Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr07 97507971 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 97507971 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 232 characters in sequence are not A, C, G, or T File 239 of 328 Found at i:71355276 original size:79 final size:79 Alignment explanation
Indices: 71355135--71355395 Score: 305 Period size: 79 Copynumber: 3.2 Consensus size: 79 71355125 TTGCATTCAC * * * * * 71355135 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTG-TTACTAATACTAATT-CTGATTCTGAT 1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATT-CTGATTCT-GTTACTAATACTGAT 71355198 TCTGATTCTGTTACTG 64 TCTGATTCTGTTACTG 71355214 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC 1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC * 71355279 TGATTCTGATTTTGTTATTG 66 TGATTC------TGTTACTG * * * 71355299 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATATTGATTC 1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC * 71355364 TAATTCTGATT-CTG 66 TGATTCTG-TTACTG * 71355378 -TGACTGATTCTGATTCTG 1 AT-TCTGATTCTGATTCTG 71355396 ATTCTCATTT Statistics Matches: 160, Mismatches: 12, Indels: 20 0.83 0.06 0.10 Matches are distributed among these distances: 78 3 0.02 79 79 0.49 80 4 0.03 85 74 0.46 ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48 Consensus pattern (79 bp): ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC TGATTCTGTTACTG Found at i:71355278 original size:85 final size:85 Alignment explanation
Indices: 71355135--71355400 Score: 400 Period size: 85 Copynumber: 3.2 Consensus size: 85 71355125 TTGCATTCAC ** * 71355135 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTG--T-T-A--CTAATACTAATTCTGATTC 1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC 71355194 TGATTCTGATTCTGTTACTG 66 TGATTCTGATTCTGTTACTG 71355214 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC 1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC * * 71355279 TGATTCTGATTTTGTTATTG 66 TGATTCTGATTCTGTTACTG * * * 71355299 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATTCTGATTCTGTTACTAATATTGATTC 1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC * * 71355364 TAATTCTGATTCTGTGACTG 66 TGATTCTGATTCTGTTACTG 71355384 ATTCTGATTCTGATTCT 1 ATTCTGATTCTGATTCT 71355401 CATTTTGGTT Statistics Matches: 169, Mismatches: 12, Indels: 6 0.90 0.06 0.03 Matches are distributed among these distances: 79 37 0.22 81 1 0.01 82 1 0.01 83 1 0.01 85 129 0.76 ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48 Consensus pattern (85 bp): ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC TGATTCTGATTCTGTTACTG Found at i:71360911 original size:68 final size:68 Alignment explanation
Indices: 71360839--71360990 Score: 177 Period size: 67 Copynumber: 2.2 Consensus size: 68 71360829 CATCATGTGT * * * * 71360839 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA 1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA 71360902 TGTAG 64 TGTAG * * * 71360907 ACAAGAGAGCTAC-AG-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT 1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT 71360970 GTAG 65 GTAG * 71360974 ACATGAGAGCTACGAGA 1 ACAAGAGAGCTACGAGA 71360991 TAAACTGGCT Statistics Matches: 71, Mismatches: 8, Indels: 9 0.81 0.09 0.10 Matches are distributed among these distances: 64 24 0.34 65 3 0.04 66 3 0.04 67 26 0.37 68 15 0.21 ACGTcount: A:0.32, C:0.17, G:0.30, T:0.22 Consensus pattern (68 bp): ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG TAG Found at i:71367516 original size:25 final size:25 Alignment explanation
Indices: 71367487--71367534 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 71367477 CCTTATAATG * * * 71367487 AAAATGACCGTTTTGCCCCTAGGTA 1 AAAATGACCATTATACCCCTAGGTA 71367512 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 71367535 GTTTATATAT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25 Consensus pattern (25 bp): AAAATGACCATTATACCCCTAGGTA Found at i:71367585 original size:9 final size:9 Alignment explanation
Indices: 71367573--71367629 Score: 51 Period size: 9 Copynumber: 5.9 Consensus size: 9 71367563 TTTGATAAAC 71367573 ATGATATGT 1 ATGATATGT * 71367582 ATGATATGCAC 1 ATGATATG--T * 71367593 ATGACATGT 1 ATGATATGT * 71367602 ATGATATGCAC 1 ATGATATG--T 71367613 ATGATATGT 1 ATGATATGT 71367622 ATGATATG 1 ATGATATG 71367630 CACATGAGAT Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 9 23 0.61 11 15 0.39 ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35 Consensus pattern (9 bp): ATGATATGT Found at i:71367596 original size:20 final size:20 Alignment explanation
Indices: 71367571--71367641 Score: 124 Period size: 20 Copynumber: 3.5 Consensus size: 20 71367561 ATTTTGATAA 71367571 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 71367591 ACATGACATGTATGATATGC 1 ACATGATATGTATGATATGC 71367611 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 71367631 ACATGAGATGT 1 ACATGATATGT 71367642 CATAAATGCA Statistics Matches: 48, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 48 1.00 ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:71367618 original size:11 final size:11 Alignment explanation
Indices: 71367582--71367636 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 71367572 CATGATATGT 71367582 ATGATATGCAC 1 ATGATATGCAC * * 71367593 ATGACATG--T 1 ATGATATGCAC 71367602 ATGATATGCAC 1 ATGATATGCAC * 71367613 ATGATATG--T 1 ATGATATGCAC 71367622 ATGATATGCAC 1 ATGATATGCAC 71367633 ATGA 1 ATGA 71367637 GATGTCATAA Statistics Matches: 34, Mismatches: 6, Indels: 8 0.71 0.12 0.17 Matches are distributed among these distances: 9 15 0.44 11 19 0.56 ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31 Consensus pattern (11 bp): ATGATATGCAC Found at i:71367651 original size:40 final size:40 Alignment explanation
Indices: 71367571--71367651 Score: 128 Period size: 40 Copynumber: 2.0 Consensus size: 40 71367561 ATTTTGATAA * 71367571 ACATGATATGTATGATATGCACATGACATGTATGATATGC 1 ACATGATATGTATGATATGCACATGACATGTATGAAATGC * 71367611 ACATGATATGTATGATATGCACATGAGATGTCAT-AAATGC 1 ACATGATATGTATGATATGCACATGACATGT-ATGAAATGC 71367651 A 1 A 71367652 TTGGGTTGGG Statistics Matches: 38, Mismatches: 2, Indels: 2 0.90 0.05 0.05 Matches are distributed among these distances: 40 36 0.95 41 2 0.05 ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31 Consensus pattern (40 bp): ACATGATATGTATGATATGCACATGACATGTATGAAATGC Found at i:71367737 original size:22 final size:22 Alignment explanation
Indices: 71367687--71367846 Score: 241 Period size: 22 Copynumber: 7.0 Consensus size: 22 71367677 AGGAAGTGCA 71367687 AAAGGGCTTATGCCCCAGTTATT 1 AAAGGGCTTATGCCCCAGTTA-T 71367710 AAAGGGCTTATGCCCCAGTTAT 1 AAAGGGCTTATGCCCCAGTTAT 71367732 AAAGGGCTTATGCCCCAGTTAT 1 AAAGGGCTTATGCCCCAGTTAT 71367754 AAAGGGCTTATGCCCCAGTTAT 1 AAAGGGCTTATGCCCCAGTTAT 71367776 AAAGGGCTTATGCCCCAGTTAT 1 AAAGGGCTTATGCCCCAGTTAT * 71367798 AAAAGGGCTTTTGCCCCAGTTATT 1 -AAAGGGCTTATGCCCCAGTTA-T * 71367822 AAAAGAGGC-TAGGCCTCCAGTTAT 1 -AAAG-GGCTTATGCC-CCAGTTAT 71367846 A 1 A 71367847 TGATAAAGCA Statistics Matches: 130, Mismatches: 3, Indels: 8 0.92 0.02 0.06 Matches are distributed among these distances: 22 67 0.52 23 42 0.32 24 11 0.08 25 10 0.08 ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28 Consensus pattern (22 bp): AAAGGGCTTATGCCCCAGTTAT Found at i:71368072 original size:31 final size:31 Alignment explanation
Indices: 71368037--71368100 Score: 110 Period size: 31 Copynumber: 2.1 Consensus size: 31 71368027 CGTTTACAGT 71368037 AAAGGCTTCGGCCCAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA ** 71368068 AAAGGCTTCGGCCCAGTGTTATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA 71368099 AA 1 AA 71368101 TATGAAAAGG Statistics Matches: 31, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 31 31 1.00 ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTAATATGAAATATGA Found at i:71374478 original size:18 final size:17 Alignment explanation
Indices: 71374455--71374488 Score: 59 Period size: 18 Copynumber: 1.9 Consensus size: 17 71374445 TAGCTGTGCC 71374455 GTTTTCTCTTCTGTATTA 1 GTTTTCTCTTCT-TATTA 71374473 GTTTTCTCTTCTTATT 1 GTTTTCTCTTCTTATT 71374489 CTCTTCCCTT Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 17 4 0.25 18 12 0.75 ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65 Consensus pattern (17 bp): GTTTTCTCTTCTTATTA Found at i:71375864 original size:28 final size:28 Alignment explanation
Indices: 71375803--71375900 Score: 108 Period size: 28 Copynumber: 3.5 Consensus size: 28 71375793 TCACAAATTG ** * * 71375803 GCACTAAGTGTGCGGGTTCAAATTATACA 1 GCACTAAGTGTGCAAGTTC-GATTATATA * 71375832 GCACTAAGTGTGCAAGTTTGATTATATA 1 GCACTAAGTGTGCAAGTTCGATTATATA * * 71375860 GCACTAAGTGTGCGAGTTCGACTAT-TAA 1 GCACTAAGTGTGCAAGTTCGATTATAT-A 71375888 GCACTAAGTGTGC 1 GCACTAAGTGTGC 71375901 GGGCTTATTG Statistics Matches: 60, Mismatches: 8, Indels: 3 0.85 0.11 0.04 Matches are distributed among these distances: 27 1 0.02 28 43 0.72 29 16 0.27 ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCAAGTTCGATTATATA Found at i:71383748 original size:18 final size:17 Alignment explanation
Indices: 71383725--71383758 Score: 59 Period size: 18 Copynumber: 1.9 Consensus size: 17 71383715 TAGCTGTGCC 71383725 GTTTTCTCTTCTGTATTA 1 GTTTTCTCTTCT-TATTA 71383743 GTTTTCTCTTCTTATT 1 GTTTTCTCTTCTTATT 71383759 CTCTTCCCTT Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 17 4 0.25 18 12 0.75 ACGTcount: A:0.09, C:0.18, G:0.09, T:0.65 Consensus pattern (17 bp): GTTTTCTCTTCTTATTA Found at i:71385135 original size:28 final size:28 Alignment explanation
Indices: 71385074--71385171 Score: 108 Period size: 28 Copynumber: 3.5 Consensus size: 28 71385064 TCACAAATTG ** * * 71385074 GCACTAAGTGTGCGGGTTCAAATTATACA 1 GCACTAAGTGTGCAAGTTC-GATTATATA * 71385103 GCACTAAGTGTGCAAGTTTGATTATATA 1 GCACTAAGTGTGCAAGTTCGATTATATA * * 71385131 GCACTAAGTGTGCGAGTTCGACTAT-TAA 1 GCACTAAGTGTGCAAGTTCGATTATAT-A 71385159 GCACTAAGTGTGC 1 GCACTAAGTGTGC 71385172 GGGCTTATTG Statistics Matches: 60, Mismatches: 8, Indels: 3 0.85 0.11 0.04 Matches are distributed among these distances: 27 1 0.02 28 43 0.72 29 16 0.27 ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCAAGTTCGATTATATA Found at i:71390950 original size:9 final size:9 Alignment explanation
Indices: 71390938--71390994 Score: 51 Period size: 9 Copynumber: 5.9 Consensus size: 9 71390928 TTTGATAAAC 71390938 ATGATATGT 1 ATGATATGT * 71390947 ATGATATGCAC 1 ATGATATG--T * 71390958 ATGACATGT 1 ATGATATGT * 71390967 ATGATATGCAC 1 ATGATATG--T 71390978 ATGATATGT 1 ATGATATGT 71390987 ATGATATG 1 ATGATATG 71390995 CACATGAGAT Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 9 23 0.61 11 15 0.39 ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35 Consensus pattern (9 bp): ATGATATGT Found at i:71390961 original size:20 final size:20 Alignment explanation
Indices: 71390936--71391006 Score: 124 Period size: 20 Copynumber: 3.5 Consensus size: 20 71390926 ATTTTGATAA 71390936 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 71390956 ACATGACATGTATGATATGC 1 ACATGATATGTATGATATGC 71390976 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 71390996 ACATGAGATGT 1 ACATGATATGT 71391007 TCATAAATGC Statistics Matches: 48, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 48 1.00 ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:71390983 original size:11 final size:11 Alignment explanation
Indices: 71390947--71391001 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 71390937 CATGATATGT 71390947 ATGATATGCAC 1 ATGATATGCAC * * 71390958 ATGACATG--T 1 ATGATATGCAC 71390967 ATGATATGCAC 1 ATGATATGCAC * 71390978 ATGATATG--T 1 ATGATATGCAC 71390987 ATGATATGCAC 1 ATGATATGCAC 71390998 ATGA 1 ATGA 71391002 GATGTTCATA Statistics Matches: 34, Mismatches: 6, Indels: 8 0.71 0.12 0.17 Matches are distributed among these distances: 9 15 0.44 11 19 0.56 ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31 Consensus pattern (11 bp): ATGATATGCAC Found at i:71391109 original size:25 final size:25 Alignment explanation
Indices: 71391053--71391195 Score: 229 Period size: 25 Copynumber: 5.8 Consensus size: 25 71391043 AGGAAGTGCA 71391053 AAAGGGCTTATGCCCCAGTTAT--T 1 AAAGGGCTTATGCCCCAGTTATGAT 71391076 AAAGGGCTTATGCCCCAGTTATGAT 1 AAAGGGCTTATGCCCCAGTTATGAT 71391101 AAAGGGCTTATGCCCCAGTTATGAT 1 AAAGGGCTTATGCCCCAGTTATGAT * * 71391126 GAAGGGCTTATGCCCCAGTTACGAT 1 AAAGGGCTTATGCCCCAGTTATGAT * 71391151 AAAGGGCTTATGCCCCAGTTAT-AA 1 AAAGGGCTTATGCCCCAGTTATGAT * 71391175 AAAGGGCTTTTGCCCCAGTTA 1 AAAGGGCTTATGCCCCAGTTA 71391196 CTAAAAGAGG Statistics Matches: 112, Mismatches: 6, Indels: 3 0.93 0.05 0.02 Matches are distributed among these distances: 23 22 0.20 24 21 0.19 25 69 0.62 ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27 Consensus pattern (25 bp): AAAGGGCTTATGCCCCAGTTATGAT Found at i:71391152 original size:50 final size:49 Alignment explanation
Indices: 71391053--71391223 Score: 240 Period size: 50 Copynumber: 3.5 Consensus size: 49 71391043 AGGAAGTGCA * 71391053 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATGAT 1 AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTACGAT * 71391101 AAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTATGCCCCAGTTACGAT 1 AAAGGGCTTATGCCCCAGTTAT-ATAAAGGGCTTATGCCCCAGTTACGAT * * * 71391151 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTACTA- 1 AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTACGAT * 71391199 AAAGAGGC-TAGGCCTCCAGTTATAT 1 AAAG-GGCTTATGCC-CCAGTTATAT 71391224 GATAAAGCAG Statistics Matches: 111, Mismatches: 8, Indels: 7 0.88 0.06 0.06 Matches are distributed among these distances: 48 31 0.28 49 34 0.31 50 46 0.41 ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27 Consensus pattern (49 bp): AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTACGAT Found at i:71391207 original size:25 final size:23 Alignment explanation
Indices: 71391052--71391222 Score: 200 Period size: 25 Copynumber: 7.0 Consensus size: 23 71391042 GAGGAAGTGC 71391052 AAAAGGGCTTATGCCCCAGTTAT 1 AAAAGGGCTTATGCCCCAGTTAT * 71391075 TAAAGGGCTTATGCCCCAGTTAT 1 AAAAGGGCTTATGCCCCAGTTAT 71391098 GATAAAGGGCTTATGCCCCAGTTAT 1 -A-AAAGGGCTTATGCCCCAGTTAT * * 71391123 GATGAAGGGCTTATGCCCCAGTTACG 1 -A-AAAGGGCTTATGCCCCAGTTA-T 71391149 ATAAAGGGCTTATGCCCCAGTTAT 1 A-AAAGGGCTTATGCCCCAGTTAT * 71391173 AAAAAGGGCTTTTGCCCCAGTTACT 1 -AAAAGGGCTTATGCCCCAGTTA-T * 71391198 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 71391222 A 1 A 71391223 TGATAAAGCA Statistics Matches: 132, Mismatches: 9, Indels: 13 0.86 0.06 0.08 Matches are distributed among these distances: 23 22 0.17 24 31 0.23 25 79 0.60 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26 Consensus pattern (23 bp): AAAAGGGCTTATGCCCCAGTTAT Found at i:71391451 original size:31 final size:31 Alignment explanation
Indices: 71391415--71391478 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 71391405 CGTTTACAGT * 71391415 AAAGGCTTCGGCCTAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA ** 71391446 AAAGGCTTCGGCCCAGTGTTATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA 71391477 AA 1 AA 71391479 TATGAAAAGG Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 31 30 1.00 ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTAATATGAAATATGA Found at i:71396024 original size:68 final size:68 Alignment explanation
Indices: 71395952--71396103 Score: 177 Period size: 64 Copynumber: 2.2 Consensus size: 68 71395942 CATCATGTGT * * * * 71395952 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-A-ACACCA 1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCACATGCGTGATACCAGGTGAAGACACCA 71396015 TGTAG 64 TGTAG * * * 71396020 ACAAGAGAGCTAC-AG-GATATATGTAGCTAGGTCACATGCGTGGTTCCAGGTGAAGGACACCAT 1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCACATGCGTGATACCAGGTGAA-GACACCAT 71396083 GTAG 65 GTAG * 71396087 ACAAGAGAGCTATGAGA 1 ACAAGAGAGCTACGAGA 71396104 TAAACTGGCT Statistics Matches: 71, Mismatches: 8, Indels: 9 0.81 0.09 0.10 Matches are distributed among these distances: 64 26 0.37 65 4 0.06 66 1 0.01 67 25 0.35 68 15 0.21 ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21 Consensus pattern (68 bp): ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCACATGCGTGATACCAGGTGAAGACACCATG TAG Found at i:71400213 original size:43 final size:43 Alignment explanation
Indices: 71400165--71400294 Score: 149 Period size: 43 Copynumber: 3.0 Consensus size: 43 71400155 CATAGGATTG * 71400165 TCGATATGTG-TTCTCATGTAAGACCACGTCTGGGACGTTGGCA 1 TCGATATGTGATT-ACATGTAAGACCACGTCTGGGACGTTGGCA * * * * 71400208 TCGATAAGTGATTACGTGTAAGACC-CTGTCTGGGA-TTGTGGCT 1 TCGATATGTGATTACATGTAAGACCAC-GTCTGGGACGT-TGGCA * * 71400251 TCGATATGTGATTAAATGTAAGACTACGTCTGGGACGTTGGCA 1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA 71400294 T 1 T 71400295 TGTACGATAT Statistics Matches: 71, Mismatches: 11, Indels: 10 0.77 0.12 0.11 Matches are distributed among these distances: 42 2 0.03 43 65 0.92 44 4 0.06 ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32 Consensus pattern (43 bp): TCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA Found at i:71403044 original size:46 final size:46 Alignment explanation
Indices: 71402977--71403158 Score: 251 Period size: 46 Copynumber: 4.0 Consensus size: 46 71402967 TATATATACA * * * 71402977 CATCTCATACATATCTCACATTAGCCATTTAGCTTTACCACATATC 1 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATATC * * * 71403023 CATCTCATACACGTTTCACATTAGCCATTCGGCTTTACCTCATATC 1 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATATC * * 71403069 CATCTCATACACGTTT-AGCATTAGCCATTCAGCTTTACCTCATATC 1 CATCTCATACACATTTCA-CATTAGCCATTCAGCTTTACCACATATC * * 71403115 CATCTCATACACATTTCGCATTAGCCATTC-GGTTTACCACATAT 1 CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATAT 71403159 ATACACTTCC Statistics Matches: 123, Mismatches: 11, Indels: 5 0.88 0.08 0.04 Matches are distributed among these distances: 45 13 0.11 46 110 0.89 ACGTcount: A:0.27, C:0.31, G:0.08, T:0.35 Consensus pattern (46 bp): CATCTCATACACATTTCACATTAGCCATTCAGCTTTACCACATATC Found at i:71403188 original size:92 final size:91 Alignment explanation
Indices: 71402992--71403205 Score: 254 Period size: 92 Copynumber: 2.3 Consensus size: 91 71402982 CATACATATC * * 71402992 TCACATTAGCCATTTAGCTTTACCACATATCCATCTCATACACGTTTCACATTAGCCATTCGGCT 1 TCACATTAGCCATTCAGCTTTACCACATATCCATCTCATACACATTTCACATTAGCCATTCGGCT * * 71403057 TTACCTCATATCCATCTCATACACGTT 66 TTACCACATAT-CATCACATACACGTT * * 71403084 T-AGCATTAGCCATTCAGCTTTACCTCATATCCATCTCATACACATTTCGCATTAGCCATTCGG- 1 TCA-CATTAGCCATTCAGCTTTACCACATATCCATCTCATACACATTTCACATTAGCCATTCGGC * * 71403147 TTTACCACATAT-ATACACTTCCACGTT 65 TTTACCACATATCAT-CACATACACGTT * * * * 71403174 CATCACATTGGCCATTCTGCCTTATCACATAT 1 --TCACATTAGCCATTCAGCTTTACCACATAT 71403206 ATGCATGTTC Statistics Matches: 104, Mismatches: 13, Indels: 10 0.82 0.10 0.08 Matches are distributed among these distances: 89 2 0.02 90 9 0.09 91 12 0.12 92 80 0.77 93 1 0.01 ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35 Consensus pattern (91 bp): TCACATTAGCCATTCAGCTTTACCACATATCCATCTCATACACATTTCACATTAGCCATTCGGCT TTACCACATATCATCACATACACGTT Found at i:71403206 original size:47 final size:47 Alignment explanation
Indices: 71403133--71403510 Score: 598 Period size: 47 Copynumber: 8.1 Consensus size: 47 71403123 ACACATTTCG * * * * * * 71403133 CATTAGCCATTCGG-TTTACCACATATATACACT-TCCACGTTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA * 71403179 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA * 71403226 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA * 71403273 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA * 71403320 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA 71403367 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA 71403414 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA * * * ** 71403461 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA 1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA 71403508 CAT 1 CAT 71403511 AAAATCCTAA Statistics Matches: 313, Mismatches: 17, Indels: 3 0.94 0.05 0.01 Matches are distributed among these distances: 46 13 0.04 47 300 0.96 ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34 Consensus pattern (47 bp): CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA Found at i:71406845 original size:26 final size:26 Alignment explanation
Indices: 71406815--71406875 Score: 77 Period size: 26 Copynumber: 2.3 Consensus size: 26 71406805 TATCCAGAGC * * 71406815 TCCTGATTAAAGGCTCTTCATAAGCT 1 TCCTGATTAAAAGCTCTTCATAAACT * ** 71406841 TCCTGATTAAAAGTTCTTTGTAAACT 1 TCCTGATTAAAAGCTCTTCATAAACT 71406867 TCCTGATTA 1 TCCTGATTA 71406876 TGGCTTTGTG Statistics Matches: 30, Mismatches: 5, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 26 30 1.00 ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39 Consensus pattern (26 bp): TCCTGATTAAAAGCTCTTCATAAACT Found at i:71413429 original size:29 final size:29 Alignment explanation
Indices: 71413387--71413468 Score: 155 Period size: 29 Copynumber: 2.8 Consensus size: 29 71413377 ATTATTTTTT 71413387 TTTCCAGCATGCACACTTAGTGCCATATA 1 TTTCCAGCATGCACACTTAGTGCCATATA 71413416 TTTCCAGCATGCACACTTAGTGCCATATA 1 TTTCCAGCATGCACACTTAGTGCCATATA * 71413445 TTTCCAGCACGCACACTTAGTGCC 1 TTTCCAGCATGCACACTTAGTGCC 71413469 TATCTCGTCA Statistics Matches: 52, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 29 52 1.00 ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29 Consensus pattern (29 bp): TTTCCAGCATGCACACTTAGTGCCATATA Found at i:71421330 original size:29 final size:29 Alignment explanation
Indices: 71421288--71421369 Score: 155 Period size: 29 Copynumber: 2.8 Consensus size: 29 71421278 GTATTTTTTT 71421288 TTTCCAGCATGCACACTTAGTGCCATATA 1 TTTCCAGCATGCACACTTAGTGCCATATA 71421317 TTTCCAGCATGCACACTTAGTGCCATATA 1 TTTCCAGCATGCACACTTAGTGCCATATA * 71421346 TTTCCAGCACGCACACTTAGTGCC 1 TTTCCAGCATGCACACTTAGTGCC 71421370 TATCTCGTCA Statistics Matches: 52, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 29 52 1.00 ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29 Consensus pattern (29 bp): TTTCCAGCATGCACACTTAGTGCCATATA Found at i:71430303 original size:40 final size:40 Alignment explanation
Indices: 71430244--71430451 Score: 285 Period size: 40 Copynumber: 5.2 Consensus size: 40 71430234 TGAATGATAC * * * 71430244 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT * 71430284 CCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 71430324 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT * * * 71430364 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT * * ** * 71430404 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 71430444 CC-GGCTAA 1 CCGGGCTAA 71430452 ATTCCGAAGA Statistics Matches: 150, Mismatches: 17, Indels: 3 0.88 0.10 0.02 Matches are distributed among these distances: 39 5 0.03 40 143 0.95 41 2 0.01 ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27 Consensus pattern (40 bp): CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT Found at i:71432958 original size:24 final size:24 Alignment explanation
Indices: 71432894--71433010 Score: 161 Period size: 23 Copynumber: 5.0 Consensus size: 24 71432884 GCTTTATCAT * 71432894 ATAACTGGAGGCCT-AGCCTCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTA * 71432919 ACAACTGGGGCA-AAGCCCTTTTA 1 ATAACTGGGGCATAAGCCCTTTTA 71432942 ATAACTGGGGCATAAGCCCTTTTA 1 ATAACTGGGGCATAAGCCCTTTTA 71432966 ATAAC-GGGGCATAAGCCC-TTTA 1 ATAACTGGGGCATAAGCCCTTTTA * 71432988 ATAATTGGGGCATAAGCCCTTTT 1 ATAACTGGGGCATAAGCCCTTTT 71433011 TCACTTCCTC Statistics Matches: 84, Mismatches: 4, Indels: 9 0.87 0.04 0.09 Matches are distributed among these distances: 22 8 0.10 23 43 0.51 24 26 0.31 25 7 0.08 ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28 Consensus pattern (24 bp): ATAACTGGGGCATAAGCCCTTTTA Found at i:71433082 original size:9 final size:9 Alignment explanation
Indices: 71433068--71433144 Score: 64 Period size: 9 Copynumber: 7.9 Consensus size: 9 71433058 ATCTCGTGTG 71433068 CATATCATA 1 CATATCATA * 71433077 CATATCATGTG 1 CATATCA--TA 71433088 CATATCATA 1 CATATCATA * * 71433097 CATGTCATGTG 1 CATATCA--TA 71433108 CATATCATA 1 CATATCATA * 71433117 CATATCATGTG 1 CATATCA--TA 71433128 CATATCATA 1 CATATCATA 71433137 CATATCAT 1 CATATCAT 71433145 GTTTATCAAA Statistics Matches: 54, Mismatches: 8, Indels: 12 0.73 0.11 0.16 Matches are distributed among these distances: 9 31 0.57 11 23 0.43 ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35 Consensus pattern (9 bp): CATATCATA Found at i:71433087 original size:20 final size:20 Alignment explanation
Indices: 71433064--71433146 Score: 157 Period size: 20 Copynumber: 4.2 Consensus size: 20 71433054 GAACATCTCG 71433064 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA * 71433084 TGTGCATATCATACATGTCA 1 TGTGCATATCATACATATCA 71433104 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA 71433124 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA 71433144 TGT 1 TGT 71433147 TTATCAAAAT Statistics Matches: 61, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 20 61 1.00 ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36 Consensus pattern (20 bp): TGTGCATATCATACATATCA Found at i:71433093 original size:11 final size:11 Alignment explanation
Indices: 71433064--71433135 Score: 66 Period size: 11 Copynumber: 7.1 Consensus size: 11 71433054 GAACATCTCG 71433064 TGTGCATATCA 1 TGTGCATATCA * 71433075 --TACATATCA 1 TGTGCATATCA 71433084 TGTGCATATCA 1 TGTGCATATCA * * 71433095 --TACATGTCA 1 TGTGCATATCA 71433104 TGTGCATATCA 1 TGTGCATATCA * 71433115 --TACATATCA 1 TGTGCATATCA 71433124 TGTGCATATCA 1 TGTGCATATCA 71433135 T 1 T 71433136 ACATATCATG Statistics Matches: 47, Mismatches: 8, Indels: 12 0.70 0.12 0.18 Matches are distributed among these distances: 9 23 0.49 11 24 0.51 ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36 Consensus pattern (11 bp): TGTGCATATCA Found at i:71434481 original size:27 final size:27 Alignment explanation
Indices: 71434390--71434473 Score: 125 Period size: 27 Copynumber: 3.1 Consensus size: 27 71434380 GGGCATATTT * 71434390 GTCATTTTACCATACAGGGG-TATTACG 1 GTCACTTTACCATACAGGGGCT-TTACG * 71434417 GTCACTTTACCTTACAGGGGCTTTACG 1 GTCACTTTACCATACAGGGGCTTTACG * 71434444 GTCACTTTACCCTACAGGGGCTTTACG 1 GTCACTTTACCATACAGGGGCTTTACG 71434471 GTC 1 GTC 71434474 TTTTTACCTA Statistics Matches: 53, Mismatches: 3, Indels: 2 0.91 0.05 0.03 Matches are distributed among these distances: 27 52 0.98 28 1 0.02 ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32 Consensus pattern (27 bp): GTCACTTTACCATACAGGGGCTTTACG Found at i:71434490 original size:27 final size:26 Alignment explanation
Indices: 71434390--71434483 Score: 118 Period size: 27 Copynumber: 3.5 Consensus size: 26 71434380 GGGCATATTT * 71434390 GTCATTTTACCATACAGGGG-TATTACG 1 GTCACTTTACC-TACAGGGGCT-TTACG 71434417 GTCACTTTACCTTACAGGGGCTTTACG 1 GTCACTTTACC-TACAGGGGCTTTACG 71434444 GTCACTTTACCCTACAGGGGCTTTACG 1 GTCACTTTA-CCTACAGGGGCTTTACG ** 71434471 GTCTTTTTACCTA 1 GTCACTTTACCTA 71434484 ATAGGGGTAT Statistics Matches: 61, Mismatches: 4, Indels: 5 0.87 0.06 0.07 Matches are distributed among these distances: 26 4 0.07 27 54 0.89 28 3 0.05 ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35 Consensus pattern (26 bp): GTCACTTTACCTACAGGGGCTTTACG Found at i:71434565 original size:27 final size:27 Alignment explanation
Indices: 71434512--71434791 Score: 161 Period size: 27 Copynumber: 10.3 Consensus size: 27 71434502 TTTCATCCTA * * * * * * 71434512 CAAGGGTGTTTTGGTAAATCTACAAAC 1 CAAGGGTATTTCGGTAATTTTATAAAT * * * 71434539 CAAGGGTATTTCAGTAATTTTGTAAAC 1 CAAGGGTATTTCGGTAATTTTATAAAT * ** * 71434566 CAATGGTATTTCTATAATTTTTAGAAAGT 1 CAAGGGTATTTCGGTAA-TTTTATAAA-T * * * 71434595 CAAGGGTATTTCTGTAACTTTGTAAAT 1 CAAGGGTATTTCGGTAATTTTATAAAT * * * 71434622 CAGGGGTATTTTGGTAATTTTAAAAAT 1 CAAGGGTATTTCGGTAATTTTATAAAT * * * 71434649 TAAGGGTATTTCGGTAATTTCACAAA- 1 CAAGGGTATTTCGGTAATTTTATAAAT * * * 71434675 CCAGTGGTATTTTGGTAATTTTACAAA- 1 CAAG-GGTATTTCGGTAATTTTATAAAT * * * 71434702 CTAGGGGTATTTTGGTAATTTTACAAAT 1 C-AAGGGTATTTCGGTAATTTTATAAAT ** * * 71434730 TGAGGGTATTTCTGTAATTTTGTAAAT 1 CAAGGGTATTTCGGTAATTTTATAAAT * ** * * 71434757 CGAGGGTAAAAT-AGTAATTCTATAAAT 1 CAAGGGT-ATTTCGGTAATTTTATAAAT 71434784 CAAGGGTA 1 CAAGGGTA 71434792 AAATAGTAAT Statistics Matches: 198, Mismatches: 49, Indels: 13 0.76 0.19 0.05 Matches are distributed among these distances: 26 3 0.02 27 164 0.83 28 16 0.08 29 15 0.08 ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38 Consensus pattern (27 bp): CAAGGGTATTTCGGTAATTTTATAAAT Found at i:71434684 original size:54 final size:54 Alignment explanation
Indices: 71434540--71434728 Score: 182 Period size: 54 Copynumber: 3.5 Consensus size: 54 71434530 TCTACAAACC * ** * * * * 71434540 AAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTC 1 AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT-TGGTAA-TTTTA-AAAATT * * ** * * 71434596 AAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTAAAAATT 1 AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTAAAAATT * * * 71434650 AAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT 1 AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTAAAAATT * * 71434704 AGGGGTATTTTGGTAATTTTACAAA 1 AAGGGTATTTCGGTAATTTTACAAA 71434729 TTGAGGGTAT Statistics Matches: 112, Mismatches: 20, Indels: 4 0.82 0.15 0.03 Matches are distributed among these distances: 54 71 0.63 55 6 0.05 56 35 0.31 ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40 Consensus pattern (54 bp): AAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTAAAAATT Found at i:71434791 original size:81 final size:81 Alignment explanation
Indices: 71434617--71434791 Score: 192 Period size: 81 Copynumber: 2.2 Consensus size: 81 71434607 TGTAACTTTG 71434617 TAAATCAGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGG 1 TAAATCAGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGG *** * * 71434682 TATTTTGGTAATTTTA 66 TAAAATAGTAATTCTA * * * * *** * 71434698 CAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAG- 1 TAAATC-AGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCGGTAATTTCACAAA-CCAGT 71434761 GGTAAAATAGTAATTCTA 64 GGTAAAATAGTAATTCTA * 71434779 TAAATCAAGGGTA 1 TAAATCAGGGGTA 71434792 AAATAGTAAT Statistics Matches: 76, Mismatches: 15, Indels: 6 0.78 0.15 0.06 Matches are distributed among these distances: 80 1 0.01 81 71 0.93 82 4 0.05 ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38 Consensus pattern (81 bp): TAAATCAGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGG TAAAATAGTAATTCTA Found at i:71434792 original size:27 final size:27 Alignment explanation
Indices: 71434743--71434966 Score: 162 Period size: 27 Copynumber: 7.9 Consensus size: 27 71434733 GGGTATTTCT * * * 71434743 GTAATTTTGTAAATCGAGGGTAAAATA 1 GTAATTCTATAAATCAAGGGTAAAATA 71434770 GTAATTCTATAAATCAAGGGTAAAATA 1 GTAATTCTATAAATCAAGGGTAAAATA * * 71434797 GTAATTCTATAAATCAACGGTAAAACA 1 GTAATTCTATAAATCAAGGGTAAAATA * * * * 71434824 ATAATTTTGTAAATCTAGGGTAAAACGGGGGTAAAA 1 GTAATTCTATAAATCAAGGGTAAAA------T---A * * ** * 71434860 TGGTAATTATGTAAATCGGGGGTAAAATG 1 --GTAATTCTATAAATCAAGGGTAAAATA * * 71434889 GTAATTCTGTAAATCAAGGGTAAAACA 1 GTAATTCTATAAATCAAGGGTAAAATA ** 71434916 GTAATTCTATAAATCAAGGGTAAAACG 1 GTAATTCTATAAATCAAGGGTAAAATA * * 71434943 GTACTTC-ATAAATCGAGGGTAAAA 1 GTAATTCTATAAATCAAGGGTAAAA 71434967 CGGTAATTAT Statistics Matches: 161, Mismatches: 25, Indels: 23 0.77 0.12 0.11 Matches are distributed among these distances: 26 16 0.10 27 122 0.76 32 1 0.01 36 1 0.01 38 21 0.13 ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28 Consensus pattern (27 bp): GTAATTCTATAAATCAAGGGTAAAATA Found at i:71434866 original size:65 final size:65 Alignment explanation
Indices: 71434787--71434914 Score: 157 Period size: 65 Copynumber: 2.0 Consensus size: 65 71434777 TATAAATCAA * * * 71434787 GGGTAAAATAGTAATTCTATAAATCAACGGTAAAACAATAATTTTGTAAATCTAGGGTAAAACGG 1 GGGTAAAATAGTAATTATATAAATCAACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACGG * * *** *** 71434852 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAAC 1 GGGTAAAATAGTAATTATATAAATCAACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAAC 71434915 AGTAATTCTA Statistics Matches: 52, Mismatches: 11, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 65 52 1.00 ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27 Consensus pattern (65 bp): GGGTAAAATAGTAATTATATAAATCAACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACGG Found at i:71434911 original size:92 final size:92 Alignment explanation
Indices: 71434751--71434943 Score: 260 Period size: 92 Copynumber: 2.1 Consensus size: 92 71434741 CTGTAATTTT * * * 71434751 GTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG 1 GTAAAACGGGGGTAAAATAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG * * * 71434816 GTAAAACAATAATTTTGTAAATCTAGG 66 GTAAAACAATAATTCTATAAATCAAGG * * ** * * * 71434843 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGG 1 GTAAAACGGGGGTAAAATAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG * 71434908 GTAAAACAGTAATTCTATAAATCAAGG 66 GTAAAACAATAATTCTATAAATCAAGG 71434935 GTAAAACGG 1 GTAAAACGG 71434944 TACTTCATAA Statistics Matches: 87, Mismatches: 14, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 92 87 1.00 ACGTcount: A:0.44, C:0.08, G:0.21, T:0.27 Consensus pattern (92 bp): GTAAAACGGGGGTAAAATAGTAATTATATAAATCAAGGGTAAAATAGTAATTCTATAAATCAACG GTAAAACAATAATTCTATAAATCAAGG Found at i:71434989 original size:26 final size:27 Alignment explanation
Indices: 71434851--71434982 Score: 135 Period size: 27 Copynumber: 4.9 Consensus size: 27 71434841 GGGTAAAACG * * 71434851 GGGGTAAAATGGTAATTATGTAAATCG 1 GGGGTAAAACGGTAATTATGTAAATCA * * 71434878 GGGGTAAAATGGTAATTCTGTAAATCA 1 GGGGTAAAACGGTAATTATGTAAATCA * * * * 71434905 AGGGTAAAACAGTAATTCTATAAATCA 1 GGGGTAAAACGGTAATTATGTAAATCA * * 71434932 AGGGTAAAACGGTACTTCA--TAAATC- 1 GGGGTAAAACGGTAATT-ATGTAAATCA 71434957 GAGGGTAAAACGGTAATTATGTAAAT 1 G-GGGTAAAACGGTAATTATGTAAAT 71434983 TGGGGTACTT Statistics Matches: 90, Mismatches: 11, Indels: 8 0.83 0.10 0.07 Matches are distributed among these distances: 25 1 0.01 26 21 0.23 27 68 0.76 ACGTcount: A:0.41, C:0.08, G:0.23, T:0.27 Consensus pattern (27 bp): GGGGTAAAACGGTAATTATGTAAATCA Found at i:71437782 original size:31 final size:31 Alignment explanation
Indices: 71437741--71437804 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 71437731 CCTTTTCATA * 71437741 TTTCATATTTCATAACACTGGGCCGAAGCCT 1 TTTCAAATTTCATAACACTGGGCCGAAGCCT ** 71437772 TTTCAAATTTCATATTACTGGGCCGAAGCCT 1 TTTCAAATTTCATAACACTGGGCCGAAGCCT 71437803 TT 1 TT 71437805 ACGTAAACGG Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 31 30 1.00 ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36 Consensus pattern (31 bp): TTTCAAATTTCATAACACTGGGCCGAAGCCT Found at i:71438060 original size:24 final size:24 Alignment explanation
Indices: 71437996--71438112 Score: 186 Period size: 23 Copynumber: 4.9 Consensus size: 24 71437986 GCTTTATCAT * 71437996 ATAACTGGAGGCCT-AGCCTCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTA 71438021 ATAACTGGGGCA-AAGCCCTTTTA 1 ATAACTGGGGCATAAGCCCTTTTA 71438044 ATAACTGGGGCATAAGCCCTTTTA 1 ATAACTGGGGCATAAGCCCTTTTA 71438068 ATAACTGGGGCATAAGCCC-TTTA 1 ATAACTGGGGCATAAGCCCTTTTA 71438091 ATAACTGGGGCATAAGCCCTTT 1 ATAACTGGGGCATAAGCCCTTT 71438113 CTCACTTCCT Statistics Matches: 88, Mismatches: 1, Indels: 7 0.92 0.01 0.07 Matches are distributed among these distances: 23 41 0.47 24 39 0.44 25 8 0.09 ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28 Consensus pattern (24 bp): ATAACTGGGGCATAAGCCCTTTTA Found at i:71438069 original size:47 final size:47 Alignment explanation
Indices: 71437996--71438112 Score: 184 Period size: 47 Copynumber: 2.5 Consensus size: 47 71437986 GCTTTATCAT * 71437996 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA 71438044 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA 1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA 71438091 ATAACTGGGGCATAAGCCCTTT 1 ATAACTGGGGCATAAGCCCTTT 71438113 CTCACTTCCT Statistics Matches: 66, Mismatches: 1, Indels: 5 0.92 0.01 0.07 Matches are distributed among these distances: 47 48 0.73 48 18 0.27 ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28 Consensus pattern (47 bp): ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA Found at i:71438184 original size:9 final size:9 Alignment explanation
Indices: 71438170--71438246 Score: 64 Period size: 9 Copynumber: 7.9 Consensus size: 9 71438160 ATCTCGTGTG 71438170 CATATCATA 1 CATATCATA * 71438179 CATATCATGTG 1 CATATCA--TA 71438190 CATATCATA 1 CATATCATA * * 71438199 CATGTCATGTG 1 CATATCA--TA 71438210 CATATCATA 1 CATATCATA * 71438219 CATATCATGTG 1 CATATCA--TA 71438230 CATATCATA 1 CATATCATA 71438239 CATATCAT 1 CATATCAT 71438247 GTTTATCAAA Statistics Matches: 54, Mismatches: 8, Indels: 12 0.73 0.11 0.16 Matches are distributed among these distances: 9 31 0.57 11 23 0.43 ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35 Consensus pattern (9 bp): CATATCATA Found at i:71438189 original size:20 final size:20 Alignment explanation
Indices: 71438166--71438248 Score: 157 Period size: 20 Copynumber: 4.2 Consensus size: 20 71438156 GAACATCTCG 71438166 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA * 71438186 TGTGCATATCATACATGTCA 1 TGTGCATATCATACATATCA 71438206 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA 71438226 TGTGCATATCATACATATCA 1 TGTGCATATCATACATATCA 71438246 TGT 1 TGT 71438249 TTATCAAAAT Statistics Matches: 61, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 20 61 1.00 ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36 Consensus pattern (20 bp): TGTGCATATCATACATATCA Found at i:71438195 original size:11 final size:11 Alignment explanation
Indices: 71438166--71438237 Score: 66 Period size: 11 Copynumber: 7.1 Consensus size: 11 71438156 GAACATCTCG 71438166 TGTGCATATCA 1 TGTGCATATCA * 71438177 --TACATATCA 1 TGTGCATATCA 71438186 TGTGCATATCA 1 TGTGCATATCA * * 71438197 --TACATGTCA 1 TGTGCATATCA 71438206 TGTGCATATCA 1 TGTGCATATCA * 71438217 --TACATATCA 1 TGTGCATATCA 71438226 TGTGCATATCA 1 TGTGCATATCA 71438237 T 1 T 71438238 ACATATCATG Statistics Matches: 47, Mismatches: 8, Indels: 12 0.70 0.12 0.18 Matches are distributed among these distances: 9 23 0.49 11 24 0.51 ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36 Consensus pattern (11 bp): TGTGCATATCA Found at i:71438331 original size:25 final size:25 Alignment explanation
Indices: 71438285--71438332 Score: 60 Period size: 25 Copynumber: 1.9 Consensus size: 25 71438275 ATATATAAAC * * * * 71438285 CCTAGGGGTATAATGGTTATTTTTA 1 CCTAGGGGCAAAACGGTCATTTTTA 71438310 CCTAGGGGCAAAACGGTCATTTT 1 CCTAGGGGCAAAACGGTCATTTT 71438333 CATATTATAA Statistics Matches: 19, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 25 19 1.00 ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35 Consensus pattern (25 bp): CCTAGGGGCAAAACGGTCATTTTTA Found at i:71439575 original size:27 final size:27 Alignment explanation
Indices: 71439484--71439567 Score: 125 Period size: 27 Copynumber: 3.1 Consensus size: 27 71439474 GGGCATATTC * 71439484 GTCATTTTACCATACAGGGG-TATTACG 1 GTCACTTTACCATACAGGGGCT-TTACG * 71439511 GTCACTTTACCTTACAGGGGCTTTACG 1 GTCACTTTACCATACAGGGGCTTTACG * 71439538 GTCACTTTACCCTACAGGGGCTTTACG 1 GTCACTTTACCATACAGGGGCTTTACG 71439565 GTC 1 GTC 71439568 TTTTTACCTA Statistics Matches: 53, Mismatches: 3, Indels: 2 0.91 0.05 0.03 Matches are distributed among these distances: 27 52 0.98 28 1 0.02 ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32 Consensus pattern (27 bp): GTCACTTTACCATACAGGGGCTTTACG Found at i:71439584 original size:27 final size:26 Alignment explanation
Indices: 71439484--71439577 Score: 118 Period size: 27 Copynumber: 3.5 Consensus size: 26 71439474 GGGCATATTC * 71439484 GTCATTTTACCATACAGGGG-TATTACG 1 GTCACTTTACC-TACAGGGGCT-TTACG 71439511 GTCACTTTACCTTACAGGGGCTTTACG 1 GTCACTTTACC-TACAGGGGCTTTACG 71439538 GTCACTTTACCCTACAGGGGCTTTACG 1 GTCACTTTA-CCTACAGGGGCTTTACG ** 71439565 GTCTTTTTACCTA 1 GTCACTTTACCTA 71439578 ATAGGGGTAT Statistics Matches: 61, Mismatches: 4, Indels: 5 0.87 0.06 0.07 Matches are distributed among these distances: 26 4 0.07 27 54 0.89 28 3 0.05 ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35 Consensus pattern (26 bp): GTCACTTTACCTACAGGGGCTTTACG Found at i:71439659 original size:27 final size:27 Alignment explanation
Indices: 71439606--71439857 Score: 150 Period size: 27 Copynumber: 9.3 Consensus size: 27 71439596 TTTCATCCTA * * * * * * 71439606 CAAGGGTGTTTTGGTAAATCTACAAAC 1 CAAGGGTATTTCGGTAATTTTATAAAT * * * 71439633 CAAGGGTATTTCAGTAATTTTGTAAAC 1 CAAGGGTATTTCGGTAATTTTATAAAT * ** * 71439660 CAATGGTATTTCTATAATTTTTAGAAAGT 1 CAAGGGTATTTCGGTAA-TTTTATAAA-T * * * 71439689 CAAGGGTATTTCTGTAACTTTGTAAAT 1 CAAGGGTATTTCGGTAATTTTATAAAT * * 71439716 CAGGGGTATTTTGGTAATTTTA-AAAT 1 CAAGGGTATTTCGGTAATTTTATAAAT ** * * 71439742 TGAGGGTATTTCGGTAATTTCACAAA- 1 CAAGGGTATTTCGGTAATTTTATAAAT * * * 71439768 CCAGTGGTATTTTGGTAATTTTACAAA- 1 CAAG-GGTATTTCGGTAATTTTATAAAT * * * 71439795 CTAGGGGTATTTTGGTAATTTTACAAAT 1 C-AAGGGTATTTCGGTAATTTTATAAAT ** * * 71439823 TGAGGGTATTTCTGTAATTTTGTAAAT 1 CAAGGGTATTTCGGTAATTTTATAAAT * 71439850 CGAGGGTA 1 CAAGGGTA 71439858 AAATAGTATT Statistics Matches: 177, Mismatches: 42, Indels: 12 0.77 0.18 0.05 Matches are distributed among these distances: 26 23 0.13 27 125 0.71 28 14 0.08 29 15 0.08 ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39 Consensus pattern (27 bp): CAAGGGTATTTCGGTAATTTTATAAAT Found at i:71439777 original size:53 final size:54 Alignment explanation
Indices: 71439614--71439821 Score: 154 Period size: 53 Copynumber: 3.8 Consensus size: 54 71439604 TACAAGGGTG * * * * * *** * 71439614 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA 1 TTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAGTGGTA * * * * * ** * * 71439668 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTT-GTAAATCAGGGGTA 1 TTT-TGGTAA-TTTTACAAACT-AGGGGTATTTCGGTAA-TTTCACAAACCAGTGGTA * 71439724 TTTTGGTAATTTTA-AAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTA 1 TTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACCAGTGGTA * * 71439777 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA 1 TTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAA 71439822 TTGAGGGTAT Statistics Matches: 124, Mismatches: 21, Indels: 18 0.76 0.13 0.11 Matches are distributed among these distances: 52 3 0.02 53 38 0.31 54 33 0.27 55 15 0.12 56 32 0.26 57 3 0.02 ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40 Consensus pattern (54 bp): TTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAGTGGTA Found at i:71439937 original size:27 final size:27 Alignment explanation
Indices: 71439836--71440107 Score: 228 Period size: 27 Copynumber: 9.8 Consensus size: 27 71439826 GGGTATTTCT * * 71439836 GTAATTTTGTAAATCGAGGGTAAAATA 1 GTAATTCTGTAAATCGAGGGTAAAACA * * 71439863 GT-ATTCTGTAAATCAAGGGTAAAATA 1 GTAATTCTGTAAATCGAGGGTAAAACA * * 71439889 GTAATTCTAT-AATCGACGGTAAAACA 1 GTAATTCTGTAAATCGAGGGTAAAACA * * * 71439915 ATAATTTTGTAAATCGAGGGTAAAACG 1 GTAATTCTGTAAATCGAGGGTAAAACA * 71439942 GTAATTCTGTAAGTCGAGGGTAAAACGGGGGTAAAA 1 GTAATTCTGTAAATCGAGGGTAAAAC---------A * ** 71439978 TGGTAATTATGTAAATCG-GGGTAAAATG 1 --GTAATTCTGTAAATCGAGGGTAAAACA * 71440006 GTAATTCTGTAAATCAAGGGTAAAACA 1 GTAATTCTGTAAATCGAGGGTAAAACA * * * 71440033 GTAATTCTATAAATCAAGGGTAAAACG 1 GTAATTCTGTAAATCGAGGGTAAAACA * * * 71440060 GTACTTCTATAAATCGAGGGTAAAACG 1 GTAATTCTGTAAATCGAGGGTAAAACA * 71440087 GTAATTATGTAAATCG-GGGTA 1 GTAATTCTGTAAATCGAGGGTA 71440108 CTTTGGTAAT Statistics Matches: 201, Mismatches: 30, Indels: 29 0.77 0.12 0.11 Matches are distributed among these distances: 26 63 0.31 27 116 0.58 37 8 0.04 38 14 0.07 ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28 Consensus pattern (27 bp): GTAATTCTGTAAATCGAGGGTAAAACA Found at i:71439974 original size:38 final size:37 Alignment explanation
Indices: 71439923--71440003 Score: 108 Period size: 38 Copynumber: 2.2 Consensus size: 37 71439913 CAATAATTTT * * * 71439923 GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGG 1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCG-GG * * 71439961 GTAAAACGGGGGTAAAATGGTAATTATGTAAATCGGG 1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGGG 71439998 GTAAAA 1 GTAAAA 71440004 TGGTAATTCT Statistics Matches: 38, Mismatches: 5, Indels: 1 0.86 0.11 0.02 Matches are distributed among these distances: 37 8 0.21 38 30 0.79 ACGTcount: A:0.38, C:0.07, G:0.31, T:0.23 Consensus pattern (37 bp): GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGGG Found at i:71440001 original size:91 final size:91 Alignment explanation
Indices: 71439879--71440060 Score: 231 Period size: 91 Copynumber: 2.0 Consensus size: 91 71439869 TGTAAATCAA * * * * 71439879 GGGTAAAATAGTAATTCTATAATCGACGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACGGT 1 GGGTAAAATAGTAATTATATAATCGACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGT * * * 71439944 AATTCTGTAAGTCGAGGGTAAAACGG 66 AATTCTATAAATCAAGGGTAAAACGG * * * *** 71439970 GGGTAAAATGGTAATTATGTAAATCG-GGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAG 1 GGGTAAAATAGTAATTATAT-AATCGACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAG 71440034 TAATTCTATAAATCAAGGGTAAAACGG 65 TAATTCTATAAATCAAGGGTAAAACGG 71440061 TACTTCTATA Statistics Matches: 77, Mismatches: 13, Indels: 2 0.84 0.14 0.02 Matches are distributed among these distances: 91 72 0.94 92 5 0.06 ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26 Consensus pattern (91 bp): GGGTAAAATAGTAATTATATAATCGACGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAGT AATTCTATAAATCAAGGGTAAAACGG Found at i:71441377 original size:30 final size:30 Alignment explanation
Indices: 71441343--71441402 Score: 93 Period size: 30 Copynumber: 2.0 Consensus size: 30 71441333 ATTTAATACG 71441343 AACTTTGGAAAAATTACACTTTTGCCCCTA 1 AACTTTGGAAAAATTACACTTTTGCCCCTA * * * 71441373 AACTTTTGCATAATTACACTTTTGCCCCTA 1 AACTTTGGAAAAATTACACTTTTGCCCCTA 71441403 GGCTCGGGAA Statistics Matches: 27, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 30 27 1.00 ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37 Consensus pattern (30 bp): AACTTTGGAAAAATTACACTTTTGCCCCTA Found at i:71446094 original size:27 final size:27 Alignment explanation
Indices: 71446064--71446155 Score: 130 Period size: 27 Copynumber: 3.4 Consensus size: 27 71446054 ATTACCAAAG * 71446064 TACCCTCGATTTATAGAATTACTGTTT 1 TACCCTCGATTTACAGAATTACTGTTT * * 71446091 TACCCTTGATTTACAGAATTACTATTT 1 TACCCTCGATTTACAGAATTACTGTTT * * * 71446118 TACCCTTGATTTACAAAATTACCGTTT 1 TACCCTCGATTTACAGAATTACTGTTT 71446145 TACCCTCGATT 1 TACCCTCGATT 71446156 GTGAAATTAC Statistics Matches: 58, Mismatches: 7, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 27 58 1.00 ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42 Consensus pattern (27 bp): TACCCTCGATTTACAGAATTACTGTTT Found at i:71446112 original size:54 final size:54 Alignment explanation
Indices: 71446053--71446155 Score: 125 Period size: 54 Copynumber: 1.9 Consensus size: 54 71446043 CGACTTGTAA * * * * 71446053 AATTACCAAAGTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAG 1 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG * *** * 71446107 AATTACTATTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATT 1 AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT 71446156 GTGAAATTAC Statistics Matches: 40, Mismatches: 9, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 54 40 1.00 ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40 Consensus pattern (54 bp): AATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAG Found at i:71446177 original size:27 final size:27 Alignment explanation
Indices: 71446147--71446286 Score: 140 Period size: 27 Copynumber: 5.2 Consensus size: 27 71446137 TACCGTTTTA * ** 71446147 CCCTCGATTGTGAAATTACTGAAATAC 1 CCCTAGATTGTGAAATTACCAAAATAC * ** 71446174 CCCTATAGGGT-AGAATTACCAAAATAC 1 CCCTAGATTGTGA-AATTACCAAAATAC * * 71446201 CCCTAGTTTGTAAAATTACCAAAATAC 1 CCCTAGATTGTGAAATTACCAAAATAC * * 71446228 CACTAGTTTGTGAAATTACCAAAATAC 1 CCCTAGATTGTGAAATTACCAAAATAC * * 71446255 CCTTA-ATTTGTAAAATTACCAAAATAC 1 CCCTAGA-TTGTGAAATTACCAAAATAC 71446282 CCCTA 1 CCCTA 71446287 ATTTACTAAA Statistics Matches: 93, Mismatches: 17, Indels: 6 0.80 0.15 0.05 Matches are distributed among these distances: 26 1 0.01 27 91 0.98 28 1 0.01 ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29 Consensus pattern (27 bp): CCCTAGATTGTGAAATTACCAAAATAC Found at i:71446228 original size:54 final size:54 Alignment explanation
Indices: 71446154--71446286 Score: 162 Period size: 54 Copynumber: 2.5 Consensus size: 54 71446144 TTACCCTCGA * ** * 71446154 TTGTGAAATTACTGAAATACCCCTA-TAGGGT-AGAATTACCAAAATACCCCTAGT 1 TTGTAAAATTACCAAAATACCCCTAGT-GGGTGA-AATTACCAAAATACCCCTAAT * ** * 71446208 TTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCAAAATACCCTTAAT 1 TTGTAAAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAATACCCCTAAT 71446262 TTGTAAAATTACCAAAATACCCCTA 1 TTGTAAAATTACCAAAATACCCCTA 71446287 ATTTACTAAA Statistics Matches: 68, Mismatches: 9, Indels: 4 0.84 0.11 0.05 Matches are distributed among these distances: 54 66 0.97 55 2 0.03 ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29 Consensus pattern (54 bp): TTGTAAAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAATACCCCTAAT Found at i:71446298 original size:54 final size:54 Alignment explanation
Indices: 71446187--71446312 Score: 175 Period size: 54 Copynumber: 2.3 Consensus size: 54 71446177 TATAGGGTAG * * * * 71446187 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGA 1 AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCACTAATTTCTGA * 71446241 AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACT-A 1 AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCACTAATTT-CTGA 71446295 AATTA-CAGAAATACCCTT 1 AATTACCA-AAATACCCTT 71446313 GACTTTCTAA Statistics Matches: 65, Mismatches: 5, Indels: 4 0.88 0.07 0.05 Matches are distributed among these distances: 53 2 0.03 54 62 0.95 55 1 0.02 ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30 Consensus pattern (54 bp): AATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCACTAATTTCTGA Found at i:71446300 original size:27 final size:27 Alignment explanation
Indices: 71446187--71446290 Score: 163 Period size: 27 Copynumber: 3.9 Consensus size: 27 71446177 TATAGGGTAG * 71446187 AATTACCAAAATACCCCTAGTTTGTAA 1 AATTACCAAAATACCCCTAATTTGTAA * * * 71446214 AATTACCAAAATACCACTAGTTTGTGA 1 AATTACCAAAATACCCCTAATTTGTAA * 71446241 AATTACCAAAATACCCTTAATTTGTAA 1 AATTACCAAAATACCCCTAATTTGTAA 71446268 AATTACCAAAATACCCCTAATTT 1 AATTACCAAAATACCCCTAATTT 71446291 ACTAAATTAC Statistics Matches: 70, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 27 70 1.00 ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31 Consensus pattern (27 bp): AATTACCAAAATACCCCTAATTTGTAA Found at i:71446306 original size:27 final size:27 Alignment explanation
Indices: 71446187--71446324 Score: 145 Period size: 27 Copynumber: 5.1 Consensus size: 27 71446177 TATAGGGTAG * * 71446187 AATTACCAAAATACCCCTAGTTTGTAA 1 AATTACCAAAATACCCCTAATTTCTAA * * * * 71446214 AATTACCAAAATACCACTAGTTTGTGA 1 AATTACCAAAATACCCCTAATTTCTAA * * 71446241 AATTACCAAAATACCCTTAATTTGTAA 1 AATTACCAAAATACCCCTAATTTCTAA 71446268 AATTACCAAAATACCCCTAATTTACT-A 1 AATTACCAAAATACCCCTAATTT-CTAA * * 71446295 AATTA-CAGAAATACCCTTGACTTTCTAA 1 AATTACCA-AAATACCCCT-AATTTCTAA 71446323 AA 1 AA 71446325 ATTATAGAAA Statistics Matches: 97, Mismatches: 10, Indels: 7 0.85 0.09 0.06 Matches are distributed among these distances: 26 2 0.02 27 87 0.90 28 8 0.08 ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30 Consensus pattern (27 bp): AATTACCAAAATACCCCTAATTTCTAA Found at i:71446491 original size:27 final size:27 Alignment explanation
Indices: 71446414--71446491 Score: 88 Period size: 27 Copynumber: 2.9 Consensus size: 27 71446404 AAATGACTAA * * 71446414 AATACCCCT-AATAGGTAAAAAGACCGT 1 AATACCCCTGTAT-GGTAAAATGACCGT * * 71446441 AA-AGCCCCTGTAGGGTAAAGTGACCGT 1 AATA-CCCCTGTATGGTAAAATGACCGT 71446468 AATACCCCTGTATGGTAAAATGAC 1 AATACCCCTGTATGGTAAAATGAC 71446492 GAATATTCCC Statistics Matches: 42, Mismatches: 6, Indels: 6 0.78 0.11 0.11 Matches are distributed among these distances: 26 1 0.02 27 39 0.93 28 2 0.05 ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21 Consensus pattern (27 bp): AATACCCCTGTATGGTAAAATGACCGT Found at i:71447614 original size:16 final size:16 Alignment explanation
Indices: 71447593--71447646 Score: 67 Period size: 16 Copynumber: 3.5 Consensus size: 16 71447583 GAGCCTAGGG 71447593 GCAAAAGTGTAAATAT 1 GCAAAAGTGTAAATAT * * * 71447609 GCAAAAGT-T-TAGAG 1 GCAAAAGTGTAAATAT 71447623 GCAAAAGTGTAAATAT 1 GCAAAAGTGTAAATAT 71447639 GCAAAAGT 1 GCAAAAGT 71447647 TTAGGGGCAA Statistics Matches: 30, Mismatches: 6, Indels: 4 0.75 0.15 0.10 Matches are distributed among these distances: 14 10 0.33 15 2 0.07 16 18 0.60 ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22 Consensus pattern (16 bp): GCAAAAGTGTAAATAT Found at i:71447626 original size:30 final size:30 Alignment explanation
Indices: 71447592--71447657 Score: 123 Period size: 30 Copynumber: 2.2 Consensus size: 30 71447582 CGAGCCTAGG 71447592 GGCAAAAGTGTAAATATGCAAAAGTTTAGA 1 GGCAAAAGTGTAAATATGCAAAAGTTTAGA * 71447622 GGCAAAAGTGTAAATATGCAAAAGTTTAGG 1 GGCAAAAGTGTAAATATGCAAAAGTTTAGA 71447652 GGCAAA 1 GGCAAA 71447658 TTGTAATTTT Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 30 35 1.00 ACGTcount: A:0.45, C:0.08, G:0.26, T:0.21 Consensus pattern (30 bp): GGCAAAAGTGTAAATATGCAAAAGTTTAGA Found at i:71450171 original size:22 final size:22 Alignment explanation
Indices: 71450141--71450186 Score: 83 Period size: 22 Copynumber: 2.1 Consensus size: 22 71450131 ATGTTTTGGG * 71450141 CTTCGTAGACTCAAATAAGGGA 1 CTTCATAGACTCAAATAAGGGA 71450163 CTTCATAGACTCAAATAAGGGA 1 CTTCATAGACTCAAATAAGGGA 71450185 CT 1 CT 71450187 ATGTGTAAGT Statistics Matches: 23, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 22 23 1.00 ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24 Consensus pattern (22 bp): CTTCATAGACTCAAATAAGGGA Found at i:71450885 original size:25 final size:25 Alignment explanation
Indices: 71450847--71450916 Score: 122 Period size: 25 Copynumber: 2.8 Consensus size: 25 71450837 AGGAAGTGCT * * 71450847 AAAAGGGCTATGCCCCAGTTTACCG 1 AAAAGGGCTTTGCCCCAGTTTACCA 71450872 AAAAGGGCTTTGCCCCAGTTTACCA 1 AAAAGGGCTTTGCCCCAGTTTACCA 71450897 AAAAGGGCTTTGCCCCAGTT 1 AAAAGGGCTTTGCCCCAGTT 71450917 ATTAAAAGAG Statistics Matches: 43, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 25 43 1.00 ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23 Consensus pattern (25 bp): AAAAGGGCTTTGCCCCAGTTTACCA Found at i:71450929 original size:24 final size:24 Alignment explanation
Indices: 71450845--71450941 Score: 97 Period size: 25 Copynumber: 3.9 Consensus size: 24 71450835 GGAGGAAGTG 71450845 CTAAAAGGGCTATGCCCCAGTTTA 1 CTAAAAGGGCTATGCCCCAGTTTA * * 71450869 CCGAAAAGGGCTTTGCCCCAGTTTA 1 -CTAAAAGGGCTATGCCCCAGTTTA * * 71450894 CCAAAAAGGGCTTTGCCCCAG-TTA 1 -CTAAAAGGGCTATGCCCCAGTTTA * * 71450918 TTAAAAGAGGCTAGGCCTCCAGTT 1 CTAAAAG-GGCTATGCC-CCAGTT 71450942 ATATGATAAA Statistics Matches: 62, Mismatches: 7, Indels: 5 0.84 0.09 0.07 Matches are distributed among these distances: 23 5 0.08 24 10 0.16 25 46 0.74 26 1 0.02 ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24 Consensus pattern (24 bp): CTAAAAGGGCTATGCCCCAGTTTA Found at i:71450940 original size:50 final size:50 Alignment explanation
Indices: 71450847--71450941 Score: 113 Period size: 50 Copynumber: 1.9 Consensus size: 50 71450837 AGGAAGTGCT ** 71450847 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCA 1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTACCA * ** 71450897 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT 1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT 71450942 ATATGATAAA Statistics Matches: 38, Mismatches: 5, Indels: 4 0.81 0.11 0.09 Matches are distributed among these distances: 48 5 0.13 49 10 0.26 50 23 0.61 ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23 Consensus pattern (50 bp): AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTACCA Found at i:71451183 original size:31 final size:31 Alignment explanation
Indices: 71451147--71451218 Score: 128 Period size: 31 Copynumber: 2.4 Consensus size: 31 71451137 AAGGCATCAA * 71451147 CCAGTGATATGATTTATGAAAAGGCTTTGGC 1 CCAGTGATATGATTTATGAAAAGGCTTCGGC 71451178 CCAGTGATATGATTTATGAAAAGGCTTCGGC 1 CCAGTGATATGATTTATGAAAAGGCTTCGGC 71451209 CCAGT-ATATG 1 CCAGTGATATG 71451219 TCGAGACTGA Statistics Matches: 40, Mismatches: 1, Indels: 1 0.95 0.02 0.02 Matches are distributed among these distances: 30 5 0.12 31 35 0.88 ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31 Consensus pattern (31 bp): CCAGTGATATGATTTATGAAAAGGCTTCGGC Found at i:71453564 original size:52 final size:52 Alignment explanation
Indices: 71453431--71453588 Score: 185 Period size: 52 Copynumber: 3.0 Consensus size: 52 71453421 CACGGATCAT * * * 71453431 ATATCATACCGATGCCATATCCCAGATATGGTCTTATACGGAATCACATTATC 1 ATATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACA-TATC * * * * 71453484 ATATCACACCGGTACCATAGCCCAGCTATGGTCTTATACAGGAA-CACAAATC 1 ATATCATACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAAGCACATATC * * * 71453536 ATA-CTGTACCGATGCCATAGCTCTGCTATGGTCTTATACGGAAGCACATATC 1 ATATC-ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATATC 71453588 A 1 A 71453589 CATCTTTTCT Statistics Matches: 89, Mismatches: 13, Indels: 7 0.82 0.12 0.06 Matches are distributed among these distances: 51 5 0.06 52 42 0.47 53 38 0.43 54 4 0.04 ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27 Consensus pattern (52 bp): ATATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCACATATC Found at i:71459522 original size:27 final size:27 Alignment explanation
Indices: 71459340--71459875 Score: 154 Period size: 27 Copynumber: 19.9 Consensus size: 27 71459330 TTAGTTTACC * * 71459340 AAATTACCAAAATA-CCTCTATTTTGTA 1 AAATTACCAAAATACCCTCGA-CTTGTA * 71459367 AAACTACCAAAATACCC-CTG-CTTTGTA 1 AAATTACCAAAATACCCTC-GAC-TTGTA * * * 71459394 AAATTATCAAAATACCCGTAG-TTTGTA 1 AAATTACCAAAATACCC-TCGACTTGTA * * 71459421 AAATTACCAAAATACCCAT-GATTTGTG 1 AAATTACCAAAATACCC-TCGACTTGTA ** * 71459448 AAATTACTGAAATACCCTCGACCTGTA 1 AAATTACCAAAATACCCTCGACTTGTA * ** 71459475 AACTTATTAAAATACCCTCGACTTGTA 1 AAATTACCAAAATACCCTCGACTTGTA * * 71459502 AAATTACCAAAGTACCTTCGA-TT-TA 1 AAATTACCAAAATACCCTCGACTTGTA * **** 71459527 CATAATTATCGGTTTACCCTCGA-TT-TA 1 -A-AATTACCAAAATACCCTCGACTTGTA **** * * 71459554 CAGAATTACCGTTTTACCCTCGATTTATA 1 -A-AATTACCAAAATACCCTCGACTTGTA * * *** * 71459583 GAATTACTATTTTACCCTTGA-TT-TA 1 AAATTACCAAAATACCCTCGACTTGTA ***** * * ** 71459608 CAGAATTACTGTTTTACCTTTGA-TTCACA 1 -A-AATTACCAAAATACCCTCGACTT-GTA * * ** ** 71459637 AAATTACTAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCTCGACTTGTA * 71459664 AAATTACCAAAATACCCTCGA-TCAGTA 1 AAATTACCAAAATACCCTCGACT-TGTA * * * * 71459691 AAATTACCAAATTACCCTGGTC-TATA 1 AAATTACCAAAATACCCTCGACTTGTA * ** 71459717 AAATTACTAAAATACCC-CTGGTTTGTA 1 AAATTACCAAAATACCCTC-GACTTGTA * * * 71459744 AAATTACCATAATATCCCTAG-TTTGTA 1 AAATTACCAAAATA-CCCTCGACTTGTA ** * 71459771 AAATTACCAAAATACCACT-GGTTTGTG 1 AAATTACCAAAATACC-CTCGACTTGTA * ** * 71459798 AAATTACCAGAATACCCTTAATTTGTA 1 AAATTACCAAAATACCCTCGACTTGTA * ** 71459825 AAATTACCAAAATACCC-CTGATTTACA 1 AAATTACCAAAATACCCTC-GACTTGTA * * 71459852 AAATTACAAAAATACCCTTGACTT 1 AAATTACCAAAATACCCTCGACTT 71459876 TCTAAAAATT Statistics Matches: 401, Mismatches: 81, Indels: 54 0.75 0.15 0.10 Matches are distributed among these distances: 25 4 0.01 26 31 0.08 27 351 0.88 28 12 0.03 29 3 0.01 ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33 Consensus pattern (27 bp): AAATTACCAAAATACCCTCGACTTGTA Found at i:71459694 original size:54 final size:54 Alignment explanation
Indices: 71459636--71459871 Score: 228 Period size: 54 Copynumber: 4.4 Consensus size: 54 71459626 TTTGATTCAC * * * 71459636 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGT 1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCT-GATTAGT * * * * * 71459690 AAAATTACCAAATTACCC-TGGTCTATAAAATTACTAAAATACCCCTGGTTTGT 1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATTAGT * * * * * * 71459743 AAAATTACCATAATATCCC-TAGTTTGTAAAATTACCAAAATACCACTGGTTTGT 1 AAAATTACCAAAATA-CCCTTGGTTTATAAAATTACCAAAATACCCCTGATTAGT * * ** * * 71459797 GAAATTACCAGAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTA-C 1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGA-TTAGT * 71459851 AAAATTACAAAAATACCCTTG 1 AAAATTACCAAAATACCCTTG 71459872 ACTTTCTAAA Statistics Matches: 152, Mismatches: 26, Indels: 8 0.82 0.14 0.04 Matches are distributed among these distances: 53 40 0.26 54 110 0.72 55 2 0.01 ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30 Consensus pattern (54 bp): AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATTAGT Found at i:71459706 original size:81 final size:81 Alignment explanation
Indices: 71459628--71459952 Score: 252 Period size: 80 Copynumber: 4.0 Consensus size: 81 71459618 GTTTTACCTT * * 71459628 TGATTC-ACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAA 1 TGATTCTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGTAA * 71459692 AATTACCAAATTACCC 66 AATTACCAAAATACCC * * ** * * * 71459708 TG-GTCTATAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCATAATATCCCTAG-TTTGTA 1 TGATTCTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATTAGTA 71459771 AAATTACCAAAATACCAC 65 AAATTACCAAAATACC-C * * * * * ** ** * 71459789 TGGTT-TGTGAAATTACCAGAATACCCTTAATTTGTAAAATTACCAAAATACCC-CTGATTTA-C 1 TGATTCTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTC-GA-TTAGT * 71459851 AAAATTACAAAAATACCC 64 AAAATTACCAAAATACCC * ** * * * 71459869 TTGACTTTCTA-AAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTT 1 -TGA--TTCTATAAAATTACTA-AAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTA * * * 71459932 GTAGATTTACCAAAACACCC 62 GTAAAATTACCAAAATACCC 71459952 T 1 T 71459953 TGTAGGGTGA Statistics Matches: 188, Mismatches: 43, Indels: 26 0.73 0.17 0.10 Matches are distributed among these distances: 79 2 0.01 80 65 0.35 81 63 0.34 82 7 0.04 83 50 0.27 84 1 0.01 ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31 Consensus pattern (81 bp): TGATTCTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGTAA AATTACCAAAATACCC Found at i:71459919 original size:27 final size:27 Alignment explanation
Indices: 71459880--71459931 Score: 79 Period size: 27 Copynumber: 1.9 Consensus size: 27 71459870 TGACTTTCTA 71459880 AAAATTATAGAAATACCATTGGTTTAC 1 AAAATTATAGAAATACCATTGGTTTAC * 71459907 AAAATTACT-GAAATACCCTTGGTTT 1 AAAATTA-TAGAAATACCATTGGTTT 71459932 GTAGATTTAC Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 27 22 0.96 28 1 0.04 ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35 Consensus pattern (27 bp): AAAATTATAGAAATACCATTGGTTTAC Found at i:71460049 original size:27 final size:27 Alignment explanation
Indices: 71459985--71460049 Score: 76 Period size: 27 Copynumber: 2.4 Consensus size: 27 71459975 ACCCCTATTA * * 71459985 GGTAAAAAGACCGTAAAGCCCCTGTAG 1 GGTAAAATGACCGTAAAGACCCTGTAG * ** * 71460012 GGTAAAGTGACCGTAATTACCCTGTAT 1 GGTAAAATGACCGTAAAGACCCTGTAG 71460039 GGTAAAATGAC 1 GGTAAAATGAC 71460050 GAATATGCCC Statistics Matches: 31, Mismatches: 7, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 27 31 1.00 ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22 Consensus pattern (27 bp): GGTAAAATGACCGTAAAGACCCTGTAG Found at i:71460896 original size:25 final size:24 Alignment explanation
Indices: 71460858--71460926 Score: 93 Period size: 25 Copynumber: 2.8 Consensus size: 24 71460848 AGGAAGTGCT * 71460858 AAAAGGGCTATGCCCCAGTTTACC 1 AAAAGGGCTTTGCCCCAGTTTACC * * 71460882 GAAAAGGGATTTGCCCCAGTTTATC 1 -AAAAGGGCTTTGCCCCAGTTTACC * 71460907 AAAAGGGCTTTGCCCTAGTT 1 AAAAGGGCTTTGCCCCAGTT 71460927 AATAAAAGAG Statistics Matches: 39, Mismatches: 5, Indels: 1 0.87 0.11 0.02 Matches are distributed among these distances: 24 18 0.46 25 21 0.54 ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26 Consensus pattern (24 bp): AAAAGGGCTTTGCCCCAGTTTACC Found at i:71460918 original size:24 final size:24 Alignment explanation
Indices: 71460858--71460939 Score: 94 Period size: 24 Copynumber: 3.4 Consensus size: 24 71460848 AGGAAGTGCT * * 71460858 AAAAGGGCTATGCCCCAGTTTACC 1 AAAAGGGCTTTGCCCCAGTTTATC * 71460882 GAAAAGGGATTTGCCCCAGTTTATC 1 -AAAAGGGCTTTGCCCCAGTTTATC * * 71460907 AAAAGGGCTTTGCCCTAGTTAAT- 1 AAAAGGGCTTTGCCCCAGTTTATC 71460930 AAAAGAGGCT 1 AAAAG-GGCT 71460940 AGGCCTCCAG Statistics Matches: 50, Mismatches: 6, Indels: 3 0.85 0.10 0.05 Matches are distributed among these distances: 23 5 0.10 24 24 0.48 25 21 0.42 ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24 Consensus pattern (24 bp): AAAAGGGCTTTGCCCCAGTTTATC Found at i:71461180 original size:31 final size:31 Alignment explanation
Indices: 71461145--71461316 Score: 272 Period size: 31 Copynumber: 5.5 Consensus size: 31 71461135 CATTTACAAT * 71461145 AAAGGCTTCGGCCCAATGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * * 71461176 AAAGGCTTCGGCGCAGAGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * * 71461207 TAAGGCTTCGGCCTAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * 71461238 TAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * * 71461269 TAAGGCTTCGGCCTAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA 71461300 AAAGGCTTCGGCCCAGT 1 AAAGGCTTCGGCCCAGT 71461317 AACCGTTAAA Statistics Matches: 130, Mismatches: 11, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 31 130 1.00 ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTGATATGATTTATGA Found at i:71463612 original size:27 final size:27 Alignment explanation
Indices: 71463590--71464118 Score: 261 Period size: 27 Copynumber: 19.6 Consensus size: 27 71463580 TTAGTTTACC 71463590 AAATTACCAAAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * 71463617 AAACTACCAAAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * * * 71463644 AAATTATCAAAATATCCTTAGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * * 71463671 AAATTACCAAAATACCCCTAATTTGTG 1 AAATTACCAAAATACCCCTAGTTTGTA *** * ** 71463698 AAATTATTGAAATA-CCCTCGACCTGTA 1 AAATTACCAAAATACCCCTAG-TTTGTA * ** * * 71463725 AACTTATTAAAATA-CCCTCGACTTGTA 1 AAATTACCAAAATACCCCTAG-TTTGTA * * ** 71463752 AAATTACCAAAGTA-CCCTCAATTTACA 1 AAATTACCAAAATACCCCT-AGTTTGTA * *** * * 71463779 TAATTACCATTTTA-CCCTCGATT-TA 1 AAATTACCAAAATACCCCTAGTTTGTA *** * * 71463804 CAGAATTACCATTTTA-CCCTCGATTTATA 1 -A-AATTACCAAAATACCCCTAG-TTTGTA * * *** * * 71463833 GAATTACTATTTTA-CCCTTGATT-TA 1 AAATTACCAAAATACCCCTAGTTTGTA ***** * * 71463858 CAGAATTACTGTTTTA-CCCTCGATTTATA 1 -A-AATTACCAAAATACCCCTAG-TTTGTA * * * ** 71463887 AAATTACTAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCCTAGTTTGTA * ** 71463914 AAATTACCAAAATA-CCCTCGATCAGTA 1 AAATTACCAAAATACCCCTAG-TTTGTA * * * * 71463941 AAATTACCAAATTA-CCCTGGTCTATA 1 AAATTACCAAAATACCCCTAGTTTGTA * * 71463967 AAATTACTAAAATACCCCTGGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * 71463994 AAATTACCATAATACCCCTAGTTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * * * 71464021 AAATTACCAAAATACCACTGGTTTGTG 1 AAATTACCAAAATACCCCTAGTTTGTA * * 71464048 AAATTACCAAAATACCCTTAATTTGTA 1 AAATTACCAAAATACCCCTAGTTTGTA * ** 71464075 AAATTACCAAAATACCCCTAATTTACA 1 AAATTACCAAAATACCCCTAGTTTGTA * 71464102 AAATTACAAAAATACCC 1 AAATTACCAAAATACCC 71464119 TTGACTTTCT Statistics Matches: 403, Mismatches: 86, Indels: 26 0.78 0.17 0.05 Matches are distributed among these distances: 25 3 0.01 26 28 0.07 27 359 0.89 28 9 0.02 29 4 0.01 ACGTcount: A:0.39, C:0.22, G:0.07, T:0.33 Consensus pattern (27 bp): AAATTACCAAAATACCCCTAGTTTGTA Found at i:71463930 original size:54 final size:54 Alignment explanation
Indices: 71463590--71464132 Score: 294 Period size: 54 Copynumber: 10.1 Consensus size: 54 71463580 TTAGTTTACC * * * * * 71463590 AAATTACCAAAATACCC-CTAGTTTGTAAAACTACCAAAATACCCCT-AGTTTGTA 1 AAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACCCTTGA-TTTATA * * * * * * * * 71463644 AAATTATCAAAATATCCT-TAGTTTGTAAAATTACCAAAATACCCCTAATTTGTG 1 AAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACCCTTGATTTATA *** ** * * ** * * * 71463698 AAATTATTGAAATACCCTCGACCTGTAAACTTATTAAAATACCCTCGACTTGTA 1 AAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTATA * * * * *** * * 71463752 AAATTACCAAAGTACCCTCAATTTACATAATTACCATTTTACCCTCGATTTACA 1 AAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTATA * *** * * *** * 71463806 GAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACA 1 AAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTATA * ***** * * * 71463860 GAATTACTGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACA 1 AAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTATA * * * * 71463914 AAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAATTACCC-TGGTCTATA 1 AAATTACCAAAATACCCTCGATTTA-TAAAATTACCAAAATACCCTTGATTTATA * * * * * * 71463967 AAATTACTAAAATACCC-CTGGTTTGTAAAATTACCATAATACCCCT-AGTTTGTA 1 AAATTACCAAAATACCCTC-GATTTATAAAATTACCAAAATACCCTTGA-TTTATA * * * * * 71464021 AAATTACCAAAATACCACT-GGTTTGTGAAATTACCAAAATACCCTTAATTTGTA 1 AAATTACCAAAATACC-CTCGATTTATAAAATTACCAAAATACCCTTGATTTATA * * * * 71464075 AAATTACCAAAATACCC-CTAATTTACAAAATTACAAAAATACCCTTGACTTTCTA 1 AAATTACCAAAATACCCTC-GATTTATAAAATTACCAAAATACCCTTGA-TTTATA 71464130 AAA 1 AAA 71464133 ATTATAGAAA Statistics Matches: 390, Mismatches: 85, Indels: 27 0.78 0.17 0.05 Matches are distributed among these distances: 52 1 0.00 53 44 0.11 54 333 0.85 55 12 0.03 ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33 Consensus pattern (54 bp): AAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTATA Found at i:71463930 original size:81 final size:80 Alignment explanation
Indices: 71463723--71464164 Score: 248 Period size: 81 Copynumber: 5.5 Consensus size: 80 71463713 CCTCGACCTG * * * ** * * * 71463723 TAAACTTATTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTACATAATTACCA 1 TAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTTACA-AATTACCA 71463788 TTTTACCCTCGATTTA 65 TTTTACCCTCGATTTA * * * *** * * * * *** * ** 71463804 CAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTG 1 TAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTTACA-AATTACCA 71463869 TTTTACCCTCGATTTA 65 TTTTACCCTCGATTTA * * 71463885 TAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTA-AAATTACC 1 TAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGAT--TTACAAATTACC ** * * 71463949 AAATTACCCT-GGTCTA 64 ATTTTACCCTCGATTTA * * * * * 71463965 TAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCATAATACCCCTAGTTTGTA-AAATTACC 1 TAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATA-CCCTCGATT-TACAAATTACC *** * * 71464029 AAAATACCACT-GGTTTG 64 ATTTTACC-CTCGATTTA * * ** * * * 71464046 TGAAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCC-CTAATTTACAAAATTACA 1 TAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTC-GATTTAC-AAATTACC *** * * 71464110 AAAATACCCTTGACTTTC 64 ATTTTACCCTCGA-TTTA * * 71464128 TAAAAATTA-TAGAAATACCATTGGTTTACAAAATTAC 1 T-AAAATTACTA-AAATACCCTTGGTTTATAAAATTAC 71464165 TGAAATTCCC Statistics Matches: 278, Mismatches: 71, Indels: 22 0.75 0.19 0.06 Matches are distributed among these distances: 79 2 0.01 80 67 0.24 81 175 0.63 82 6 0.02 83 28 0.10 ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33 Consensus pattern (80 bp): TAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTTACAAATTACCAT TTTACCCTCGATTTA Found at i:71463989 original size:80 final size:81 Alignment explanation
Indices: 71463883--71464092 Score: 271 Period size: 80 Copynumber: 2.6 Consensus size: 81 71463873 ACCCTCGATT ** 71463883 TATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTA 1 TATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTA * 71463947 CCAAATTACC-CTGGTC 65 CCAAAATACCACTGGTC * * * ** 71463963 TATAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCATAATACCCCTAGTTTGTAAAATTAC 1 TATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTAC * 71464028 CAAAATACCACTGGTT 66 CAAAATACCACTGGTC * * * ** 71464044 TGTGAAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAATACCCC 1 TATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCC 71464093 TAATTTACAA Statistics Matches: 112, Mismatches: 16, Indels: 3 0.85 0.12 0.02 Matches are distributed among these distances: 79 2 0.02 80 63 0.56 81 47 0.42 ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30 Consensus pattern (81 bp): TATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTAC CAAAATACCACTGGTC Found at i:71464169 original size:27 final size:27 Alignment explanation
Indices: 71464130--71464181 Score: 70 Period size: 27 Copynumber: 1.9 Consensus size: 27 71464120 TGACTTTCTA 71464130 AAAATTATAGAAATACCATTGGTTTAC 1 AAAATTATAGAAATACCATTGGTTTAC * * 71464157 AAAATTACT-GAAATTCCCTTGGTTT 1 AAAATTA-TAGAAATACCATTGGTTT 71464182 GTAGATTTAC Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 27 21 0.95 28 1 0.05 ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37 Consensus pattern (27 bp): AAAATTATAGAAATACCATTGGTTTAC Found at i:71464282 original size:26 final size:27 Alignment explanation
Indices: 71464235--71464298 Score: 85 Period size: 26 Copynumber: 2.4 Consensus size: 27 71464225 ACCCCTATTA * * 71464235 GGTAAAAAGATCGTAAAGCCCCTGTAG 1 GGTAAAATGACCGTAAAGCCCCTGTAG * * 71464262 GGTAAAGTGACCGTAAA-CCCCTGTAT 1 GGTAAAATGACCGTAAAGCCCCTGTAG 71464288 GGTAAAATGAC 1 GGTAAAATGAC 71464299 GAATATGCCC Statistics Matches: 32, Mismatches: 5, Indels: 1 0.84 0.13 0.03 Matches are distributed among these distances: 26 18 0.56 27 14 0.44 ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20 Consensus pattern (27 bp): GGTAAAATGACCGTAAAGCCCCTGTAG Found at i:71465180 original size:23 final size:24 Alignment explanation
Indices: 71465105--71465186 Score: 103 Period size: 25 Copynumber: 3.4 Consensus size: 24 71465095 AGGAAGTGCT * * 71465105 AAAAGGGCTATGCCCCAGTTTACC 1 AAAAGGGCTTTGCCCCAGTTTATC 71465129 GAAAAGGGCTTTGCCCCAGTTTATC 1 -AAAAGGGCTTTGCCCCAGTTTATC * * 71465154 AAAAGGGCTTTGTCCCAG-TTATT 1 AAAAGGGCTTTGCCCCAGTTTATC 71465177 AAAAGAGGCT 1 AAAAG-GGCT 71465187 AGGCCTCCAG Statistics Matches: 52, Mismatches: 4, Indels: 3 0.88 0.07 0.05 Matches are distributed among these distances: 23 9 0.17 24 21 0.40 25 22 0.42 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26 Consensus pattern (24 bp): AAAAGGGCTTTGCCCCAGTTTATC Found at i:71465427 original size:31 final size:31 Alignment explanation
Indices: 71465393--71465749 Score: 543 Period size: 31 Copynumber: 11.5 Consensus size: 31 71465383 ATTTACAGTA * * 71465393 AAGGCTTCGGCCCAATGATATGATTTATGAA 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * * * 71465424 AAGGCTTTGGCCTAGAGATATGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * * 71465455 AAGACTTTGGCCCAGTGATATGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT 71465486 AAGGCTTCGGCCCAGTGATATGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT ** * 71465517 AAGGCTTCTACCCAATGATATGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * * 71465548 AAGGCTTCGGCCTAGTGATATGATTTATGAA 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * * 71465579 AAGGCTTCGGCCCAGAGATGTGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * 71465610 AAGGCTTCGGCCTAGTGATATGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT 71465641 AAGGCTTCGGCCCAGTGATATGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * 71465672 AAGGCTTTGGCCCAGTGATATGATTTATGAT 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * * 71465703 AAGGCTTCGGCCTAGTGATATGATTTATGAA 1 AAGGCTTCGGCCCAGTGATATGATTTATGAT * 71465734 AAAGCTTCGGCCCAGT 1 AAGGCTTCGGCCCAGT 71465750 AACCGTTAAA Statistics Matches: 294, Mismatches: 32, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 31 294 1.00 ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32 Consensus pattern (31 bp): AAGGCTTCGGCCCAGTGATATGATTTATGAT Found at i:71469637 original size:25 final size:25 Alignment explanation
Indices: 71469603--71469671 Score: 77 Period size: 25 Copynumber: 2.7 Consensus size: 25 71469593 TTTTATCAAA * 71469603 AATTCAATTAGTATAAAATATT-AAT 1 AATTCAATTAAT-TAAAATATTAAAT * 71469628 AATTCAATTAATTAAAATTTTAAAT 1 AATTCAATTAATTAAAATATTAAAT * * 71469653 AATTAAATAAAATTAAAAT 1 AATTCAAT-TAATTAAAAT 71469672 TTAGGAGGAA Statistics Matches: 38, Mismatches: 4, Indels: 3 0.84 0.09 0.07 Matches are distributed among these distances: 24 8 0.21 25 21 0.55 26 9 0.24 ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39 Consensus pattern (25 bp): AATTCAATTAATTAAAATATTAAAT Found at i:71476186 original size:33 final size:33 Alignment explanation
Indices: 71476144--71476252 Score: 107 Period size: 33 Copynumber: 3.3 Consensus size: 33 71476134 TATGTAAGTT * * 71476144 CATAGTTGGGCTATAGCATTCTTATGATAATAC 1 CATAATTGGGCTATAGCATTCTTATGATAAGAC * * 71476177 CATAATTGGGTTATGGCA--C-TATGGACGTAAGAC 1 CATAATTGGGCTATAGCATTCTTAT-GA--TAAGAC * * * 71476210 CATAGTTAGGCTATAGCATTCTGATGATAAGAC 1 CATAATTGGGCTATAGCATTCTTATGATAAGAC 71476243 CATAATTGGG 1 CATAATTGGG 71476253 TTATGGCACT Statistics Matches: 59, Mismatches: 11, Indels: 12 0.72 0.13 0.15 Matches are distributed among these distances: 30 3 0.05 31 3 0.05 33 48 0.81 35 3 0.05 36 2 0.03 ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31 Consensus pattern (33 bp): CATAATTGGGCTATAGCATTCTTATGATAAGAC Found at i:71476215 original size:66 final size:66 Alignment explanation
Indices: 71476144--71476278 Score: 216 Period size: 66 Copynumber: 2.0 Consensus size: 66 71476134 TATGTAAGTT * * * * * 71476144 CATAGTTGGGCTATAGCATTCTTATGATAATACCATAATTGGGTTATGGCACTATGGACGTAAGA 1 CATAGTTAGGCTATAGCATTCTGATGATAAGACCATAATTGGGTTATGGCACTACGAACGTAAGA 71476209 C 66 C * 71476210 CATAGTTAGGCTATAGCATTCTGATGATAAGACCATAATTGGGTTATGGCACTACGAATGTAAGA 1 CATAGTTAGGCTATAGCATTCTGATGATAAGACCATAATTGGGTTATGGCACTACGAACGTAAGA 71476275 C 66 C 71476276 CAT 1 CAT 71476279 GTCAGGGCCA Statistics Matches: 63, Mismatches: 6, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 66 63 1.00 ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30 Consensus pattern (66 bp): CATAGTTAGGCTATAGCATTCTGATGATAAGACCATAATTGGGTTATGGCACTACGAACGTAAGA C Found at i:71476274 original size:33 final size:32 Alignment explanation
Indices: 71476175--71476278 Score: 102 Period size: 33 Copynumber: 3.2 Consensus size: 32 71476165 TTATGATAAT * * 71476175 ACCATAATTGGGTTATGGCACTATGGACGTAAG 1 ACCATAATTGGGTTATGGCACTA-CGATGTAAG * * * * * 71476208 ACCATAGTTAGGCTATAGCA-TTCTGATGATAAG 1 ACCATAATTGGGTTATGGCACTAC-GATG-TAAG 71476241 ACCATAATTGGGTTATGGCACTACGAATGTAAG 1 ACCATAATTGGGTTATGGCACTACG-ATGTAAG 71476274 ACCAT 1 ACCAT 71476279 GTCAGGGCCA Statistics Matches: 55, Mismatches: 12, Indels: 8 0.73 0.16 0.11 Matches are distributed among these distances: 32 4 0.07 33 46 0.84 34 5 0.09 ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28 Consensus pattern (32 bp): ACCATAATTGGGTTATGGCACTACGATGTAAG Found at i:71479433 original size:54 final size:54 Alignment explanation
Indices: 71479237--71479498 Score: 321 Period size: 54 Copynumber: 4.9 Consensus size: 54 71479227 TTTCCTTTTT * * * * * * * 71479237 GAACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT- 1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA * * ** * 71479290 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATA 1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA * * * * * 71479344 GTAACTCATCAATGCCATGGCTTGACATGGTCTTACATGATTTCCTTGCCGTATA 1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA * * 71479399 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA 1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA 71479453 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT 1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT 71479499 ATCTTACCAA Statistics Matches: 182, Mismatches: 23, Indels: 7 0.86 0.11 0.03 Matches are distributed among these distances: 52 2 0.01 53 42 0.23 54 93 0.51 55 43 0.24 56 2 0.01 ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36 Consensus pattern (54 bp): GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA Found at i:71479535 original size:47 final size:47 Alignment explanation
Indices: 71479477--71479642 Score: 248 Period size: 47 Copynumber: 3.6 Consensus size: 47 71479467 CATGCCTTGG * * 71479477 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA 1 CATGGTCTTACATGATATCCTTGTCTTACCAAGTGCCATGTTCCAAA * * 71479524 CATGGTTTTACATGGTATCCTTGTCTTACCAAGTGCCATGTTCCAAA 1 CATGGTCTTACATGATATCCTTGTCTTACCAAGTGCCATGTTCCAAA * * 71479571 CATGGTCTTAC---ATATCCTTGTCTTACCAAGTACAATGTTCCAAA 1 CATGGTCTTACATGATATCCTTGTCTTACCAAGTGCCATGTTCCAAA * 71479615 CATGGTCTTACATGGTATCCTTGTCTTA 1 CATGGTCTTACATGATATCCTTGTCTTA 71479643 GTGCCAATGT Statistics Matches: 107, Mismatches: 9, Indels: 6 0.88 0.07 0.05 Matches are distributed among these distances: 44 41 0.38 47 66 0.62 ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36 Consensus pattern (47 bp): CATGGTCTTACATGATATCCTTGTCTTACCAAGTGCCATGTTCCAAA Found at i:71479731 original size:47 final size:45 Alignment explanation
Indices: 71479646--71479766 Score: 109 Period size: 45 Copynumber: 2.6 Consensus size: 45 71479636 TGTCTTAGTG * * ** * * * 71479646 CCAATGTCATATCTTGATGTGGTCTTACATGGAGTCCTTAATCAATG 1 CCAATGCCATGTCTTGACATGGTCTTACACGGAGTCCTT--GCAATA * ** 71479693 CCGATGCCATGTCTTGACATGGTCTTACAC-GAGATCCTTGCCTTA 1 CCAATGCCATGTCTTGACATGGTCTTACACGGAG-TCCTTGCAATA * 71479738 CCAATGTCATGTCTTGACATGGTCTTACA 1 CCAATGCCATGTCTTGACATGGTCTTACA 71479767 TGGTATCCTT Statistics Matches: 61, Mismatches: 12, Indels: 4 0.79 0.16 0.05 Matches are distributed among these distances: 45 29 0.48 46 3 0.05 47 29 0.48 ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34 Consensus pattern (45 bp): CCAATGCCATGTCTTGACATGGTCTTACACGGAGTCCTTGCAATA Found at i:71486804 original size:28 final size:27 Alignment explanation
Indices: 71486703--71486804 Score: 71 Period size: 28 Copynumber: 3.5 Consensus size: 27 71486693 TCAGTGTTAA * * * 71486703 CTGGGCCTTAGCCTATATCAATATTAAT 1 CTGGGCC-TAGCCCATATCAGTATCAAT * 71486731 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT 1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT * 71486763 ATTGGGCCTAGCCCATATCAGTATCAAT 1 -CTGGGCCTAGCCCATATCAGTATCAAT 71486791 CTGGGCCGTAGCCC 1 CTGGGCC-TAGCCC 71486805 TATTACAAGT Statistics Matches: 58, Mismatches: 8, Indels: 16 0.71 0.10 0.20 Matches are distributed among these distances: 27 7 0.12 28 26 0.45 30 2 0.03 32 16 0.28 33 7 0.12 ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27 Consensus pattern (27 bp): CTGGGCCTAGCCCATATCAGTATCAAT Found at i:71486824 original size:60 final size:59 Alignment explanation
Indices: 71486704--71486840 Score: 152 Period size: 60 Copynumber: 2.3 Consensus size: 59 71486694 CAGTGTTAAC * * * 71486704 TGGGCCTTAGCCTATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT 1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT * * 71486765 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATAT 1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT * * 71486825 TGGGCCTTGGCCATAT 1 TGGGCCTAGCCCATAT 71486841 TAACACAGTT Statistics Matches: 66, Mismatches: 7, Indels: 7 0.82 0.09 0.09 Matches are distributed among these distances: 59 4 0.06 60 51 0.77 61 11 0.17 ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29 Consensus pattern (59 bp): TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT Found at i:71486887 original size:19 final size:20 Alignment explanation
Indices: 71486845--71486887 Score: 52 Period size: 19 Copynumber: 2.2 Consensus size: 20 71486835 CCATATTAAC ** * 71486845 ACAGTTCGGCCCATTTCAAT 1 ACAGTTCGGCCCATAACAAA 71486865 ACAGTT-GGCCCATAACAAA 1 ACAGTTCGGCCCATAACAAA 71486884 ACAG 1 ACAG 71486888 CCTCATATGA Statistics Matches: 20, Mismatches: 3, Indels: 1 0.83 0.12 0.04 Matches are distributed among these distances: 19 14 0.70 20 6 0.30 ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21 Consensus pattern (20 bp): ACAGTTCGGCCCATAACAAA Found at i:71489073 original size:19 final size:18 Alignment explanation
Indices: 71489036--71489079 Score: 54 Period size: 19 Copynumber: 2.4 Consensus size: 18 71489026 ATACATGCAG 71489036 TAAT-ATTTTTCTAATAA 1 TAATAATTTTTCTAATAA * 71489053 TAATAATTTTATCTCATAA 1 TAATAATTTT-TCTAATAA * 71489072 TACTAATT 1 TAATAATT 71489080 AAAATTTCGT Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 17 4 0.17 18 5 0.22 19 14 0.61 ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50 Consensus pattern (18 bp): TAATAATTTTTCTAATAA Found at i:71491191 original size:35 final size:35 Alignment explanation
Indices: 71491152--71491222 Score: 133 Period size: 35 Copynumber: 2.0 Consensus size: 35 71491142 GTTATGTGAA * 71491152 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG 1 TGATGTGTTCATTAACTGACCAGGATGTGGTAAGG 71491187 TGATGTGTTCATTAACTGACCAGGATGTGGTAAGG 1 TGATGTGTTCATTAACTGACCAGGATGTGGTAAGG 71491222 T 1 T 71491223 TATAAACAAG Statistics Matches: 35, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 35 35 1.00 ACGTcount: A:0.25, C:0.10, G:0.32, T:0.32 Consensus pattern (35 bp): TGATGTGTTCATTAACTGACCAGGATGTGGTAAGG Found at i:71492142 original size:2 final size:2 Alignment explanation
Indices: 71492135--71492161 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 71492125 ATGACATGTG 71492135 TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA T 71492162 GACTAGTCTC Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:71494635 original size:15 final size:16 Alignment explanation
Indices: 71494615--71494644 Score: 53 Period size: 15 Copynumber: 1.9 Consensus size: 16 71494605 AAGATCTTAT 71494615 AATCATAA-CTTACTC 1 AATCATAACCTTACTC 71494630 AATCATAACCTTACT 1 AATCATAACCTTACT 71494645 GATGGTTCAT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 8 0.57 16 6 0.43 ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33 Consensus pattern (16 bp): AATCATAACCTTACTC Found at i:71494905 original size:43 final size:42 Alignment explanation
Indices: 71494809--71494925 Score: 130 Period size: 43 Copynumber: 2.8 Consensus size: 42 71494799 CACACGGTAC * * * 71494809 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT 1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAGATCT * * * 71494851 CGTATCAATGCCAATAGCCCAGCTATGGTCTTACACGA-AGTCT 1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAGA-TCT * 71494894 CATAT-AGATGCCATATCCTAGATATGGTCTTA 1 CATATCA-ATGCCATATCCCAGATATGGTCTTA 71494926 TACATAGTCT Statistics Matches: 62, Mismatches: 10, Indels: 6 0.79 0.13 0.08 Matches are distributed among these distances: 42 29 0.47 43 33 0.53 ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29 Consensus pattern (42 bp): CATATCAATGCCATATCCCAGATATGGTCTTACACGAGATCT Found at i:71494935 original size:42 final size:42 Alignment explanation
Indices: 71494809--71494935 Score: 118 Period size: 42 Copynumber: 3.0 Consensus size: 42 71494799 CACACGGTAC * * 71494809 CATACCAATGCCATATCCCAGATATGGTC-T-TACATGGGATCT 1 CATATCAATGCCATATCCCAGATATGGTCTTATACAT-AG-TCT * * * * 71494851 CGTATCAATGCCAATAGCCCAGCTATGGTCTTACACGA-AGTCT 1 CATATCAATGCC-ATATCCCAGATATGGTCTTATAC-ATAGTCT * 71494894 CATAT-AGATGCCATATCCTAGATATGGTCTTATACATAGTCT 1 CATATCA-ATGCCATATCCCAGATATGGTCTTATACATAGTCT 71494936 TAGTAACACT Statistics Matches: 68, Mismatches: 11, Indels: 12 0.75 0.12 0.13 Matches are distributed among these distances: 41 1 0.01 42 35 0.51 43 27 0.40 44 2 0.03 45 2 0.03 46 1 0.01 ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30 Consensus pattern (42 bp): CATATCAATGCCATATCCCAGATATGGTCTTATACATAGTCT Found at i:71500083 original size:19 final size:20 Alignment explanation
Indices: 71500048--71500085 Score: 60 Period size: 19 Copynumber: 1.9 Consensus size: 20 71500038 TGATACTATG * 71500048 TGTATATAGCTTGATAAATC 1 TGTATATAGCATGATAAATC 71500068 TGTATATA-CATGATAAAT 1 TGTATATAGCATGATAAAT 71500086 GGACATGGAT Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 19 9 0.53 20 8 0.47 ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39 Consensus pattern (20 bp): TGTATATAGCATGATAAATC Found at i:71500574 original size:34 final size:34 Alignment explanation
Indices: 71500506--71500574 Score: 79 Period size: 34 Copynumber: 2.0 Consensus size: 34 71500496 GCTTGGTTTG * * 71500506 AGATGATGATATGATGAGTCTTGTGATATAAAAT 1 AGATGATGATATGATGAATCTAGTGATATAAAAT * 71500540 AGATGAT-ATTATGATGAAT-TAGTGAATATGAAAT 1 AGATGATGA-TATGATGAATCTAGTG-ATATAAAAT 71500574 A 1 A 71500575 TATGTAAGTT Statistics Matches: 30, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 33 5 0.17 34 25 0.83 ACGTcount: A:0.42, C:0.01, G:0.22, T:0.35 Consensus pattern (34 bp): AGATGATGATATGATGAATCTAGTGATATAAAAT Found at i:71501032 original size:490 final size:489 Alignment explanation
Indices: 71500113--71501095 Score: 1903 Period size: 490 Copynumber: 2.0 Consensus size: 489 71500103 GAATGATGAT * 71500113 ATGAGAGCTACTAAGTGTTTATTAATTGATGATTTGTATATCATGAATTGTTGAGTATATTTAGT 1 ATGAGAGCTACTAAGTGTTTAGTAATTGATGATTTGTATATCATGAATTGTTGAGTATATTTAGT * * * 71500178 ATGAACTTACTAAGCTAAGAAGCTTACTGTATGTTATTTATCTTTGTTTTCTAGAGTATCGAAGC 66 ATGAACCTACTAAGCGAAGAAGCTTACTGTATGTTATTTATCTTTGCTTTCTAGAGTATCGAAGC 71500243 TAGCTCAGACATCAAGGATCATCAGGAACCATCATCACACTATTGAATCAACTCGTTGGTACTTT 131 TAGCTCAGACATCAAGGATCATCAGGAACCATCATCACACTATTGAATCAACTCGTTGGTACTTT 71500308 TGAAGCTTTTGGAGCTTTGTATATATGGTATATGGCATGTATAAGCTAGTGTTATTTTGGTATGT 196 TGAAGCTTTTGGAGCTTTGTATATATGGTATATGGCATGTATAAGCTAGTGTTATTTTGGTATGT 71500373 TATGAGTCTTGATATTAGCCATGAGATTTGGCTTGTAAATGTGGTATGTATAGCCATCTAAGTTG 261 TATGAGTCTTGATATTAGCCATGAGATTTGGCTTGTAAATGTGGTATGTATAGCCATCTAAGTTG 71500438 GCTTGGATTATGTGTTTGGTAAGTGTTATATGTGATGTATATAATGCTTTATGAATTGGCTTGGT 326 GCTTGGATTATGTGTTTGGTAAGTGTTATATGTGATGTATATAATGCTTTATGAATTGGCTTGGT 71500503 TTGAGATGATGATATGATGAGTCTTGTGATATAAAATAGATGATATTATGATGAATTAGTGAATA 391 TTGAGATGATGATATGATGAGTCTTGTGATATAAAATAGATGATATTATGATGAATTAGTGAATA 71500568 TGAAATATATGTAAGTTGTGATGATTTTGGCATA 456 TGAAATATATGTAAGTTGTGATGATTTTGGCATA 71500602 ATGAGAGCTACTAAGTGTTTAGTAATTGATGATTTGTATATCATGAATTGTTGAGTATATTTAGT 1 ATGAGAGCTACTAAGTGTTTAGTAATTGATGATTTGTATATCATGAATTGTTGAGTATATTTAGT 71500667 ATGAACCTACTAAGCGAAGAAGCTTACTGTATGTTATTTATCTTTGCTTTCTAGAGTATCGAAGC 66 ATGAACCTACTAAGCGAAGAAGCTTACTGTATGTTATTTATCTTTGCTTTCTAGAGTATCGAAGC * 71500732 TAGCTCAGACATCAGGGATCATCAGGAACCATCATCACACTATTGAATCAACTCGTTGGTACTTT 131 TAGCTCAGACATCAAGGATCATCAGGAACCATCATCACACTATTGAATCAACTCGTTGGTAC-TT 71500797 TTGAAGCTTTTGGAGCTTTGTATATATGGTATATGGCATGTATAAGCTAGTGTTATTTTGGTATG 195 TTGAAGCTTTTGGAGCTTTGTATATATGGTATATGGCATGTATAAGCTAGTGTTATTTTGGTATG 71500862 TTATGAGTCTTGATATTAGCCATGAGATTTGGCTTGTAAATGTGGTATGTATAGCCATCTAAGTT 260 TTATGAGTCTTGATATTAGCCATGAGATTTGGCTTGTAAATGTGGTATGTATAGCCATCTAAGTT * 71500927 GGCTTGGATTATGTGTTTGGTAAGTGTTATATGTGATGTATATAATGCTTTATGAATTGGTTTGG 325 GGCTTGGATTATGTGTTTGGTAAGTGTTATATGTGATGTATATAATGCTTTATGAATTGGCTTGG 71500992 TTTGAGATGATGATATGATGAGTCTTGTGATATAAAATAGATGATATTATGATGAATTAGTGAAT 390 TTTGAGATGATGATATGATGAGTCTTGTGATATAAAATAGATGATATTATGATGAATTAGTGAAT 71501057 ATGAAATATATGTAAGTTGTGATGATTTTGGCATA 455 ATGAAATATATGTAAGTTGTGATGATTTTGGCATA 71501092 ATGA 1 ATGA 71501096 TTTGGTATAT Statistics Matches: 487, Mismatches: 6, Indels: 1 0.99 0.01 0.00 Matches are distributed among these distances: 489 187 0.38 490 300 0.62 ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40 Consensus pattern (489 bp): ATGAGAGCTACTAAGTGTTTAGTAATTGATGATTTGTATATCATGAATTGTTGAGTATATTTAGT ATGAACCTACTAAGCGAAGAAGCTTACTGTATGTTATTTATCTTTGCTTTCTAGAGTATCGAAGC TAGCTCAGACATCAAGGATCATCAGGAACCATCATCACACTATTGAATCAACTCGTTGGTACTTT TGAAGCTTTTGGAGCTTTGTATATATGGTATATGGCATGTATAAGCTAGTGTTATTTTGGTATGT TATGAGTCTTGATATTAGCCATGAGATTTGGCTTGTAAATGTGGTATGTATAGCCATCTAAGTTG GCTTGGATTATGTGTTTGGTAAGTGTTATATGTGATGTATATAATGCTTTATGAATTGGCTTGGT TTGAGATGATGATATGATGAGTCTTGTGATATAAAATAGATGATATTATGATGAATTAGTGAATA TGAAATATATGTAAGTTGTGATGATTTTGGCATA Found at i:71501064 original size:34 final size:34 Alignment explanation
Indices: 71500996--71501064 Score: 79 Period size: 34 Copynumber: 2.0 Consensus size: 34 71500986 GTTTGGTTTG * * 71500996 AGATGATGATATGATGAGTCTTGTGATATAAAAT 1 AGATGATGATATGATGAATCTAGTGATATAAAAT * 71501030 AGATGAT-ATTATGATGAAT-TAGTGAATATGAAAT 1 AGATGATGA-TATGATGAATCTAGTG-ATATAAAAT 71501064 A 1 A 71501065 TATGTAAGTT Statistics Matches: 30, Mismatches: 3, Indels: 4 0.81 0.08 0.11 Matches are distributed among these distances: 33 5 0.17 34 25 0.83 ACGTcount: A:0.42, C:0.01, G:0.22, T:0.35 Consensus pattern (34 bp): AGATGATGATATGATGAATCTAGTGATATAAAAT Found at i:71520383 original size:40 final size:40 Alignment explanation
Indices: 71520283--71520483 Score: 275 Period size: 40 Copynumber: 5.1 Consensus size: 40 71520273 CGGAATTTAG * ** * 71520283 CCGGATATAACCACAAGCACAATTGCCTT-GGGTCTTAAC 1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC * * 71520322 CCGG-TATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC 71520361 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC 1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC * 71520401 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAAC 1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC * * * 71520441 CCGGATATAATC-ACTAGCATAAATGCCTTCGGG-CTTAGC 1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC 71520480 CCGG 1 CCGG 71520484 GTATCATTCA Statistics Matches: 146, Mismatches: 13, Indels: 6 0.88 0.08 0.04 Matches are distributed among these distances: 38 19 0.13 39 26 0.18 40 100 0.68 41 1 0.01 ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23 Consensus pattern (40 bp): CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC Found at i:71528125 original size:40 final size:40 Alignment explanation
Indices: 71528081--71528257 Score: 266 Period size: 40 Copynumber: 4.4 Consensus size: 40 71528071 GTAAGCATTT * 71528081 TTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCC 1 TTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCC * * 71528121 TTCGGGTCTTATCCCGGATATAACAACTCGCACAAATGCC 1 TTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCC 71528161 TTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCC 1 TTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCC * * * 71528201 TTCGGGTCTTAACCCGGATATAATC-ACTAGCATAAATGCC 1 TTCGGGTCTTAACCCGGATAT-AGCAACTCGCACAAATGCC * * 71528241 TTCGGGGCTTAGCCCGG 1 TTCGGGTCTTAACCCGG 71528258 GTATCATTCA Statistics Matches: 126, Mismatches: 10, Indels: 2 0.91 0.07 0.01 Matches are distributed among these distances: 40 124 0.98 41 2 0.02 ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24 Consensus pattern (40 bp): TTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCC Found at i:71530592 original size:2 final size:2 Alignment explanation
Indices: 71530579--71530609 Score: 53 Period size: 2 Copynumber: 15.5 Consensus size: 2 71530569 ACATGCATGC * 71530579 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 71530610 AGCTTACAAC Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (2 bp): AT Found at i:71534972 original size:40 final size:39 Alignment explanation
Indices: 71534928--71535053 Score: 139 Period size: 40 Copynumber: 3.2 Consensus size: 39 71534918 GGGACTCAAC * 71534928 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT 1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT * * * * 71534968 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT 1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT * 71535008 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC 1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT 71535048 CCGGAT 1 CCGGAT 71535054 ATCATTCGAA Statistics Matches: 72, Mismatches: 11, Indels: 6 0.81 0.12 0.07 Matches are distributed among these distances: 40 64 0.89 41 8 0.11 ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29 Consensus pattern (39 bp): CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT Found at i:71535012 original size:80 final size:80 Alignment explanation
Indices: 71534867--71535053 Score: 204 Period size: 80 Copynumber: 2.3 Consensus size: 80 71534857 GCTACACATT * * * 71534867 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG 1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG * 71534931 GATTTAGT-AGCTT-GCT 64 GATTTAGTCA-CTTAGCA * * * ** 71534947 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC 1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC 71535010 GGATTTAGTCACTTAGCA 63 GGATTTAGTCACTTAGCA 71535028 CAAAGCCTTCGGGACTTAGCCCGGAT 1 CAAAGCCTTCGGGACTTAGCCCGGAT 71535054 ATCATTCGAA Statistics Matches: 90, Mismatches: 10, Indels: 14 0.79 0.09 0.12 Matches are distributed among these distances: 79 6 0.07 80 72 0.80 81 12 0.13 ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26 Consensus pattern (80 bp): CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA TTTAGTCACTTAGCA Found at i:71546165 original size:20 final size:20 Alignment explanation
Indices: 71546140--71546177 Score: 67 Period size: 20 Copynumber: 1.9 Consensus size: 20 71546130 AATCGCACAC * 71546140 TTAGTGTCAAATACCATTGA 1 TTAGTGCCAAATACCATTGA 71546160 TTAGTGCCAAATACCATT 1 TTAGTGCCAAATACCATT 71546178 AATTTATCAT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 17 1.00 ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34 Consensus pattern (20 bp): TTAGTGCCAAATACCATTGA Found at i:71547475 original size:28 final size:27 Alignment explanation
Indices: 71547435--71547501 Score: 82 Period size: 26 Copynumber: 2.5 Consensus size: 27 71547425 TTAAAAGAAA * * * 71547435 GCCTTTGTAGCAATATCTGTCAAATGAT 1 GCCTTTATGGCAA-ATCTATCAAATGAT 71547463 GCCTTTATGGC-AATCTATCAAATGAT 1 GCCTTTATGGCAAATCTATCAAATGAT * 71547489 GCCTTTACGGCAA 1 GCCTTTATGGCAA 71547502 GACTCTAAAA Statistics Matches: 34, Mismatches: 4, Indels: 3 0.83 0.10 0.07 Matches are distributed among these distances: 26 23 0.68 27 2 0.06 28 9 0.26 ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33 Consensus pattern (27 bp): GCCTTTATGGCAAATCTATCAAATGAT Found at i:71547485 original size:26 final size:26 Alignment explanation
Indices: 71547449--71547501 Score: 88 Period size: 26 Copynumber: 2.0 Consensus size: 26 71547439 TTGTAGCAAT * * 71547449 ATCTGTCAAATGATGCCTTTATGGCA 1 ATCTATCAAATGATGCCTTTACGGCA 71547475 ATCTATCAAATGATGCCTTTACGGCA 1 ATCTATCAAATGATGCCTTTACGGCA 71547501 A 1 A 71547502 GACTCTAAAA Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 26 25 1.00 ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32 Consensus pattern (26 bp): ATCTATCAAATGATGCCTTTACGGCA Found at i:71552549 original size:29 final size:29 Alignment explanation
Indices: 71552525--71552618 Score: 161 Period size: 29 Copynumber: 3.2 Consensus size: 29 71552515 TCGCACACCC * * 71552525 AGTGCCGTATTTTTCCAGCATGCACACTT 1 AGTGCCATATATTTCCAGCATGCACACTT 71552554 AGTGCCATATATTTCCAGCATGCACACTT 1 AGTGCCATATATTTCCAGCATGCACACTT * 71552583 AGTGCCATATATTTCCAGCACGCACACTT 1 AGTGCCATATATTTCCAGCATGCACACTT 71552612 AGTGCCA 1 AGTGCCA 71552619 ATCTCGTCAC Statistics Matches: 62, Mismatches: 3, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 29 62 1.00 ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30 Consensus pattern (29 bp): AGTGCCATATATTTCCAGCATGCACACTT Found at i:71552550 original size:58 final size:58 Alignment explanation
Indices: 71552487--71552618 Score: 158 Period size: 58 Copynumber: 2.3 Consensus size: 58 71552477 GATTTAAGCC * * * * * 71552487 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCA 1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA * * * ** 71552545 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA 1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA 71552603 CGCACACTTAGTGCCA 1 CGCACACTTAGTGCCA 71552619 ATCTCGTCAC Statistics Matches: 62, Mismatches: 11, Indels: 2 0.83 0.15 0.03 Matches are distributed among these distances: 58 61 0.98 59 1 0.02 ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26 Consensus pattern (58 bp): CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA Done.