Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 237 of 328
Found at i:70834649 original size:16 final size:17
Alignment explanation
Indices: 70834630--70834662 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
70834620 AGAACCTAAT
70834630 CCTAAAAATA-AAATAA
1 CCTAAAAATAGAAATAA
70834646 CCTAAAAATAGAAATAA
1 CCTAAAAATAGAAATAA
70834663 AATAAAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.67, C:0.12, G:0.03, T:0.18
Consensus pattern (17 bp):
CCTAAAAATAGAAATAA
Found at i:70836020 original size:25 final size:26
Alignment explanation
Indices: 70835991--70836046 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
70835981 TTAATTAATA
*
70835991 TAAAATATT-AATAATTGAAT-AAAT
1 TAAAATATTAAATAATTAAATAAAAT
70836015 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATTAAATAATTAAATAAAAT
70836041 TAAAAT
1 TAAAAT
70836047 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (26 bp):
TAAAATATTAAATAATTAAATAAAAT
Found at i:70837724 original size:39 final size:40
Alignment explanation
Indices: 70837606--70837790 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
70837596 GCTACTCGTT
* *
70837606 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
** * *
70837646 TGAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
70837686 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70837725 CAAATGCCTTC-GGATCTTAGTCCGGGTATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
70837766 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70837791 CATCATTCGA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.27
40 73 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70840252 original size:29 final size:30
Alignment explanation
Indices: 70840193--70840253 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
70840183 TGCTTAAGAA
*
70840193 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACATCTAAATTTT
70840223 AATATTTACAAAAAGAGTA-AT-TAAATTTT
1 AATATTTACAAAAAGAG-ACATCTAAATTTT
70840252 AA
1 AA
70840254 AAATAATTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 9 0.31
30 19 0.66
31 1 0.03
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.36
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACATCTAAATTTT
Found at i:70841424 original size:27 final size:28
Alignment explanation
Indices: 70841387--70841526 Score: 180
Period size: 27 Copynumber: 5.1 Consensus size: 28
70841377 GCATGGCTGT
* *
70841387 CAGA-ACAGATA-TTGTGACAGAGTCAC
1 CAGATACAGATATTTGTGGCAGAGCCAC
* * *
70841413 CAGATACAGATAATTGTGGCAGGGCCAA
1 CAGATACAGATATTTGTGGCAGAGCCAC
* *
70841441 CAGAAACAGATATTTGTGGAAGAGCCAC
1 CAGATACAGATATTTGTGGCAGAGCCAC
*
70841469 CAGAT-CAGATATTTGTGGTAGAGCCAC
1 CAGATACAGATATTTGTGGCAGAGCCAC
70841496 CAGAT-CAGATATTTGTGGCAGAGCCAC
1 CAGATACAGATATTTGTGGCAGAGCCAC
70841523 CAGA
1 CAGA
70841527 ACGCTTCCTC
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.04
27 58 0.58
28 38 0.38
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (28 bp):
CAGATACAGATATTTGTGGCAGAGCCAC
Found at i:70842629 original size:17 final size:17
Alignment explanation
Indices: 70842607--70842639 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70842597 TCGGCTATGG
70842607 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
70842624 AGAAAAGAAGAGATGA
1 AGAAAAGAAAAGATGA
70842640 GAAGGGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:70849333 original size:27 final size:28
Alignment explanation
Indices: 70849296--70849408 Score: 133
Period size: 28 Copynumber: 4.1 Consensus size: 28
70849286 GCATGGCTGT
* *
70849296 CAGA-ACAGATA-TTGTGACAGAGTCAC
1 CAGATACAGATATTTGTGGCAGAGCCAC
* * *
70849322 CAGATACAGATAATTGTGGCAGGGCCAA
1 CAGATACAGATATTTGTGGCAGAGCCAC
* *
70849350 CAGAAATAGATATTTGTGGCAGAGCCAC
1 CAGATACAGATATTTGTGGCAGAGCCAC
*
70849378 CAGAT-CAGATATTTGTGGCAGAGCCCC
1 CAGATACAGATATTTGTGGCAGAGCCAC
70849405 CAGA
1 CAGA
70849409 ACGCTTCCTC
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.05
27 31 0.42
28 38 0.52
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (28 bp):
CAGATACAGATATTTGTGGCAGAGCCAC
Found at i:70850339 original size:17 final size:17
Alignment explanation
Indices: 70850317--70850349 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70850307 TCGGCTATGG
70850317 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
70850334 AGAAAAGAAGAGATGA
1 AGAAAAGAAAAGATGA
70850350 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:70862523 original size:41 final size:41
Alignment explanation
Indices: 70862466--70862548 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
70862456 CGAGCCTTGG
*
70862466 ATCTAACAGTTGTGTCTTTTGTCCCTCTCTAACTACCACTT
1 ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
* * *
70862507 ATCTAATAGCTGTGTCTTTTGTCCCTTTCTGACTACCACTT
1 ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
70862548 A
1 A
70862549 CATTTCCCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.19, C:0.28, G:0.11, T:0.42
Consensus pattern (41 bp):
ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
Found at i:70866002 original size:66 final size:64
Alignment explanation
Indices: 70865920--70866047 Score: 229
Period size: 66 Copynumber: 2.0 Consensus size: 64
70865910 GAATATGGTG
*
70865920 CATTTGGATGATTAGAGTGCAGAGTGTGCATTTTCGTGCACAACGGTATTTTTGGGCTTAATGGG
1 CATTTGGATGATTAGAGTGCAAAGTGTGCATTTTCGTGCACAACGGTA-TTTT-GGCTTAATGGG
70865985 C
64 C
70865986 CATTTGGATGATTAGAGTGCAAAGTGTGCATTTTCGTGCACAACGGTATTTTGGCTTAATGG
1 CATTTGGATGATTAGAGTGCAAAGTGTGCATTTTCGTGCACAACGGTATTTTGGCTTAATGG
70866048 CCGAAAACGG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
64 10 0.16
65 4 0.07
66 47 0.77
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.35
Consensus pattern (64 bp):
CATTTGGATGATTAGAGTGCAAAGTGTGCATTTTCGTGCACAACGGTATTTTGGCTTAATGGGC
Found at i:70866367 original size:27 final size:27
Alignment explanation
Indices: 70866326--70866378 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
70866316 CTCGGCTGCA
*
70866326 ATCTGGTGGCCTCGTCACAATATCTGT
1 ATCTGGTGACCTCGTCACAATATCTGT
*
70866353 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGACCTCGTCACAATATCTG
70866379 GCTCATCGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
ATCTGGTGACCTCGTCACAATATCTGT
Found at i:70875033 original size:39 final size:39
Alignment explanation
Indices: 70874979--70875151 Score: 283
Period size: 39 Copynumber: 4.4 Consensus size: 39
70874969 AACAAAGATG
70874979 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
70875018 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
** *
70875057 CGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
* *
70875096 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCC
1 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CC
*
70875136 CGAAGGCATTTGTGCG
1 CGAAGGCAATTGTGCG
70875152 GGTTACCATA
Statistics
Matches: 126, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 109 0.87
40 17 0.13
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
Found at i:70875167 original size:40 final size:39
Alignment explanation
Indices: 70874979--70875181 Score: 271
Period size: 39 Copynumber: 5.2 Consensus size: 39
70874969 AACAAAGATG
* *
70874979 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
* *
70875018 CGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
*
70875057 CGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
* *
70875096 CGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAG-CC
* * ** * *
70875136 CGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCC
1 CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAG-CC
70875176 CGAAGG
1 CGAAGG
70875182 TGTTTTGAAC
Statistics
Matches: 149, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 109 0.73
40 40 0.27
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
CGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCC
Found at i:70876888 original size:28 final size:27
Alignment explanation
Indices: 70876842--70876895 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
70876832 CCTCGCTGCA
70876842 ATCTAGTGACCTCGCCACATATATCTGT
1 ATCTAGTGACCTCGCCACA-ATATCTGT
* * *
70876870 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTAGTGACCTCGCCACAATATCTG
70876896 GCTCATTCGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (27 bp):
ATCTAGTGACCTCGCCACAATATCTGT
Found at i:70876911 original size:68 final size:67
Alignment explanation
Indices: 70876757--70876897 Score: 237
Period size: 67 Copynumber: 2.1 Consensus size: 67
70876747 GAGGAAGTGT
* * * *
70876757 TCTGACAGCCTCGCTGCAATCTGGTGGCCTCGCCGCATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGACCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
70876822 TA
66 TA
70876824 TCTGGCAGCCTCGCTGCAATCTAGTGACCTCGCCACATATATCTGTATCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTAGTGACCTCGCCACATATATCTGT-TCTGGTGACTTCGTCACA
70876889 ATA
65 ATA
70876892 TCTGGC
1 TCTGGC
70876898 TCATTCGCTG
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
67 42 0.61
68 27 0.39
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGACCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:70877856 original size:26 final size:26
Alignment explanation
Indices: 70877827--70877876 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
70877817 GAAAATTATT
70877827 AAAATTTATG-GAATGAATTGGATAAG
1 AAAATTTATGAG-ATGAATTGGATAAG
*
70877853 AAAATTTATGAGATGAATTTGATA
1 AAAATTTATGAGATGAATTGGATA
70877877 TTTGAAATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (26 bp):
AAAATTTATGAGATGAATTGGATAAG
Found at i:70879230 original size:13 final size:13
Alignment explanation
Indices: 70879212--70879236 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70879202 TGAATTGGCA
70879212 TGTGTGAAAGTTT
1 TGTGTGAAAGTTT
70879225 TGTGTGAAAGTT
1 TGTGTGAAAGTT
70879237 CAATCATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (13 bp):
TGTGTGAAAGTTT
Found at i:70880436 original size:42 final size:42
Alignment explanation
Indices: 70880333--70880495 Score: 177
Period size: 43 Copynumber: 3.8 Consensus size: 42
70880323 ATGTGTTCTA
* * *
70880333 GTGTAAGACCACGTCTGGGACGTTGGCATC-AACTTATGATTTAC
1 GTGTAAGACCACGTCTAGGACATTGGCATCGTA-TT-TGATTT-C
*
70880377 GTTTAAGACCACGTCTAGGACATTGGCATCGTATTTGATTTC
1 GTGTAAGACCACGTCTAGGACATTGGCATCGTATTTGATTTC
* *
70880419 GTGTAAGACC-CTGTCTAGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTAGGACATTGGCATCG-TATTTGATTTC
* * * *
70880462 ATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 GTGTAAGACCACGTCTAGGACATTGGCATCGTAT
70880496 GAGCTTTCCG
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 31 0.30
43 40 0.39
44 30 0.29
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACGTCTAGGACATTGGCATCGTATTTGATTTC
Found at i:70885463 original size:93 final size:93
Alignment explanation
Indices: 70885351--70885522 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
70885341 CGCCCATAAG
*
70885351 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
70885415 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
70885444 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70885509 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
70885523 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:70885514 original size:46 final size:46
Alignment explanation
Indices: 70885344--70885519 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
70885334 TGTAACCCGC
*
70885344 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
* *
70885390 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
70885440 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
70885483 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
70885520 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.56
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:70892972 original size:46 final size:46
Alignment explanation
Indices: 70892905--70893074 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
70892895 TGTAACCCGC
70892905 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
* * *
70892951 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-GGC--GTTCGCAT
* * * *
70893001 -C-TCA-CGAACTCAGACTCAACTCAACGAG-TCCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
*
70893044 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
70893075 TTCGGATGCT
Statistics
Matches: 101, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.56
47 22 0.22
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
Found at i:70893020 original size:93 final size:93
Alignment explanation
Indices: 70892912--70893083 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
70892902 CGCCCATAAG
* *
70892912 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
70892976 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
70893005 CGAACTCAGACTCAACTCAACGAGTCCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70893070 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
70893084 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:70900664 original size:43 final size:43
Alignment explanation
Indices: 70900523--70900643 Score: 190
Period size: 43 Copynumber: 2.8 Consensus size: 43
70900513 GTCATGCGCG
* *
70900523 TTACCCACAAACGCCGCTAAATGTGATGACCTTTAACGACGCT
1 TTACCCACAAACGCCACTAAATGTCATGACCTTTAACGACGCT
* *
70900566 TTACCCACAAACGCCACTAAATGTCATAACTTTTAACGACGCT
1 TTACCCACAAACGCCACTAAATGTCATGACCTTTAACGACGCT
70900609 TTACCCACAAACGCCACTAAA-GATCATGACCTTTA
1 TTACCCACAAACGCCACTAAATG-TCATGACCTTTA
70900644 GCAGCGTTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 70 0.99
ACGTcount: A:0.34, C:0.31, G:0.12, T:0.24
Consensus pattern (43 bp):
TTACCCACAAACGCCACTAAATGTCATGACCTTTAACGACGCT
Found at i:70900830 original size:19 final size:21
Alignment explanation
Indices: 70900789--70900836 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
70900779 TTAAAATTTT
70900789 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
70900810 AA-TAAAAAT-TTAGAATCAA
1 AACTAAAAATATTAAAATAAA
70900829 AACTAAAA
1 AACTAAAA
70900837 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:70900849 original size:19 final size:18
Alignment explanation
Indices: 70900827--70900865 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
70900817 ATTTAGAATC
70900827 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAAT-ATA
* *
70900846 AAAATTAAATTAAATATA
1 AAAACTAAAATAAATATA
70900864 AA
1 AA
70900866 GATATCAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAACTAAAATAAATATA
Found at i:70908871 original size:7 final size:7
Alignment explanation
Indices: 70908859--70908926 Score: 57
Period size: 7 Copynumber: 9.7 Consensus size: 7
70908849 ACTAATTAAT
70908859 CTAAACC
1 CTAAACC
70908866 CTAAACC
1 CTAAACC
*
70908873 CTTAACC
1 CTAAACC
*
70908880 CCAAACC
1 CTAAACC
*
70908887 CTTACACC
1 C-TAAACC
* *
70908895 TTAAACT
1 CTAAACC
*
70908902 CT-AACT
1 CTAAACC
*
70908908 CTAACCC
1 CTAAACC
70908915 CTAAACC
1 CTAAACC
70908922 CTAAA
1 CTAAA
70908927 ATATAATCCC
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
6 6 0.13
7 37 0.79
8 4 0.09
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:70908998 original size:14 final size:14
Alignment explanation
Indices: 70908981--70909074 Score: 61
Period size: 14 Copynumber: 6.7 Consensus size: 14
70908971 AGTTAACTCC
*
70908981 TAAACCTTAAACCT
1 TAAACCATAAACCT
* * *
70908995 TAAACTATATATCT
1 TAAACCATAAACCT
*
70909009 TAAACCAT--A-GT
1 TAAACCATAAACCT
70909020 T-AACTCATAAACCT
1 TAAAC-CATAAACCT
*
70909034 TAAACCCTAAACCATCT
1 TAAACCATAAA-C--CT
70909051 TAAACCATAAACCT
1 TAAACCATAAACCT
*
70909065 TAAACTATAA
1 TAAACCATAA
70909075 TGATAATTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
10 3 0.05
11 5 0.08
12 1 0.02
13 1 0.02
14 35 0.56
15 4 0.06
16 1 0.02
17 12 0.19
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (14 bp):
TAAACCATAAACCT
Found at i:70909275 original size:41 final size:40
Alignment explanation
Indices: 70909229--70909354 Score: 162
Period size: 41 Copynumber: 3.1 Consensus size: 40
70909219 GTTATATGAC
**
70909229 TTTTAGCGTTGTTTTATCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTA-CAAAAGCGCCGCTAATGCTCTGGT
* *
70909270 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATACTCTGGT
1 TTTTAGCGGCGTTTTA-CAAAAGCGCCGCTAATGCTCTGGT
* * *
70909311 TTTTAGCGGCGTTTTACCAAAGCGCCTCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTACAAAAGCGCCGCTAATGCTCTG-GT
70909352 TTT
1 TTT
70909355 ACAATTTTTG
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 17 0.23
41 57 0.77
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACAAAAGCGCCGCTAATGCTCTGGT
Found at i:70916592 original size:21 final size:20
Alignment explanation
Indices: 70916568--70916643 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 20
70916558 CTAGGAATTA
70916568 TGTGATCTGAACTCATGGAGT
1 TGTGATCTGAACTCAT-GAGT
** *
70916589 TGTGATCTGAGTTCATGATAT
1 TGTGATCTGAACTCATGA-GT
70916610 ATGTGACATCTGAACTCATTGAGT
1 -TGTG--ATCTGAACTCA-TGAGT
*
70916634 TGTGGTCTGA
1 TGTGATCTGA
70916644 GTTCATGATG
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
20 2 0.05
21 20 0.47
22 4 0.09
23 4 0.09
24 10 0.23
25 3 0.07
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:70916628 original size:45 final size:45
Alignment explanation
Indices: 70916572--70916662 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
70916562 GAATTATGTG
*
70916572 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
* * *
70916617 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATATGAC
1 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
70916662 A
1 A
70916663 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.36
Consensus pattern (45 bp):
ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
Found at i:70917113 original size:2 final size:2
Alignment explanation
Indices: 70917106--70917137 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
70917096 AAGAATAAGA
70917106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70917138 GAAGAATAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70917116 original size:49 final size:43
Alignment explanation
Indices: 70917024--70917110 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
70917014 AACTCATGAG
70917024 AATGACATGAGATATGATGAACTTGTGGTAAGAATAAGAATAT
1 AATGACATGAGATATGATGAACTTGTGGTAAGAATAAGAATAT
*
70917067 AATGATATGAGATATGATGAACTTGTGGTAAGAATAAGAATAT
1 AATGACATGAGATATGATGAACTTGTGGTAAGAATAAGAATAT
70917110 A
1 A
70917111 TATATATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.45, C:0.03, G:0.23, T:0.29
Consensus pattern (43 bp):
AATGACATGAGATATGATGAACTTGTGGTAAGAATAAGAATAT
Found at i:70922267 original size:12 final size:12
Alignment explanation
Indices: 70922250--70922276 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70922240 CATTCCGAAC
70922250 TCAATATCAATG
1 TCAATATCAATG
70922262 TCAATATCAATG
1 TCAATATCAATG
70922274 TCA
1 TCA
70922277 TAATTTCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (12 bp):
TCAATATCAATG
Found at i:70926286 original size:27 final size:26
Alignment explanation
Indices: 70926254--70926304 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
70926244 AGACAAGAGA
* *
70926254 GCTACGGGATATATGTAGCTAGGTCGC
1 GCTACGAGATAAAT-TAGCTAGGTCGC
*
70926281 GCTACGAGATAAATTGGCTAGGTC
1 GCTACGAGATAAATTAGCTAGGTC
70926305 ACATGGGTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 9 0.43
27 12 0.57
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (26 bp):
GCTACGAGATAAATTAGCTAGGTCGC
Found at i:70927438 original size:2 final size:2
Alignment explanation
Indices: 70927431--70927455 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70927421 TCATGACATG
70927431 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
70927456 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70936209 original size:79 final size:80
Alignment explanation
Indices: 70936109--70936261 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 80
70936099 CATTGGAATG
* * ** *
70936109 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCC-GGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
70936173 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
70936188 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
70936253 ATCGTGCGA
66 ATCGTGCGA
70936262 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 38 0.60
80 25 0.40
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:70936210 original size:40 final size:40
Alignment explanation
Indices: 70936109--70936315 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
70936099 CATTGGAATG
* * * * *
70936109 ATATCCGGGCTAAGTCCCGAAGGCAATT-ATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCACT
***
70936149 ATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
* * * *
70936188 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
* * * *
70936228 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
* * * * * * *
70936268 ATAACCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
70936308 ATATCCGG
1 ATATCCGG
70936316 TTAAATCCCG
Statistics
Matches: 137, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
38 3 0.02
39 30 0.22
40 104 0.76
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
Found at i:70940651 original size:41 final size:41
Alignment explanation
Indices: 70940594--70940676 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
70940584 CGAGCCTTGG
*
70940594 ATCTAACAGTTGTGTCTTTTGTCCCTCTCTAACTACCACTT
1 ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
* * *
70940635 ATCTAATAGCTGTGTCTTTTGTCCCTTTCTGACTACCACTT
1 ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
70940676 A
1 A
70940677 CATTTCCCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.19, C:0.28, G:0.11, T:0.42
Consensus pattern (41 bp):
ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
Found at i:70951875 original size:27 final size:26
Alignment explanation
Indices: 70951831--70951881 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
70951821 CTCGCTGCAA
*
70951831 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
70951858 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
70951882 AGCAACCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70960912 original size:23 final size:23
Alignment explanation
Indices: 70960882--70960927 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
70960872 TATAGAGACT
70960882 GTTAGTCTATTATCATTCAGTTA
1 GTTAGTCTATTATCATTCAGTTA
*
70960905 GTTAGTCTGTTATCATTCAGTTA
1 GTTAGTCTATTATCATTCAGTTA
70960928 CATAGTGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.48
Consensus pattern (23 bp):
GTTAGTCTATTATCATTCAGTTA
Found at i:70960933 original size:23 final size:23
Alignment explanation
Indices: 70960884--70960933 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
70960874 TAGAGACTGT
**
70960884 TAGTCTATTATCATTCAGTTAGT
1 TAGTCTATTATCATTCAGTTACA
*
70960907 TAGTCTGTTATCATTCAGTTACA
1 TAGTCTATTATCATTCAGTTACA
70960930 TAGT
1 TAGT
70960934 GTGGTGTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (23 bp):
TAGTCTATTATCATTCAGTTACA
Found at i:70967917 original size:26 final size:26
Alignment explanation
Indices: 70967888--70967944 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
70967878 GGGTAAAGTA
70967888 AAAACAAT-AGTAAGACTGCGATCAAC
1 AAAA-AATAAGTAAGACTGCGATCAAC
70967914 -AAAAATGAAGTAAGACTGCGATCAAC
1 AAAAAAT-AAGTAAGACTGCGATCAAC
70967940 AAAAA
1 AAAAA
70967945 TGAACTCTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 3 0.11
25 3 0.11
26 18 0.64
27 4 0.14
ACGTcount: A:0.54, C:0.16, G:0.16, T:0.14
Consensus pattern (26 bp):
AAAAAATAAGTAAGACTGCGATCAAC
Found at i:70967945 original size:26 final size:26
Alignment explanation
Indices: 70967896--70967948 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
70967886 TAAAAACAAT
70967896 AGTAAGACTGCGATCAACAAAAATGA
1 AGTAAGACTGCGATCAACAAAAATGA
70967922 AGTAAGACTGCGATCAACAAAAATGA
1 AGTAAGACTGCGATCAACAAAAATGA
70967948 A
1 A
70967949 CTCTGAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.15, G:0.19, T:0.15
Consensus pattern (26 bp):
AGTAAGACTGCGATCAACAAAAATGA
Found at i:70971377 original size:29 final size:28
Alignment explanation
Indices: 70971310--70971381 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
70971300 AAAATTGTGC
* * *
70971310 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
70971338 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
70971367 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70971382 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:70976351 original size:28 final size:28
Alignment explanation
Indices: 70976311--70976402 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
70976301 TGGGAAGTAG
70976311 TTGGGCCTGATGGGCCATAAGAATGTGA
1 TTGGGCCTGATGGGCCATAAGAATGTGA
*
70976339 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATAAGAATGTGA
* * * ** *
70976367 TTGGGTCGGATGAGCCATGCGAATGAGA
1 TTGGGCCTGATGGGCCATAAGAATGTGA
70976395 TTGGGCCT
1 TTGGGCCT
70976403 AAAGGGGCCA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.26
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATAAGAATGTGA
Found at i:70977335 original size:27 final size:27
Alignment explanation
Indices: 70976712--70977322 Score: 580
Period size: 27 Copynumber: 22.7 Consensus size: 27
70976702 TAATAAAGAG
*
70976712 AAATTA-CTGAAATACCCTCGATTTGTG
1 AAATTATC-GAAATACCCTCGATTTGTA
* *
70976739 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* **
70976766 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * * * *
70976793 AAATTACCAAAATACTCACAATTT-TG
1 AAATTATCGAAATACCCTCGATTTGTA
*
70976819 AAATTA-CTAAAATACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
70976846 AAATTATCGAAATACCCTCTCGATTTG-A
1 AAATTATCGAAATA-CC-CTCGATTTGTA
* * * *
70976874 AAATTATCGAAATACCCCCAAATTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
70976901 AAATTA-CTAAAACACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
70976928 AAATTA-CTGAAAAACCTTCGATTTGCA
1 AAATTATC-GAAATACCCTCGATTTGTA
* *
70976955 AAATTA-CTGAAAAACCTTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * * **
70976982 AAATTACCAAAATACCTTTAATTATG--
1 AAATTATCGAAATACCCTCGATT-TGTA
* * *
70977008 AAATTATTGAAATACCCTTGATTTTTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
70977035 AAATTATCAAAATACCCCCAATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
*
70977062 AAATTA-CTGAAACACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* *
70977089 AAATTATCAAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
70977116 AAATTATCAAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
70977143 AAATTACCGAAACACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
70977170 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
70977197 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
70977224 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
70977251 AAATTACCGAAACATCCCT-AATTTGTA
1 AAATTATCGAAATA-CCCTCGATTTGTA
* * *
70977278 AAATTATCAAAATACCCTTG-TAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
70977305 AAATTATCGAAATACCCT
1 AAATTATCGAAATACCCT
70977323 TCTAGTGTAA
Statistics
Matches: 497, Mismatches: 70, Indels: 34
0.83 0.12 0.06
Matches are distributed among these distances:
25 2 0.00
26 51 0.10
27 408 0.82
28 27 0.05
29 9 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:70977346 original size:27 final size:27
Alignment explanation
Indices: 70977139--70977365 Score: 104
Period size: 27 Copynumber: 8.4 Consensus size: 27
70977129 ACCCTCGATT
* * *
70977139 TGTAAAATTACCGAAACACCCTTG-ATT
1 TGTAAAATGACCGAAATACCCTTGTA-G
* * ** *
70977166 TGTAAAATTATCGAAATACCC-TCAATT
1 TGTAAAATGACCGAAATACCCTTGTA-G
* * * *
70977193 TGTAAAATTATCGAAATACCCTCG-ATT
1 TGTAAAATGACCGAAATACCCTTGTA-G
* * * *
70977220 TGTAAAATTATCGAAATACCCTCG-ATT
1 TGTAAAATGACCGAAATACCCTTGTA-G
* * ** *
70977247 TGTAAAATTACCGAAACATCCCTAAT-T
1 TGTAAAATGACCGAAATA-CCCTTGTAG
* * *
70977274 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* * *
70977301 TGTAAAATTATCGAAATACCCTTCTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
70977328 TGTAAAATGGCCGACATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
70977355 GGTAAAATGAC
1 TGTAAAATGAC
70977366 TGTTTTTCCG
Statistics
Matches: 171, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.04
27 161 0.94
28 4 0.02
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:70979572 original size:27 final size:27
Alignment explanation
Indices: 70979496--70979585 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
70979486 TTTAGTTTAC
* *
70979496 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
70979523 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
70979550 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
70979577 TAAAATTAC
1 TAAAATTAC
70979586 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:70979621 original size:27 final size:27
Alignment explanation
Indices: 70979594--70979773 Score: 249
Period size: 27 Copynumber: 6.7 Consensus size: 27
70979584 ACCAAAGTAC
70979594 CCCT-GATTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
* *
70979620 CCCTCGATTTACATAATTACCGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
*
70979647 CCC-CTGATTTACATAATTATCGTTTTA
1 CCCTC-GATTTACAGAATTATCGTTTTA
*
70979674 CCCTCGACTTACAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
70979701 CCCTCGATTTACAGAATTA-CAGTTTTA
1 CCCTCGATTTACAGAATTATC-GTTTTA
* **
70979728 CCCTCGATTTATAGAATTATTATTTTA
1 CCCTCGATTTACAGAATTATCGTTTTA
*
70979755 CCCTTGATTTACAGAATTA
1 CCCTCGATTTACAGAATTA
70979774 CTATTTTATT
Statistics
Matches: 138, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
26 6 0.04
27 131 0.95
28 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTATCGTTTTA
Found at i:70979816 original size:27 final size:27
Alignment explanation
Indices: 70979786--70980023 Score: 178
Period size: 27 Copynumber: 8.7 Consensus size: 27
70979776 ATTTTATTAC
*
70979786 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
70979813 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
70979840 AAAATTATCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * * *
70979867 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
*
70979894 AAAATTACCAAAATACCCTT-GATT-T
1 AAAATTACCAAAATACCCTTAGTTTGT
* *
70979919 ACAAAGTTA-CAGAAATACCCTTGACTTTCT
1 A-AAA-TTACCA-AAATACCCTT-AGTTTGT
* * * ***
70979949 AAAAATTA-TAGAAATACCATTGGTTAAC
1 -AAAATTACCA-AAATACCCTTAGTTTGT
** *
70979977 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAGTTTGT
* * *
70980004 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
70980024 GTAGGATGAA
Statistics
Matches: 166, Mismatches: 37, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
25 2 0.01
26 7 0.04
27 133 0.80
28 3 0.02
29 16 0.10
30 4 0.02
31 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAGTTTGT
Found at i:70979935 original size:81 final size:81
Alignment explanation
Indices: 70979787--70979941 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 81
70979777 TTTTATTACA
* * * **
70979787 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATCAAA
70979852 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
* * * *
70979868 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTTGATTTACAAAGTTA-CAGA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATCA-A
70979932 AATACCCTTG
65 AATACCCTTG
70979942 ACTTTCTAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 2 0.03
81 62 0.97
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATCAAA
ATACCCTTGGTTTGTG
Found at i:70980119 original size:27 final size:27
Alignment explanation
Indices: 70980042--70980119 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
70980032 AAATGACTAA
* *
70980042 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
70980069 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
70980096 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
70980120 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:70981308 original size:25 final size:25
Alignment explanation
Indices: 70981279--70981326 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70981269 TTATAATATG
* * *
70981279 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70981304 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70981327 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70981377 original size:9 final size:9
Alignment explanation
Indices: 70981365--70981441 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
70981355 TTTGATAAAC
70981365 ATGATATGT
1 ATGATATGT
*
70981374 ATGATATGCAC
1 ATGATATG--T
70981385 ATGATATGT
1 ATGATATGT
*
70981394 ATGATATGCAC
1 ATGATATG--T
* *
70981405 ATGACACGT
1 ATGATATGT
*
70981414 ATGATATGCAC
1 ATGATATG--T
70981425 ATGATATGT
1 ATGATATGT
70981434 ATGATATG
1 ATGATATG
70981442 CACACGAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (9 bp):
ATGATATGT
Found at i:70981390 original size:11 final size:11
Alignment explanation
Indices: 70981374--70981445 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
70981364 CATGATATGT
70981374 ATGATATGCAC
1 ATGATATGCAC
*
70981385 ATGATATG--T
1 ATGATATGCAC
70981394 ATGATATGCAC
1 ATGATATGCAC
* **
70981405 ATGACA--CGT
1 ATGATATGCAC
70981414 ATGATATGCAC
1 ATGATATGCAC
*
70981425 ATGATATG--T
1 ATGATATGCAC
70981434 ATGATATGCAC
1 ATGATATGCAC
70981445 A
1 A
70981446 CGAGATGTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70981453 original size:20 final size:20
Alignment explanation
Indices: 70981363--70981445 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
70981353 ATTTTGATAA
70981363 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70981383 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
70981403 ACATGACACGTATGATATGC
1 ACATGATATGTATGATATGC
70981423 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70981443 ACA
1 ACA
70981446 CGAGATGTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70981588 original size:24 final size:24
Alignment explanation
Indices: 70981499--70981616 Score: 172
Period size: 23 Copynumber: 5.0 Consensus size: 24
70981489 GAGGAAGTGC
70981499 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
70981523 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
70981546 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
70981569 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
70981593 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70981617 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
23 52 0.59
24 19 0.22
25 17 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:70984033 original size:28 final size:28
Alignment explanation
Indices: 70983948--70984021 Score: 130
Period size: 28 Copynumber: 2.6 Consensus size: 28
70983938 TGGGAAGTAG
70983948 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
70983976 TTGGGCCTAATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
70984004 TTGGGCTTGATGGGCCAT
1 TTGGGCCTGATGGGCCAT
70984022 GTGACCGAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.20, C:0.15, G:0.35, T:0.30
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:70984039 original size:56 final size:57
Alignment explanation
Indices: 70983948--70984056 Score: 139
Period size: 56 Copynumber: 1.9 Consensus size: 57
70983938 TGGGAAGTAG
* * * * *
70983948 TTGGGCCTGATGGGCCATATGAATGTGATTGGGCCT-AATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGATTCGGCCTAAAGGGGCCAAATGAATGTGA
* * *
70984004 TTGGGCTTGATGGGCCATGTGACCGAGATTCGGCCTAAAGGGGCCAAATGAAT
1 TTGGGCCTGATGGGCCATATGAACGAGATTCGGCCTAAAGGGGCCAAATGAAT
70984057 AAGTGTGGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
56 30 0.68
57 14 0.32
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.26
Consensus pattern (57 bp):
TTGGGCCTGATGGGCCATATGAACGAGATTCGGCCTAAAGGGGCCAAATGAATGTGA
Found at i:70984386 original size:27 final size:27
Alignment explanation
Indices: 70984356--70984703 Score: 366
Period size: 27 Copynumber: 13.0 Consensus size: 27
70984346 TAATAAAGAG
*
70984356 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
70984383 AAATTACCGAAACAACCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70984410 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
70984437 AAATTACCGAAATACCCT-TACTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
*
70984464 AAATTACC-AAAGTACCCTCGA-TTGTG
1 AAATTACCGAAA-TACCCTCGATTTGTA
** *
70984490 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70984517 AAATTACCGAAATACCCACGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70984543 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
70984570 AAATTACCCAAATACCC-CAATTTTTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70984596 AAATTACTGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** * ** *
70984623 AAATTACTAAAAAACATTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
70984650 AAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* *
70984676 AAATTACTGAAATACTCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
70984703 A
1 A
70984704 TTTGAATCAA
Statistics
Matches: 264, Mismatches: 49, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
26 89 0.34
27 174 0.66
28 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:70984647 original size:80 final size:81
Alignment explanation
Indices: 70984355--70984703 Score: 361
Period size: 80 Copynumber: 4.4 Consensus size: 81
70984345 ATAATAAAGA
* * *
70984355 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAACAA-CCTTGATTTGTAAAATTACCA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTA-CTAAAAAACCCTCGATTTGTAAAATTACCA
* *
70984419 AAACACCCTCGATTTGT
65 AAATACCCTCAATTTGT
* * * * ** * *
70984436 AAAATTACCGAAATACCCT-TACTTTGTAAAATTACCAAAGTACCCTCGA-TTGTGAAATTACTA
1 GAAATTACTGAAATACCCTCGA-TTTGTAAAATTACTAAAAAACCCTCGATTTGTAAAATTACCA
70984499 AAATACCCTCAATTTGT
65 AAATACCCTCAATTTGT
* * * * * * * *
70984516 AAAATTACCGAAATACCCACGA-TTGTGAAATTA-TCGAAATACCCTCAATTTGTAAAATTACCC
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACT-AAAAAACCCTCGATTTGTAAAATTACCA
*
70984579 AAATACCC-CAATTTTT
65 AAATACCCTCAATTTGT
* ** * *
70984595 GAAATTACTGAAACACCCTCGATTTGTAAAATTACTAAAAAACATTTGATTTGTAAAATTACCGA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAAAACCCTCGATTTGTAAAATTACCAA
*
70984660 AATACCCTCGA-TTGT
66 AATACCCTCAATTTGT
*
70984675 GAAATTACTGAAATACTCTCGATTTGTAA
1 GAAATTACTGAAATACCCTCGATTTGTAA
70984704 TTTGAATCAA
Statistics
Matches: 222, Mismatches: 38, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
79 45 0.20
80 139 0.63
81 38 0.17
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
GAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAAAACCCTCGATTTGTAAAATTACCAA
AATACCCTCAATTTGT
Found at i:70984703 original size:53 final size:54
Alignment explanation
Indices: 70984356--70984703 Score: 366
Period size: 53 Copynumber: 6.5 Consensus size: 54
70984346 TAATAAAGAG
* * * *
70984356 AAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAACAACCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
70984410 AAATTACCAAAACACCCTCGATTTGTAAAATTACCGAAATACCCT-TACTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTTGTA
* ** *
70984464 AAATTACC-AAAGTACCCTCGA-TTGTGAAATTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAA-TACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
70984517 AAATTACCGAAATACCCACGA-TTGTGAAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * * *
70984570 AAATTACCCAAATACCC-CAATTTTTGAAATTACTGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
** * ** * *
70984623 AAATTACTAAAAAACATTTGATTTGTAAAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* *
70984676 AAATTACTGAAATACTCTCGATTTGTAA
1 AAATTACCGAAATACCCTCGATTTGTAA
70984704 TTTGAATCAA
Statistics
Matches: 249, Mismatches: 39, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
52 2 0.01
53 157 0.63
54 90 0.36
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:70988040 original size:41 final size:41
Alignment explanation
Indices: 70987880--70988050 Score: 215
Period size: 41 Copynumber: 4.2 Consensus size: 41
70987870 TCGGGCTTTA
* * * *
70987880 TGCCTAGCAGGCTTTGTGCTGGTGTATAATATCAAGCCTAT
1 TGCCTAGCAGGCTTTATGCTGGTGTATTATATCAGGCTTAT
* *
70987921 TGCCTAGCAGGCTTTATGCCGGT-TCATTATATCATGCTTAT
1 TGCCTAGCAGGCTTTATGCTGGTGT-ATTATATCAGGCTTAT
70987962 TGCCTAGCAGGCTTTATGCTGGTGTATTATATCAGGCTTAT
1 TGCCTAGCAGGCTTTATGCTGGTGTATTATATCAGGCTTAT
*
70988003 TGCCTAGCAGGCTCTT-TTCTGGTGTATTATA-CTAGGCTT-T
1 TGCCTAGCAGGCT-TTATGCTGGTGTATTATATC-AGGCTTAT
70988043 ATGCCTAG
1 -TGCCTAG
70988051 AAAATTTTAT
Statistics
Matches: 117, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
40 3 0.03
41 111 0.95
42 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (41 bp):
TGCCTAGCAGGCTTTATGCTGGTGTATTATATCAGGCTTAT
Found at i:70990180 original size:40 final size:40
Alignment explanation
Indices: 70990110--70990329 Score: 227
Period size: 40 Copynumber: 5.5 Consensus size: 40
70990100 TATTCGAATG
* *
70990110 ATATCCGGACTAAG-TCCCGAAGGCTTTTGTGCTCAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCT-AGTGACT
* * * *
70990151 ATATCCAGACTAAGAT-CGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
70990190 ATATCCGGGCCAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
70990230 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * **
70990270 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
70990309 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
70990330 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 35 0.23
40 90 0.59
41 13 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:70997650 original size:57 final size:57
Alignment explanation
Indices: 70997589--70997704 Score: 153
Period size: 57 Copynumber: 2.0 Consensus size: 57
70997579 CACATACCTG
* * *
70997589 TATATAGCCCACAAGG-CCTAATCTCTTTCATATGGCCCATGAGGCCCAAATCACATT
1 TATATAGCCCACAAGGCCCAAATCACATTCATAT-GCCCATGAGGCCCAAATCACATT
* ** *
70997646 TATATGGCCCATTAGGCCCAAATCACATTCATATGCCCATTAGGCCCAAATCACATT
1 TATATAGCCCACAAGGCCCAAATCACATTCATATGCCCATGAGGCCCAAATCACATT
70997703 TA
1 TA
70997705 CAGTCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 37 0.73
58 14 0.27
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (57 bp):
TATATAGCCCACAAGGCCCAAATCACATTCATATGCCCATGAGGCCCAAATCACATT
Found at i:70997700 original size:28 final size:29
Alignment explanation
Indices: 70997615--70997702 Score: 151
Period size: 29 Copynumber: 3.1 Consensus size: 29
70997605 CCTAATCTCT
*
70997615 TTCATATGGCCCATGAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
*
70997644 TTTATATGGCCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
70997673 TTCATAT-GCCCATTAGGCCCAAATCACA
1 TTCATATGGCCCATTAGGCCCAAATCACA
70997701 TT
1 TT
70997703 TACAGTCATG
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 23 0.41
29 33 0.59
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGCCCAAATCACA
Found at i:70999208 original size:12 final size:12
Alignment explanation
Indices: 70999191--70999215 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70999181 CGTACATGAG
70999191 AGAAAAAAAAAA
1 AGAAAAAAAAAA
70999203 AGAAAAAAAAAA
1 AGAAAAAAAAAA
70999215 A
1 A
70999216 AAAGAAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAAAA
Found at i:70999231 original size:15 final size:15
Alignment explanation
Indices: 70999193--70999222 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70999183 TACATGAGAG
70999193 AAAAAAAAAAAGAAA
1 AAAAAAAAAAAGAAA
70999208 AAAAAAAAAAAGAAA
1 AAAAAAAAAAAGAAA
70999223 GGAAGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAA
Found at i:71000521 original size:40 final size:40
Alignment explanation
Indices: 71000462--71000568 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
71000452 CAATTGAATG
* * * *
71000462 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
71000502 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
71000542 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
71000569 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:71000626 original size:39 final size:40
Alignment explanation
Indices: 71000500--71000628 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
71000490 ATGCTGGAAA
* *
71000500 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGC-TAGTGA
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGG
* * * *
71000540 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
*
71000580 TTCTATCCGGGCTAAGACCCG-AGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
71000619 TTATATCCGG
1 TTATATCCGG
71000629 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.37
40 47 0.63
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
Found at i:71007273 original size:18 final size:18
Alignment explanation
Indices: 71007228--71007265 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
71007218 CGTACATGAG
* *
71007228 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAGAA
71007246 AGAAAAAAAAAAAAAGAA
1 AGAAAAAAAAAAAAAGAA
71007264 AG
1 AG
71007266 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAGAA
Found at i:71008563 original size:40 final size:40
Alignment explanation
Indices: 71008504--71008610 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
71008494 CAATTGAATG
* * * *
71008504 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
71008544 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
71008584 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
71008611 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:71008630 original size:40 final size:39
Alignment explanation
Indices: 71008545--71008671 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
71008535 CTGGAAATTA
* * *
71008545 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
71008583 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
71008625 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
71008665 TATCCGG
1 TATCCGG
71008672 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:71011556 original size:24 final size:24
Alignment explanation
Indices: 71011457--71011557 Score: 130
Period size: 24 Copynumber: 4.2 Consensus size: 24
71011447 AAGTCTATCA
*
71011457 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
71011481 GGATAGAATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
71011505 GGATAGGATGTAGAAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
71011529 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
71011553 GGAGA
1 GGAGA
71011558 ACAGTGTTGG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 67 1.00
ACGTcount: A:0.35, C:0.02, G:0.40, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:71012994 original size:26 final size:26
Alignment explanation
Indices: 71012965--71013072 Score: 146
Period size: 26 Copynumber: 4.1 Consensus size: 26
71012955 AGGAAGCGTC
* * *
71012965 CTGGTGGCTATGCCACATTTTCTGAT
1 CTGGTGGCTCTGCCACATTATCTGTT
71012991 CTGGTGGCTCTGCCACATATATCT-TT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
71013017 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
71013044 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
71013070 CTG
1 CTG
71013073 CAGCAATGCT
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
26 52 0.70
27 22 0.30
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:71013061 original size:53 final size:52
Alignment explanation
Indices: 71012965--71013072 Score: 146
Period size: 53 Copynumber: 2.1 Consensus size: 52
71012955 AGGAAGCGTC
* *
71012965 CTGGTGGCTATGCCACATTTTCTGATCTGGTGGCTCTGCCACATATATCT-TT
1 CTGGTGGCTATGCCACATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
71013017 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
71013070 CTG
1 CTG
71013073 CAGCAATGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
52 20 0.41
53 29 0.59
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.39
Consensus pattern (52 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:71016206 original size:40 final size:40
Alignment explanation
Indices: 71016162--71016273 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
71016152 TGGAAATTAT
* * *
71016162 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGCTAA
* *
71016202 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAA
*
71016242 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAA
71016274 ATCGTGATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 59 0.92
41 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGCTAA
Found at i:71016286 original size:40 final size:38
Alignment explanation
Indices: 71016116--71016303 Score: 146
Period size: 40 Copynumber: 4.8 Consensus size: 38
71016106 TGAGAAATTG
* * * *
71016116 AATG-ATATCCGGGCTAAGCCCCGAAGACGTTAATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGCATT--TG-TGCA
* * *
71016156 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
71016193 AGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
71016233 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
71016273 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
71016304 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 2 0.02
40 110 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:71021331 original size:27 final size:28
Alignment explanation
Indices: 71021274--71021343 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
71021264 AAAATTGTAC
**
71021274 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
71021302 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
71021329 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
71021344 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:71023875 original size:17 final size:16
Alignment explanation
Indices: 71023844--71023874 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71023834 CAAACTAATC
71023844 CAAAAATCACATTTTA
1 CAAAAATCACATTTTA
*
71023860 CAAAAATTACATTTT
1 CAAAAATCACATTTT
71023875 TGCCCCTAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (16 bp):
CAAAAATCACATTTTA
Found at i:71028367 original size:24 final size:24
Alignment explanation
Indices: 71028331--71028455 Score: 187
Period size: 24 Copynumber: 5.2 Consensus size: 24
71028321 AAGTCTGTCA
* *
71028331 GGAGAGGATTTAGGAGTTGAGAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
71028355 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
71028379 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
71028403 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
71028427 GGAGAGGATTTAGGAGCTAATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
71028451 GGAGA
1 GGAGA
71028456 ACAGTGTTGG
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 95 1.00
ACGTcount: A:0.34, C:0.02, G:0.41, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:71029906 original size:27 final size:27
Alignment explanation
Indices: 71029868--71029975 Score: 92
Period size: 27 Copynumber: 4.0 Consensus size: 27
71029858 AAGCGTCCTG
*
71029868 GTGGCTATGCCACATTTATCTGATCTA
1 GTGGCTCTGCCACATTTATCTGATCTA
* * * *
71029895 GTGGTTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACATTTATCTGATCTA
* * * * *
71029922 GTGGCTCTGCCATAATTATCTGTTTTG
1 GTGGCTCTGCCACATTTATCTGATCTA
* * *
71029949 GTGACTCTGTCACA-TTATCTGTTCTA
1 GTGGCTCTGCCACATTTATCTGATCTA
71029975 G
1 G
71029976 CAGCAATGCT
Statistics
Matches: 66, Mismatches: 15, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
26 11 0.17
27 55 0.83
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (27 bp):
GTGGCTCTGCCACATTTATCTGATCTA
Found at i:71031372 original size:17 final size:18
Alignment explanation
Indices: 71031350--71031383 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71031340 CACATTGAAG
71031350 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
71031367 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
71031384 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:71032683 original size:27 final size:29
Alignment explanation
Indices: 71032610--71032689 Score: 103
Period size: 28 Copynumber: 2.9 Consensus size: 29
71032600 ACATACCTGT
* * *
71032610 ATATAGCCCACTAGGCCC-AATCTCTTTC
1 ATATGGCCCATTAGGCCCAAATCACTTTC
71032638 ATATGGCCCATTAGGCCCAAATCAC-TTC
1 ATATGGCCCATTAGGCCCAAATCACTTTC
*
71032666 ATAT-GTCCATTAGGCCCAAATCAC
1 ATATGGCCCATTAGGCCCAAATCAC
71032690 ATTTACAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
27 19 0.40
28 23 0.49
29 5 0.11
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACTTTC
Found at i:71033649 original size:12 final size:13
Alignment explanation
Indices: 71033622--71033654 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
71033612 ATATATATAC
71033622 TAAA-AAAATAAT
1 TAAATAAAATAAT
71033634 TAAATAAAATAA-
1 TAAATAAAATAAT
71033646 TAAATAAAA
1 TAAATAAAA
71033655 ATACAAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAATAAAATAAT
Found at i:71033655 original size:13 final size:14
Alignment explanation
Indices: 71033625--71033657 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
71033615 TATATACTAA
71033625 AAAAATAATTAAAT
1 AAAAATAATTAAAT
71033639 -AAAATAA-TAAAT
1 AAAAATAATTAAAT
71033651 AAAAATA
1 AAAAATA
71033658 CAAACCTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATAATTAAAT
Found at i:71034730 original size:27 final size:27
Alignment explanation
Indices: 71034697--71034751 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
71034687 AGACTAAACA
71034697 TGCAATTATAAAATATTTAAACACATT
1 TGCAATTATAAAATATTTAAACACATT
71034724 TGCAATTATAAAATATTTAAACACATT
1 TGCAATTATAAAATATTTAAACACATT
71034751 T
1 T
71034752 CATTTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (27 bp):
TGCAATTATAAAATATTTAAACACATT
Found at i:71036318 original size:68 final size:70
Alignment explanation
Indices: 71036246--71036443 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
71036236 ACACCCTGTA
* * * *
71036246 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
71036308 ATAAAT
65 ATAAAT
*
71036314 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
71036379 ATAAAT
65 ATAAAT
*
71036385 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
71036444 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:71036357 original size:41 final size:41
Alignment explanation
Indices: 71036312--71036429 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
71036302 TGAAAGATAA
71036312 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
71036353 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71036383 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71036424 ATGTAG
1 ATGTAG
71036430 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:71036369 original size:71 final size:71
Alignment explanation
Indices: 71036280--71036443 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71036270 GAGATGTATC
71036280 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71036345 AGGACA
66 AGGACA
71036351 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71036416 AGGACA
66 AGGACA
71036422 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71036444 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71042191 original size:57 final size:57
Alignment explanation
Indices: 71042137--71042245 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 57
71042127 CTGTATATAG
* *
71042137 CCCACTAGGCCC-AATCTCTTTCATATGGCCCATGAGGCCCAAATCACATTTATATGT
1 CCCACTAGGCCCAAATCACATTCATATGG-CCATGAGGCCCAAATCACATTTATATGT
* *
71042194 CCCATTAGGCCCAAATCACATTCATATGGCCATTAGGCCCAAATCACATTTA
1 CCCACTAGGCCCAAATCACATTCATATGGCCATGAGGCCCAAATCACATTTA
71042246 CAGTCATGCT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
57 33 0.70
58 14 0.30
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (57 bp):
CCCACTAGGCCCAAATCACATTCATATGGCCATGAGGCCCAAATCACATTTATATGT
Found at i:71042192 original size:29 final size:29
Alignment explanation
Indices: 71042130--71042245 Score: 148
Period size: 28 Copynumber: 4.1 Consensus size: 29
71042120 CACATACCTG
* * *
71042130 TATATAGCCCACTAGGCCC-AATCTC-TT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
71042157 TCATATGGCCCATGAGGCCCAAATCACATT
1 T-ATATGGCCCATTAGGCCCAAATCACATT
*
71042187 TATATGTCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
71042216 CATATGG-CCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
71042244 TA
1 TA
71042246 CAGTCATGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.01
28 37 0.48
29 36 0.47
30 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:71042241 original size:28 final size:28
Alignment explanation
Indices: 71042142--71042243 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 28
71042132 TATAGCCCAC
* *
71042142 TAGGCCC-AATCTCTTTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATATGG-CCAT
* * *
71042170 GAGGCCCAAATCACATTTATATGTCCCAT
1 TAGGCCCAAATCACATTCATATG-GCCAT
71042199 TAGGCCCAAATCACATTCATATGGCCAT
1 TAGGCCCAAATCACATTCATATGGCCAT
71042227 TAGGCCCAAATCACATT
1 TAGGCCCAAATCACATT
71042244 TACAGTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 27 0.42
29 37 0.58
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
TAGGCCCAAATCACATTCATATGGCCAT
Found at i:71053679 original size:43 final size:43
Alignment explanation
Indices: 71053598--71053682 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
71053588 AAATCATGCA
* * **
71053598 ATGCCAACGTCCCAGACGTGGTCTTACATGTAGCCACATATCG
1 ATGCCAACGTCCCAAACATGGTCTTACATGTAAACACATATCG
71053641 ATGCC-ACTGTCCCAAACATGGTCTTAC-TCGTAAACACATATC
1 ATGCCAAC-GTCCCAAACATGGTCTTACAT-GTAAACACATATC
71053683 AGAATCACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACATGGTCTTACATGTAAACACATATCG
Found at i:71055511 original size:39 final size:40
Alignment explanation
Indices: 71055411--71055592 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
71055401 TCGAATGATG
* * *
71055411 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
71055451 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
71055491 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
71055529 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
71055570 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
71055593 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:71055556 original size:78 final size:80
Alignment explanation
Indices: 71055411--71055592 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
71055401 TCGAATGATG
* * * *
71055411 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
71055476 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
71055491 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
71055553 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
71055570 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
71055593 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:71061226 original size:40 final size:40
Alignment explanation
Indices: 71061181--71061409 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
71061171 GCTACTTGCT
*
71061181 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
71061221 TAAATGCCTTCGTGACTTAGCCCGGTTAAAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
71061261 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * * *
71061301 CAATTGCCTTTGGGACTTAGCCCGG-AATTGGTCATTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * * *
71061341 CAATTGCCTTCGGGACTTAGCCCAG-AATTGGTCATTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
71061381 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
71061410 CATCCGAATA
Statistics
Matches: 168, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 166 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:71068003 original size:26 final size:26
Alignment explanation
Indices: 71067972--71068057 Score: 93
Period size: 26 Copynumber: 3.1 Consensus size: 26
71067962 GACTCATATA
71067972 TCAATAAATCATGAAACATCTACATT
1 TCAATAAATCATGAAACATCTACATT
*
71067998 TCAATAAATCATCCGAATATCCATGC-ACATA
1 TCAATAAATCAT--GAA-A--CAT-CTACATT
*
71068029 TCAATAAATCATGACACATCTACATT
1 TCAATAAATCATGAAACATCTACATT
71068055 TCA
1 TCA
71068058 TTTTCATAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
25 1 0.02
26 22 0.44
28 4 0.08
29 3 0.06
31 19 0.38
32 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.29
Consensus pattern (26 bp):
TCAATAAATCATGAAACATCTACATT
Found at i:71070302 original size:42 final size:43
Alignment explanation
Indices: 71070256--71070341 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
71070246 TGTGTCTCAT
*
71070256 AATCATGAACTGAAACCACAACTC-ATAAGTTCAAATCACATA
1 AATCATGAACTCAAACCACAACTCAATAAGTTCAAATCACATA
* * * * *
71070298 AATCATGAACTCAGAGCACAACTCAATGAGTTCAGATTACATA
1 AATCATGAACTCAAACCACAACTCAATAAGTTCAAATCACATA
71070341 A
1 A
71070342 TTCCTAGTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 21 0.57
43 16 0.43
ACGTcount: A:0.45, C:0.22, G:0.10, T:0.22
Consensus pattern (43 bp):
AATCATGAACTCAAACCACAACTCAATAAGTTCAAATCACATA
Found at i:71079957 original size:30 final size:29
Alignment explanation
Indices: 71079908--71079968 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
71079898 CAAGTAGCCG
*
71079908 AAGCTAGTTAAACCGCACACTTAGTGCCA
1 AAGCTAGTTAAACCACACACTTAGTGCCA
*
71079937 AAGCTAGTTTAAATCACACACTTAGTGCCA
1 AAGCTAG-TTAAACCACACACTTAGTGCCA
71079967 AA
1 AA
71079969 ACTTCTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.23
Consensus pattern (29 bp):
AAGCTAGTTAAACCACACACTTAGTGCCA
Found at i:71087744 original size:50 final size:50
Alignment explanation
Indices: 71087618--71087814 Score: 243
Period size: 50 Copynumber: 3.9 Consensus size: 50
71087608 TAGCCAAAGC
* * *
71087618 TATCCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
*
71087667 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
* * * * * * * *
71087717 CATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-T
* * *
71087768 TATCGGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCT
71087815 CACAATAGAT
Statistics
Matches: 125, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
49 42 0.34
50 45 0.36
51 38 0.30
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAAT
Found at i:71087791 original size:101 final size:99
Alignment explanation
Indices: 71087631--71087814 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
71087621 CCGGTACGCA
* * *
71087631 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
71087696 GTACTACACATGTGACCTAATCATCTGATACACG
66 GTACTACACATGCGACCTAATCATCTGATACACG
* * * * *
71087730 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACTCATAGTAGCCTGCACT
1 TAGTAGCCTACACATAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
71087795 TAGTACTACACATGCGACCT
64 TAGTACTACACATGCGACCT
71087815 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 27 0.36
100 3 0.04
101 44 0.59
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTACACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGACCTAATCATCTGATACACG
Found at i:71090421 original size:54 final size:53
Alignment explanation
Indices: 71090363--71090478 Score: 128
Period size: 54 Copynumber: 2.2 Consensus size: 53
71090353 ATTACCGTTT
** *
71090363 TACCCTTGATT-TACAAAATTATTAAAATACCCCTGTAGGGTAGAATTATTGAAA
1 TACCCTTGATTGTA-AAAA-TACCAAAATACCCCTGTAGGGTAGAATTATCGAAA
* * *
71090417 TACCC-TGGTTGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTATCGAGA
1 TACCCTTGATT--GTAAAAATACCAAAATACCCCTGTAGGGTAGAATTATCGAAA
71090471 TACCCTTG
1 TACCCTTG
71090479 TGGGGTAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
53 4 0.08
54 41 0.79
55 5 0.10
56 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (53 bp):
TACCCTTGATTGTAAAAATACCAAAATACCCCTGTAGGGTAGAATTATCGAAA
Found at i:71090473 original size:27 final size:27
Alignment explanation
Indices: 71090387--71090491 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
71090377 AAAATTATTA
*
71090387 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTATCG
* * * *
71090414 AAATA-CCCTGGTTGGGTAGAAATACCA
1 AAATACCCCT-GTAGGGTAGAATTATCG
71090441 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* * * *
71090468 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
71090492 CCATTTTGCC
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.06
27 55 0.87
28 4 0.06
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTATCG
Found at i:71090504 original size:54 final size:54
Alignment explanation
Indices: 71090386--71090494 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
71090376 CAAAATTATT
* *
71090386 AAAATACCCCTGTAGGGTAGAATTATTGAAATACCCTGGTTGGGTAGAAATACC
1 AAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTGGTGGGGTAGAAATACC
* *
71090440 AAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTGTGGGGTA-AAATTACC
1 AAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTGGTGGGGTAGAAA-TACC
71090494 A
1 A
71090495 TTTTGCCCCT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
53 3 0.06
54 47 0.94
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (54 bp):
AAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTGGTGGGGTAGAAATACC
Found at i:71090896 original size:20 final size:20
Alignment explanation
Indices: 71090849--71090896 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
71090839 CGAAGGCTGT
* *
71090849 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTATGGGCTTC
**
71090869 GTATCGATATTATGGGCTTC
1 GTGCCGATATTATGGGCTTC
71090889 GTGCCGAT
1 GTGCCGAT
71090897 TATAGACCCG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (20 bp):
GTGCCGATATTATGGGCTTC
Found at i:71091117 original size:6 final size:6
Alignment explanation
Indices: 71091108--71091226 Score: 84
Period size: 6 Copynumber: 19.3 Consensus size: 6
71091098 TTGCATTCAC
* * * *
71091108 ATTCTG ATTCTG ATT-TT ATTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
71091158 ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
71091207 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
71091227 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
5 7 0.08
6 70 0.80
7 6 0.07
8 5 0.06
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:71091143 original size:31 final size:30
Alignment explanation
Indices: 71091108--71091211 Score: 110
Period size: 31 Copynumber: 3.6 Consensus size: 30
71091098 TTGCATTCAC
* *
71091108 ATTCTGATTCTGATTTTATTACCTGATACTG
1 ATTCTGATTCTGATTTT-TCACCTGATTCTG
*
71091139 ATTCTGATTCTG-----TCACCTAATTCTG
1 ATTCTGATTCTGATTTTTCACCTGATTCTG
*
71091164 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATT-TTTCACCTGATTCTG
*
71091195 ATTCTGATTCTCATTTT
1 ATTCTGATTCTGATTTT
71091212 GATTCTAGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
25 22 0.36
30 1 0.02
31 38 0.62
ACGTcount: A:0.19, C:0.20, G:0.12, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTTTTCACCTGATTCTG
Found at i:71091189 original size:25 final size:25
Alignment explanation
Indices: 71091108--71091205 Score: 106
Period size: 25 Copynumber: 3.7 Consensus size: 25
71091098 TTGCATTCAC
* * *
71091108 ATTCTGATTCTGATTTTATTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
71091133 ATACTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCA-C-----CTG
71091164 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
71091189 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
71091206 CATTTTGATT
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
25 37 0.60
26 1 0.02
30 1 0.02
31 23 0.37
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:71099491 original size:25 final size:26
Alignment explanation
Indices: 71099442--71099491 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71099432 TAGGTAAGTT
*
71099442 TGTATGTTAAATAAGCTTTACTTTAAA
1 TGTATGTTAAAT-AGCTTTAATTTAAA
*
71099469 TGTATTTTAAAT-GCTTTAATTTA
1 TGTATGTTAAATAGCTTTAATTTA
71099492 TGCATGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (26 bp):
TGTATGTTAAATAGCTTTAATTTAAA
Found at i:71102484 original size:12 final size:12
Alignment explanation
Indices: 71102467--71102498 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
71102457 ATGATAATAA
71102467 ACACACGGGTAG
1 ACACACGGGTAG
*
71102479 ACACACAGGTAG
1 ACACACGGGTAG
71102491 ACACACGG
1 ACACACGG
71102499 CCGTGTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.38, C:0.28, G:0.28, T:0.06
Consensus pattern (12 bp):
ACACACGGGTAG
Found at i:71107876 original size:34 final size:34
Alignment explanation
Indices: 71107833--71107900 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
71107823 AATGTAACAG
71107833 CCTGATTTAGGGCCTAGTCGGAATAGTGGTCTTA
1 CCTGATTTAGGGCCTAGTCGGAATAGTGGTCTTA
71107867 CCTGATTTAGGGCCTAGTCGGAATAGTGGTCTTA
1 CCTGATTTAGGGCCTAGTCGGAATAGTGGTCTTA
71107901 GGACCACAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (34 bp):
CCTGATTTAGGGCCTAGTCGGAATAGTGGTCTTA
Found at i:71109306 original size:50 final size:50
Alignment explanation
Indices: 71109242--71109375 Score: 166
Period size: 49 Copynumber: 2.7 Consensus size: 50
71109232 AGATGTGTCC
* * *
71109242 GTGTAAGACCATGTCTAGGACATGGCATCGGCACGGT-TATG-TGAGAGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCAC--TCGAAGATGAGAGCCA
* * *
71109292 GTGTAAGACTATGTCTGGGACATGGCATCGGC-CTCGAAGATGATAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCACTCGAAGATGAGAGCCA
*
71109341 ATGTAAGACCATGTCTAGGACATGGCATCGGCACT
1 GTGTAAGACCATGTCTAGGACATGGCATCGGCACT
71109376 TTACCCATGA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 1 0.01
48 2 0.03
49 37 0.51
50 32 0.44
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
GTGTAAGACCATGTCTAGGACATGGCATCGGCACTCGAAGATGAGAGCCA
Found at i:71112155 original size:46 final size:44
Alignment explanation
Indices: 71112099--71112215 Score: 137
Period size: 46 Copynumber: 2.6 Consensus size: 44
71112089 AGAGTTAGTG
*
71112099 TAAGACATGTCTGGGACATGCATCGACCT-CGAGATGTAATCCAGTC
1 TAAGACATGTCTGGGACATGCATCGA-CTACGAGATGT-AT-CAATC
* * * *
71112145 TAAGACATGTCTGGGACATGTATCGACTATGAGATGTGTCAATG
1 TAAGACATGTCTGGGACATGCATCGACTACGAGATGTATCAATC
71112189 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGA-CATGTCTGGGACAT-GCATCG
71112216 GTACGGACAT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 8 0.13
45 17 0.27
46 37 0.60
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGACTACGAGATGTATCAATC
Found at i:71112347 original size:47 final size:48
Alignment explanation
Indices: 71112230--71112361 Score: 142
Period size: 47 Copynumber: 2.8 Consensus size: 48
71112220 GGACATGTGA
* * *
71112230 GAGCCAGTGTAAGATCATGTTTAGGACATGGCATCGGCCTCGATTTCGAT
1 GAGCCAGTGTAAGAACATGTCTAGGACATGGCATC-GACTCGA-TTCGAT
* * * * * *
71112280 -AGTCACTGTAAGACCATGTCTACGACATGGCATCGACTTGA-TGGAT
1 GAGCCAGTGTAAGAACATGTCTAGGACATGGCATCGACTCGATTCGAT
*
71112326 GAGCCAGTGTAAGAACATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGAACATGTCTAGGACATGGCATCG
71112362 GCATTACACC
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
46 4 0.06
47 30 0.44
48 5 0.07
49 29 0.43
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
GAGCCAGTGTAAGAACATGTCTAGGACATGGCATCGACTCGATTCGAT
Found at i:71112356 original size:96 final size:98
Alignment explanation
Indices: 71112182--71112363 Score: 246
Period size: 96 Copynumber: 1.9 Consensus size: 98
71112172 TATGAGATGT
** *
71112182 GTCAATGTAAGACCATGTCTGGGACATGGCATCGGTACGGACATGTGAGAGCCAGTGTAAGATCA
1 GTCAATGTAAGACCATGTCTACGACATGGCATCGGTACGGA-ATGTGAGAGCCAGTGTAAGAACA
*
71112247 TGTTTAGGACATGGCATCGGCCTCGATTTCGATA
65 TGTCTAGGACATGGCATCGGCCTCGATTTCGATA
* *
71112281 GTCACTGTAAGACCATGTCTACGACATGGCATC-G-ACTTG-ATG-GATGAGCCAGTGTAAGAAC
1 GTCAATGTAAGACCATGTCTACGACATGGCATCGGTAC-GGAATGTGA-GAGCCAGTGTAAGAAC
*
71112342 ATGTCTGGGACATGGCATCGGC
64 ATGTCTAGGACATGGCATCGGC
71112364 ATTACACCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
95 2 0.03
96 38 0.51
97 2 0.03
98 2 0.03
99 30 0.41
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (98 bp):
GTCAATGTAAGACCATGTCTACGACATGGCATCGGTACGGAATGTGAGAGCCAGTGTAAGAACAT
GTCTAGGACATGGCATCGGCCTCGATTTCGATA
Found at i:71113387 original size:28 final size:28
Alignment explanation
Indices: 71113347--71113412 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
71113337 ACACAAGCTA
71113347 GGACACGGGCGTGTCATGGCCGTGTGAG
1 GGACACGGGCGTGTCATGGCCGTGTGAG
71113375 GGACACGGGCGTGTCATGGCCGTGTGAG
1 GGACACGGGCGTGTCATGGCCGTGTGAG
*
71113403 GGATACGGGC
1 GGACACGGGC
71113413 CATGGACACG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.15, C:0.21, G:0.47, T:0.17
Consensus pattern (28 bp):
GGACACGGGCGTGTCATGGCCGTGTGAG
Found at i:71116426 original size:19 final size:20
Alignment explanation
Indices: 71116402--71116439 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71116392 GGTACCACTA
71116402 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
71116421 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
71116440 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:71116828 original size:93 final size:93
Alignment explanation
Indices: 71116669--71116839 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
71116659 GCCCCTAAGT
* *
71116669 GAACTCAGACTCAACTCAATGAGCTCGGGCATTCGCATCAATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCAA
71116734 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
71116762 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCAA
71116827 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71116840 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71116836 original size:46 final size:46
Alignment explanation
Indices: 71116664--71116836 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
71116654 AACCCGCCCC
* * * * * *
71116664 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCATTCGCATCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
71116710 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
71116758 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
71116803 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71116837 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.55
47 29 0.28
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Done.