Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 238 of 328
Found at i:71116855 original size:46 final size:45
Alignment explanation
Indices: 71116714--71116855 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 45
71116704 CATCAATAAA
71116714 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * *
71116761 CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAG
71116807 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
71116853 TGA
1 TGA
71116856 CATGTCACTT
Statistics
Matches: 78, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 31 0.40
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:71120775 original size:37 final size:37
Alignment explanation
Indices: 71120716--71120824 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
71120706 AGCTCAGACG
* *
71120716 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
71120753 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
71120790 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
71120825 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:71121088 original size:100 final size:96
Alignment explanation
Indices: 71120970--71121155 Score: 293
Period size: 100 Copynumber: 1.9 Consensus size: 96
71120960 GCACATCGCC
*
71120970 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACA
*
71121035 TT-GACCATTCGGCTTTACCACATATGCATATCTCA
62 TTAG-CCATTCAGCTTTACCACATATGCATATCTCA
*
71121070 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
71121135 CCATTCAGCTTTACCACATAT
66 CCATTCAGCTTTACCACATAT
71121156 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
96 35 0.43
97 1 0.01
100 46 0.56
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACATATGCATATCTCA
Found at i:71121096 original size:48 final size:48
Alignment explanation
Indices: 71120970--71121156 Score: 286
Period size: 48 Copynumber: 3.8 Consensus size: 48
71120960 GCACATCGCC
*
71120970 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
71121022 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
71121070 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
71121118 TACATATTTCACATTAGCCATTCAGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
71121157 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
48 83 0.65
49 1 0.01
51 1 0.01
52 42 0.33
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:71121262 original size:47 final size:47
Alignment explanation
Indices: 71121126--71121272 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 47
71121116 CATACATATT
* * * * *
71121126 TCACATTAGCCATTCAGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
71121173 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
71121220 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71121267 TCACAT
1 TCACAT
71121273 AAAATCCTAA
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71122827 original size:2 final size:2
Alignment explanation
Indices: 71122820--71122853 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
71122810 TCATGCGCAA
71122820 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71122854 GTGCAAGAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71124658 original size:27 final size:28
Alignment explanation
Indices: 71124628--71124717 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
71124618 TTTAGTTTAC
71124628 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
71124655 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
71124682 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
71124709 TAAAATTAC
1 TAAAATTAC
71124718 TAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:71124726 original size:27 final size:26
Alignment explanation
Indices: 71124652--71124727 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
71124642 TACCCTTAGT
* *
71124652 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
71124679 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
71124706 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
71124728 CTGATTTACA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:71124745 original size:54 final size:53
Alignment explanation
Indices: 71124630--71124746 Score: 123
Period size: 54 Copynumber: 2.2 Consensus size: 53
71124620 TAGTTTACTA
* **
71124630 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCTCGATTTAC
* *
71124683 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACT-AAAGTACCC-CTGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTGAAA-TACCCTC-GATTTAC
71124737 AGAATTACCG
1 A-AATTACCG
71124747 TTTTACCCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
53 12 0.22
54 40 0.74
55 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCTCGATTTAC
Found at i:71124797 original size:81 final size:81
Alignment explanation
Indices: 71124733--71125149 Score: 703
Period size: 81 Copynumber: 5.1 Consensus size: 81
71124723 TACCCCTGAT
71124733 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTA
1 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTA
71124798 TCGTTTTACCCTCGAC
66 TCGTTTTACCCTCGAC
*
71124814 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTATCGTTTTACCCCTGATTTACATAATTA
1 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTA
71124879 TCGTTTTACCCTCGAC
66 TCGTTTTACCCTCGAC
71124895 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTA
1 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTA
71124960 TCGTTTTACCCTCGAC
66 TCGTTTTACCCTCGAC
*
71124976 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCATTTTACCCCTGATTTACATAATTA
1 TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTA
71125041 TCGTTTTACCCTCGAC
66 TCGTTTTACCCTCGAC
* * ** * *
71125057 TTACAGAATTACCGTTTTACCCTTGATTTAC-TGAATTACTATTTTACCCTTGATTTACAGAATT
1 TTACAGAATTACCGTTTTACCCCTAATTTACAT-AATTACCGTTTTACCCCTGATTTACATAATT
* *
71125121 A-CTATTTTACCCTCGAT
65 ATC-GTTTTACCCTCGAC
*
71125138 TTACAAAATTAC
1 TTACAGAATTAC
71125150 TAAAATACCC
Statistics
Matches: 323, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
80 2 0.01
81 321 0.99
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.40
Consensus pattern (81 bp):
TTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATTTACATAATTA
TCGTTTTACCCTCGAC
Found at i:71125151 original size:27 final size:27
Alignment explanation
Indices: 71124723--71125149 Score: 515
Period size: 27 Copynumber: 15.8 Consensus size: 27
71124713 ATTACTAAAG
*
71124723 TACCCCTGATTTACAGAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
71124750 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
71124777 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
71124804 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
* *
71124831 TACCCCTAATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
71124858 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
71124885 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
71124912 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
71124939 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
71124966 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
* *
71124993 TACCCCTAATTTACATAATTACCATTT
1 TACCCCTGATTTACATAATTACCGTTT
*
71125020 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
71125047 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
* **
71125074 TACCCTTGATTTAC-TGAATTACTATTT
1 TACCCCTGATTTACAT-AATTACCGTTT
* * **
71125101 TACCCTTGATTTACAGAATTACTATTT
1 TACCCCTGATTTACATAATTACCGTTT
*
71125128 TA-CCCTCGATTTACAAAATTAC
1 TACCCCT-GATTTACATAATTAC
71125150 TAAAATACCC
Statistics
Matches: 348, Mismatches: 41, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
26 19 0.05
27 314 0.90
28 15 0.04
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCCTGATTTACATAATTACCGTTT
Found at i:71125158 original size:27 final size:27
Alignment explanation
Indices: 71125074--71125298 Score: 134
Period size: 27 Copynumber: 8.3 Consensus size: 27
71125064 ATTACCGTTT
** ***
71125074 TACCCTTGATTTACTGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ***
71125101 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
71125128 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *** *
71125155 TACCCTTGGTTTGTGAAATTATCGAAAA
1 TACCCTTGATTTACAAAATTA-CTAAAA
** ** *
71125183 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * *
71125209 TACCCCTAATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
71125236 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
71125265 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
71125292 TACCCTT
1 TACCCTT
71125299 AGTTTGTAGA
Statistics
Matches: 160, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
26 6 0.04
27 123 0.77
28 12 0.08
29 19 0.12
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:71125421 original size:27 final size:27
Alignment explanation
Indices: 71125357--71125421 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
71125347 ATCCCTATTA
*
71125357 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
71125384 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
71125411 GGTAAAATGAC
1 GGTAAAATGAC
71125422 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:71126610 original size:25 final size:25
Alignment explanation
Indices: 71126581--71126628 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71126571 TTACAATATG
* * *
71126581 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
71126606 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
71126629 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:71126697 original size:20 final size:20
Alignment explanation
Indices: 71126672--71126730 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
71126662 TAAATATGGT
71126672 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
71126692 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
71126712 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
71126731 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:71126808 original size:24 final size:24
Alignment explanation
Indices: 71126781--71126947 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
71126771 GAGGAAGTGA
71126781 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71126805 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71126829 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71126853 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
71126876 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
71126900 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
71126924 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
71126948 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:71126898 original size:71 final size:71
Alignment explanation
Indices: 71126781--71126948 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
71126771 GAGGAAGTGA
71126781 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
71126846 AGTTATC
65 AGTTATC
** *
71126853 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
71126918 GTTATT
66 GTTATC
*
71126924 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
71126949 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:71127174 original size:31 final size:31
Alignment explanation
Indices: 71127139--71127202 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71127129 CGTTTACAGT
*
71127139 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
71127170 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71127201 AA
1 AA
71127203 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71129569 original size:93 final size:93
Alignment explanation
Indices: 71129457--71129627 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71129447 GCCCATAAGT
* *
71129457 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71129522 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71129550 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71129615 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71129628 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71129643 original size:46 final size:46
Alignment explanation
Indices: 71129449--71129629 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
71129439 TGTAACCCGC
* * *
71129449 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
71129495 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
71129545 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
71129588 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
71129630 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:71132043 original size:29 final size:29
Alignment explanation
Indices: 71132004--71132091 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
71131994 CAAAGATAAC
*
71132004 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
71132033 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
71132062 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
71132092 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:71132062 original size:15 final size:15
Alignment explanation
Indices: 71132004--71132082 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
71131994 CAAAGATAAC
*
71132004 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71132018 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
71132033 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
71132047 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
71132062 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
71132077 AAGAAA
1 AAGAAA
71132083 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71132091 original size:15 final size:15
Alignment explanation
Indices: 71132015--71132091 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
71132005 AGAAAACCGA
71132015 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
71132030 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
71132044 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
71132058 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
71132074 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
71132089 ATA
1 ATA
71132092 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:71135152 original size:93 final size:93
Alignment explanation
Indices: 71135040--71135210 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71135030 GCCCATAAGT
* *
71135040 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71135105 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71135133 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71135198 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71135211 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71135226 original size:46 final size:46
Alignment explanation
Indices: 71135032--71135212 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
71135022 TGTAACCCGC
* * *
71135032 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
71135078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
71135128 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
71135171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
71135213 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:71140148 original size:19 final size:20
Alignment explanation
Indices: 71140124--71140161 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71140114 GGTACCACCA
71140124 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
71140143 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
71140162 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:71140506 original size:93 final size:93
Alignment explanation
Indices: 71140391--71140561 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
71140381 GCCCCTAAGT
* * *
71140391 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
71140456 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* * *
71140484 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
71140549 CAAGTTCGGATGC
66 CAAGTTCGGATGC
71140562 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71140558 original size:46 final size:46
Alignment explanation
Indices: 71140386--71140558 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
71140376 AACCCGCCCC
* * * * *
71140386 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
71140432 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
71140480 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
71140525 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71140559 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:71144382 original size:33 final size:34
Alignment explanation
Indices: 71144339--71144409 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 34
71144329 ACAGCGCATG
* *
71144339 CAGTAGCAGTCTAGG-CTAGAGCCCTATTCAGTAA
1 CAGTAGCAGTCTAGGCCT-GAGCCCTATACAGAAA
* *
71144373 CAGTA-CAGTCTGGGCCTTAGCCCTATACAGAAA
1 CAGTAGCAGTCTAGGCCTGAGCCCTATACAGAAA
71144406 CAGT
1 CAGT
71144410 GTGGGCCTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 25 0.78
34 7 0.22
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (34 bp):
CAGTAGCAGTCTAGGCCTGAGCCCTATACAGAAA
Found at i:71144629 original size:27 final size:27
Alignment explanation
Indices: 71144598--71144650 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
71144588 GCTGCCAGAA
71144598 CAGTAAATGTGGCAAAGCCACCAGTAT
1 CAGTAAATGTGGCAAAGCCACCAGTAT
* *
71144625 CAGTAATTGTGGCATAGCCACCAGTA
1 CAGTAAATGTGGCAAAGCCACCAGTA
71144651 ATAGTGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGTAAATGTGGCAAAGCCACCAGTAT
Found at i:71144662 original size:27 final size:26
Alignment explanation
Indices: 71144598--71144682 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
71144588 GCTGCCAGAA
*
71144598 CAGTAAATGTGGCAAAGCCACCAGTAT
1 CAGT-AATGTGGCATAGCCACCAGTAT
71144625 CAGTAATTGTGGCATAGCCACCAGTAAT
1 CAGTAA-TGTGGCATAGCCACCAGT-AT
* * *
71144653 -AGTGAATGTGACATAGTCACCAATA-
1 CAGT-AATGTGGCATAGCCACCAGTAT
71144678 CAGTA
1 CAGTA
71144683 CTTCCTCCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
25 1 0.02
26 6 0.12
27 39 0.78
28 4 0.08
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (26 bp):
CAGTAATGTGGCATAGCCACCAGTAT
Found at i:71144849 original size:27 final size:28
Alignment explanation
Indices: 71144819--71144929 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 28
71144809 GGCATAATTG
* *
71144819 TCATATTA-CCATATAGGGGTATTACGA
1 TCATTTTAGCCATACAGGGGTATTACGA
* *
71144846 TCATTTTA-CCCTACAGGGGTATTACGG
1 TCATTTTAGCCATACAGGGGTATTACGA
* * *
71144873 TCATTTTATCCA-ATAGGGGTATTACGG
1 TCATTTTAGCCATACAGGGGTATTACGA
71144900 TCATTTTAGCC-TACAGGGGTATTACGA
1 TCATTTTAGCCATACAGGGGTATTACGA
71144927 TCA
1 TCA
71144930 GATAACGATT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 71 0.97
28 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (28 bp):
TCATTTTAGCCATACAGGGGTATTACGA
Found at i:71144904 original size:54 final size:54
Alignment explanation
Indices: 71144818--71144925 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
71144808 GGGCATAATT
71144818 GTCATATTACCATATAGGGGTATTACGATCATTTTACCCTACAGGGGTATTACG
1 GTCATATTACCATATAGGGGTATTACGATCATTTTACCCTACAGGGGTATTACG
* * *
71144872 GTCATTTTATCCA-ATAGGGGTATTACGGTCATTTTAGCCTACAGGGGTATTACG
1 GTCATATTA-CCATATAGGGGTATTACGATCATTTTACCCTACAGGGGTATTACG
71144926 ATCAGATAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCATATTACCATATAGGGGTATTACGATCATTTTACCCTACAGGGGTATTACG
Found at i:71145676 original size:17 final size:17
Alignment explanation
Indices: 71145654--71145691 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
71145644 AGCTCGAGAG
71145654 TGAGCATTTAAATGTCA
1 TGAGCATTTAAATGTCA
71145671 TGAGCATTTAAATGTCA
1 TGAGCATTTAAATGTCA
71145688 TGAG
1 TGAG
71145692 ATATGAGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (17 bp):
TGAGCATTTAAATGTCA
Found at i:71148471 original size:94 final size:90
Alignment explanation
Indices: 71148357--71148565 Score: 224
Period size: 94 Copynumber: 2.3 Consensus size: 90
71148347 CGCCAATGTT
*
71148357 AGACATGTTTGGGACATGCATCGGCCAC-ATAATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
1 AGACATATTTGGGACATGCATCGGCCACGA-AATGAGAGCCAGTGTAAGA-CATGTCTGGGACAT
*
71148421 GGCATCGGC-ATTGAGATGAGTGCTAGTGTA
64 -GCATCGGCTA-CGAGAT--GTGCTAGTGTA
* * * * ** *
71148451 AGCCATATTTGGGACATGCATAGGCCTCGAGATGTTAGCCAGTGTCAGACATGTCTGGGACATGC
1 AGACATATTTGGGACATGCATCGGCCACGAAATGAGAGCCAGTGTAAGACATGTCTGGGACATGC
* *
71148516 GTTGGCTACGAGATGTGCTAGTGTA
66 ATCGGCTACGAGATGTGCTAGTGTA
* * *
71148541 AGACATGTCTGGGACATTCATCGGC
1 AGACATATTTGGGACATGCATCGGC
71148566 ACAGTTACAT
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
90 31 0.32
92 11 0.11
93 15 0.15
94 39 0.40
95 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (90 bp):
AGACATATTTGGGACATGCATCGGCCACGAAATGAGAGCCAGTGTAAGACATGTCTGGGACATGC
ATCGGCTACGAGATGTGCTAGTGTA
Found at i:71148495 original size:46 final size:44
Alignment explanation
Indices: 71148394--71148602 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 44
71148384 CATAATGAGA
* * *
71148394 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATAGGCCTCGAGAT--GT
* * * *
71148442 GCTAGTGTAAGCCATATTTGGGACATGCATAGGCCTCGAGATGTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATAGGCCTCGAGATG-T
* * *
71148487 AGCCAGTGTCAGACATGTCTGGGACATGCGTTGG-CTACGAGATGT
1 -GCCAGTGTAAGACATGTCTGGGACATGCATAGGCCT-CGAGATGT
* * * * *
71148532 GCTAGTGTAAGACATGTCTGGGACATTCATCGGCACAGT-TACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATAGGC-C--TCGAGATGT
* *
71148578 GTCAGTGTAAGACTTGTCTGGGACA
1 GCCAGTGTAAGACATGTCTGGGACA
71148603 CGGCATCGAC
Statistics
Matches: 130, Mismatches: 24, Indels: 16
0.76 0.14 0.09
Matches are distributed among these distances:
44 29 0.22
45 4 0.03
46 74 0.57
47 12 0.09
48 11 0.08
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATAGGCCTCGAGATGT
Found at i:71152286 original size:29 final size:29
Alignment explanation
Indices: 71152185--71152278 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
71152175 GTGACGAGAT
*
71152185 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71152214 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71152243 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
71152272 CGGCACT
1 TGGCACT
71152279 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:71152303 original size:58 final size:58
Alignment explanation
Indices: 71152181--71152309 Score: 163
Period size: 58 Copynumber: 2.2 Consensus size: 58
71152171 TACGGTGACG
* *
71152181 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCATGCTCGAA
* * **
71152238 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* *
71152296 GGGTATGGCACTAA
1 AGATATGGCACTAA
71152310 ATGTTCGGGT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:71152366 original size:28 final size:29
Alignment explanation
Indices: 71152332--71152401 Score: 108
Period size: 28 Copynumber: 2.4 Consensus size: 29
71152322 AAAATTGTAC
*
71152332 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-TTGAATACATAT
71152360 AGCACTAAGTGTGCGAGTTGAATACATAT
1 AGCACTAAGTGTGCGAGTTGAATACATAT
71152389 AGCACTAAGTGTG
1 AGCACTAAGTGTG
71152402 TGGATTCACT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 3 0.08
28 19 0.49
29 17 0.44
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTGAATACATAT
Found at i:71155279 original size:68 final size:70
Alignment explanation
Indices: 71155207--71155404 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
71155197 ACACCCTGTA
* * * *
71155207 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
71155269 ATAAAT
65 ATAAAT
*
71155275 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
71155340 ATAAAT
65 ATAAAT
*
71155346 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
71155405 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:71155318 original size:41 final size:41
Alignment explanation
Indices: 71155273--71155390 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
71155263 TGAAAGATAA
71155273 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
71155314 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71155344 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71155385 ATGTAG
1 ATGTAG
71155391 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:71155330 original size:71 final size:71
Alignment explanation
Indices: 71155241--71155404 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71155231 GAGATGTATC
71155241 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71155306 AGGACA
66 AGGACA
71155312 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71155377 AGGACA
66 AGGACA
71155383 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71155405 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71163298 original size:79 final size:80
Alignment explanation
Indices: 71163160--71163338 Score: 193
Period size: 79 Copynumber: 2.2 Consensus size: 80
71163150 TCGTTCAATC
* * *
71163160 GCCTTCGGGACATAGCCCGGATATGGTAACCCGCACCAAGGCCTACGGGACTTAACCCGGATATC
1 GCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACCAAGGCCTACGGGACTTAACCCGGATAT-
* *
71163225 A-CGA-TTGCACAAAT
65 AGCCACTAGCACAAAT
* * * * * * *
71163239 GCCTTCGGGTCTTAGCCCGGATA-GAATGACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATG-ATAACCCGCACCAAGGCCTACGGGACTTAACCCGGATAT
*
71163303 AGCCACTAGCACAATT
65 AGCCACTAGCACAAAT
*
71163319 GCCTTCGGGTCTTAACCCGG
1 GCCTTCGGGTCTTAGCCCGG
71163339 TTATAATTTC
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.02
79 54 0.65
80 27 0.33
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.21
Consensus pattern (80 bp):
GCCTTCGGGTCTTAGCCCGGATATGATAACCCGCACCAAGGCCTACGGGACTTAACCCGGATATA
GCCACTAGCACAAAT
Found at i:71163359 original size:40 final size:40
Alignment explanation
Indices: 71163231--71163382 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
71163221 TATCACGATT
* * **
71163231 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCAC-CA
* *
71163271 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* * ***
71163311 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* * *
71163351 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
71163383 CATTCAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
Found at i:71171352 original size:40 final size:40
Alignment explanation
Indices: 71171300--71171407 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
71171290 TATCACGATT
** *
71171300 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
71171340 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
71171380 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
71171408 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:71179710 original size:28 final size:28
Alignment explanation
Indices: 71179657--71179720 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
71179647 TAGTAAGTTG
* *
71179657 GCACATTTAGTGCTTAATAATCAAACTC
1 GCACACTTAGTGCTTAACAATCAAACTC
*
71179685 GCACACTTAGTG-TTATACAATTAAACTC
1 GCACACTTAGTGCTTA-ACAATCAAACTC
71179713 GCACACTT
1 GCACACTT
71179721 TCTGCCAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 3 0.09
28 29 0.91
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (28 bp):
GCACACTTAGTGCTTAACAATCAAACTC
Found at i:71182155 original size:29 final size:29
Alignment explanation
Indices: 71182122--71182282 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
71182112 GTGACGAGAT
*
71182122 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
71182151 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
71182180 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
71182209 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
71182238 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
71182267 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
71182283 GGCTTAAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:71190086 original size:58 final size:58
Alignment explanation
Indices: 71190012--71190234 Score: 179
Period size: 58 Copynumber: 3.9 Consensus size: 58
71190002 TACGGTGACG
* *
71190012 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGA-GCTCGAA
* * **
71190069 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
* * ** * * * * * *
71190127 GGGTATGGCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-A
1 AGATATGGCACTAAGTGTGCATGCTGAAAA-TATACGGCACTAAGTGTGCGAGCTCGAA
** * *
71190185 TTATATAGCACTAAGTGTGCGA-GTTGAATACATATA--GCACTAAGTGTGCG
1 AGATATGGCACTAAGTGTGC-ATGCTGAA-A-ATATACGGCACTAAGTGTGCG
71190235 GATTCACTAT
Statistics
Matches: 133, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
57 17 0.13
58 90 0.68
59 25 0.19
60 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:71190147 original size:29 final size:29
Alignment explanation
Indices: 71190016--71190146 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
71190006 GTGACGAGAT
*
71190016 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71190045 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71190074 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
71190103 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
71190132 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
71190147 GGGTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:71190203 original size:28 final size:28
Alignment explanation
Indices: 71190134--71190234 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71190124 GAAGGGTATG
* * * *
71190134 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
71190164 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71190192 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
71190221 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71190235 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71192897 original size:16 final size:17
Alignment explanation
Indices: 71192865--71192901 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
71192855 AGCTCGAGAG
71192865 TGAGCATTTAAAAGTCA
1 TGAGCATTTAAAAGTCA
*
71192882 TGAGCA-TTAAATGTCA
1 TGAGCATTTAAAAGTCA
71192898 TGAG
1 TGAG
71192902 ATATGAGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.30
Consensus pattern (17 bp):
TGAGCATTTAAAAGTCA
Found at i:71197655 original size:14 final size:14
Alignment explanation
Indices: 71197624--71197667 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
71197614 TAGAATAAAA
* *
71197624 AAATCGAGAATAAC
1 AAATCGAGAACAAT
*
71197638 AAATTGAGAACAAT
1 AAATCGAGAACAAT
*
71197652 AAATCAAGAACAAT
1 AAATCGAGAACAAT
71197666 AA
1 AA
71197668 GTTGAAAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.61, C:0.11, G:0.11, T:0.16
Consensus pattern (14 bp):
AAATCGAGAACAAT
Found at i:71198866 original size:22 final size:20
Alignment explanation
Indices: 71198834--71198887 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 20
71198824 GTATTCAATA
71198834 ATTTTCAATTAAAAATAATAAAT
1 ATTTT-AATTAAAAAT-A-AAAT
**
71198857 ATTTTAATTAATTATAAAAT
1 ATTTTAATTAAAAATAAAAT
71198877 ATTTTAATTAA
1 ATTTTAATTAA
71198888 TATTAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 15 0.52
21 1 0.03
22 8 0.28
23 5 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTTTAATTAAAAATAAAAT
Found at i:71198899 original size:20 final size:19
Alignment explanation
Indices: 71198847--71198895 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
71198837 TTCAATTAAA
*
71198847 AATAATAAATATTTTAATT
1 AATATTAAATATTTTAATT
*
71198866 AATTATAAAATATTTTAATT
1 AA-TATTAAATATTTTAATT
71198886 AATATTAAAT
1 AATATTAAAT
71198896 TATTATAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATATTAAATATTTTAATT
Found at i:71198914 original size:30 final size:30
Alignment explanation
Indices: 71198862--71198918 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
71198852 TAAATATTTT
*
71198862 AATTAATTATAAAATATTTTAATTAATATTA
1 AATTAATTATAAAATATATTAA-TAATATTA
* *
71198893 AATT-ATTATAAATTGTATTAATAATA
1 AATTAATTATAAAATATATTAATAATA
71198919 AATCATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 5 0.22
30 14 0.61
31 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (30 bp):
AATTAATTATAAAATATATTAATAATATTA
Found at i:71199024 original size:40 final size:40
Alignment explanation
Indices: 71198969--71199048 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
71198959 AGAAGATACA
71198969 CATATAGTCACAATTGTAATTACAAACAATATATTCGAAT
1 CATATAGTCACAATTGTAATTACAAACAATATATTCGAAT
71199009 CATATAGTCACAATTGTAATTACAAACAATATATTCGAAT
1 CATATAGTCACAATTGTAATTACAAACAATATATTCGAAT
71199049 AACTATAACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (40 bp):
CATATAGTCACAATTGTAATTACAAACAATATATTCGAAT
Found at i:71199776 original size:72 final size:72
Alignment explanation
Indices: 71199647--71199785 Score: 185
Period size: 72 Copynumber: 1.9 Consensus size: 72
71199637 GGGAGAAGTA
** *
71199647 AAAAATTTTGGGGAAAAGTAAAAGAAAAAGTTTTGGGGGGTTTGGGGGAAGTAAAATTTTTT-AG
1 AAAAATTTTGGGGAAAAGTAAAAGAAAAAGTTTTGGGGAATTTGGGAGAAGTAAAATTTTTTGAG
71199711 GGTTAGT
66 GGTTAGT
* *
71199718 AAAAGTTTTGGGGTGAAAGTAAAAGAAAAAAGTTTT-GGGAATTTGAGGAGAAGT-AAATTTTTT
1 AAAAATTTTGGGG-AAAAGTAAAAG-AAAAAGTTTTGGGGAATTTG-GGAGAAGTAAAATTTTTT
71199781 GAGGG
63 GAGGG
71199786 GAAAAGTAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
71 12 0.20
72 26 0.44
73 21 0.36
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (72 bp):
AAAAATTTTGGGGAAAAGTAAAAGAAAAAGTTTTGGGGAATTTGGGAGAAGTAAAATTTTTTGAG
GGTTAGT
Found at i:71200530 original size:16 final size:16
Alignment explanation
Indices: 71200509--71200542 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
71200499 ATCTGCATAT
71200509 AATAAACATAAATTAA
1 AATAAACATAAATTAA
*
71200525 AATAAATATAAATTAA
1 AATAAACATAAATTAA
71200541 AA
1 AA
71200543 ATCCACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAAACATAAATTAA
Found at i:71208337 original size:56 final size:56
Alignment explanation
Indices: 71208262--71208869 Score: 753
Period size: 56 Copynumber: 10.8 Consensus size: 56
71208252 AAAAAAAATT
*
71208262 AAAAACTCGTATTTTGGTGCCGGCCATTAACAGGCCAGCACCAAATTTTTTTTTTA
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTA
* * * ***
71208318 AAAAACTCGTATTTTGGTGCTGGCCATTGACAGGCCAACACCAAAATTTTTTAAAA
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTA
*
71208374 AAAAACTCATATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAA-TTTTTTTTTA
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTA
* * * *
71208429 AAAAACTTGTATTTTGGTGCCGACCATTGACAGGCAAGCACCAAATAATTTTTTTT-
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAAT-TTTTTTTTTA
* * * * *
71208485 AAAAACCCGTATTTTTGTGCCGGTCATTGACAGGACAACACCAAA--TTTTTTTTA
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTA
* * *
71208539 AAAAACTTGTATTTTGGTGCCGACCATTGACAGGCCAACACCAAATAATTTTTTTTT-
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAAT--TTTTTTTTTA
* * ** *
71208596 AAAAACCCGTATTTTGGTGCCAGCCATTGTTAGGCCAGCACCAAATTCTTTTTTTTTT
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAA-T-TTTTTTTTTA
* * * * * *
71208654 AAAAACTCGTATTATGGTGCCGCCCATTGACATGCTAGCACTAAATAAAATTTTTTTT-
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAAT---TTTTTTTTTA
*
71208712 AAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCA-CAAATTTTTTTTTTAA
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTT-A
* *
71208768 AAGAAACTCGTATTTTGGTGTCGGCCATTGACATGCCAGCACCAAATTTTTTTTTTA
1 AA-AAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTA
* *
71208825 AAAAACTCGTATTTTGGTGCCGGCTATTGACAAGCCAGCACCAAA
1 AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAA
71208870 AAAATTTGAA
Statistics
Matches: 473, Mismatches: 64, Indels: 30
0.83 0.11 0.05
Matches are distributed among these distances:
53 8 0.02
54 47 0.10
55 48 0.10
56 170 0.36
57 98 0.21
58 94 0.20
59 8 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (56 bp):
AAAAACTCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTA
Found at i:71208461 original size:111 final size:110
Alignment explanation
Indices: 71208260--71208869 Score: 735
Period size: 111 Copynumber: 5.4 Consensus size: 110
71208250 TAAAAAAAAA
* *
71208260 TTAAAAACTCGTATTTTGGTGCCGGCCATTAACAGGCCAGCACCAAATTTTTTTTTTAAAAAACT
1 TTAAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTAAAAAACT
* *
71208325 CGTATTTTGGTGCTGGCCATTGACAGGCCAACACCAAAATTTTTT
66 CGTATTTTGGTGCCGACCATTGACAGGCCAACACCAAAATTTTTT
** * *
71208370 AAAAAAAAACTCATATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAA-TTTTTTTTTAAAAAA
1 --TTAAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTAAAAAA
*
71208434 CTTGTATTTTGGTGCCGACCATTGACAGG-CAAGCACCAAATAATTTTTT
64 CTCGTATTTTGGTGCCGACCATTGACAGGCCAA-CACC-AA-AATTTTTT
* * * *
71208483 TTAAAAACCCGTATTTTTGTGCCGGTCATTGACAGGACAACACCAAA--TTTTTTTTAAAAAACT
1 TTAAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTAAAAAACT
*
71208546 TGTATTTTGGTGCCGACCATTGACAGGCCAACACCAAATAATTTTTTT
66 CGTATTTTGGTGCCGACCATTGACAGGCCAACACC-AA-AA-TTTTTT
* ** *
71208594 TTAAAAACCCGTATTTTGGTGCCAGCCATTGTTAGGCCAGCACCAAATTCTTTTTTTTTTAAAAA
1 TTAAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAA-T-TTTTTTTTTAAAAAA
* * * * **
71208659 CTCGTATTATGGTGCCGCCCATTGACATGCTAGCACTAAATAAAATTTTTT
64 CTCGTATTTTGGTGCCGACCATTGACAGGCCA--AC--ACCAAAATTTTTT
71208710 TTAAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCA-CAAATTTTTTTTTTAAAAGAAA
1 TTAAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTT-AAA-AAA
* * * * *
71208774 CTCGTATTTTGGTGTCGGCCATTGACATGCCAGCACCAAATTTTTTTT
64 CTCGTATTTTGGTGCCGACCATTGACAGGCCAACACCAAA-ATTTTTT
* * *
71208822 TTAAAAAACTCGTATTTTGGTGCCGGCTATTGACAAGCCAGCACCAAA
1 TT-AAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAA
71208870 AAAATTTGAA
Statistics
Matches: 435, Mismatches: 45, Indels: 34
0.85 0.09 0.07
Matches are distributed among these distances:
110 56 0.13
111 137 0.31
112 53 0.12
113 55 0.13
114 7 0.02
115 75 0.17
116 45 0.10
117 4 0.01
118 2 0.00
119 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (110 bp):
TTAAAAACCCGTATTTTGGTGCCGGCCATTGACAGGCCAGCACCAAATTTTTTTTTTAAAAAACT
CGTATTTTGGTGCCGACCATTGACAGGCCAACACCAAAATTTTTT
Found at i:71214161 original size:16 final size:16
Alignment explanation
Indices: 71214140--71214184 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
71214130 AATATATATT
71214140 TAAAATTTTTATATAA
1 TAAAATTTTTATATAA
*
71214156 TAAAA-TTTTA-AAAA
1 TAAAATTTTTATATAA
71214170 TAATAATTTTTATAT
1 TAA-AATTTTTATAT
71214185 CTCAATGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 6 0.25
15 7 0.29
16 10 0.42
17 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAAAATTTTTATATAA
Found at i:71221382 original size:44 final size:44
Alignment explanation
Indices: 71221310--71221416 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 44
71221300 TAAGAACTCA
*
71221310 CACACTTAGTG-CATCAGTGA-TTAGCCGAAGCTAT-AATGATCTCG
1 CACACTTAGTGCCATCA-T-ATTTAACCGAAGCTATCAATG-TCTCG
** *
71221354 CACACTTAGTGCCATCATATTTAACCGAAGCTATCTCTGTGTCG
1 CACACTTAGTGCCATCATATTTAACCGAAGCTATCAATGTCTCG
71221398 CACACTTAGTGCC-TCATAT
1 CACACTTAGTGCCATCATAT
71221417 AGCCAAAGCT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
43 7 0.12
44 42 0.75
45 7 0.12
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
CACACTTAGTGCCATCATATTTAACCGAAGCTATCAATGTCTCG
Found at i:71229297 original size:17 final size:17
Alignment explanation
Indices: 71229275--71229307 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
71229265 TCAATTCAAT
71229275 CATTTATCGGGATTTAA
1 CATTTATCGGGATTTAA
*
71229292 CATTTATCGGGCTTTA
1 CATTTATCGGGATTTA
71229308 TTGGATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (17 bp):
CATTTATCGGGATTTAA
Found at i:71239741 original size:58 final size:58
Alignment explanation
Indices: 71239667--71239889 Score: 179
Period size: 58 Copynumber: 3.9 Consensus size: 58
71239657 TACGGTGACG
* *
71239667 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGA-GCTCGAA
* * **
71239724 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
* * ** * * * * * *
71239782 GGGTATGGCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-A
1 AGATATGGCACTAAGTGTGCATGCTGAAAA-TATACGGCACTAAGTGTGCGAGCTCGAA
** * *
71239840 TTATATAGCACTAAGTGTGCGA-GTTGAATACATATA--GCACTAAGTGTGCG
1 AGATATGGCACTAAGTGTGC-ATGCTGAA-A-ATATACGGCACTAAGTGTGCG
71239890 GATTCACTAT
Statistics
Matches: 133, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
57 17 0.13
58 90 0.68
59 25 0.19
60 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:71239802 original size:29 final size:29
Alignment explanation
Indices: 71239671--71239801 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
71239661 GTGACGAGAT
*
71239671 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71239700 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71239729 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
71239758 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
71239787 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
71239802 GGGTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:71239858 original size:28 final size:28
Alignment explanation
Indices: 71239789--71239889 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71239779 GAAGGGTATG
* * * *
71239789 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
71239819 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71239847 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
71239876 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71239890 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71247636 original size:58 final size:58
Alignment explanation
Indices: 71247562--71247784 Score: 179
Period size: 58 Copynumber: 3.9 Consensus size: 58
71247552 TACGGTGACG
* *
71247562 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGA-GCTCGAA
* * **
71247619 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
* * ** * * * * * *
71247677 GGGTATGGCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-A
1 AGATATGGCACTAAGTGTGCATGCTGAAAA-TATACGGCACTAAGTGTGCGAGCTCGAA
** * *
71247735 TTATATAGCACTAAGTGTGCGA-GTTGAATACATATA--GCACTAAGTGTGCG
1 AGATATGGCACTAAGTGTGC-ATGCTGAA-A-ATATACGGCACTAAGTGTGCG
71247785 GATTCACTAT
Statistics
Matches: 133, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
57 17 0.13
58 90 0.68
59 25 0.19
60 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:71247697 original size:29 final size:29
Alignment explanation
Indices: 71247566--71247696 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
71247556 GTGACGAGAT
*
71247566 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71247595 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
71247624 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
71247653 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
71247682 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
71247697 GGGTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:71247753 original size:28 final size:28
Alignment explanation
Indices: 71247684--71247784 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71247674 GAAGGGTATG
* * * *
71247684 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
71247714 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71247742 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
71247771 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71247785 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71251961 original size:51 final size:47
Alignment explanation
Indices: 71251867--71252061 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
71251857 TTAGGATTTT
** *
71251867 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
71251914 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
* *
71251965 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
71252012 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
71252059 ATG
1 ATG
71252062 CGAAATGTGT
Statistics
Matches: 133, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
47 84 0.63
49 10 0.08
51 39 0.29
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:71251978 original size:98 final size:94
Alignment explanation
Indices: 71251867--71252061 Score: 300
Period size: 98 Copynumber: 2.0 Consensus size: 94
71251857 TTAGGATTTT
* * * *
71251867 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
71251932 TGTATATATATGCGTGATAAGGCCGAATGGCCA
66 TG--TATATAT--GTGATAAGGCCGAATGGCCA
71251965 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
71252030 TGTATATATGTGGTAAGGCCGAATGGCTA
66 TGTATATATGTGATAAGGCCGAATGGCCA
71252059 ATG
1 ATG
71252062 CGAAATGTGT
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
94 21 0.23
96 7 0.08
98 63 0.69
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGTATATATGTGATAAGGCCGAATGGCCA
Found at i:71252171 original size:46 final size:46
Alignment explanation
Indices: 71252035--71252171 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
71252025 GAACATGTAT
* *
71252035 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
71252081 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
71252127 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
71252172 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:71252408 original size:36 final size:37
Alignment explanation
Indices: 71252327--71252427 Score: 150
Period size: 36 Copynumber: 2.8 Consensus size: 37
71252317 ATCCAGGATT
* **
71252327 TAAGGCCCGATGACTATATGTGGAGATTATGTCCGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
*
71252364 TAAAACCCGATGACTACGTGTGGAGATTATG-CCGGG
1 TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
*
71252400 TAAGACCCGATGACTTCGTGTGGAGATT
1 TAAGACCCGATGACTACGTGTGGAGATT
71252428 TCGTCTGAGC
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 31 0.53
37 27 0.47
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TAAGACCCGATGACTACGTGTGGAGATTATGTCCGGG
Found at i:71254130 original size:39 final size:39
Alignment explanation
Indices: 71254087--71254340 Score: 393
Period size: 39 Copynumber: 6.5 Consensus size: 39
71254077 GTGTGAGATA
* * * *
71254087 TATATCCGGGCTAATTCCTGAAGGCGTTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
71254126 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
71254165 TATATCCGGGCTAAGTCTCAAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
71254204 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
71254243 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
71254282 TATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
71254320 TATATCCGGGCTTAAAGTCCC
1 TATATCCGGGC-T-AAGTCCC
71254341 ACATGCTTTG
Statistics
Matches: 201, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
38 22 0.11
39 172 0.86
40 7 0.03
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:71256434 original size:47 final size:47
Alignment explanation
Indices: 71256174--71256414 Score: 428
Period size: 47 Copynumber: 5.1 Consensus size: 47
71256164 GATTTTATGA
*
71256174 GATGACTGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
71256221 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
71256268 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
71256315 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
71256362 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
71256409 GATGAA
1 GATGAA
71256415 CGTGGAAGTG
Statistics
Matches: 185, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 185 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:71256493 original size:46 final size:46
Alignment explanation
Indices: 71256441--71256614 Score: 267
Period size: 46 Copynumber: 3.7 Consensus size: 46
71256431 TGTGGCGAAT
71256441 CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAG
1 CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAG
71256487 CCGAATGGCTAATGCGAAACGTGTATGAGATGGACGGATATGAGGTAAAG
1 CCGAATGGCTAATGCGAAACGTGTATGAGATGGA---A-ATGAGGTAAAG
*
71256537 CCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAG
1 CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAG
* * **
71256583 CCGAATGGCTAATGTGAGATATGTATGAGATG
1 CCGAATGGCTAATGCGAAACGTGTATGAGATG
71256615 TGTATATATA
Statistics
Matches: 119, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
46 73 0.61
49 1 0.01
50 45 0.38
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.22
Consensus pattern (46 bp):
CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAG
Found at i:71256592 original size:96 final size:96
Alignment explanation
Indices: 71256441--71256614 Score: 303
Period size: 96 Copynumber: 1.8 Consensus size: 96
71256431 TGTGGCGAAT
71256441 CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAGCCGAATGGCTAATGCGAAA
1 CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAGCCGAATGGCTAATGCGAAA
*
71256506 CGTGTATGAGATGGACGGATATGAGGTAAAG
66 CATGTATGAGATGGACGGATATGAGGTAAAG
* * *
71256537 CCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCGAATGGCTAATGTGAGA
1 CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAGCCGAATGGCTAATGCGAAA
*
71256602 TATGTATGAGATG
66 CATGTATGAGATG
71256615 TGTATATATA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.22
Consensus pattern (96 bp):
CCGAATGGCTAATGCGAAACGTGTATGAGATGGAAATGAGGTAAAGCCGAATGGCTAATGCGAAA
CATGTATGAGATGGACGGATATGAGGTAAAG
Found at i:71260734 original size:27 final size:27
Alignment explanation
Indices: 71260675--71260853 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
71260665 TTTGGTTTAC
71260675 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* ** * *
71260701 AAAATTACTAAAATACCATTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
71260728 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
71260755 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
71260782 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
71260809 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
71260836 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
71260854 TCGACCTGTA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 14 0.10
27 121 0.89
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:71260864 original size:81 final size:81
Alignment explanation
Indices: 71260675--71260907 Score: 233
Period size: 81 Copynumber: 2.9 Consensus size: 81
71260665 TTTGGTTTAC
* * ** * *
71260675 AAAATTACCAAAATA-CCC-TGCTTTGTAAAATTA-CTAAAATACCATTGGTTTATAAAATTACC
1 AAAATTACCAAAATACCCCGAGC-CTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACC
*
71260737 AAAATACCCCTAGTTTGT
64 AAAATACCCCTAATTTGT
* **
71260755 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
71260820 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
* ** ** * *
71260836 GAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACC
1 AAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACC
*
71260899 AAAGTACCC
64 AAAATACCC
71260908 TCGATTTATA
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 20 0.15
81 106 0.82
82 4 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:71260867 original size:27 final size:27
Alignment explanation
Indices: 71260837--71260911 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
71260827 CTAATTTGTG
71260837 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
71260864 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
71260891 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
71260912 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:71260922 original size:27 final size:27
Alignment explanation
Indices: 71260903--71261248 Score: 399
Period size: 27 Copynumber: 12.8 Consensus size: 27
71260893 ATTACCAAAG
71260903 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
71260930 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
71260957 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * **
71260984 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
71261011 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
71261038 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
71261065 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
71261092 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
71261119 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
71261146 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
71261173 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
71261200 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
71261227 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
71261249 TAAAATACCC
Statistics
Matches: 287, Mismatches: 30, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
26 1 0.00
27 285 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:71260923 original size:54 final size:54
Alignment explanation
Indices: 71260727--71261034 Score: 153
Period size: 54 Copynumber: 5.7 Consensus size: 54
71260717 CATTGGTTTA
* * * * * * *
71260727 TAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTG
* * * * * * * *
71260781 TAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GACTTG
* * ** * * **
71260835 TGAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTG
1 TAAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
*** *
71260889 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTG
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
**** *** *
71260943 TAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AATT-
1 TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
* ***
71260995 TACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 TA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCG
71261035 TTTTACCCCT
Statistics
Matches: 215, Mismatches: 32, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
52 2 0.01
53 7 0.03
54 199 0.93
55 7 0.03
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (54 bp):
TAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTG
Found at i:71261273 original size:54 final size:53
Alignment explanation
Indices: 71260903--71261312 Score: 176
Period size: 54 Copynumber: 7.6 Consensus size: 53
71260893 ATTACCAAAG
* * **** * * *
71260903 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTAT-AAATTACTGTTT
* * **** ** * *
71260957 TACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACTGTTT
* * **** * * * **
71261011 TACCCTCGATTTATAGAATTACCGTTTTACCCCTAATTTACATAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACTGTTT
* * **** * *
71261065 TACCC-CAGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACT-GTTT
* *** * *
71261119 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATA-AATTACTGTTT
* ***** *
71261173 TACCCTTGATTTACAAAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTA-TAAATTACTGTTT
* * * * **
71261227 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTGAAATTACCGTAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTAT-AAATTACTGTTT
* ** *
71261281 TACCCTCAATTTGTAAAACTACCAAAATACCC
1 TACCCTCGATTTACAAAATTACCAAAATACCC
71261313 CTGTATGGTA
Statistics
Matches: 303, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.01
54 298 0.98
55 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTATAAATTACTGTTT
Found at i:71261285 original size:81 final size:81
Alignment explanation
Indices: 71260930--71261292 Score: 257
Period size: 81 Copynumber: 4.5 Consensus size: 81
71260920 ATTACCGTTT
* ** ** * * * *
71260930 TACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTTGATTTACAAAATTACCGTAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* ***
71260995 TACAGAATTACTATTT
66 TACAAAATTACTAAAA
* * * ** * *
71261011 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCATTTTACCC-CAGA
1 TACCCTTGATTTACAAAATTACCGTAATACCCTC-GATTTACAAAATTACCATTTTACCCTC-GA
* **
71261074 TTTACATAATTATCGT--TT
64 TTTACAAAATTA-C-TAAAA
* * * ** *
71261092 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCGTAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* * ***
71261157 TATAGAATTACTATTT
66 TACAAAATTACTAAAA
* ** * **
71261173 TACCCTTGATTTACAAAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCGTAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
71261238 TACAAAATTACTAAAA
66 TACAAAATTACTAAAA
* *** *
71261254 TACCCTTGGTTTGTGAAATTACCGTAATACCCTCAATTT
1 TACCCTTGATTTACAAAATTACCGTAATACCCTCGATTT
71261293 GTAAAACTAC
Statistics
Matches: 238, Mismatches: 36, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.00
80 3 0.01
81 230 0.97
82 3 0.01
83 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACCGTAATACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
TACAAAATTACTAAAA
Found at i:71262516 original size:25 final size:25
Alignment explanation
Indices: 71262488--71262535 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
71262478 TTATACCATG
* *
71262488 AAAATGACCGTTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
71262513 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
71262536 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:71262638 original size:20 final size:20
Alignment explanation
Indices: 71262578--71262638 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
71262568 ATAAATATGG
*
71262578 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
71262598 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
71262618 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
71262638 T
1 T
71262639 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:71262715 original size:24 final size:24
Alignment explanation
Indices: 71262688--71262831 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
71262678 GAGGAAGTGA
71262688 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71262712 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71262736 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
71262760 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * *
71262784 GAAAGGGCTTTTACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
71262808 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
71262832 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
24 99 0.90
25 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:71263057 original size:31 final size:31
Alignment explanation
Indices: 71263022--71263085 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71263012 CGTTTACAGT
71263022 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
71263053 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71263084 AA
1 AA
71263086 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71264204 original size:37 final size:36
Alignment explanation
Indices: 71264151--71264240 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 36
71264141 TATAAAAGAA
71264151 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
*
71264188 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
71264224 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
71264241 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 11 0.22
37 38 0.78
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:71264391 original size:49 final size:49
Alignment explanation
Indices: 71264336--71264599 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
71264326 TTTTACATTA
71264336 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
71264385 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71264434 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
71264483 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
71264532 GCCTTTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71264581 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
71264600 CATATATGTA
Statistics
Matches: 207, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 207 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:71269645 original size:39 final size:39
Alignment explanation
Indices: 71269613--71269906 Score: 358
Period size: 39 Copynumber: 7.5 Consensus size: 39
71269603 TGTGTGAGAT
* *
71269613 ATATATCCGGGCTAATTCCTGAAGGCGTTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
* * **
71269652 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
* * * *
71269691 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
* * *
71269730 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
* * *
71269769 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
* * *
71269808 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
* *
71269847 TTATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTGGT-
1 ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
71269884 ATTATATCCGGGCTTAAAGTCCC
1 A-TATATCCGGGC-T-AAGTCCC
71269907 ACATGCTTTG
Statistics
Matches: 239, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
38 20 0.08
39 212 0.89
40 7 0.03
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
ATATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTGGTG
Found at i:71269924 original size:78 final size:78
Alignment explanation
Indices: 71269614--71269906 Score: 480
Period size: 78 Copynumber: 3.7 Consensus size: 78
71269604 GTGTGAGATA
* * * *
71269614 TATATCCGGGCTAATTCCTGAAGGCGTTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
*
71269679 TTCATGCTGGTGT
66 TTCGTGCTGGTGT
*
71269692 TATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
71269757 TTCGTGCTGGTGT
66 TTCGTGCTGGTGT
71269770 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
71269835 TTCGTGCTGGTGT
66 TTCGTGCTGGTGT
* * *
71269848 TATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTATTATATCCGGGCTTAAAGTCCC
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCC
71269907 ACATGCTTTG
Statistics
Matches: 203, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
77 22 0.11
78 174 0.86
79 7 0.03
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.30
Consensus pattern (78 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCTGGTGT
Found at i:71269924 original size:117 final size:117
Alignment explanation
Indices: 71269614--71269906 Score: 489
Period size: 117 Copynumber: 2.5 Consensus size: 117
71269604 GTGTGAGATA
* * *
71269614 TATATCCGGGCTAATTCCTGAAGGCGTTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
* *
71269679 TTCATGCTGGTGTTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGT
66 TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
71269731 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
71269796 TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
66 TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
71269848 TATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTATTATATCCGGGCTTAAAGTCCC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGC-T-AAGTCCC
71269907 ACATGCTTTG
Statistics
Matches: 165, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
116 22 0.13
117 136 0.82
118 7 0.04
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.30
Consensus pattern (117 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:71276487 original size:40 final size:38
Alignment explanation
Indices: 71276343--71276495 Score: 155
Period size: 38 Copynumber: 3.9 Consensus size: 38
71276333 GTGTGAGATA
* * *
71276343 TATATCCGGGCTAATTCCTGAAGGCGTTT-TGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
* * * * *
71276381 TATATCCGGTCTAAATCCCGAAGGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
71276420 TATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTAT
* * * *
71276458 TATATCTGGGCTTAAAGTCCCGCATGCTTTGTGGTGGT
1 TATATCCGGGC-T-AAGTCCCGAAGGCTTTGTGCTGGT
71276496 GATTGAATTT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 44 0.45
39 32 0.33
40 21 0.22
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.34
Consensus pattern (38 bp):
TATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTAT
Found at i:71291614 original size:42 final size:42
Alignment explanation
Indices: 71291465--71291633 Score: 173
Period size: 42 Copynumber: 4.0 Consensus size: 42
71291455 ATCACATAAG
* * * *
71291465 CTCATACAATGCC-ATATCCCAGATATGGTCTTACATGTTAT
1 CTCATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
* * * * *
71291506 CACATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAAT
1 CTCATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
* * *
71291549 C-AATTAACGATGCCAATGT-CCAGACATGGTCTTATACGTAAT
1 CTCA-T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
*
71291591 CTCATACAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 CTCATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
71291633 C
1 C
71291634 ACATCTCGAT
Statistics
Matches: 104, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
41 17 0.16
42 51 0.49
43 35 0.34
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (42 bp):
CTCATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
Found at i:71305657 original size:40 final size:40
Alignment explanation
Indices: 71305602--71305771 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
71305592 GAACATTGAA
71305602 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
71305642 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
71305682 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
71305721 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
71305762 CTATATCCGG
1 ATATATCCGG
71305772 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:71307621 original size:14 final size:14
Alignment explanation
Indices: 71307602--71307631 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71307592 AAGAGAGAAT
*
71307602 GATGATGGATGAGG
1 GATGATGAATGAGG
71307616 GATGATGAATGAGG
1 GATGATGAATGAGG
71307630 GA
1 GA
71307632 ATGAAAGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.20
Consensus pattern (14 bp):
GATGATGAATGAGG
Found at i:71310759 original size:27 final size:27
Alignment explanation
Indices: 71310729--71310817 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
71310719 AAAATTTCTA
71310729 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
71310756 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
71310783 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
71310810 AGATACCC
1 AAATACCC
71310818 TCGTGGGGTA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:71310826 original size:27 final size:27
Alignment explanation
Indices: 71310729--71310833 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
71310719 AAAATTTCTA
71310729 AAATACCC-CTGTAGGGTAGAATTACTG
1 AAATACCCTC-GTAGGGTAGAATTACTG
** * *
71310756 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCTCGTAGGGTAGAATTACTG
71310783 AAATACCC-CTGTAGGGTAGAATTACTG
1 AAATACCCTC-GTAGGGTAGAATTACTG
* * *
71310810 AGATACCCTCGTGGGGTAAAATTA
1 AAATACCCTCGTAGGGTAGAATTA
71310834 TCATTTTGCC
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
27 63 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCTCGTAGGGTAGAATTACTG
Found at i:71310827 original size:54 final size:53
Alignment explanation
Indices: 71310729--71310831 Score: 161
Period size: 54 Copynumber: 1.9 Consensus size: 53
71310719 AAAATTTCTA
*
71310729 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCTCATAGGGTA-AAATACCG
* * *
71310783 AAATACCCCTGTAGGGTAGAATTACTGAGATACCCTCGTGGGGTAAAAT
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCTCATAGGGTAAAAT
71310832 TATCATTTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.09
54 41 0.91
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.24
Consensus pattern (53 bp):
AAATACCCCTGTAGGGTAGAATTACTGAAATACCCTCATAGGGTAAAATACCG
Found at i:71311195 original size:22 final size:22
Alignment explanation
Indices: 71311163--71311221 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
71311153 CCCGTTATCG
*
71311163 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
71311185 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
71311207 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
71311222 ACATATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:71313639 original size:27 final size:27
Alignment explanation
Indices: 71313543--71313640 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
71313533 TTAGTTTACC
* * *
71313543 AAATTACTGAAATAACCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
*
71313570 AAATTAC-CAAAGTACCC-CTGATTTATA
1 AAATTACTGAAA-TACCCTC-GATTTATA
* * ***
71313597 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTATA
71313624 AAATTACTGAAATACCC
1 AAATTACTGAAATACCC
71313641 CTGTAGGGTA
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
26 4 0.08
27 48 0.91
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTATA
Found at i:71313655 original size:27 final size:27
Alignment explanation
Indices: 71313625--71313738 Score: 142
Period size: 27 Copynumber: 4.2 Consensus size: 27
71313615 CGATTTATAA
71313625 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71313652 AATTACGGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71313679 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71313706 AATTACCT-AGATA-CCCTCGTAGGGTAA
1 AATTA-CTGAAATACCCCT-GTAGGGTAG
71313733 AATTAC
1 AATTAC
71313739 CATTTTTCCC
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.07
27 70 0.92
28 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:71313667 original size:54 final size:54
Alignment explanation
Indices: 71313622--71313739 Score: 164
Period size: 54 Copynumber: 2.2 Consensus size: 54
71313612 CCTCGATTTA
* * *
71313622 TAAAATTACTGAAATACCCCTGTAGGGTAGAATTACGGAAATACCCTTGTAGGG
1 TAAAAATACCGAAATACCCCTGTAGGGTAGAATTACGGAAATACCCTCGTAGGG
* ** *
71313676 TAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCTAGATACCCTCGTAGGG
1 TAAAAATACCGAAATACCCCTGTAGGGTAGAATTACGGAAATACCCTCGTAGGG
*
71313730 TAAAATTACC
1 TAAAAATACC
71313740 ATTTTTCCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
TAAAAATACCGAAATACCCCTGTAGGGTAGAATTACGGAAATACCCTCGTAGGG
Found at i:71313750 original size:54 final size:54
Alignment explanation
Indices: 71313632--71313735 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
71313622 TAAAATTACT
* *
71313632 GAAATACCCCTGTAGGGTAGAATTACGGAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTCGTAGGGTAGAAATACC
* *
71313686 GAAATACCCCTGTAGGGTAGAATTACCTAGATACCCTCGTAGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTCGTAGGGTAGAAAT
71313736 TACCATTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.09
54 42 0.91
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTCGTAGGGTAGAAATACC
Found at i:71313902 original size:16 final size:16
Alignment explanation
Indices: 71313881--71313911 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71313871 CAAATATGGG
*
71313881 CATGACATTTTGCATA
1 CATGACATGTTGCATA
71313897 CATGACATGTTGCAT
1 CATGACATGTTGCAT
71313912 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:71314360 original size:28 final size:26
Alignment explanation
Indices: 71314310--71314384 Score: 78
Period size: 28 Copynumber: 2.8 Consensus size: 26
71314300 TAAGTGGTTT
* * *
71314310 TGCCACATTATTTGATTCTGGTGGCTA
1 TGCCACAATATCTG-TTCTGGTGACTA
*
71314337 TGCCACAAATATCTGTATCTGGTGACTC
1 TGCCAC-AATATCTGT-TCTGGTGACTA
*
71314365 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
71314385 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.12
27 16 0.39
28 20 0.49
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTA
Found at i:71319871 original size:23 final size:23
Alignment explanation
Indices: 71319820--71319907 Score: 83
Period size: 23 Copynumber: 3.8 Consensus size: 23
71319810 AGCTCCTCCT
* *
71319820 GAGCTGATGAACAGTAAGCTCTATT
1 GAGCTGA--AACAGTAAGCTATATC
71319845 GAGCTGAAATC-GTAAGCTATATC
1 GAGCTGAAA-CAGTAAGCTATATC
*
71319868 GAGCTG-AACAGCAAGCTCATA-C
1 GAGCTGAAACAGTAAGCT-ATATC
*
71319890 GAGCTGAAACGGTAAGCT
1 GAGCTGAAACAGTAAGCT
71319908 CCAATGAGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
21 1 0.02
22 15 0.28
23 30 0.56
24 1 0.02
25 7 0.13
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTATATC
Found at i:71330626 original size:40 final size:40
Alignment explanation
Indices: 71330578--71330783 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
71330568 GGACTAAGAT
* *
71330578 CCGAAGGCATTTGTGCTAGTGATTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
71330618 CCGAAGGCATTTGCGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
71330658 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
71330698 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
71330738 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
71330777 CCGAAGG
1 CCGAAGG
71330784 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.09
40 139 0.90
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:71338559 original size:40 final size:40
Alignment explanation
Indices: 71338511--71338716 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
71338501 GGACTAAGAT
*
71338511 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
71338551 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
71338591 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
71338631 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
71338671 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
71338710 CCGAAGG
1 CCGAAGG
71338717 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.09
40 142 0.90
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:71344047 original size:66 final size:67
Alignment explanation
Indices: 71343970--71344127 Score: 273
Period size: 71 Copynumber: 2.3 Consensus size: 67
71343960 CGAGATGTAT
71343970 CATGTAGACAAGAGAGCTACGTGAAAG-TGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGAC
1 CATGTAGACAAGAGAGCTACGTGAAAGATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGAC
71344034 AC
66 AC
71344036 CATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAA
1 CATGTAGACAAGAGAGCTACGTGAAAG----ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAA
71344101 GGACAC
62 GGACAC
71344107 CATGTAGACAAGAGAGCTACG
1 CATGTAGACAAGAGAGCTACG
71344128 AGACAAATCG
Statistics
Matches: 87, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
66 27 0.31
71 60 0.69
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (67 bp):
CATGTAGACAAGAGAGCTACGTGAAAGATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGAC
AC
Found at i:71353802 original size:27 final size:27
Alignment explanation
Indices: 71353771--71354153 Score: 403
Period size: 27 Copynumber: 14.2 Consensus size: 27
71353761 AAAGTACTCC
*
71353771 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
71353798 TGATTTACAGAATTATTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
71353825 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71353852 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
71353879 CGATTTTTAAAATTATCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71353906 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
71353933 CAATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71353960 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71353987 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
71354014 TGATTTACATAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
71354041 CGATTTGTAAAATTACTGTCTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
71354068 TGATTTACAAAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
71354095 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
71354122 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
71354149 TGATT
1 CGATT
71354154 GTGAAATTAC
Statistics
Matches: 289, Mismatches: 61, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
26 3 0.01
27 283 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:71353812 original size:54 final size:54
Alignment explanation
Indices: 71353771--71354153 Score: 448
Period size: 54 Copynumber: 7.1 Consensus size: 54
71353761 AAAGTACTCC
* * * * *
71353771 CGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTATTGTTTTACCCT
1 CGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTATTTTACCCT
* * *
71353825 CGATTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
1 CGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTATTTTACCCT
* * *
71353879 CGATTTTTAAAATTATCGTTTTA-CCTTCGATTTACAGAATTACTGTTTTACCCT
1 CGATTTATAAAATTACCGTTTTACCCTT-GATTTACAGAATTACTATTTTACCCT
* * * *
71353933 CAATTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTATTTTACCCT
* * * * *
71353987 C-AGTTTACAGAATTACTGTTTTACCCTTGATTTACATAATTACCATTTTACCCT
1 CGA-TTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTATTTTACCCT
* * * * *
71354041 CGATTTGTAAAATTACTGTCTTACCCTTGATTTACAAAATTACTAGTTTACCCT
1 CGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTATTTTACCCT
* * * *
71354095 C-AGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCT
1 CGA-TTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTATTTTACCCT
*
71354149 TGATT
1 CGATT
71354154 GTGAAATTAC
Statistics
Matches: 287, Mismatches: 36, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
53 5 0.02
54 277 0.97
55 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (54 bp):
CGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTATTTTACCCT
Found at i:71354226 original size:54 final size:54
Alignment explanation
Indices: 71354158--71354353 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
71354148 TTGATTGTGA
* * * *
71354158 AATTACTGAAATACCCCTATAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
71354212 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
71354266 AATTA-TCGAAATACCCTTGTAGGGGAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
71354320 AATTACTGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTATAGGGTAGAATTACC
71354354 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 122 0.98
55 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:71354344 original size:27 final size:27
Alignment explanation
Indices: 71354158--71354352 Score: 230
Period size: 27 Copynumber: 7.2 Consensus size: 27
71354148 TTGATTGTGA
*
71354158 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71354185 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
71354212 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
71354239 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
71354266 AATTA-TCGAAATACCCTTGTAGGGGAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
71354293 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
71354320 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
71354347 AATTAC
1 AATTAC
71354353 CATTTTGCCC
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:71354590 original size:27 final size:26
Alignment explanation
Indices: 71354552--71354631 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
71354542 CGGAGGAAGC
71354552 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
71354579 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
71354605 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
71354632 ATTGACCGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:71354754 original size:22 final size:22
Alignment explanation
Indices: 71354722--71354780 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
71354712 CCCGTTATTA
*
71354722 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
71354744 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
71354766 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
71354781 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:71354966 original size:27 final size:27
Alignment explanation
Indices: 71354944--71355017 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
71354934 TAGGTGGGTT
*
71354944 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
* *
71354971 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
71354998 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
71355018 CAGCCATGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 34 0.85
28 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:71355144 original size:6 final size:6
Alignment explanation
Indices: 71355135--71355400 Score: 192
Period size: 6 Copynumber: 43.8 Consensus size: 6
71355125 TTGCATTCAC
* * * * *
71355135 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG -TTACTA ATACTA
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATT-CTG ATTCTG
71355184 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * * *
71355232 -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
71355281 ATTCTG ATTTTG -TTATTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
71355330 ATTCTA ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
71355378 -TGACTG ATTCTG ATTCTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCT
71355401 CATTTTGGTT
Statistics
Matches: 207, Mismatches: 30, Indels: 46
0.73 0.11 0.16
Matches are distributed among these distances:
5 15 0.07
6 174 0.84
7 14 0.07
8 4 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:71355195 original size:30 final size:30
Alignment explanation
Indices: 71355160--71355400 Score: 280
Period size: 30 Copynumber: 8.2 Consensus size: 30
71355150 CTGTCACGTA
*
71355160 ATTCTGATTCTGTTACTAATACTAATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
**
71355190 ATTCTGATTCTGATT-CTGTTACTGATTCTG
1 ATTCTGATTCTG-TTACTAATACTGATTCTG
* *
71355220 ATTCTGATTCTGTCACGTAATTCTGATTCTG
1 ATTCTGATTCTGTTAC-TAATACTGATTCTG
71355251 ATTCTGATTCTGTTACTAATACTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
*
71355281 ATTCTGATTTTG-T--T-AT--TGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
* * *
71355305 ATTCTGATTCTGTCACCTAATTCTGATTCTA
1 ATTCTGATTCTGTTA-CTAATACTGATTCTG
* *
71355336 ATTCTGATTCTGTTACTAATATTGATTCTA
1 ATTCTGATTCTGTTACTAATACTGATTCTG
* * *
71355366 ATTCTGATTCTGTGACTGATTCTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
71355396 ATTCT
1 ATTCT
71355401 CATTTTGGTT
Statistics
Matches: 180, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
24 19 0.11
26 2 0.01
27 1 0.01
28 1 0.01
29 4 0.02
30 104 0.58
31 49 0.27
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGTTACTAATACTGATTCTG
Done.