70485300 GAGAGAA-AAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
70485319 GA
1 GA
70485321 AAATGAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (20 bp):
GAGAGAAGAAACAAAGAAAA
Found at i:70485364 original size:42 final size:40
Alignment explanation
Indices: 70485311--70485388 Score: 93
Period size: 42 Copynumber: 1.9 Consensus size: 40
70485301 AGAGAAAAAC
* ** *
70485311 AAAGAAAAGAAAATGAGATTGAGATTGAAAAAGAGAACGA
1 AAAGAAAAGAAAATGAAAAAGAAATTGAAAAAGAGAACGA
*
70485351 AAAGAAATTAGAAAGTGAAAAAGAAATTGAAAAAGAGA
1 AAAGAAA--AGAAAATGAAAAAGAAATTGAAAAAGAGA
70485389 TTAAAGAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 7 0.23
42 24 0.77
ACGTcount: A:0.63, C:0.01, G:0.23, T:0.13
Consensus pattern (40 bp):
AAAGAAAAGAAAATGAAAAAGAAATTGAAAAAGAGAACGA
Found at i:70487654 original size:20 final size:21
Alignment explanation
Indices: 70487629--70487674 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
70487619 AGTTCCCATC
*
70487629 AGCTCACTTGAGCTCG-TTTT
1 AGCTCACTTGAGCTCGAATTT
*
70487649 AGCTCATTTGAGCTCGAATTT
1 AGCTCACTTGAGCTCGAATTT
70487670 AGCTC
1 AGCTC
70487675 GTTTCAGCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (21 bp):
AGCTCACTTGAGCTCGAATTT
Found at i:70487927 original size:13 final size:13
Alignment explanation
Indices: 70487909--70487933 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70487899 AATAGTTGTG
70487909 TGTTATTTAATTA
1 TGTTATTTAATTA
70487922 TGTTATTTAATT
1 TGTTATTTAATT
70487934 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:70488906 original size:19 final size:20
Alignment explanation
Indices: 70488882--70488927 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
70488872 AGTTCCCATC
70488882 AGCTCGCTGGAGCTCG-TTT
1 AGCTCGCTGGAGCTCGATTT
* *
70488901 AGCTCGTTTGAGCTCGAATTT
1 AGCTCGCTGGAGCTCG-ATTT
70488922 AGCTCG
1 AGCTCG
70488928 TTTCAGCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 14 0.61
21 9 0.39
ACGTcount: A:0.15, C:0.24, G:0.28, T:0.33
Consensus pattern (20 bp):
AGCTCGCTGGAGCTCGATTT
Found at i:70488924 original size:21 final size:19
Alignment explanation
Indices: 70488891--70488936 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 19
70488881 CAGCTCGCTG
70488891 GAGCTCGTTTAGCTCGTTT
1 GAGCTCGTTTAGCTCGTTT
70488910 GAGCTCGAATTTAGCTCGTTT
1 GAGCTCG--TTTAGCTCGTTT
*
70488931 CAGCTC
1 GAGCTC
70488937 ATTCCTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.29
21 17 0.71
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (19 bp):
GAGCTCGTTTAGCTCGTTT
Found at i:70488927 original size:11 final size:9
Alignment explanation
Indices: 70488892--70488936 Score: 54
Period size: 9 Copynumber: 4.6 Consensus size: 9
70488882 AGCTCGCTGG
70488892 AGCTCGTTT
1 AGCTCGTTT
70488901 AGCTCGTTT
1 AGCTCGTTT
70488910 GAGCTCGAATTT
1 -AGCTCG--TTT
70488922 AGCTCGTTT
1 AGCTCGTTT
70488931 CAGCTC
1 -AGCTC
70488937 ATTCCTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
9 12 0.38
10 11 0.34
11 6 0.19
12 3 0.09
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (9 bp):
AGCTCGTTT
Found at i:70489181 original size:13 final size:13
Alignment explanation
Indices: 70489163--70489187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70489153 AATAGTTGTG
70489163 TGTTATTTAATTA
1 TGTTATTTAATTA
70489176 TGTTATTTAATT
1 TGTTATTTAATT
70489188 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:70492341 original size:13 final size:13
Alignment explanation
Indices: 70492323--70492347 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70492313 GTATTGATCA
70492323 TGTGTTCACACCT
1 TGTGTTCACACCT
70492336 TGTGTTCACACC
1 TGTGTTCACACC
70492348 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:70493512 original size:30 final size:32
Alignment explanation
Indices: 70493452--70493516 Score: 82
Period size: 30 Copynumber: 2.1 Consensus size: 32
70493442 GATCAATATC
*
70493452 TTTTCTTTCTTCATACTCACTCTCTTTTTCAA
1 TTTTCTTTCTTCATACTCACTCTCTATTTCAA
*
70493484 TTTTCTTT-TTC-TTCTCACAT-TCTATTTCAA
1 TTTTCTTTCTTCATACTCAC-TCTCTATTTCAA
70493514 TTT
1 TTT
70493517 CATTTTTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 18 0.60
31 4 0.13
32 8 0.27
ACGTcount: A:0.15, C:0.25, G:0.00, T:0.60
Consensus pattern (32 bp):
TTTTCTTTCTTCATACTCACTCTCTATTTCAA
Found at i:70496175 original size:18 final size:19
Alignment explanation
Indices: 70496154--70496193 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
70496144 TTTTTTTTAA
*
70496154 TTTCGTATTTCTTT-TTTT
1 TTTCCTATTTCTTTGTTTT
*
70496172 TTTCCTCTTTCTTTGTTTT
1 TTTCCTATTTCTTTGTTTT
70496191 TTT
1 TTT
70496194 TGTTAATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (19 bp):
TTTCCTATTTCTTTGTTTT
Found at i:70496278 original size:17 final size:17
Alignment explanation
Indices: 70496252--70496291 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
70496242 ACAACTTGAA
70496252 TTTTTTTA-TTTCAATT
1 TTTTTTTATTTTCAATT
70496268 TTTTTTATATTTTCAATT
1 TTTTTT-TATTTTCAATT
70496286 TTTTTT
1 TTTTTT
70496292 CACAAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 6 0.27
17 2 0.09
18 14 0.64
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTTATTTTCAATT
Found at i:70497915 original size:46 final size:46
Alignment explanation
Indices: 70497853--70498076 Score: 206
Period size: 46 Copynumber: 4.8 Consensus size: 46
70497843 GATATTTGGG
70497853 CATCCAAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAA
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAA
* * *
70497899 CATCTAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAA
* * * * *
70497945 CGTCCGAACTCGTTGAGTTGAGTCCAAG-T---TTGTGAGATG-TAA
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTAACTTATG-GATGCGAA
* * *
70497987 CTAGGTATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 C-----ATCCAAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAA
** * * * *
70498038 CGGCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTAACTTATGG
70498077 GCGGGTTACA
Statistics
Matches: 149, Mismatches: 18, Indels: 22
0.79 0.10 0.12
Matches are distributed among these distances:
42 7 0.05
43 4 0.03
45 1 0.01
46 101 0.68
47 24 0.16
48 1 0.01
50 4 0.03
51 7 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
CATCCAAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAA
Found at i:70498701 original size:30 final size:30
Alignment explanation
Indices: 70498606--70498702 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
70498596 AGCTCACTCC
* *
70498606 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * * **
70498636 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
* *
70498666 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
70498696 TAGCTCA
1 TAGCTCA
70498703 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 2 0.04
30 40 0.82
31 7 0.14
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:70502455 original size:15 final size:15
Alignment explanation
Indices: 70502435--70502499 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
70502425 GTATCTTGGG
70502435 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
70502450 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
70502465 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
*
70502480 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
70502494 TTTCTT
1 TTTCTT
70502500 GTTCTCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 13 0.32
15 25 0.61
16 3 0.07
ACGTcount: A:0.11, C:0.14, G:0.14, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:70502465 original size:30 final size:30
Alignment explanation
Indices: 70502430--70502499 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
70502420 GTATCGTATC
* *
70502430 TTGGGTTTCTTTATTC-TGGATTTCTTTAT
1 TTGGGTTTCTTCAATCTTGGATTTCTTTAT
70502459 TCTGGGTTTC-TCAATCTTGGATTTCTTTAT
1 T-TGGGTTTCTTCAATCTTGGATTTCTTTAT
*
70502489 TTGGTTTTCTT
1 TTGGGTTTCTT
70502500 GTTCTCTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 12 0.34
30 23 0.66
ACGTcount: A:0.10, C:0.13, G:0.17, T:0.60
Consensus pattern (30 bp):
TTGGGTTTCTTCAATCTTGGATTTCTTTAT
Found at i:70504606 original size:30 final size:30
Alignment explanation
Indices: 70504572--70504668 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
70504562 TAAACTAAAA
70504572 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
70504602 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
70504632 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
70504662 TGAGCTA
1 TGAGCTA
70504669 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:70506026 original size:30 final size:30
Alignment explanation
Indices: 70505990--70506049 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70505980 TTCCCGAGCC
*
70505990 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
70506020 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
70506050 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:70513442 original size:30 final size:30
Alignment explanation
Indices: 70513406--70513465 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70513396 TTCCCGAGCC
*
70513406 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
70513436 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
70513466 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:70514395 original size:27 final size:27
Alignment explanation
Indices: 70514364--70514417 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
70514354 TTGCTATTTG
70514364 CATGTGAACTTACTAAGCATTTGTGCT
1 CATGTGAACTTACTAAGCATTTGTGCT
70514391 CATGTGAACTTACTAAGCATTTGTGCT
1 CATGTGAACTTACTAAGCATTTGTGCT
70514418 TACTCCCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
CATGTGAACTTACTAAGCATTTGTGCT
Found at i:70517194 original size:46 final size:46
Alignment explanation
Indices: 70517125--70517296 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
70517115 TGGGCATCTA
* * *
70517125 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCG
* * *
70517171 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCAGCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-T--GC--CCG
* * *
70517218 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGCCCG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCG
* * *
70517264 AGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
70517297 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 26 0.25
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCG
Found at i:70522620 original size:20 final size:20
Alignment explanation
Indices: 70522597--70522634 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70522587 TCAGCTCCAA
70522597 TCAGCTCACTTGAGCTTGTT
1 TCAGCTCACTTGAGCTTGTT
**
70522617 TCAGCTCGTTTGAGCTTG
1 TCAGCTCACTTGAGCTTG
70522635 ATTTTAGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.39
Consensus pattern (20 bp):
TCAGCTCACTTGAGCTTGTT
Found at i:70522645 original size:11 final size:10
Alignment explanation
Indices: 70522609--70522653 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
70522599 AGCTCACTTG
*
70522609 AGCTTGTTTC
1 AGCTTGTTTT
* *
70522619 AGCTCGTTTG
1 AGCTTGTTTT
70522629 AGCTTGATTTT
1 AGCTTG-TTTT
70522640 AGCTTGTTTT
1 AGCTTGTTTT
70522650 AGCT
1 AGCT
70522654 CATTTCTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 21 0.70
11 9 0.30
ACGTcount: A:0.13, C:0.16, G:0.22, T:0.49
Consensus pattern (10 bp):
AGCTTGTTTT
Found at i:70522648 original size:21 final size:20
Alignment explanation
Indices: 70522606--70522653 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
70522596 ATCAGCTCAC
70522606 TTGAGCTTGTTTCAGCTCGT
1 TTGAGCTTGTTTCAGCTCGT
* *
70522626 TTGAGCTTGATTTTAGCTTGT
1 TTGAGCTTG-TTTCAGCTCGT
*
70522647 TTTAGCT
1 TTGAGCT
70522654 CATTTCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.12, C:0.15, G:0.23, T:0.50
Consensus pattern (20 bp):
TTGAGCTTGTTTCAGCTCGT
Found at i:70522892 original size:15 final size:16
Alignment explanation
Indices: 70522872--70522903 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
70522862 ATTATATGAA
70522872 TAATTATA-TTTTATT
1 TAATTATATTTTTATT
70522887 TAATTATATTTTTATT
1 TAATTATATTTTTATT
70522903 T
1 T
70522904 CTTTGTAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TAATTATATTTTTATT
Found at i:70524846 original size:30 final size:30
Alignment explanation
Indices: 70524750--70524834 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
70524740 TAAACTAAAA
*
70524750 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * *
70524780 TGAGCTGAGATTAAACTCCTAAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
*
70524810 TGAGCTAAGGTTTAGCTCGTGAGCT
1 TGAGCTAAGATTTAGCTCGTGAGCT
70524835 GAATATGAGC
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:70529558 original size:21 final size:22
Alignment explanation
Indices: 70529522--70529574 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
70529512 TGAGAGTGGA
*
70529522 AAAAGAAAGTGAAAATGAAAAAG
1 AAAAGAAA-AGAAAATGAAAAAG
*
70529545 -AAAGAAAAGAAAATGAAAGAG
1 AAAAGAAAAGAAAATGAAAAAG
70529566 AAAAGAAAA
1 AAAAGAAAA
70529575 AGAGTTGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.06
Consensus pattern (22 bp):
AAAAGAAAAGAAAATGAAAAAG
Found at i:70529568 original size:27 final size:26
Alignment explanation
Indices: 70529522--70529573 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
70529512 TGAGAGTGGA
*
70529522 AAAAGAAAGTGAAAATGAAAAAGAAAG
1 AAAAGAAAATGAAAATG-AAAAGAAAG
70529549 AAAAGAAAATGAAAGA-GAAAAGAAA
1 AAAAGAAAATGAAA-ATGAAAAGAAA
70529574 AAGAGTTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 14 0.61
28 1 0.04
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (26 bp):
AAAAGAAAATGAAAATGAAAAGAAAG
Found at i:70530658 original size:21 final size:21
Alignment explanation
Indices: 70530612--70530674 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
70530602 TCAGCTCCAA
**
70530612 TCAGCTCACTTGAG-TTCATT
1 TCAGCTCGTTTGAGCTTCATT
*
70530632 TCAGCTCGTTTGAGCTTGATT
1 TCAGCTCGTTTGAGCTTCATT
* *
70530653 TTAGCTCGTTTCAGC-TCATT
1 TCAGCTCGTTTGAGCTTCATT
70530673 TC
1 TC
70530675 TTTTCCATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.43
Consensus pattern (21 bp):
TCAGCTCGTTTGAGCTTCATT
Found at i:70530907 original size:15 final size:16
Alignment explanation
Indices: 70530887--70530918 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
70530877 ATTATATGAA
70530887 TAATTATA-TTTTATT
1 TAATTATATTTTTATT
70530902 TAATTATATTTTTATT
1 TAATTATATTTTTATT
70530918 T
1 T
70530919 CTTTGTAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TAATTATATTTTTATT
Found at i:70535926 original size:18 final size:19
Alignment explanation
Indices: 70535903--70535941 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
70535893 TTTATCTCAA
*
70535903 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
70535921 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
70535940 TT
1 TT
70535942 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:70535957 original size:48 final size:49
Alignment explanation
Indices: 70535905--70536008 Score: 115
Period size: 48 Copynumber: 2.2 Consensus size: 49
70535895 TATCTCAATT
* * *
70535905 TCTTTTTCCACTCT-TTTTTC-TTGTTCACATTCTTTTTCTCTCTCAAAC
1 TCTTTTTCCACTCTCTTTTTCAAT-CTCACATTCTTTTTCACTCTCAAAC
* ** *
70535953 TCTTTTT-CATTCTCTTTTTCAATCTCATTTTCTTTTTCACTCTCAATC
1 TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
70536001 TCTTTTTC
1 TCTTTTTC
70536009 TTTTTCTTTC
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
47 5 0.11
48 40 0.87
49 1 0.02
ACGTcount: A:0.12, C:0.28, G:0.01, T:0.59
Consensus pattern (49 bp):
TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
Found at i:70535980 original size:18 final size:18
Alignment explanation
Indices: 70535959--70536008 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
70535949 AAACTCTTTT
70535959 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
70535977 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
*
70535995 TCAATCTCTTTTTC
1 TCATTCTCTTTTTC
70536009 TTTTTCTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:70535998 original size:24 final size:24
Alignment explanation
Indices: 70535934--70536015 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
70535924 CTTGTTCACA
*
70535934 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
* * * * *
70535958 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTCTCTCAATCTCTTT
*
70535982 TTCTTTTTCACTCTCAATCTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
70536006 TTCTTTTTCT
1 TTCTTTTTCT
70536016 TTCATTTCTT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.61
Consensus pattern (24 bp):
TTCTTTTTCTCTCTCAATCTCTTT
Found at i:70536067 original size:42 final size:42
Alignment explanation
Indices: 70536012--70536108 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
70536002 CTTTTTCTTT
* * * * *
70536012 TTCTTTCA-TTTCTTTGTTTCTTTTCTCGATTTTATTCAAGA
1 TTCTCTCATTTTCTTTATTTCTTCTCTCGATTTCATTCAAAA
70536053 TTCTCTCATTTTCTTTATTTCTTCTCTCGATTTCATTCAAAA
1 TTCTCTCATTTTCTTTATTTCTTCTCTCGATTTCATTCAAAA
*
70536095 TCCTCTCATTTTCT
1 TTCTCTCATTTTCT
70536109 CTCATAATCT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
41 7 0.14
42 42 0.86
ACGTcount: A:0.15, C:0.23, G:0.04, T:0.58
Consensus pattern (42 bp):
TTCTCTCATTTTCTTTATTTCTTCTCTCGATTTCATTCAAAA
Found at i:70537141 original size:15 final size:16
Alignment explanation
Indices: 70537121--70537151 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
70537111 CAACTTGAAT
70537121 TTTTTTTAATT-CGAA
1 TTTTTTTAATTACGAA
70537136 TTTTTTTAATTACGAA
1 TTTTTTTAATTACGAA
70537152 CCTATTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTTTTTAATTACGAA
Found at i:70543667 original size:19 final size:19
Alignment explanation
Indices: 70543643--70543682 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70543633 AGCTCCCATG
70543643 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
70543662 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
70543681 TA
1 TA
70543683 TCAGCTCATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:70544759 original size:14 final size:14
Alignment explanation
Indices: 70544737--70544784 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
70544727 ACCTAAACCG
*
70544737 ACCAATTTGTTCAT
1 ACCATTTTGTTCAT
*
70544751 ACCATTTTGTTCCT
1 ACCATTTTGTTCAT
* * *
70544765 ACCCTTTCGTTCTT
1 ACCATTTTGTTCAT
70544779 ACCATT
1 ACCATT
70544785 CCATTCGTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.46
Consensus pattern (14 bp):
ACCATTTTGTTCAT
Found at i:70545053 original size:15 final size:16
Alignment explanation
Indices: 70545028--70545059 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
70545018 ATGTACAAAG
70545028 AAATAAAAATATAATT
1 AAATAAAAATATAATT
70545044 AAAT-AAAATATAATT
1 AAATAAAAATATAATT
70545059 A
1 A
70545060 TTCATATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATAAAAATATAATT
Found at i:70545331 original size:20 final size:21
Alignment explanation
Indices: 70545287--70545325 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
70545277 TGAGCTGAGA
*
70545287 GAGCTAAAATCGAGCTCAAAC
1 GAGCCAAAATCGAGCTCAAAC
70545308 GAGCCAAAA-CGAGCTCAA
1 GAGCCAAAATCGAGCTCAA
70545326 GTGAGCTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.44, C:0.26, G:0.21, T:0.10
Consensus pattern (21 bp):
GAGCCAAAATCGAGCTCAAAC
Found at i:70547027 original size:24 final size:23
Alignment explanation
Indices: 70546991--70547044 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
70546981 ATTAAGACCT
*
70546991 AATTAACTAATTTAACTAACAGCA
1 AATTAAATAATTTAA-TAACAGCA
* * **
70547015 AATTAAATGATTTTATTCCAGCA
1 AATTAAATAATTTAATAACAGCA
70547038 AATTAAA
1 AATTAAA
70547045 CGTAAAAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (23 bp):
AATTAAATAATTTAATAACAGCA
Found at i:70550617 original size:22 final size:21
Alignment explanation
Indices: 70550574--70550618 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
70550564 TCATATAATT
*
70550574 ATAATTTAAAATAATAACTAA
1 ATAATTTAAAACAATAACTAA
*
70550595 ATAATTTAAAAGCAATAATTAA
1 ATAATTTAAAA-CAATAACTAA
70550617 AT
1 AT
70550619 TTAGACATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAATTTAAAACAATAACTAA
Found at i:70550817 original size:10 final size:10
Alignment explanation
Indices: 70550804--70550838 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
70550794 AAGCTCGGTT
70550804 GAGCTCAAAC
1 GAGCTCAAAC
*
70550814 GAGCTGAAAC
1 GAGCTCAAAC
*
70550824 GAGCTCAAAT
1 GAGCTCAAAC
70550834 GAGCT
1 GAGCT
70550839 GAGTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:70550847 original size:20 final size:20
Alignment explanation
Indices: 70550801--70550848 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
70550791 AGTAAGCTCG
70550801 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
70550821 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
70550841 GTTGAGCT
1 GTTGAGCT
70550849 GGACGGAGCT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:70555575 original size:15 final size:14
Alignment explanation
Indices: 70555535--70555580 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
70555525 CTCTTGCCTC
*
70555535 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
70555550 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
70555565 TCTTTTGCTTTTTCT
1 TCTTTT-CTTTTTCT
70555580 T
1 T
70555581 TTCTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 4 0.14
15 14 0.50
16 10 0.36
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.76
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:70555591 original size:15 final size:15
Alignment explanation
Indices: 70555535--70555591 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
70555525 CTCTTGCCTC
*
70555535 TCTTTTCTTTTTATT
1 TCTTTTCTTTTTTTT
*
70555550 TCATTTTC-TTTTTCT
1 TC-TTTTCTTTTTTTT
70555565 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTT-TTT
70555582 TCTTTT-TTTT
1 TCTTTTCTTTT
70555592 GTTCTCTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 4 0.11
15 14 0.40
16 9 0.26
17 8 0.23
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.79
Consensus pattern (15 bp):
TCTTTTCTTTTTTTT
Found at i:70555591 original size:21 final size:21
Alignment explanation
Indices: 70555535--70555592 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
70555525 CTCTTGCCTC
70555535 TCTTTTCTTTTTATTT-CATTT
1 TCTTTTCTTTTT-TTTGCATTT
* *
70555556 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCT-TTTTTTTGCATTT
70555577 TCTTTTCTTTTTTTTG
1 TCTTTTCTTTTTTTTG
70555593 TTCTCTTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 4 0.13
21 26 0.84
22 1 0.03
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.78
Consensus pattern (21 bp):
TCTTTTCTTTTTTTTGCATTT
Found at i:70555596 original size:12 final size:11
Alignment explanation
Indices: 70555535--70555588 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 11
70555525 CTCTTGCCTC
70555535 TCTTTTCTTTT
1 TCTTTTCTTTT
* *
70555546 T-ATTTCATTT
1 TCTTTTCTTTT
*
70555556 TC-TTT-TTCT
1 TCTTTTCTTTT
70555565 TCTTTTGCTTTT
1 TCTTTT-CTTTT
70555577 TCTTTTCTTTT
1 TCTTTTCTTTT
70555588 T
1 T
70555589 TTTGTTCTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
9 4 0.12
10 14 0.41
11 7 0.21
12 9 0.26
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.78
Consensus pattern (11 bp):
TCTTTTCTTTT
Found at i:70555600 original size:31 final size:29
Alignment explanation
Indices: 70555533--70555600 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 29
70555523 GCCTCTTGCC
70555533 TCTCTTTTCTTTTTATTTCATTTTCTTTT
1 TCTCTTTTCTTTTTATTTCATTTTCTTTT
* *
70555562 TCTTCTTTTGCTTTTTCTTTTC-TTTTTTTTGT
1 TC-TCTTTT-CTTTTT-ATTTCATTTTCTTT-T
70555594 TCTCTTT
1 TCTCTTT
70555601 ACAAGAATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 2 0.06
30 6 0.18
31 18 0.55
32 7 0.21
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (29 bp):
TCTCTTTTCTTTTTATTTCATTTTCTTTT
Found at i:70556521 original size:11 final size:11
Alignment explanation
Indices: 70556505--70556546 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
70556495 CATAAATCAC
70556505 TTTTTTTTCAA
1 TTTTTTTTCAA
*
70556516 TTTTTTTTGAA
1 TTTTTTTTCAA
70556527 -TTTTTTTCGAAA
1 TTTTTTTTC--AA
70556539 TTTTTTTT
1 TTTTTTTT
70556547 TTTGGTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 7 0.27
11 10 0.38
12 2 0.08
13 7 0.27
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.74
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:70559410 original size:10 final size:10
Alignment explanation
Indices: 70559392--70559442 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
70559382 TAAAGGAAAA
*
70559392 GAAATGAGCT
1 GAAACGAGCT
70559402 GAAACGAGCT
1 GAAACGAGCT
*
70559412 AAAATCGAGCT
1 GAAA-CGAGCT
* *
70559423 CAAACGAGCC
1 GAAACGAGCT
70559433 GAAACGAGCT
1 GAAACGAGCT
70559443 CAAGTGAGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 25 0.74
11 9 0.26
ACGTcount: A:0.41, C:0.22, G:0.25, T:0.12
Consensus pattern (10 bp):
GAAACGAGCT
Found at i:70559421 original size:21 final size:20
Alignment explanation
Indices: 70559393--70559445 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 20
70559383 AAAGGAAAAG
*
70559393 AAATGAGCTGAAACGAGCTA
1 AAATGAGCTCAAACGAGCTA
**
70559413 AAATCGAGCTCAAACGAGCCG
1 AAAT-GAGCTCAAACGAGCTA
*
70559434 AAACGAGCTCAA
1 AAATGAGCTCAA
70559446 GTGAGCTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (20 bp):
AAATGAGCTCAAACGAGCTA
Found at i:70563066 original size:30 final size:30
Alignment explanation
Indices: 70562968--70563068 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
70562958 AGTTTAAACT
*
70562968 AAAATGAGCTAAGCTTTAGCTCGTGAGCT-
1 AAAATGAGCTAAGGTTTAGCTCGTGAGCTG
* * * * * * *
70562997 AAAGTTGAGCTGAGGCTAAACTCCTAAGCTG
1 AAA-ATGAGCTAAGGTTTAGCTCGTGAGCTG
** *
70563028 AAGTTGAGCTAAGGTTTAGCTCGTGAGTTG
1 AAAATGAGCTAAGGTTTAGCTCGTGAGCTG
70563058 AAAATGAGCTA
1 AAAATGAGCTA
70563069 GGAGTGAGCA
Statistics
Matches: 52, Mismatches: 18, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
29 3 0.06
30 47 0.90
31 2 0.04
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (30 bp):
AAAATGAGCTAAGGTTTAGCTCGTGAGCTG
Found at i:70566455 original size:12 final size:12
Alignment explanation
Indices: 70566438--70566468 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
70566428 TACAAGTTTG
70566438 AAAAAAAATCCA
1 AAAAAAAATCCA
*
70566450 AAAAAAAATCGA
1 AAAAAAAATCCA
70566462 AAAAAAA
1 AAAAAAA
70566469 GTGGATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.81, C:0.10, G:0.03, T:0.06
Consensus pattern (12 bp):
AAAAAAAATCCA
Found at i:70573653 original size:67 final size:68
Alignment explanation
Indices: 70573567--70573723 Score: 289
Period size: 67 Copynumber: 2.3 Consensus size: 68
70573557 TTCACTTGGA
* *
70573567 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACAT-GGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
70573631 CGT
66 CGT
70573634 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
70573699 CGT
66 CGT
70573702 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
70573724 TATATAGTAT
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
67 52 0.60
68 35 0.40
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:70579129 original size:14 final size:14
Alignment explanation
Indices: 70579110--70579140 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
70579100 ACTTATGTAT
70579110 TTCTTTCTAAATTC
1 TTCTTTCTAAATTC
70579124 TTCTTTCTAAATTC
1 TTCTTTCTAAATTC
70579138 TTC
1 TTC
70579141 CTGGAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (14 bp):
TTCTTTCTAAATTC
Found at i:70581175 original size:71 final size:68
Alignment explanation
Indices: 70581085--70581279 Score: 266
Period size: 68 Copynumber: 2.8 Consensus size: 68
70581075 CGATTTATAT
* * * *
70581085 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTCATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGG-GATACATC-C--CGAATCACACATGCGACCTAGCTACATTTA
70581149 TCTCTCA
62 TCTCTCA
* *
70581156 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTACATTTATCTC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCGACCTAGCTACATTTATCTC
70581221 TCA
66 TCA
* **
70581224 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTAACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCGACCTAGCTAC
70581280 TATATAGTAT
Statistics
Matches: 116, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 88 0.76
70 2 0.02
71 26 0.22
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (68 bp):
CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCGACCTAGCTACATTTATCTC
TCA
Found at i:70581217 original size:68 final size:68
Alignment explanation
Indices: 70581122--70581279 Score: 289
Period size: 68 Copynumber: 2.3 Consensus size: 68
70581112 TTCACTTGGA
* *
70581122 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
70581187 CGT
66 CGT
70581190 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
70581255 CGT
66 CGT
*
70581258 ATCACACATGTAACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
70581280 TATATAGTAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:70581312 original size:68 final size:67
Alignment explanation
Indices: 70581134--70581305 Score: 240
Period size: 68 Copynumber: 2.5 Consensus size: 67
70581124 CACTCATGCG
* *
70581134 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
*
70581199 GTG
65 GTA
* *
70581202 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
70581267 GTA
65 GTA
70581270 ACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ACCTAGCTAC-ATATA-TATCTACGTAGCTC-TCTTGT
70581306 ACACATGATG
Statistics
Matches: 98, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
67 1 0.01
68 89 0.91
69 4 0.04
70 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (67 bp):
ACCTAGCTACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
TA
Found at i:70585785 original size:30 final size:30
Alignment explanation
Indices: 70585714--70585796 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
70585704 CTTTTGTTTC
* *
70585714 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
70585745 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
70585774 ATTTTCTTTTTCTTTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
70585797 TCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.12, C:0.22, G:0.01, T:0.65
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:70585896 original size:15 final size:14
Alignment explanation
Indices: 70585865--70585921 Score: 69
Period size: 16 Copynumber: 3.7 Consensus size: 14
70585855 CTCTTGCCTC
70585865 TCTTTTCTTTTTACT
1 TCTTTTCTTTTT-CT
70585880 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
70585895 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
70585912 TCTTTTCTTT
1 TCTTTTCTTT
70585922 ATTTTCTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 4 0.11
15 13 0.34
16 14 0.37
17 7 0.18
ACGTcount: A:0.04, C:0.19, G:0.02, T:0.75
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:70585931 original size:21 final size:21
Alignment explanation
Indices: 70585863--70585932 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 21
70585853 GCCTCTTGCC
70585863 TCTCTTTTCTTTTTACTTCATTT
1 TCTCTTTTC-TTTT-CTTCATTT
70585886 TCT-TTTTCTTCTT-TTGC-TTT
1 TCTCTTTTCTT-TTCTT-CATTT
*
70585906 T-TCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTTCTTCATTT
70585926 TCTCTTT
1 TCTCTTT
70585933 ACAAGAATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
19 3 0.08
20 19 0.47
21 8 0.20
22 7 0.17
23 3 0.08
ACGTcount: A:0.04, C:0.20, G:0.01, T:0.74
Consensus pattern (21 bp):
TCTCTTTTCTTTTCTTCATTT
Found at i:70587774 original size:30 final size:30
Alignment explanation
Indices: 70587740--70587836 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
70587730 TAAACTAAAA
70587740 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * *
70587770 TGAGCTGAGGC-TAAACTCCTAAGCTAAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
70587800 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
70587830 TGAGCTA
1 TGAGCTA
70587837 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 2 0.04
30 43 0.83
31 7 0.13
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:70589656 original size:13 final size:13
Alignment explanation
Indices: 70589638--70589662 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70589628 TGGTCATCAT
70589638 GGTGTGAACACAA
1 GGTGTGAACACAA
70589651 GGTGTGAACACA
1 GGTGTGAACACA
70589663 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:70590127 original size:30 final size:30
Alignment explanation
Indices: 70590093--70590189 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
70590083 TAAACTAAAA
*
70590093 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
70590123 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
70590153 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
70590183 TGAGCTA
1 TGAGCTA
70590190 GGAGTGAGCT
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 2 0.04
30 41 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:70590489 original size:10 final size:10
Alignment explanation
Indices: 70590476--70590521 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
70590466 AGCTCACTTG
70590476 AGCTCGTTTT
1 AGCTCGTTTT
*
70590486 AGCTCGTTTG
1 AGCTCGTTTT
*
70590496 AGCTCGAATTT
1 AGCTCG-TTTT
*
70590507 AGCTCGTTTC
1 AGCTCGTTTT
70590517 AGCTC
1 AGCTC
70590522 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:70590509 original size:21 final size:20
Alignment explanation
Indices: 70590473--70590521 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
70590463 ATCAGCTCAC
*
70590473 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
70590493 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
70590514 TTCAGCTC
1 TTGAGCTC
70590522 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:70590764 original size:13 final size:13
Alignment explanation
Indices: 70590746--70590770 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70590736 AAAAGTTGTG
70590746 TGTTATTTAATTA
1 TGTTATTTAATTA
70590759 TGTTATTTAATT
1 TGTTATTTAATT
70590771 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:70601362 original size:19 final size:20
Alignment explanation
Indices: 70601330--70601370 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
70601320 GAATGAAATC
70601330 GAGAGAAGAAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
70601350 GAGAGAA-AAACAAAGAAAA
1 GAGAGAAGAAACAAAGAAAA
70601369 GA
1 GA
70601371 AAATGAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (20 bp):
GAGAGAAGAAACAAAGAAAA
Found at i:70603504 original size:10 final size:10
Alignment explanation
Indices: 70603491--70603536 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
70603481 AGCTCACTTG
70603491 AGCTCGTTTT
1 AGCTCGTTTT
*
70603501 AGCTCGTTTG
1 AGCTCGTTTT
*
70603511 AGCTCGAATTT
1 AGCTCG-TTTT
*
70603522 AGCTCGTTTC
1 AGCTCGTTTT
70603532 AGCTC
1 AGCTC
70603537 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:70603524 original size:21 final size:20
Alignment explanation
Indices: 70603488--70603536 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
70603478 ATCAGCTCAC
*
70603488 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
70603508 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
70603529 TTCAGCTC
1 TTGAGCTC
70603537 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:70603779 original size:13 final size:13
Alignment explanation
Indices: 70603761--70603785 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70603751 AATAGTTGTG
70603761 TGTTATTTAATTA
1 TGTTATTTAATTA
70603774 TGTTATTTAATT
1 TGTTATTTAATT
70603786 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:70609647 original size:68 final size:68
Alignment explanation
Indices: 70609538--70609674 Score: 193
Period size: 68 Copynumber: 2.0 Consensus size: 68
70609528 AAATGCAATT
* *
70609538 AAAGGGTTAAAACACATTAAAATCGGTAGCAGAAAAACCAATTTAATTCATGTCATGCGGCTGAA
1 AAAGGGTTAAAACACATTAAAATCGGCAGCAGAAAAACCAATGTAATTCATGTCATGCGGCTGAA
70609603 CAA
66 CAA
* * *** * *
70609606 AAAGGGTTAAGACACATTAAATTCGGCAGCATTCAAACCAATGTAATTTATGTCATGCGGCTGGA
1 AAAGGGTTAAAACACATTAAAATCGGCAGCAGAAAAACCAATGTAATTCATGTCATGCGGCTGAA
70609671 CAA
66 CAA
70609674 A
1 A
70609675 TTAAATTATC
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (68 bp):
AAAGGGTTAAAACACATTAAAATCGGCAGCAGAAAAACCAATGTAATTCATGTCATGCGGCTGAA
CAA
Found at i:70611665 original size:10 final size:10
Alignment explanation
Indices: 70611650--70611693 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
70611640 CTCACTTGAA
70611650 CTCGTTTTAG
1 CTCGTTTTAG
*
70611660 CTCGTTTGAG
1 CTCGTTTTAG
*
70611670 CTCGAATTTAG
1 CTCG-TTTTAG
*
70611681 CTCGTTTCAG
1 CTCGTTTTAG
70611691 CTC
1 CTC
70611694 ATTCCTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (10 bp):
CTCGTTTTAG
Found at i:70611668 original size:20 final size:21
Alignment explanation
Indices: 70611645--70611687 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
70611635 ATCAGCTCAC
*
70611645 TTGAACTCG-TTTTAGCTCGT
1 TTGAACTCGAATTTAGCTCGT
*
70611665 TTGAGCTCGAATTTAGCTCGT
1 TTGAACTCGAATTTAGCTCGT
70611686 TT
1 TT
70611688 CAGCTCATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGAACTCGAATTTAGCTCGT
Done.