Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 24 of 328
Found at i:7088903 original size:26 final size:24
Alignment explanation
Indices: 7088873--7088920 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
7088863 AATAAAAAAA
*
7088873 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
7088899 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
7088921 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:7088940 original size:21 final size:21
Alignment explanation
Indices: 7088891--7088949 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
7088881 ATAATAAATC
*
7088891 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
7088911 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
7088933 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
7088950 TTATTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:7088962 original size:12 final size:11
Alignment explanation
Indices: 7088910--7088963 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 11
7088900 TAAAAACATA
7088910 AAAACAAATATT
1 AAAAC-AATATT
*
7088922 AAAACAA-ATA
1 AAAACAATATT
* *
7088932 AAAATAATACT
1 AAAACAATATT
7088943 AAAACAATTATT
1 AAAACAA-TATT
7088955 AAAACAATA
1 AAAACAATA
7088964 CGCAAATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
10 8 0.24
11 11 0.32
12 15 0.44
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (11 bp):
AAAACAATATT
Found at i:7089249 original size:3 final size:3
Alignment explanation
Indices: 7089230--7089602 Score: 117
Period size: 3 Copynumber: 122.0 Consensus size: 3
7089220 AACGTAATAG
* * * *
7089230 TAT TTT TAT TAT T-T TAT TAT TAT TTT TACCT TTT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT TAT
* * * * * *
7089276 TAT TAACC TAC TAT TAT TAT TTT TAT TAA TA- TAG TAT TAT T-T TTT
1 TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
7089321 TAT ATAT TGT TAT TAT TAT TAG CAT GTA- TAT TAT TAT TAT TAAT GTGT
1 TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT T-AT -TAT
* * * *
7089369 TAT TGT TAT TTT CTAT T-T TAT TAT TACT T-T TAT TAC TAT TGT T-T
1 TAT TAT TAT TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* ** *
7089413 CTAT TAT TAT TAT T-T TCAT TACT TCCAT TAT TAT TAC CGT TAT TTT
1 -TAT TAT TAT TAT TAT T-AT TA-T T--AT TAT TAT TAT TAT TAT TAT
* * * * *
7089459 CTAT TAT CAT TAA TAT GTCGT T-T GT-T TAT TAT TAT TAT TAT TTT TAA
1 -TAT TAT TAT TAT TAT -T-AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
7089506 CAC TAT TAT CAT CAT TA- TAT T-T AAAT T-T TTT TAAA TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT T-AT TAT TAT TAT
* * *
7089550 CAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7089597 TAT TAT
1 TAT TAT
7089603 CCGTCCTATT
Statistics
Matches: 271, Mismatches: 65, Indels: 68
0.67 0.16 0.17
Matches are distributed among these distances:
2 24 0.09
3 215 0.79
4 24 0.09
5 7 0.03
6 1 0.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:7089255 original size:20 final size:20
Alignment explanation
Indices: 7089230--7089403 Score: 77
Period size: 20 Copynumber: 8.6 Consensus size: 20
7089220 AACGTAATAG
7089230 TATTTTTATTATTTTATTAT
1 TATTTTTATTATTTTATTAT
* *
7089250 TATTTTTACCT-TTTTATTAC
1 TATTTTTA-TTATTTTATTAT
* **
7089270 TATTATTATTAACCTACTATTAT
1 TATTTTTATT-A--TTTTATTAT
* * *
7089293 TATTTTTATTAATATAGTAT
1 TATTTTTATTATTTTATTAT
*
7089313 TATTTTT-TTATATATTGTTAT
1 TATTTTTATTAT-T-TTATTAT
* ** *
7089334 TATTATTAGCATGTATATTAT
1 TATTTTTATTAT-TTTATTAT
* * * * *
7089355 TATTATTAATGTGTTATTGT
1 TATTTTTATTATTTTATTAT
*
7089375 TA-TTTT-CTATTTTATTAT
1 TATTTTTATTATTTTATTAT
*
7089393 TACTTTTATTA
1 TATTTTTATTA
7089404 CTATTGTTTC
Statistics
Matches: 110, Mismatches: 34, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
18 10 0.09
19 11 0.10
20 45 0.41
21 25 0.23
22 4 0.04
23 15 0.14
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (20 bp):
TATTTTTATTATTTTATTAT
Found at i:7089313 original size:23 final size:23
Alignment explanation
Indices: 7089264--7089340 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
7089254 TTTACCTTTT
* * ** *
7089264 TATTACTATTATTATTAACCTAC
1 TATTATTATTTTTATTAATATAG
7089287 TATTATTATTTTTATTAATATAG
1 TATTATTATTTTTATTAATATAG
*
7089310 TATTATT-TTTTTA-T-ATATTG
1 TATTATTATTTTTATTAATATAG
7089330 TTATTATTATT
1 -TATTATTATT
7089341 AGCATGTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
20 5 0.11
21 8 0.17
22 8 0.17
23 25 0.54
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (23 bp):
TATTATTATTTTTATTAATATAG
Found at i:7089333 original size:18 final size:20
Alignment explanation
Indices: 7089230--7089364 Score: 82
Period size: 20 Copynumber: 6.7 Consensus size: 20
7089220 AACGTAATAG
* *
7089230 TATTTTTATTATTTTATTAT
1 TATTTTTATTAATATATTAT
* *
7089250 TATTTTTACCTT--TTTATTAC
1 TATTTTTA--TTAATATATTAT
*
7089270 TATTATTATTAACCTACTATTAT
1 TATTTTTATTAA--TA-TATTAT
*
7089293 TATTTTTATTAATATAGTAT
1 TATTTTTATTAATATATTAT
*
7089313 TATTTTT-TT-ATATATTGT
1 TATTTTTATTAATATATTAT
* *
7089331 TATTATTATTAGCATGTA-TAT
1 TATTTTTATTA--ATATATTAT
*
7089352 TATTATTATTAAT
1 TATTTTTATTAAT
7089365 GTGTTATTGT
Statistics
Matches: 93, Mismatches: 11, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
18 15 0.16
19 6 0.06
20 34 0.37
21 15 0.16
22 7 0.08
23 16 0.17
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (20 bp):
TATTTTTATTAATATATTAT
Found at i:7092133 original size:158 final size:158
Alignment explanation
Indices: 7091962--7092390 Score: 786
Period size: 158 Copynumber: 2.7 Consensus size: 158
7091952 AACATGAACC
7091962 AATTACATAAGGATAAAAATCATAAGAGAATTTACTAATTACAACTTGAGCCAATAATACAAAAT
1 AATT-CATAAGGATAAAAATCATAAGAGAATTTACTAATTACAACTTGAGCCAATAATACAAAAT
7092027 TAATTAACTAAGTTTTAAAAAAATTTCTTATAAATTAGTAAACCCCTAACTGCTGTAGGGTTTTT
65 TAATTAACTAAGTTTTAAAAAAATTTCTTATAAATTAGTAAACCCCTAACTGCTGTAGGGTTTTT
*
7092092 CTTCTTCAATCGTTGAAGAAAAATTAGCT
130 CTTCTTCAATCATTGAAGAAAAATTAGCT
7092121 AATTCATAAGGATAAAAATCATAAGAGAATTTACTAATTACAACTTGAGCCAATAATACAAAATT
1 AATTCATAAGGATAAAAATCATAAGAGAATTTACTAATTACAACTTGAGCCAATAATACAAAATT
*
7092186 AATTAACTAAGTTTTAAAAAAATTTCTTATAAATTAGTAAACCCCTAACTGCTGTAGGTTTTTTC
66 AATTAACTAAGTTTTAAAAAAATTTCTTATAAATTAGTAAACCCCTAACTGCTGTAGGGTTTTTC
7092251 TTCTTCAATCATTGAAGAAAAATTAGCT
131 TTCTTCAATCATTGAAGAAAAATTAGCT
* * *
7092279 AATTCATAAGGATAAAAATCATACGAGAATTTACTAATTACAACTTGAACCAGTAATACAAAATT
1 AATTCATAAGGATAAAAATCATAAGAGAATTTACTAATTACAACTTGAGCCAATAATACAAAATT
* *
7092344 AATTAACTAAGTTTTAAAAAAAATTCTTACAAATTAGTAAACCCCTA
66 AATTAACTAAGTTTTAAAAAAATTTCTTATAAATTAGTAAACCCCTA
7092391 GGAAACAGTA
Statistics
Matches: 263, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
158 259 0.98
159 4 0.02
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.33
Consensus pattern (158 bp):
AATTCATAAGGATAAAAATCATAAGAGAATTTACTAATTACAACTTGAGCCAATAATACAAAATT
AATTAACTAAGTTTTAAAAAAATTTCTTATAAATTAGTAAACCCCTAACTGCTGTAGGGTTTTTC
TTCTTCAATCATTGAAGAAAAATTAGCT
Found at i:7093451 original size:9 final size:9
Alignment explanation
Indices: 7093439--7093471 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
7093429 TAGAGTTGAT
*
7093439 TCGATTAAT
1 TCGATTAAC
7093448 TCGATTAAC
1 TCGATTAAC
7093457 TCGATTAAC
1 TCGATTAAC
7093466 TCGATT
1 TCGATT
7093472 CGAATAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (9 bp):
TCGATTAAC
Found at i:7095703 original size:5 final size:5
Alignment explanation
Indices: 7095680--7095728 Score: 64
Period size: 5 Copynumber: 9.6 Consensus size: 5
7095670 ACAGGCAAGT
*
7095680 AAATA AGAA-A AATATA AAATA AAATA AAATA AAATA AAATA AAACA AAA
1 AAATA A-AATA AA-ATA AAATA AAATA AAATA AAATA AAATA AAATA AAA
7095729 GGGGAATAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
4 1 0.03
5 34 0.85
6 5 0.12
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (5 bp):
AAATA
Found at i:7096859 original size:23 final size:21
Alignment explanation
Indices: 7096815--7096879 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
7096805 GAAAAATATA
*
7096815 CATTTTGTTCTTTTTTGCTGT
1 CATTTTGTTATTTTTTGCTGT
*
7096836 CATTTCTGTTATTTTTTTCTTGT
1 CATTT-TGTTATTTTTTGC-TGT
* * *
7096859 CCTTTTTGTTGTTGTTTGCTG
1 -CATTTTGTTATTTTTTGCTG
7096880 CTGTCTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 5 0.14
22 13 0.37
23 13 0.37
24 4 0.11
ACGTcount: A:0.05, C:0.14, G:0.15, T:0.66
Consensus pattern (21 bp):
CATTTTGTTATTTTTTGCTGT
Found at i:7099341 original size:52 final size:52
Alignment explanation
Indices: 7099192--7099344 Score: 161
Period size: 52 Copynumber: 2.9 Consensus size: 52
7099182 CATATCATAT
* *
7099192 CGATGCCATATCCCAGA-TATGGTCTTATACGGAATCACATTATCACAACACAC
1 CGATGCCATAGCCC-GACTATGGTCTTATACGGAATCACA-TATCACATCACAC
* * ***
7099245 CGAAGCCATAG--CGTAGCTATGGTCTTATACGGAAACACGA-ATCACATTGTAC
1 CGATGCCATAGCCCG-A-CTATGGTCTTATACGGAATCAC-ATATCACATCACAC
*
7099297 CGATGCCATAGCCCGACTATGGTCTTATACGGAATCATATATCACATC
1 CGATGCCATAGCCCGACTATGGTCTTATACGGAATCACATATCACATC
7099345 TTTTTCGTCA
Statistics
Matches: 82, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
50 1 0.01
51 3 0.04
52 45 0.55
53 30 0.37
54 3 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (52 bp):
CGATGCCATAGCCCGACTATGGTCTTATACGGAATCACATATCACATCACAC
Found at i:7104439 original size:13 final size:13
Alignment explanation
Indices: 7104421--7104445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7104411 AAATCGAGTC
7104421 ATAAATAATTATT
1 ATAAATAATTATT
7104434 ATAAATAATTAT
1 ATAAATAATTAT
7104446 GAGTTTAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAAATAATTATT
Found at i:7104862 original size:36 final size:35
Alignment explanation
Indices: 7104822--7104914 Score: 107
Period size: 36 Copynumber: 2.5 Consensus size: 35
7104812 TATATGTGTG
*
7104822 GAATTGAATTGAATAT-TGACTTGAAAATGGAAAAGT
1 GAATTGAATTGAAT-TGTGA-TTGAAAATGAAAAAGT
*
7104858 GAATTTTGAATTGAATTGTGATTGAAAGTGAAAAAGT
1 GAA--TTGAATTGAATTGTGATTGAAAATGAAAAAGT
*
7104895 GCAATTGAATTGAAATGTGA
1 G-AATTGAATTGAATTGTGA
7104915 ATTTGGAGAC
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
36 18 0.36
37 16 0.32
38 16 0.32
ACGTcount: A:0.42, C:0.02, G:0.24, T:0.32
Consensus pattern (35 bp):
GAATTGAATTGAATTGTGATTGAAAATGAAAAAGT
Found at i:7105099 original size:37 final size:38
Alignment explanation
Indices: 7105002--7105100 Score: 110
Period size: 38 Copynumber: 2.6 Consensus size: 38
7104992 CTTCAACCTC
*
7105002 GAGTCGATGAGACACTGGGTGTCACTATTTTACTTCGGATA
1 GAGTCGATGAGACACT-GG-GT-ACCATTTTACTTCGGATA
* ** * *
7105043 GATTCGATGAGGTATTGGGTACCATTTTACTTCGGCTA
1 GAGTCGATGAGACACTGGGTACCATTTTACTTCGGATA
7105081 G-GTCGATGAGACACTGGGTA
1 GAGTCGATGAGACACTGGGTA
7105101 TCACTTTATT
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
37 15 0.31
38 17 0.35
39 2 0.04
40 2 0.04
41 12 0.25
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (38 bp):
GAGTCGATGAGACACTGGGTACCATTTTACTTCGGATA
Found at i:7107041 original size:23 final size:23
Alignment explanation
Indices: 7107014--7107060 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7107004 AAAATACATG
7107014 TGTAAAAA-TATTATACATATACT
1 TGTAAAAATTA-TATACATATACT
* *
7107037 TGTAATAATTATATACATTTACT
1 TGTAAAAATTATATACATATACT
7107060 T
1 T
7107061 ATTATTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.45
Consensus pattern (23 bp):
TGTAAAAATTATATACATATACT
Found at i:7107957 original size:30 final size:28
Alignment explanation
Indices: 7107903--7107963 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
7107893 TAAAAATGTA
7107903 AAATATATATTTAAATTTGTAAATTTGT
1 AAATATATATTTAAATTTGTAAATTTGT
*
7107931 AAATATATATTATGGAATTATG-AAATTTGT
1 AAATATATATT-T-AAATT-TGTAAATTTGT
7107961 AAA
1 AAA
7107964 GAAAATTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 11 0.38
29 1 0.03
30 15 0.52
31 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (28 bp):
AAATATATATTTAAATTTGTAAATTTGT
Found at i:7108063 original size:20 final size:20
Alignment explanation
Indices: 7108035--7108085 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
7108025 GACAAAAAGT
*
7108035 ATATATGTGAAAAACGTGTG
1 ATATTTGTGAAAAACGTGTG
7108055 ATATTTGTGAAAAACGTGTG
1 ATATTTGTGAAAAACGTGTG
7108075 ATATTTGTGAA
1 ATATTTGTGAA
7108086 TTGTGAAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (20 bp):
ATATTTGTGAAAAACGTGTG
Found at i:7111723 original size:2 final size:2
Alignment explanation
Indices: 7111716--7111746 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7111706 CCAAATATTC
7111716 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7111747 AACATTAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7120225 original size:265 final size:261
Alignment explanation
Indices: 7119680--7121719 Score: 1580
Period size: 265 Copynumber: 7.7 Consensus size: 261
7119670 AGGCAAACAC
* * * * *
7119680 GAGCACCTAGTCTATCAAGTTAATTCTTCCATCGCTCAAACCAGTCAATCTC-ACTGATGTTATC
1 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCAAC-AATGTTATC
* * *
7119744 C-ATAT-GGCTACTAGTTACATATGCAGAGTCAACACAGTATTTCAC----A---AGCAAAGAAA
65 CTACATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAA
* * *
7119800 CAGAGGAAACACAATTAATAGTTTACTAAACTCACCAAGA-GATTTAACTCCCCTCCATTGACAC
130 CAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCATTGACAC
* * * * *
7119864 ACGACGCTAACCAATAACTAAAACCCCTTAAAAGGCTCCATTGACACCGTTAAACAAGAAGTCAA
194 ACAACGCTAACCGAT-ATTAAAACCCCTTAAAAAGCTCCATTGACACCGTTCAACAAGAAGTCAA
*
7119929 ATTC
258 ATTT
* * * *
7119933 AAGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTATCC
1 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTATCC
* *
7119998 TACATGGGCTACAACTTAAATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAAC
66 TACATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAAC
* * *
7120063 AAAGGAAACACGATTACTAGTTCACAGAACTCACCAAGAGGATTGAACTCTCCTCCAATTGACAC
131 AGAGGAAACACAATTACTAGTTCACA-AACTCACCAAGAGGATTGAACTCCCCTCC-ATTGACAC
* * * * * * *
7120128 ACAATGCTAACTGATATCAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTTCAACAATAAGTCA
194 ACAACGCTAACCGATAT-TAAAA-CCCCTTAAAAAGCTCCATTGACACCGTTCAACAAGAAGTCA
7120193 AATTT
257 AATTT
* * * * *
7120198 GAGCATCC-AGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCAATCTCATCAAAG-CATC
1 GAGCA-CCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTATC
* ** * * * * **
7120261 CTATATAAGC-AGCTAC-GACCAAATGCAAAGTCAACAGAAAGTATTTCCCAT-TCAGTTAGGGA
65 CTACATGGGCTA-CTACTTA-CATATGCAGAGTCAAC--AAAGTATTTCACATAT-AGTTAGCAA
* *
7120323 AGAAACAGAGGAAACACAATTAGC-AGTTCACTAAACTCACCGAGAAGATTGAACTCCCCTCCAT
125 AGAAACAGAGGAAACACAATTA-CTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCAT
* * * * * *
7120387 TAACACACAACGCAAAGCC-ATAATAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACATGA
188 TGACACACAACGCTAA-CCGATATTAAAACCCCTTAAAAAGCTCCATTGACACCGTTCAACAAGA
7120451 AGTCAAATTT
252 AGTCAAATTT
* * * ** * *
7120461 GAGCACTTAGTCTA-TAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTCACCAATGTCAT
1 GAGCACCTAGTCTATTAA-GT-TAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTAT
*
7120525 CCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAG
64 CCTACATGGGCTACTACTTACATATGCAGAGTC-A-ACAAAGTATTTCACATATAGTTAGCAAAG
*
7120590 AAAC--A--AAAGA-AA--ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCAATTG
127 AAACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCC-ATTG
* * * * * *
7120648 ACACACAGCGCTAACAGATAGTTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAACAAGAAG
190 ACACACAACGCTAACCGATA-TTAAAACCCCTTAAAAAGCTCCATTGACACCGTTCAACAAGAAG
*
7120712 TCAAATCT
254 TCAAATTT
* * **
7120720 GAGCACCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAA-CATATCC
1 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTATCC
* * *** * * * * * * **
7120784 CAGACAAGCTACTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCATTTAGTTAGTGAAGAA
66 TACATGGGCTACTACTTACATATGCAGAGTCAAC--AAAGTATTTCACATATAGTTAGCAAAGAA
* * *
7120849 ACAGGGGAAACACAATTAAC-AGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCATTG--
129 ACAGAGGAAACACAATT-ACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCATTGAC
* * *
7120911 ACACAACACTAATCC-ATAATTAAAACCCCTTAAAAATCTCCATTGACA-CTTCTCAACAAGAAG
192 ACACAACGCTAA-CCGAT-ATTAAAACCCCTTAAAAAGCTCCATTGACACCGT-TCAACAAGAAG
*
7120974 TCAAATTG
254 TCAAATTT
* * * * * * *
7120982 GAGCACATAGTCTACTAGGTTAATTCTTCCATTGGTCAAACTAGTCAATCACACCAAAATGCCAA
1 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCA--ACAATG----
* * * **
7121047 ATTATCCTACAT-GG--ACTACTTACACATGCAGAGTCAACACAGTATTTCACACATAACTAGCA
60 -TTATCCTACATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCA
* *
7121109 GAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGAACTCCCCTCCAT
124 AAGAAACAGAGGAAACACAATTACTAGTTCA-CAAACTCACCAAGAGGATTGAACTCCCCTCCAT
* * * * * * *
7121174 TGACACAAAATGCTAACCGATAATTAAAACCCCTT-AAAAGGTGCCATGGACACCATTCAAGAAT
188 TGACACACAACGCTAACCGAT-ATTAAAACCCCTTAAAAAGCT-CCATTGACACCGTTCAACAAG
*
7121238 AAGTCAAATTC
251 AAGTCAAATTT
* * * * * *
7121249 AAGCACCTAGTGGTCCTAGTCT-A-CTAAGTTTTTCCTTTGCTCAAACTGGTCAATCACACCAAT
1 GAGCACCTA---GT-CTA-T-TAAGTTAA-TTCTTCCTTTGCTCAAACTAGTCAATCTCAACAAT
* * * * * *** *
7121312 GGGTTAATCCTATATGGGTTACTACTTACATATACAGAGCCAACACCAAGTGTTTCACACGCAGC
59 --GTT-ATCCTACATGGGCTACTACTTACATATGCAGAGTCAACA--AAGTATTTCACATATAGT
** * * * * * *
7121377 TAGTGAAGAAACAGAGAAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAACTCCCC
119 TAGCAAAGAAACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCC
* ** ** * * * * *
7121442 TCCATTGACACATAGTGCTAACAAATAATTAAAACCTCTT-ATAGGCGCCATTGACACCATTCAA
183 TCCATTGACACACAACGCTAACCGAT-ATTAAAACCCCTTAAAAAGCTCCATTGACACCGTTCAA
*
7121506 GAAGAAGTC-AATTT
247 CAAGAAGTCAAATTT
* * ** * * * **
7121520 CAAGCACCAGCTGGTCCTAGTCT-A-TTAAGGTT-TTGATTTGCTCAAACAAGTCGATCACGCCA
1 -GAGCA-C--CTAGT-CTA-T-TAAGTTAA--TTCTTCCTTTGCTCAAACTAGTCAATCTCAACA
* * * * * *
7121582 ATGGGTTAATCTTAAATGAAG-TATTACTTACACATGCAGAGTCCATACAAAATATTTCACATAT
57 AT--GTT-ATCCTACATG-GGCTACTACTTACATATGCAGAGT-CA-ACAAAGTATTTCACATAT
* * *
7121646 AGCTAGCTAAA-AAACAGAGGAAACACAATCAATAGTTCACTATAACTCACCAAGAGGATTGAAC
116 AGTTAGC-AAAGAAACAGAGGAAACACAATTACTAGTTCAC-A-AACTCACCAAGAGGATTGAAC
*
7121710 TCTCCTCCAT
178 TCCCCTCCAT
7121720 AGCCATCAAG
Statistics
Matches: 1442, Mismatches: 252, Indels: 166
0.78 0.14 0.09
Matches are distributed among these distances:
253 54 0.04
254 5 0.00
255 38 0.03
256 1 0.00
257 53 0.04
258 68 0.05
259 73 0.05
260 10 0.01
261 27 0.02
262 134 0.09
263 74 0.05
264 124 0.09
265 234 0.16
266 88 0.06
267 82 0.06
268 10 0.01
269 3 0.00
270 12 0.01
271 32 0.02
272 171 0.12
273 144 0.10
274 3 0.00
275 2 0.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (261 bp):
GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTATCC
TACATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAAC
AGAGGAAACACAATTACTAGTTCACAAACTCACCAAGAGGATTGAACTCCCCTCCATTGACACAC
AACGCTAACCGATATTAAAACCCCTTAAAAAGCTCCATTGACACCGTTCAACAAGAAGTCAAATT
T
Found at i:7120831 original size:522 final size:522
Alignment explanation
Indices: 7119794--7121212 Score: 1740
Period size: 522 Copynumber: 2.7 Consensus size: 522
7119784 TTCACAAGCA
* * *
7119794 AAGAAACAGAGGAAACACAATTAATAGTTTACTAAACTCACCAAG-AGATTTAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * * *
7119858 TGACACACGACGCTAACCAATAACTAAAACCCCTTAAAAGGCTCCATTGACACCGTTAAACAAGA
66 T-ACACACAACGCTAACC-ATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGA
* * * * * *
7119923 AGTCAAATTCAAGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCAAC
129 AGTCAAATTCGAGCACATAGTCTATAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACC
*
7119988 AATGTTATCCTACATGGGCTACAACTTAAATATGCAGAGTC-A-ACAAAGTATTTCACATATAGT
194 AATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGT
* *
7120051 TAGCAAAGAAACAAAGGAAACACGATTACTAGTTCACAGAACTCACCAAGAGGATTGAACTCTCC
259 TAGCAAAGAAACAAA--AAACA--A-TACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCC
* * ** * *
7120116 TCCAATTGACACACAATGCTAACTGATATCAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTTC
319 TCCAATTGACACACAATGCTAACAGATAT-TAAAA-CCCCTTAAAAACCTCCATTGACACTGCTC
* * * * *
7120181 AACAATAAGTCAAATTTGAGCATCCAGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCAA
382 AACAAGAAGTCAAATCTGAGCATCCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAA
* * * *
7120246 TCTCATCAAAGCATCCTATATAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGTATTTCCCA
447 TCTCATCAAAGCATCCCAGACAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCA
7120311 TTCAGTTAGGG
512 TTCAGTTAGGG
* *
7120322 AAGAAACAGAGGAAACACAATTAGCAGTTCACTAAACTCACCGAGAAGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * *
7120387 TAACACACAACGCAAAGCCATAA-TAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACATGA
66 T-ACACACAACGCTAA-CCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGA
* * * **
7120451 AGTCAAATTTGAGCACTTAGTCTATAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTCAC
129 AGTCAAATTCGAGCACATAGTCTATAAGGTC-AATTCTTCCATTGCTCAAACTAGTCAATCTCAC
*
7120516 CAATGTCATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
193 CAATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
*
7120581 TTAGCAAAGAAACAAAAGA-AA-ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCA
258 TTAGCAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCA
** *
7120644 ATTGACACACAGCGCTAACAGATAGTTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAACAA
323 ATTGACACACAATGCTAACAGATA-TTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAACAA
7120708 GAAGTCAAATCTGAGCA-CCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTC
387 GAAGTCAAATCTGAGCATCC-AGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTC
* ** ** *
7120772 ATCAACA-TATCCCAGACAAGCTA-CTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCATT
451 ATCAA-AGCATCCCAGACAAGC-AGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCATT
* *
7120835 TAGTTAGTG
514 CAGTTAGGG
* * *
7120844 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * * * **
7120909 T-GACACAACACTAATCCATAATTAAAACCCCTTAAAAATCTCCATTGACACTTCTCAACAAGAA
66 TACACACAACGCTAA-CCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGAA
* * * *
7120973 GTCAAATTGGAGCACATAGTCTACT-AGGTTAATTCTTCCATTGGTCAAACTAGTCAATCACACC
130 GTCAAATTCGAGCACATAGTCTA-TAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACC
* *
7121037 AAAATGCCAAATTATCCTACAT-GG--ACTACTTACACATGCAGAGTCAACAC--AGTATTTCAC
194 --AATG-----TTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCAC
* ** * * *
7121097 ACATAACTAGCAGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGA
252 ATATAGTTAGCAAAGAAACA-A--AAA-ACAA-TACTAGTTCACAAAACTCACCAAGAGGATTGA
* *
7121162 ACTCCCCTCC-ATTGACACAAAATGCTAACCGATAATTAAAACCCCTTAAAA
312 ACTCCCCTCCAATTGACACACAATGCTAACAGAT-ATTAAAACCCCTTAAAA
7121213 GGTGCCATGG
Statistics
Matches: 775, Mismatches: 89, Indels: 53
0.85 0.10 0.06
Matches are distributed among these distances:
520 45 0.06
521 64 0.08
522 232 0.30
523 3 0.00
524 89 0.11
525 3 0.00
526 4 0.01
527 12 0.02
528 129 0.17
529 155 0.20
530 3 0.00
531 36 0.05
ACGTcount: A:0.39, C:0.25, G:0.13, T:0.24
Consensus pattern (522 bp):
AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
TACACACAACGCTAACCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGAAG
TCAAATTCGAGCACATAGTCTATAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACCAA
TGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTA
GCAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCAATT
GACACACAATGCTAACAGATATTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAACAAGAAG
TCAAATCTGAGCATCCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAA
AGCATCCCAGACAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCATTCAGTTAG
GG
Found at i:7121472 original size:273 final size:272
Alignment explanation
Indices: 7120844--7121719 Score: 821
Period size: 272 Copynumber: 3.2 Consensus size: 272
7120834 TTAGTTAGTG
* * * *
7120844 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
* * ** * * * *
7120909 TGACACAACA--CTAATC-CATAATTAAAACCCCTTAAAAATCTCCATTGACA-CTTCTCAACAA
66 TGACACAAAATGCTAA-CAAATAATTAAAACCCCTT-AAAGGCGCCATGGACACCAT-TCAAGAA
** * * * *
7120970 GAAGTCAAATTGGAGCA-CA--TAGT-CTA--CTAGGTTAA--TTCTTCCA-TTGGTCAAACTAG
128 GAAGTCAAATTCAAGCACCAGCTGGTCCTAGTCTA--CTAAGGTT-TT-CATTTGCTCAAACAAG
** * *
7121026 TCAATCACACCAAAATGCCAAATT-ATCCTACATG--G-ACTACTTACACATGCAGAGT-CA-AC
189 TCAATCACACC--AATG---GGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATAC
* * * *
7121085 ACAGTATTTCACACATAACTAGC-
249 AAAATATTTCACACACAGCTAGCT
*
7121108 AGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGAACTCCCCTCCA
1 A-AGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
** * *
7121173 TTGACACAAAATGCTAACCGATAATTAAAACCCCTTAAAAGGTGCCATGGACACCATTCAAGAAT
65 TTGACACAAAATGCTAACAAATAATTAAAACCCCTT-AAAGGCGCCATGGACACCATTCAAGAAG
* * **
7121238 AAGTCAAATTCAAGCACCTAG-TGGTCCTAGTCTACTAAGTTTTTCCTTTGCTCAAACTGGTCAA
129 AAGTCAAATTCAAGCACC-AGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAA
* * * * *
7121302 TCACACCAATGGGTTAATCCTATATG-GGTTACTACTTACATATACAGAG-CCA-ACACCAAGTG
193 TCACACCAATGGGTTAATCCTAAATGAAG-TACTACTTACACATACAGAGTCCATACA--AAATA
*
7121364 TTTCACACGCAGCTAG-T
255 TTTCACACACAGCTAGCT
* * * * *
7121381 GAAGAAACAGAGAAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAACTCCCCTCCA
1 -AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
* * * * *
7121446 TTGACACATAGTGCTAACAAATAATTAAAACCTCTTATAGGCGCCATTGACACCATTCAAGAAGA
65 TTGACACAAAATGCTAACAAATAATTAAAACCCCTTAAAGGCGCCATGGACACCATTCAAGAAGA
* * * *
7121511 AGTCAATTTCAAGCACCAGCTGGTCCTAGTCTATTAAGGTTTTGATTTGCTCAAACAAGTCGATC
130 AGTCAAATTCAAGCACCAGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAATC
* * * *
7121576 ACGCCAATGGGTTAATCTTAAATGAAGTATTACTTACACATGCAGAGTCCATACAAAATATTTCA
195 ACACCAATGGGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATACAAAATATTTCA
* *
7121641 CATATAGCTAGCT
260 CACACAGCTAGCT
* * *
7121654 AAAAAACAGAGGAAACACAATCAATAGTTCACTATAACTCACCAAGAGGATTGAACTCTCCTCCA
1 AAGAAACAGAGGAAACACAATTAATAGTTCACTA-AACTCACCAAGAGGATTGAACTCCCCTCCA
7121719 T
65 T
7121720 AGCCATCAAG
Statistics
Matches: 508, Mismatches: 75, Indels: 49
0.80 0.12 0.08
Matches are distributed among these distances:
264 1 0.00
265 68 0.13
266 1 0.00
267 54 0.11
268 12 0.02
269 2 0.00
270 7 0.01
271 31 0.06
272 186 0.37
273 142 0.28
274 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (272 bp):
AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
TGACACAAAATGCTAACAAATAATTAAAACCCCTTAAAGGCGCCATGGACACCATTCAAGAAGAA
GTCAAATTCAAGCACCAGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAATCA
CACCAATGGGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATACAAAATATTTCAC
ACACAGCTAGCT
Found at i:7123310 original size:18 final size:17
Alignment explanation
Indices: 7123273--7123315 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
7123263 TAAAAATCAA
*
7123273 AAATATAAAAAAATATT
1 AAATATAAAAAAATACT
*
7123290 AAATATTAAAAAAATGCT
1 AAATA-TAAAAAAATACT
7123308 AAA-ATAAA
1 AAATATAAA
7123316 TATAAACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 4 0.17
17 6 0.26
18 13 0.57
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (17 bp):
AAATATAAAAAAATACT
Found at i:7123646 original size:22 final size:22
Alignment explanation
Indices: 7123615--7123657 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7123605 TATGCTTAAA
* *
7123615 ATATTTAAAATTTTATAAAAAC
1 ATATTAAAAATTCTATAAAAAC
7123637 ATATTAAAAATTCTATAAAAA
1 ATATTAAAAATTCTATAAAAA
7123658 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATTAAAAATTCTATAAAAAC
Found at i:7123709 original size:28 final size:26
Alignment explanation
Indices: 7123627--7123710 Score: 62
Period size: 28 Copynumber: 3.0 Consensus size: 26
7123617 ATTTAAAATT
*
7123627 TTATAAAAACATATTAAAAATTCTATAAA
1 TTAT-AAAA-ATATTAAAAAATC-ATAAA
** *
7123656 AAATAAAAATATTTAAAATGAT-ATAAA
1 TTATAAAAATA-TTAAAA-AATCATAAA
7123683 CTTATAAAAATTATTAAAAAATCATAAA
1 -TTATAAAAA-TATTAAAAAATCATAAA
7123711 AACTTGAACT
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
27 10 0.23
28 28 0.65
29 5 0.12
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (26 bp):
TTATAAAAATATTAAAAAATCATAAA
Found at i:7124123 original size:17 final size:18
Alignment explanation
Indices: 7124096--7124263 Score: 57
Period size: 19 Copynumber: 9.3 Consensus size: 18
7124086 TTATGATTTT
7124096 TTTTATAATTTTATATAA
1 TTTTATAATTTTATATAA
*
7124114 TTTT-TAATTTTTTATAAAA
1 TTTTATAA--TTTTATATAA
* * *
7124133 ATTTAAATATTTTAAATAAA
1 TTTTATA-ATTTTATAT-AA
**
7124153 TTTTAT--TTTT-TATTT
1 TTTTATAATTTTATATAA
*
7124168 TTTTGTAA-TTTATAATAA
1 TTTTATAATTTTAT-ATAA
* * *
7124186 -TTTATTTATTTTTTGT-A
1 TTTTA-TAATTTTATATAA
*
7124203 TTTTATAATATTTATA-AG
1 TTTTATAAT-TTTATATAA
* * *
7124221 TGTTTATATTTTTCT-TAT
1 T-TTTATAATTTTATATAA
*
7124239 TTTTATAATTTTTTAATAA
1 TTTTATAATTTTAT-ATAA
7124258 TTTTAT
1 TTTTAT
7124264 GATAAAATAT
Statistics
Matches: 105, Mismatches: 27, Indels: 35
0.63 0.16 0.21
Matches are distributed among these distances:
15 5 0.05
16 5 0.05
17 26 0.25
18 24 0.23
19 37 0.35
20 7 0.07
21 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTATAATTTTATATAA
Found at i:7124125 original size:8 final size:9
Alignment explanation
Indices: 7124095--7124261 Score: 64
Period size: 10 Copynumber: 18.4 Consensus size: 9
7124085 TTTATGATTT
7124095 TTTTTATAA
1 TTTTTATAA
7124104 TTTTATATAA
1 TTTT-TATAA
*
7124114 TTTTTA-AT
1 TTTTTATAA
7124122 TTTTTATAAA
1 TTTTTAT-AA
**
7124132 AATTTA-AA
1 TTTTTATAA
7124140 TATTTTAAATAA
1 T-TTTT--ATAA
*
7124152 ATTTTAT--
1 TTTTTATAA
*
7124159 TTTTTAT-T
1 TTTTTATAA
*
7124167 TTTTTGTAA
1 TTTTTATAA
*
7124176 TTTATAATAA
1 TTT-TTATAA
*
7124186 TTTATT-TAT
1 TTT-TTATAA
*
7124195 TTTTTGT-A
1 TTTTTATAA
7124203 -TTTTATAA
1 TTTTTATAA
*
7124211 TATTTATAA
1 TTTTTATAA
*
7124220 GTGTTTAT-A
1 -TTTTTATAA
* *
7124229 TTTTTCTTA
1 TTTTTATAA
7124238 TTTTTATAA
1 TTTTTATAA
7124247 TTTTTTAATAA
1 -TTTTT-ATAA
7124258 TTTT
1 TTTT
7124262 ATGATAAAAT
Statistics
Matches: 119, Mismatches: 22, Indels: 33
0.68 0.13 0.19
Matches are distributed among these distances:
7 11 0.09
8 23 0.19
9 36 0.30
10 38 0.32
11 9 0.08
12 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7124126 original size:19 final size:19
Alignment explanation
Indices: 7124104--7124165 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
7124094 TTTTTTATAA
*
7124104 TTTTATATAATTTTTAATT
1 TTTTATATAAATTTTAATT
* * *
7124123 TTTTATAAAAATTTAAATA
1 TTTTATATAAATTTTAATT
*
7124142 TTTTAAATAAATTTT-ATT
1 TTTTATATAAATTTTAATT
7124160 TTTTAT
1 TTTTAT
7124166 TTTTTTGTAA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
18 7 0.21
19 27 0.79
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTATATAAATTTTAATT
Found at i:7124188 original size:28 final size:28
Alignment explanation
Indices: 7124157--7124217 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
7124147 AATAAATTTT
7124157 ATTT-TTTATTTTTTTGTAATTTATAATA
1 ATTTATTTA-TTTTTTGTAATTTATAATA
*
7124185 ATTTATTTATTTTTTGTATTTTATAAT-
1 ATTTATTTATTTTTTGTAATTTATAATA
7124212 ATTTAT
1 ATTTAT
7124218 AAGTGTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 6 0.19
28 21 0.68
29 4 0.13
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (28 bp):
ATTTATTTATTTTTTGTAATTTATAATA
Found at i:7129435 original size:32 final size:32
Alignment explanation
Indices: 7129399--7129464 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
7129389 TTAATTAACC
*
7129399 AATGAATTATCAAATTAAATTAATCAATTTAT
1 AATGAATTATCAAATTAAAGTAATCAATTTAT
* * * *
7129431 AATGAGTTATTAAGTTCAAGTAATCAATTTAT
1 AATGAATTATCAAATTAAAGTAATCAATTTAT
7129463 AA
1 AA
7129465 GTTTATGATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (32 bp):
AATGAATTATCAAATTAAAGTAATCAATTTAT
Found at i:7130006 original size:30 final size:30
Alignment explanation
Indices: 7129970--7130033 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
7129960 AATTAGTGGT
*
7129970 GATTCTTTATTGATGAAAAGGATATGATAA
1 GATTCTTTATTGATGAAAAGGATATGACAA
7130000 GATTCTTTATTGATGAAAAGGATATGACAA
1 GATTCTTTATTGATGAAAAGGATATGACAA
7130030 GATT
1 GATT
7130034 GGAAAAGGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (30 bp):
GATTCTTTATTGATGAAAAGGATATGACAA
Found at i:7136978 original size:254 final size:249
Alignment explanation
Indices: 7136632--7137342 Score: 813
Period size: 254 Copynumber: 2.8 Consensus size: 249
7136622 AACCATGTTT
*
7136632 AATTGGAATAAACAATTAATTAAAGAAATCTCGAGTAGCAGTGAAAAAAAACTTCAAAAGCAACG
1 AATTGGAATAAACAA-TAA-TAAAGAAATCTCGATTAGCAGT---AAAAAACTTCAAAAGCAACG
* * *
7136697 GAGAGAAACCAATAAAATGC-A-ACAATCTTGTCAACTAAGTATTACACTGTTTTTGACTGAACT
61 GAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGA-TGAACT
* *
7136760 ATGTTCAACTTGAATAAACAGCTAATTAAAGAAATCTTGATTAGCAGTGAACAAAAAGAATCAAA
125 ATGTTCAA-TTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAACAAAAAAAATCAAA
* * * * *
7136825 AGCAAAATGCAAT-TAATCACATATGACTAAGTATTACACTGTTTTCTGTTGAACTAAGGTA
189 AGCAAAATGCAATAAAATCACAT-CGACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
* *
7136886 AATTGGAATTAACAATGAACTGAAGAAATCTCGATTAGCAGTAAAAGAACTTCAAAAGCAACGGA
1 AATTGGAATAAACAAT-AA-TAAAGAAATCTCGATTAGCAGTAAAA-AACTTCAAAAGCAACGGA
7136951 GAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGGATGAACTAT
63 GAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTT-GATGAACTAT
*
7137016 GTTCAATTTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAAACAAAAAAAAACCAAA
127 GTTCAA-TTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTG-AAC-AAAAAAAATCAAA
* * *
7137081 AGCAAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTATCTGATGAAATAAGTTC
189 AGCAAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
* * * *
7137142 AATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATT
1 AATTGGAATAAACAA-TAAT-AAAGAAATC-TCGATTAGCAGTAAAAAAC-TTCAAAAGC-AA--
* * * * * * ** ** * *
7137207 AGAAAAAAAAAACAGTAAAATACAATACAATAACAACGACTAAGTATTACACTGTTATCTGATGG
59 CG-GAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTT-TTTGATGA
* * * *
7137272 ACTAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTG---AAAAACAAT
122 ACTATGTTCAATT-GAATAAACAACTAATTAAAGAAATCTT-GATTAGCAGTGAACAAAAAAAAT
7137334 CAAAAGCAA
185 CAAAAGCAA
7137343 TTAGAAAAAG
Statistics
Matches: 396, Mismatches: 42, Indels: 35
0.84 0.09 0.07
Matches are distributed among these distances:
251 4 0.01
252 35 0.09
253 2 0.01
254 120 0.30
255 6 0.02
256 82 0.21
257 46 0.12
258 2 0.01
260 3 0.01
261 84 0.21
262 12 0.03
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.24
Consensus pattern (249 bp):
AATTGGAATAAACAATAATAAAGAAATCTCGATTAGCAGTAAAAAACTTCAAAAGCAACGGAGAG
AAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGATGAACTATGTTC
AATTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAACAAAAAAAATCAAAAGCAAAA
TGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
Found at i:7137233 original size:139 final size:139
Alignment explanation
Indices: 7137084--7137514 Score: 625
Period size: 139 Copynumber: 3.1 Consensus size: 139
7137074 AACCAAAAGC
* * *
7137084 AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTATCTGATGAAATAAGTTCAATTGGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
7137149 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
7137214 AAAAACAGT
131 AAAAACAGT
* * * *
7137223 AAAATACAATACAATAACAACGACTAAGTATTACACTGTTATCTGATGGACTAAGTTCAATTGGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
7137288 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGC-AATTAGAAAAA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
7137352 GAAAAACAGT
131 -AAAAACAGT
* *
7137362 AAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTCGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
* * * * * * * * * *
7137427 ATAAACAATTAATTAAACAAATCTT-GAGTAGCAGTTTAAAAAAAAATTAAAAGCAACTGAG-AA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAG--TGAAAAACAATCAAAAGCAAATTAGAAA
*
7137490 AACAAAACAGT
129 AAAAAAACAGT
*
7137501 AGAATACAATAAAA
1 AAAATACAATAAAA
7137515 ACTCGTCAAC
Statistics
Matches: 264, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
138 18 0.07
139 223 0.84
140 19 0.07
141 4 0.02
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.23
Consensus pattern (139 bp):
AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
AAAAACAGT
Found at i:7140116 original size:3 final size:3
Alignment explanation
Indices: 7140110--7140150 Score: 64
Period size: 3 Copynumber: 13.0 Consensus size: 3
7140100 TATATAAGTA
7140110 TAT TAT TAAGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7140151 ATATGTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 32 0.89
4 2 0.06
5 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7140233 original size:16 final size:15
Alignment explanation
Indices: 7140182--7140237 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
7140172 CAAAGTAAAA
*
7140182 AGAA-AAAGAAAAAG
1 AGAAGAAAGAAACAG
7140196 A-ATAGAAAGAAACAG
1 AGA-AGAAAGAAACAG
7140211 AGAAGAAACGAAACAG
1 AGAAGAAA-GAAACAG
* *
7140227 GGGAGAAAGAA
1 AGAAGAAAGAA
7140238 GGAGAAAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
13 1 0.03
14 2 0.06
15 18 0.51
16 14 0.40
ACGTcount: A:0.66, C:0.05, G:0.27, T:0.02
Consensus pattern (15 bp):
AGAAGAAAGAAACAG
Found at i:7140888 original size:6 final size:6
Alignment explanation
Indices: 7140873--7140903 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
7140863 GTACTTTGTG
*
7140873 TACTGC TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT T
7140904 TCCGGCTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:7143011 original size:41 final size:41
Alignment explanation
Indices: 7142895--7143032 Score: 110
Period size: 41 Copynumber: 3.5 Consensus size: 41
7142885 AGTTTGGCAT
* *
7142895 CCAGTGCCTCATCGGA-TAAT-TCAAAGTAATAATTTGACAC
1 CCAGTGCCTCATCGAATTAATCTGAAA-TAATAATTTGACAC
* * * * * *
7142935 CTAGTGTCTCATCTG--CTAAACCGAAGT-A-AA-TTGACAC
1 CCAGTGCCTCATC-GAATTAATCTGAAATAATAATTTGACAC
7142972 CCAGTGCCTCATCGAATTAATCTGAAATAATAATTTGACAC
1 CCAGTGCCTCATCGAATTAATCTGAAATAATAATTTGACAC
* * *
7143013 CCAATGTCTCATCGATTTAA
1 CCAGTGCCTCATCGAATTAA
7143033 GTTCGAAGAA
Statistics
Matches: 75, Mismatches: 15, Indels: 15
0.71 0.14 0.14
Matches are distributed among these distances:
36 1 0.01
37 18 0.24
38 10 0.13
39 2 0.03
40 17 0.23
41 27 0.36
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (41 bp):
CCAGTGCCTCATCGAATTAATCTGAAATAATAATTTGACAC
Found at i:7148660 original size:20 final size:21
Alignment explanation
Indices: 7148620--7148669 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
7148610 TATCTAGAAG
* *
7148620 TGAAATCAAGTTGAGTTGAGT
1 TGAATTCAAGTTGAGTCGAGT
7148641 TGAATTCAAG-TGAGTCGAGT
1 TGAATTCAAGTTGAGTCGAGT
7148661 TGAATTCAA
1 TGAATTCAA
7148670 ATATTTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (21 bp):
TGAATTCAAGTTGAGTCGAGT
Found at i:7151486 original size:42 final size:43
Alignment explanation
Indices: 7151418--7151562 Score: 204
Period size: 43 Copynumber: 3.4 Consensus size: 43
7151408 TTATTTGAAA
*
7151418 AAACGCCGCT-AAGATCACGACATTTAGCGGCGC-TTTCCCAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTCCCAC
* *
7151459 AAACGCCGCTAAAGATCACAACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTCCCAC
* * * *
7151502 AAACACCGCTAAAGATCACGACCTTTAGCGACGCTTTTCTCAA
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTCCCAC
*
7151545 AAACGCCGCTAAAAATCA
1 AAACGCCGCTAAAGATCA
7151563 TGAAATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
41 10 0.11
42 21 0.23
43 60 0.66
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTCCCAC
Found at i:7155247 original size:22 final size:21
Alignment explanation
Indices: 7155188--7155247 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
7155178 GTAATTCATG
* **
7155188 AATTTTATTATTTTTTAATTT
1 AATTTTTTTATTTTTTAACAT
7155209 AACTTTTTTTCA-TTTTTAACAT
1 AA-TTTTTTT-ATTTTTTAACAT
7155231 ATATTTTTTTATTTTTT
1 A-ATTTTTTTATTTTTT
7155248 TCTTTCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
21 3 0.09
22 27 0.84
23 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
AATTTTTTTATTTTTTAACAT
Found at i:7155599 original size:14 final size:14
Alignment explanation
Indices: 7155579--7155623 Score: 81
Period size: 14 Copynumber: 3.2 Consensus size: 14
7155569 CACTAAAAAT
7155579 TAAACCCTAAACTA
1 TAAACCCTAAACTA
*
7155593 TACACCCTAAACTA
1 TAAACCCTAAACTA
7155607 TAAACCCTAAACTA
1 TAAACCCTAAACTA
7155621 TAA
1 TAA
7155624 TGATAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:7156495 original size:41 final size:41
Alignment explanation
Indices: 7156396--7156648 Score: 272
Period size: 41 Copynumber: 6.3 Consensus size: 41
7156386 TTATATAACT
* *
7156396 TTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGTTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG-TC
* *
7156438 TTTAGTGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
7156479 TTTAGCGGCGTTTTACCAAAAGCGCCGC-----C-CTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * *
7156514 TTTAGCGGCGTTTTACCTAAAGCGCCGCTGATGCCCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * *
7156555 TTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTC-AGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * ** * *
7156595 TTTAGCTGCGTTTTTTACTAAAA-CGCCGCTGTTGCTCT-ATT
1 TTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGGTC
7156636 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
7156649 CTATTGCTTT
Statistics
Matches: 183, Mismatches: 19, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
35 33 0.18
36 1 0.01
39 3 0.02
40 12 0.07
41 88 0.48
42 46 0.25
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:7156566 original size:76 final size:76
Alignment explanation
Indices: 7156438--7156582 Score: 236
Period size: 76 Copynumber: 1.9 Consensus size: 76
7156428 GCTCTGGTTT
* * *
7156438 TTTAGTGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTACCAAAAGCG
1 TTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCCCTGGTCTTTAGCAGCGTTTTACCAAAAGCG
7156503 CCGCCCTGGTC
66 CCGCCCTGGTC
* * *
7156514 TTTAGCGGCGTTTTACCTAAAGCGCCGCTGATGCCCTGGTCTTTAGCAGCGTTTTACCAAAAGCG
1 TTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCCCTGGTCTTTAGCAGCGTTTTACCAAAAGCG
7156579 CCGC
66 CCGC
7156583 TAATGCTCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.28
Consensus pattern (76 bp):
TTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCCCTGGTCTTTAGCAGCGTTTTACCAAAAGCG
CCGCCCTGGTC
Found at i:7166308 original size:31 final size:31
Alignment explanation
Indices: 7166238--7166300 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
7166228 TAACTATTTT
*
7166238 AAAGTTTTTATTTAAGTTACTGGACTATTCA
1 AAAGTTTTTATTTAAGTCACTGGACTATTCA
7166269 AAAGTTTTTATTTAAGTCACTAGG-CTATTCA
1 AAAGTTTTTATTTAAGTCACT-GGACTATTCA
7166300 A
1 A
7166301 TTTTTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (31 bp):
AAAGTTTTTATTTAAGTCACTGGACTATTCA
Found at i:7167099 original size:33 final size:33
Alignment explanation
Indices: 7167052--7167116 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
7167042 TAAAATTTAC
* *
7167052 TAAGAATCGAGTTGGACGATGATGCTTGAATGT
1 TAAGAATCGAGTTGGACAATGATGCTCGAATGT
* *
7167085 TAAGAATTGGGTTGGACAATGATGCTCGAATG
1 TAAGAATCGAGTTGGACAATGATGCTCGAATG
7167117 GTCAACTACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (33 bp):
TAAGAATCGAGTTGGACAATGATGCTCGAATGT
Found at i:7167686 original size:35 final size:35
Alignment explanation
Indices: 7167638--7167715 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
7167628 TCTTTTTTCC
* * *
7167638 TTTTTTAATTTTTTTTAAAATGTTTTTACTTTA-A
1 TTTTTTTATTTTTTTTAAAATATTATTACTTTATA
* *
7167672 TTTTTTTATATTTTTTTAAATTATTATTATTTTATA
1 TTTTTTTAT-TTTTTTTAAAATATTATTACTTTATA
7167708 TTTTTTTA
1 TTTTTTTA
7167716 AAATTTAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 8 0.22
35 20 0.54
36 9 0.24
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (35 bp):
TTTTTTTATTTTTTTTAAAATATTATTACTTTATA
Found at i:7176248 original size:43 final size:43
Alignment explanation
Indices: 7176200--7176285 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
7176190 GTTTCGTCAT
7176200 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAA
1 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAA
*
7176243 AAAAACATAAAAATAAATGACTAAATTATACTCAATGACTAAA
1 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAA
7176286 TATTAAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.60, C:0.12, G:0.06, T:0.22
Consensus pattern (43 bp):
AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAA
Found at i:7176423 original size:22 final size:20
Alignment explanation
Indices: 7176395--7176448 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 20
7176385 GGCTTTAATA
7176395 TTCAATTCAGTACTCAATTTTT
1 TTCAATT-AGTACTC-ATTTTT
7176417 TTCAATTA-TA-T-ATTTTT
1 TTCAATTAGTACTCATTTTT
7176434 TTCAATTAAGTACTC
1 TTCAATT-AGTACTC
7176449 GAGTTTGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 3 0.11
20 3 0.11
21 1 0.04
22 7 0.25
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.52
Consensus pattern (20 bp):
TTCAATTAGTACTCATTTTT
Found at i:7178811 original size:12 final size:12
Alignment explanation
Indices: 7178794--7178818 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7178784 GTGAATGTTG
7178794 TCTTTTTTTTTT
1 TCTTTTTTTTTT
7178806 TCTTTTTTTTTT
1 TCTTTTTTTTTT
7178818 T
1 T
7178819 TAAATATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TCTTTTTTTTTT
Found at i:7181541 original size:31 final size:32
Alignment explanation
Indices: 7181492--7181560 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
7181482 CACTAAATCA
*
7181492 TAAATAAAATTTCGTTTT-ATTTATTAAATTACT
1 TAAA-AAAATTTCGTTTTAAGTTATTAAATTA-T
7181525 TAAAAAAATTTC-TTTTAAGTTATTAAATTAT
1 TAAAAAAATTTCGTTTTAAGTTATTAAATTAT
7181556 TAAAA
1 TAAAA
7181561 TTAATGTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
31 10 0.29
32 20 0.59
33 4 0.12
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (32 bp):
TAAAAAAATTTCGTTTTAAGTTATTAAATTAT
Found at i:7186322 original size:14 final size:15
Alignment explanation
Indices: 7186303--7186332 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7186293 ATTTACTTGG
7186303 TTTTT-CTTTTTTTT
1 TTTTTCCTTTTTTTT
7186317 TTTTTCCTTTTTTTT
1 TTTTTCCTTTTTTTT
7186332 T
1 T
7186333 AAACATGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTCCTTTTTTTT
Found at i:7187618 original size:22 final size:22
Alignment explanation
Indices: 7187587--7187631 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
7187577 CCTCTTCTAA
*
7187587 CTTAATACTTATAACTTGAAAC
1 CTTAACACTTATAACTTGAAAC
7187609 CTTAACACTTATAACTTGAAAC
1 CTTAACACTTATAACTTGAAAC
7187631 C
1 C
7187632 CCACTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.33
Consensus pattern (22 bp):
CTTAACACTTATAACTTGAAAC
Found at i:7192116 original size:64 final size:65
Alignment explanation
Indices: 7191994--7192124 Score: 185
Period size: 64 Copynumber: 2.0 Consensus size: 65
7191984 CGGAAAATAT
* *
7191994 TTTAATAATTTCTTAAAGAAAAGGATGAAATAAAGGACGTATAATTTTGCTAATTAGATTCAAAG
1 TTTAATAATTTCTTAAAGAAAAGGA-GAAATAAACGACGTATAATTTTACTAATTAGATTCAAAG
7192059 G
65 G
* * *
7192060 TTTAATAATTTCTTAAAAGAAAA-GA-AAGTAAACGAGGTATAATTTTACTGATTAGATTCAAAG
1 TTTAATAATTTCTT-AAAGAAAAGGAGAAATAAACGACGTATAATTTTACTAATTAGATTCAAAG
7192123 G
65 G
7192124 T
1 T
7192125 GATTTTTAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
64 35 0.59
66 16 0.27
67 8 0.14
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (65 bp):
TTTAATAATTTCTTAAAGAAAAGGAGAAATAAACGACGTATAATTTTACTAATTAGATTCAAAGG
Found at i:7193749 original size:6 final size:6
Alignment explanation
Indices: 7193740--7193791 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
7193730 TATGGTCAAT
* * * *
7193740 TTTAAA TTTAAA TTCAAATA TTTACA TTTAAA TTTAAA TTTGAG TTTAAA
1 TTTAAA TTTAAA TT-TAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
7193790 TT
1 TT
7193792 GAGATTTTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
6 30 0.83
7 3 0.08
8 3 0.08
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:7193768 original size:20 final size:20
Alignment explanation
Indices: 7193740--7193778 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7193730 TATGGTCAAT
7193740 TTTAAATTTAAATTCAAATA
1 TTTAAATTTAAATTCAAATA
* *
7193760 TTTACATTTAAATTTAAAT
1 TTTAAATTTAAATTCAAAT
7193779 TTGAGTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTAAATTTAAATTCAAATA
Found at i:7193988 original size:120 final size:120
Alignment explanation
Indices: 7193775--7194017 Score: 468
Period size: 120 Copynumber: 2.0 Consensus size: 120
7193765 ATTTAAATTT
7193775 AAATTTGAGTTTAAATTGAGATTTTTAATACTAGTTCAAAATAAAAAGAATGATTCTGCTTTAAA
1 AAATTTGAGTTTAAATTGAGATTTTTAATACTAGTTCAAAATAAAAAGAATGATTCTGCTTTAAA
*
7193840 TTTTAGAGACGACATTGTTGAAAGAGGTTATTATGAATTCTAAACATAAACCGTA
66 TTTTAGAGACGACATTGTTGAAAAAGGTTATTATGAATTCTAAACATAAACCGTA
*
7193895 AAATTTGAGTTTAAATTGAGATTTTTAATACTAGTTCAAAATAAAAGGAATGATTCTGCTTTAAA
1 AAATTTGAGTTTAAATTGAGATTTTTAATACTAGTTCAAAATAAAAAGAATGATTCTGCTTTAAA
7193960 TTTTAGAGACGACATTGTTGAAAAAGGTTATTATGAATTCTAAACATAAACCGTA
66 TTTTAGAGACGACATTGTTGAAAAAGGTTATTATGAATTCTAAACATAAACCGTA
7194015 AAA
1 AAA
7194018 CGGACATAAA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (120 bp):
AAATTTGAGTTTAAATTGAGATTTTTAATACTAGTTCAAAATAAAAAGAATGATTCTGCTTTAAA
TTTTAGAGACGACATTGTTGAAAAAGGTTATTATGAATTCTAAACATAAACCGTA
Found at i:7196836 original size:14 final size:13
Alignment explanation
Indices: 7196813--7196843 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
7196803 TGCCCCCTCC
7196813 ATTTATTTTTTTA
1 ATTTATTTTTTTA
7196826 ATTTAATTTTTTTA
1 ATTT-ATTTTTTTA
7196840 ATTT
1 ATTT
7196844 TTCACGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
ATTTATTTTTTTA
Found at i:7198435 original size:42 final size:40
Alignment explanation
Indices: 7198334--7198437 Score: 129
Period size: 40 Copynumber: 2.5 Consensus size: 40
7198324 GCAAAAATTG
*
7198334 TAAAACACATAGCAATAGCGGCGTTTTAACAAAAACGCCAC
1 TAAAAC-CAGAGCAATAGCGGCGTTTTAACAAAAACGCCAC
* *
7198375 TAAAACCAGAGCAATAGCGGCGTTTT-ACTAAAAAATGCCGC
1 TAAAACCAGAGCAATAGCGGCGTTTTAAC--AAAAACGCCAC
*
7198416 TAAAAACCAGAGCATTAGCGGC
1 T-AAAACCAGAGCAATAGCGGC
7198438 TCTTTTGGCA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
39 2 0.04
40 19 0.34
41 16 0.29
42 19 0.34
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.17
Consensus pattern (40 bp):
TAAAACCAGAGCAATAGCGGCGTTTTAACAAAAACGCCAC
Found at i:7198633 original size:7 final size:7
Alignment explanation
Indices: 7198618--7198761 Score: 54
Period size: 7 Copynumber: 19.4 Consensus size: 7
7198608 TTAATTATCA
*
7198618 TTATAGT
1 TTATGGT
7198625 TTATGGT
1 TTATGGT
7198632 TTATGGT
1 TTATGGT
* *
7198639 TTAAGAT
1 TTATGGT
*
7198646 ATATGGT
1 TTATGGT
**
7198653 TTGGGGT
1 TTATGGT
*
7198660 TTAAGGT
1 TTATGGT
7198667 TTATGAGT
1 TTATG-GT
7198675 TAACTATGGT
1 T---TATGGT
*
7198685 TTAAGGT
1 TTATGGT
* *
7198692 TTAAGAT
1 TTATGGT
* *
7198699 ATATGGG
1 TTATGGT
*
7198706 TTAGGGT
1 TTATGGT
7198713 TTATGAGT
1 TTATG-GT
7198721 TAACTATGGT
1 T---TATGGT
* *
7198731 TTAAGAT
1 TTATGGT
*
7198738 ATATGGT
1 TTATGGT
*
7198745 TTAGGGT
1 TTATGGT
*
7198752 TTAAGGT
1 TTATGGT
7198759 TTA
1 TTA
7198762 AGAGTTAACT
Statistics
Matches: 99, Mismatches: 30, Indels: 16
0.68 0.21 0.11
Matches are distributed among these distances:
7 79 0.80
8 6 0.06
10 6 0.06
11 8 0.08
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.45
Consensus pattern (7 bp):
TTATGGT
Found at i:7198685 original size:46 final size:45
Alignment explanation
Indices: 7198633--7198772 Score: 183
Period size: 46 Copynumber: 3.0 Consensus size: 45
7198623 GTTTATGGTT
7198633 TATGGTTTAAGATATATGGTTTGGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGGTTT-GGGTTTAAGGTTTATGAGTTAAC
* * * * *
7198679 TATGGTTTAAGGTTTAAGATATATGGG-TTAGGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGGT-T-TGGGTTTAAGGTTTATGAGTTAAC
*
7198725 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAAC
1 TATGGTTTAAGATATATGGTTT-GGGTTTAAGGTTTATGAGTTAAC
7198771 TA
1 TA
7198773 GTATTTGAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
44 1 0.01
45 4 0.05
46 69 0.87
47 4 0.05
48 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42
Consensus pattern (45 bp):
TATGGTTTAAGATATATGGTTTGGGTTTAAGGTTTATGAGTTAAC
Found at i:7198834 original size:14 final size:14
Alignment explanation
Indices: 7198817--7198873 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
7198807 GGATTATGAT
7198817 TTAGGGTTTAAGGG
1 TTAGGGTTTAAGGG
* *
7198831 TTAGGG-TTAAAGT
1 TTAGGGTTTAAGGG
* *
7198844 TTAAGGTGTAAGGG
1 TTAGGGTTTAAGGG
* *
7198858 TTTGGGGTTAAGGG
1 TTAGGGTTTAAGGG
7198872 TT
1 TT
7198874 TAGAGTTCAG
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
13 10 0.31
14 22 0.69
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (14 bp):
TTAGGGTTTAAGGG
Found at i:7198855 original size:27 final size:28
Alignment explanation
Indices: 7198816--7198868 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
7198806 AGGATTATGA
* *
7198816 TTTAGGGTTTAAGGG-TTAGGGTTAAAG
1 TTTAAGGTGTAAGGGTTTAGGGTTAAAG
*
7198843 TTTAAGGTGTAAGGGTTTGGGGTTAA
1 TTTAAGGTGTAAGGGTTTAGGGTTAA
7198869 GGGTTTAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (28 bp):
TTTAAGGTGTAAGGGTTTAGGGTTAAAG
Found at i:7199277 original size:75 final size:74
Alignment explanation
Indices: 7199101--7199475 Score: 642
Period size: 75 Copynumber: 5.0 Consensus size: 74
7199091 TGGCTTCCAA
* *
7199101 ATTATATCAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTAAAAAACGCCACA
7199166 AAAAACACT
66 AAAAACACT
* **
7199175 ATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTAAAAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTT-TTAAAAAACGCCAC
7199240 AAAAAACACT
65 AAAAAACACT
*
7199250 ATTATAACAAATAAAAATAAATATGAAAATTAAAAGATTAGTGGCGTTTTTTAAAAAACGCCACA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTAAAAAACGCCACA
7199315 AAAAACACT
66 AAAAACACT
* *
7199324 ATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTTAAAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTT-TAAAAAACGCCAC
7199389 AAAAAACACT
65 AAAAAACACT
*
7199399 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCCTTTTTTTAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGG-CGTTTTTTAAAAAACGCCAC
7199464 AAAAAACACT
65 AAAAAACACT
7199474 AT
1 AT
7199476 GAAAACGGCG
Statistics
Matches: 283, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
74 119 0.42
75 158 0.56
76 6 0.02
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (74 bp):
ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTAAAAAACGCCACA
AAAAACACT
Found at i:7199288 original size:149 final size:149
Alignment explanation
Indices: 7199101--7199475 Score: 696
Period size: 149 Copynumber: 2.5 Consensus size: 149
7199091 TGGCTTCCAA
*
7199101 ATTATATCAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
7199166 AAAAACACTATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTAAAAAA
66 AAAAACACTATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTAAAAAA
7199231 AAACGCCACAAAAAACACT
131 AAACGCCACAAAAAACACT
* *
7199250 ATTATAACAAATAAAAATAAATATGAAAATTAAAAGATTAGTGGCGTTTTTTAAAAAACGCCACA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
*
7199315 AAAAACACTATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTTAAAAA
66 AAAAACACTATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTAAAAAA
7199380 AAACGCCACAAAAAACACT
131 AAACGCCACAAAAAACACT
*
7199399 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCCTTTTTTTAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTT-AAAAACGCCAC
7199464 AAAAAACACTAT
65 AAAAAACACTAT
7199476 GAAAACGGCG
Statistics
Matches: 218, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
149 195 0.89
150 23 0.11
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (149 bp):
ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
AAAAACACTATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTAAAAAA
AAACGCCACAAAAAACACT
Found at i:7199628 original size:18 final size:18
Alignment explanation
Indices: 7199605--7199648 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
7199595 CCTAAAACAG
* *
7199605 ATTTCCCC-AATTCTCTAC
1 ATTTCCCCTAA-TCCCTAA
7199623 ATTTCCCCTAATCCCTAA
1 ATTTCCCCTAATCCCTAA
7199641 ATTTCCCC
1 ATTTCCCC
7199649 CAAAATCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.23, C:0.41, G:0.00, T:0.36
Consensus pattern (18 bp):
ATTTCCCCTAATCCCTAA
Found at i:7203876 original size:43 final size:43
Alignment explanation
Indices: 7203804--7203965 Score: 220
Period size: 43 Copynumber: 3.8 Consensus size: 43
7203794 GTTTTTGGGG
* * * *
7203804 AAAGCGTCGCTAAAGATCAT-GTCGTTAGCGGCGTTTTTTAAA
1 AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTAAA
* *
7203846 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTTTAAAAA
1 AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTT-TAAA
* * *
7203890 AAAGCACCGCTAAAGGTCCTGTTCTTTAGCGGCGTTTCTTAAA
1 AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTAAA
7203933 AAAGCGCCGCTAAAGGTCCTGGTC-TTAGCGGCG
1 AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCG
7203966 GTGTATATAG
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 26 0.25
43 42 0.40
44 38 0.36
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTAAA
Found at i:7204368 original size:22 final size:22
Alignment explanation
Indices: 7204325--7204368 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7204315 AGAGAGAACC
* **
7204325 AAATTATATAAATAAATTTAAA
1 AAATAATATAAATAAAAATAAA
*
7204347 AAATAATATATATAAAAATAAA
1 AAATAATATAAATAAAAATAAA
7204369 TTTAAGAGAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
AAATAATATAAATAAAAATAAA
Found at i:7204382 original size:28 final size:28
Alignment explanation
Indices: 7204329--7204383 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
7204319 AGAACCAAAT
* *
7204329 TATATAAATAAATTTAAAAAATAATATA
1 TATAAAAATAAATTTAAAAAAGAATATA
* *
7204357 TATAAAAATAAATTTAAGAGAGAATAT
1 TATAAAAATAAATTTAAAAAAGAATAT
7204384 TTACATGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
TATAAAAATAAATTTAAAAAAGAATATA
Found at i:7212636 original size:14 final size:15
Alignment explanation
Indices: 7212617--7212645 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7212607 CCTCCTTGTT
7212617 TGCAAT-CATGGATG
1 TGCAATCCATGGATG
7212631 TGCAATCCATGGATG
1 TGCAATCCATGGATG
7212646 ATAATGTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (15 bp):
TGCAATCCATGGATG
Found at i:7217099 original size:2 final size:2
Alignment explanation
Indices: 7217083--7217141 Score: 93
Period size: 2 Copynumber: 30.0 Consensus size: 2
7217073 TAATGTTAAA
*
7217083 AT AT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7217124 AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT
7217142 GAAAAATGTG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7217678 original size:27 final size:26
Alignment explanation
Indices: 7217639--7217718 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
7217629 AAAGTAAACA
7217639 ATAAAACAATTTAAAATAAATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
**
7217665 ATAAAACAAGTTTAAAATAAATAATGT
1 ATAAAACAA-TTTAAAATAAATAATAC
* * **
7217692 ATAAAGCATTTTAAAATCTATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
7217718 A
1 A
7217719 CAAAGCAAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
26 23 0.51
27 22 0.49
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (26 bp):
ATAAAACAATTTAAAATAAATAATAC
Found at i:7217860 original size:50 final size:50
Alignment explanation
Indices: 7217802--7217904 Score: 206
Period size: 50 Copynumber: 2.1 Consensus size: 50
7217792 TAATAAGGAG
7217802 TTTAAAATATATGATACGTAAAAGAACCAAAAATAGACAATATAATTATA
1 TTTAAAATATATGATACGTAAAAGAACCAAAAATAGACAATATAATTATA
7217852 TTTAAAATATATGATACGTAAAAGAACCAAAAATAGACAATATAATTATA
1 TTTAAAATATATGATACGTAAAAGAACCAAAAATAGACAATATAATTATA
7217902 TTT
1 TTT
7217905 TATAATAGTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (50 bp):
TTTAAAATATATGATACGTAAAAGAACCAAAAATAGACAATATAATTATA
Found at i:7219374 original size:18 final size:20
Alignment explanation
Indices: 7219337--7219378 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
7219327 TTCTTAAGAT
*
7219337 TTTTGGGCTCTTTTTTATTG
1 TTTTGGGCTCTTTGTTATTG
7219357 TTTTGGG-T-TTTGTTATTG
1 TTTTGGGCTCTTTGTTATTG
7219375 TTTT
1 TTTT
7219379 ATTTGTCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
19 1 0.05
20 7 0.33
ACGTcount: A:0.05, C:0.05, G:0.21, T:0.69
Consensus pattern (20 bp):
TTTTGGGCTCTTTGTTATTG
Found at i:7219475 original size:2 final size:2
Alignment explanation
Indices: 7219468--7219494 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7219458 TAATTCATAA
7219468 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7219495 AAAAGAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7220128 original size:42 final size:42
Alignment explanation
Indices: 7220067--7220154 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
7220057 AGTTGATAGA
*
7220067 ATAATTAGACAGCAACGTGCCACTTATAACTCAAGCTAACGT
1 ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
* *
7220109 ATAATTAGACAGCAGCGTGCCACGTATAGCTCAAGCTAACGT
1 ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
7220151 ATAA
1 ATAA
7220155 AGACCTACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
Found at i:7220486 original size:14 final size:15
Alignment explanation
Indices: 7220456--7220486 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7220446 TAATATTTTA
7220456 AAATTTATTTAACTT
1 AAATTTATTTAACTT
7220471 AAATTTATTT-ACTT
1 AAATTTATTTAACTT
7220485 AA
1 AA
7220487 TATATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (15 bp):
AAATTTATTTAACTT
Found at i:7220724 original size:84 final size:84
Alignment explanation
Indices: 7220607--7220775 Score: 329
Period size: 84 Copynumber: 2.0 Consensus size: 84
7220597 ACAGAGTATC
*
7220607 AATAAGAGTAGAGAAAGGGTCGTATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
1 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
7220672 AAAACTGAGAATGGAGAGG
66 AAAACTGAGAATGGAGAGG
7220691 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
1 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
7220756 AAAACTGAGAATGGAGAGG
66 AAAACTGAGAATGGAGAGG
7220775 A
1 A
7220776 CTTAGCCTCT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.41, C:0.11, G:0.33, T:0.15
Consensus pattern (84 bp):
AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
AAAACTGAGAATGGAGAGG
Found at i:7232224 original size:18 final size:18
Alignment explanation
Indices: 7232196--7232239 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
7232186 GTTTTACCGA
7232196 AGATCAAATTCAT-AGTTTG
1 AGAT-AAATTCATCA-TTTG
7232215 AGATAAATTCATCATTTG
1 AGATAAATTCATCATTTG
7232233 AGATAAA
1 AGATAAA
7232240 AGTTACCTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (18 bp):
AGATAAATTCATCATTTG
Found at i:7233338 original size:20 final size:21
Alignment explanation
Indices: 7233304--7233357 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
7233294 TGATGATCTT
*
7233304 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
7233325 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
7233345 TTTTATTATTTTA
1 TTATATTATTTTA
7233358 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:7233361 original size:3 final size:3
Alignment explanation
Indices: 7233343--7233391 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
7233333 TTTAATGAGA
*
7233343 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
7233388 TAT T
1 TAT T
7233392 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:7233363 original size:11 final size:11
Alignment explanation
Indices: 7233347--7233385 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
7233337 ATGAGATATT
7233347 TTATTATTTTA
1 TTATTATTTTA
*
7233358 TTATTATTTCA
1 TTATTATTTTA
7233369 TTATTATTTTA
1 TTATTATTTTA
7233380 TTATTA
1 TTATTA
7233386 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:7233371 original size:19 final size:19
Alignment explanation
Indices: 7233343--7233384 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7233333 TTTAATGAGA
*
7233343 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
7233362 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
7233381 TATT
1 TATT
7233385 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:7235503 original size:23 final size:23
Alignment explanation
Indices: 7235472--7235591 Score: 73
Period size: 23 Copynumber: 5.1 Consensus size: 23
7235462 TAGCTCTTAA
*
7235472 GAGCGTCCCGATAGGCTCTTTGT
1 GAGCTTCCCGATAGGCTCTTTGT
**
7235495 GAGCTTCCCGATAGTGCTCGCT-T
1 GAGCTTCCCGATAG-GCTCTTTGT
* * * **
7235518 GAACTTCCTGATATACGGCTATCCG-
1 GAGCTTCCCG--ATA-GGCTCTTTGT
* *
7235543 GAACTTCCCGATAGGCTCTTCGT
1 GAGCTTCCCGATAGGCTCTTTGT
* *
7235566 GAGCTTTCCGATATGGTTCTTTGT
1 GAGCTTCCCGATA-GGCTCTTTGT
7235590 GA
1 GA
7235592 ACTACCTGAT
Statistics
Matches: 75, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
22 7 0.09
23 36 0.48
24 15 0.20
25 16 0.21
26 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.25, T:0.33
Consensus pattern (23 bp):
GAGCTTCCCGATAGGCTCTTTGT
Found at i:7237880 original size:30 final size:29
Alignment explanation
Indices: 7237844--7237931 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 29
7237834 CTTGGGGGTC
7237844 TATCAGTGCTTTTCCTCGGTTTCTCCCTGG
1 TATCAGTGCTTTTCCT-GGTTTCTCCCTGG
7237874 TATCAGTGCTTTTCCTTGGTTTCTCCCTGG
1 TATCAGTGCTTTTCC-TGGTTTCTCCCTGG
* * *
7237904 TATCGGTGCTTCTTCGTGGTTTGTCCCT
1 TATCAGTGCTT-TTCCTGGTTTCTCCCT
7237932 TTGATCCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 49 0.92
31 4 0.08
ACGTcount: A:0.06, C:0.27, G:0.22, T:0.45
Consensus pattern (29 bp):
TATCAGTGCTTTTCCTGGTTTCTCCCTGG
Found at i:7238938 original size:20 final size:20
Alignment explanation
Indices: 7238913--7238953 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7238903 AAGAATACAG
7238913 TGTCTATAAATATATGTATT
1 TGTCTATAAATATATGTATT
7238933 TGTCTATAAATATATGTATT
1 TGTCTATAAATATATGTATT
7238953 T
1 T
7238954 ATTCACATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (20 bp):
TGTCTATAAATATATGTATT
Found at i:7238999 original size:106 final size:106
Alignment explanation
Indices: 7238847--7239039 Score: 359
Period size: 106 Copynumber: 1.8 Consensus size: 106
7238837 TGTATATACA
*
7238847 TATTCACATTTAAAATTGTTTTCCCTAGCTGAACTTGCGTGTACTTGTGCATTTAAAAGAATACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAACTTGCATGTACTTGTGCATTTAAAAGAATACA
7238912 GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
66 GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
* *
7238953 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAGTACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAACTTGCATGTACTTGTGCATTTAAAAGAATACA
7239018 GTGTCTATAAATATATGTATTT
66 GTGTCTATAAATATATGTATTT
7239040 TTTCACATTT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 84 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (106 bp):
TATTCACATTTAAAATTGTTTTCCCTAGCTGAACTTGCATGTACTTGTGCATTTAAAAGAATACA
GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
Found at i:7242202 original size:43 final size:44
Alignment explanation
Indices: 7242154--7242241 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
7242144 TCTAATTTGA
* *
7242154 TACCTAAACTTGACAC-TTTTTCTTAAGTTGGTACTTAATATTT
1 TACCTAAACTTGACACTTTTTTCCTAAGTTGGTACCTAATATTT
* * *
7242197 TACCTAAACTTGACTCTTTTTTCCTAATTTGGTACCTAATCTTT
1 TACCTAAACTTGACACTTTTTTCCTAAGTTGGTACCTAATATTT
7242241 T
1 T
7242242 TTTTTGTTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 15 0.38
44 24 0.62
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (44 bp):
TACCTAAACTTGACACTTTTTTCCTAAGTTGGTACCTAATATTT
Found at i:7244390 original size:27 final size:27
Alignment explanation
Indices: 7244356--7244410 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7244346 TTTAATATTC
7244356 AATCAATGGCTGTGATTTCCTTTCTTT
1 AATCAATGGCTGTGATTTCCTTTCTTT
7244383 AATCAATGGCTGTGATTTCCTTTCTTT
1 AATCAATGGCTGTGATTTCCTTTCTTT
7244410 A
1 A
7244411 TTACAAGACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (27 bp):
AATCAATGGCTGTGATTTCCTTTCTTT
Found at i:7248896 original size:9 final size:9
Alignment explanation
Indices: 7248875--7248904 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
7248865 AGAACTATAA
7248875 AAAAATTATT
1 AAAAATTA-T
7248885 AAAAATTAT
1 AAAAATTAT
7248894 AAAAATTAT
1 AAAAATTAT
7248903 AA
1 AA
7248905 CTATTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.60
10 8 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7249177 original size:16 final size:16
Alignment explanation
Indices: 7249156--7249186 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7249146 AAATATTTCT
7249156 AAAAAAACAATAATTA
1 AAAAAAACAATAATTA
7249172 AAAAAAACAATAATT
1 AAAAAAACAATAATT
7249187 TTTGGAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAAACAATAATTA
Found at i:7253244 original size:26 final size:26
Alignment explanation
Indices: 7253213--7253268 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
7253203 TGAGATGCCC
7253213 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
* *
7253239 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
7253265 ATCA
1 ATCA
7253269 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:7254634 original size:40 final size:40
Alignment explanation
Indices: 7254590--7254736 Score: 240
Period size: 40 Copynumber: 3.7 Consensus size: 40
7254580 CCAACCCAAT
* *
7254590 TGCCTTCGAGATTTAGCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGAGACTTAACCCGGATATAACAACCAGCACGAA
* * *
7254630 TGCCTTCGGGACTTATCCCGGATATAACAACCAGCACAAA
1 TGCCTTCGAGACTTAACCCGGATATAACAACCAGCACGAA
*
7254670 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGAGACTTAACCCGGATATAACAACCAGCACGAA
7254710 TGCCTTCGAGACTTAACCCGGATATAA
1 TGCCTTCGAGACTTAACCCGGATATAA
7254737 TCCTCAATTG
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (40 bp):
TGCCTTCGAGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:7260472 original size:75 final size:75
Alignment explanation
Indices: 7260353--7260524 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
7260343 CATGGCAAAG
** *
7260353 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
7260412 CCATACTGAGC
65 CCATACCGAGC
7260423 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
7260488 CATACCGAGT
66 CATACCGAGC
***
7260498 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
7260525 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:7260491 original size:35 final size:35
Alignment explanation
Indices: 7260356--7260522 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
7260346 GGCAAAGTGT
* **
7260356 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
7260391 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
7260426 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
7260466 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
7260502 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
7260523 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:7260514 original size:36 final size:35
Alignment explanation
Indices: 7260452--7260522 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
7260442 ATTATCAAAT
* *
7260452 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
7260487 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
7260523 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:7267973 original size:75 final size:75
Alignment explanation
Indices: 7267854--7268024 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
7267844 CATGGCAAAG
** *
7267854 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
7267913 CCATACTGAGC
65 CCATACCGAGC
7267924 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
7267989 CATACCGAGT
66 CATACCGAGC
***
7267999 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
7268025 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:7267992 original size:35 final size:35
Alignment explanation
Indices: 7267857--7268022 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
7267847 GGCAAAGTGT
* **
7267857 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
7267892 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
7267927 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
7267967 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
7268002 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
7268023 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:7270824 original size:25 final size:25
Alignment explanation
Indices: 7270795--7270845 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7270785 AAGATAATTT
7270795 CATTATAGGTTAAAGTGAATGAAAG
1 CATTATAGGTTAAAGTGAATGAAAG
*
7270820 CATTATAGGTTAAAGTGAATGGAAG
1 CATTATAGGTTAAAGTGAATGAAAG
7270845 C
1 C
7270846 TGTGCACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.06, G:0.25, T:0.27
Consensus pattern (25 bp):
CATTATAGGTTAAAGTGAATGAAAG
Found at i:7273385 original size:26 final size:26
Alignment explanation
Indices: 7273354--7273409 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
7273344 TGAAATGCCC
7273354 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
* *
7273380 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
7273406 ATCA
1 ATCA
7273410 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:7284090 original size:13 final size:14
Alignment explanation
Indices: 7284069--7284106 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
7284059 TCACTTTCTC
7284069 ATTTCATTTAAT-A
1 ATTTCATTTAATCA
*
7284082 ATTTAATTT-ATCA
1 ATTTCATTTAATCA
7284095 ATTTCATTTAAT
1 ATTTCATTTAAT
7284107 TTTTTCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 2 0.10
13 17 0.81
14 2 0.10
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTCATTTAATCA
Found at i:7284804 original size:18 final size:19
Alignment explanation
Indices: 7284781--7284817 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7284771 GATATGATAC
*
7284781 TAAAAT-TATTAAAAAAAT
1 TAAAATATATAAAAAAAAT
7284799 TAAAATATATAAAAAAAAT
1 TAAAATATATAAAAAAAAT
7284818 CAGGGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAAATATATAAAAAAAAT
Found at i:7285114 original size:23 final size:22
Alignment explanation
Indices: 7285071--7285128 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7285061 AAAAGGTATC
* *
7285071 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7285092 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
7285115 TGCATATCATATCT
1 TACAAATCATATCT
7285129 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7285131 original size:19 final size:19
Alignment explanation
Indices: 7285107--7285143 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7285097 AATCATATCT
7285107 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7285126 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
7285144 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7285151 original size:17 final size:19
Alignment explanation
Indices: 7285110--7285151 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7285100 CATATCTTCT
*
7285110 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
7285129 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
7285146 AAGATT
1 AAGATT
7285152 ATATTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:7285299 original size:21 final size:20
Alignment explanation
Indices: 7285262--7285300 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7285252 TTGGACTTCA
**
7285262 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
7285282 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
7285301 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:7285555 original size:45 final size:45
Alignment explanation
Indices: 7285499--7285689 Score: 249
Period size: 45 Copynumber: 4.3 Consensus size: 45
7285489 CGATATCTAC
*
7285499 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
7285544 TATCTTCGATCTGCTCACCGTCTAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
7285589 T-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * * * * *
7285633 TATCTCCTATTTGCTCTCCGTCTGATATAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
7285678 CATCTTGGATCT
1 TATCTTCGATCT
7285690 ATTTCGATGT
Statistics
Matches: 127, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
44 40 0.31
45 87 0.69
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:7285626 original size:89 final size:89
Alignment explanation
Indices: 7285507--7285676 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
7285497 ACTATCTTTG
*
7285507 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCACCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCACCGTCTAATAC
7285572 AGAGACGCCAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* * * * * *
7285596 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCTATTTGCTCTCCGTCTGATAT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCACCGTCTAATAC
*
7285661 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
7285677 TCATCTTGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 73 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCACCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:7285835 original size:78 final size:78
Alignment explanation
Indices: 7285706--7286000 Score: 448
Period size: 78 Copynumber: 3.8 Consensus size: 78
7285696 ATGTAAACAC
*
7285706 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
7285771 TGGATCTGCTTTA
66 TGGATCTGCTTCA
* * * *
7285784 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTTCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
7285848 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
*
7285862 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
7285927 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * * *
7285940 ATAAAGGTCAGATTTGCTATGTTTTCGATCTGTTCTCTGTCTAATATAGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
7286001 TGTTTCTTCG
Statistics
Matches: 196, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 2 0.01
78 192 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:7296214 original size:18 final size:18
Alignment explanation
Indices: 7296191--7296225 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7296181 GATATGATAC
7296191 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
7296209 TAAAATATATAAAAAAA
1 TAAAATATATAAAAAAA
7296226 GGGAAACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:7296549 original size:18 final size:19
Alignment explanation
Indices: 7296513--7296559 Score: 87
Period size: 18 Copynumber: 2.5 Consensus size: 19
7296503 AATCATATCT
7296513 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7296532 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
7296550 TCTAAGATTG
1 TCTAAGATTG
7296560 TATCATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7297079 original size:3 final size:3
Alignment explanation
Indices: 7297071--7297112 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7297061 TTGATAAAAT
7297071 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7297113 TTTTTTACTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7297341 original size:20 final size:22
Alignment explanation
Indices: 7297295--7297341 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
7297285 TCATTTCTTA
*
7297295 CTAATTACTTCTAATTAAAAAT
1 CTAATTACTCCTAATTAAAAAT
*
7297317 -AAATT-CTCCTAATT-AAAAT
1 CTAATTACTCCTAATTAAAAAT
7297336 CTAATT
1 CTAATT
7297342 TAACTCACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.24
20 12 0.57
21 4 0.19
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (22 bp):
CTAATTACTCCTAATTAAAAAT
Found at i:7300847 original size:35 final size:35
Alignment explanation
Indices: 7300820--7300986 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
7300810 CATGGCAAAG
7300820 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
7300855 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
*
7300890 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTA-T-T---ATCCATACTGAGC
** * * *
7300930 TAAGAAATGTAGGTATGGCATT-TCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTAT-CCATACTGAGC
**
7300965 TGAAAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
7300987 TCAATGAGGA
Statistics
Matches: 118, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
34 1 0.01
35 84 0.71
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 29 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:7300910 original size:40 final size:40
Alignment explanation
Indices: 7300831--7300947 Score: 131
Period size: 40 Copynumber: 3.0 Consensus size: 40
7300821 GTGAAATGTA
7300831 GGTATGGTATTATCCATACTGAGCTGTGAAA--T--GTA-
1 GGTATGGTATTATCCATACTGAGCTGTGAAATGTAGGTAT
7300866 GGTATGGTATTATCCATACTGAGCTGTGAAATGTAGGTAT
1 GGTATGGTATTATCCATACTGAGCTGTGAAATGTAGGTAT
* * **
7300906 GGTAT--TATCAAATCCATACTGAGTTAAGAAATGTAGGTAT
1 GGTATGGTAT--TATCCATACTGAGCTGTGAAATGTAGGTAT
7300946 GG
1 GG
7300948 CATTTCCCAT
Statistics
Matches: 71, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
35 31 0.44
37 1 0.01
38 3 0.04
39 3 0.04
40 33 0.46
ACGTcount: A:0.31, C:0.10, G:0.26, T:0.33
Consensus pattern (40 bp):
GGTATGGTATTATCCATACTGAGCTGTGAAATGTAGGTAT
Found at i:7300958 original size:75 final size:74
Alignment explanation
Indices: 7300820--7300990 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 74
7300810 CATGGCAAAG
** *
7300820 TGTGAAATGTAGGTATGGTA-TT---ATCCATACTGAGCTGTGAAATGTAGGTATGGTATTATCC
1 TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATGTAGGTATGGCATTATCC
*
7300881 ATACTGAGC
66 ATACCGAGC
*
7300890 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
1 TGTGAAATGTAGGTATGGTATT-TCAAATCCATACTGAGCTAAGAAATGTAGGTATGGCATTAT-
*
7300954 CCATACCGAGT
64 CCATACCGAGC
**
7300965 TGAAAAATGTAGGTATGGTATTTCAA
1 TGTGAAATGTAGGTATGGTATTTCAA
7300991 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 20 0.23
71 1 0.01
72 1 0.01
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (74 bp):
TGTGAAATGTAGGTATGGTATTTCAAATCCATACTGAGCTAAGAAATGTAGGTATGGCATTATCC
ATACCGAGC
Found at i:7307017 original size:26 final size:26
Alignment explanation
Indices: 7306988--7307040 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
7306978 CAAACCTGAA
* *
7306988 TTTCTCCTTTTTCT-TTTCTTTTCTTC
1 TTTCT-CTCTTTCTATTTCGTTTCTTC
7307014 TTTCTCTCTTTCTATTTCGTTTCTTC
1 TTTCTCTCTTTCTATTTCGTTTCTTC
7307040 T
1 T
7307041 CTGTAACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.02, C:0.26, G:0.02, T:0.70
Consensus pattern (26 bp):
TTTCTCTCTTTCTATTTCGTTTCTTC
Found at i:7307220 original size:3 final size:3
Alignment explanation
Indices: 7307212--7307239 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7307202 TTGATAAAAT
7307212 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7307240 ATATCTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7308382 original size:2 final size:2
Alignment explanation
Indices: 7308377--7308416 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7308367 TATATTCATA
7308377 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7308417 CGACATCGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7308513 original size:20 final size:20
Alignment explanation
Indices: 7308488--7308529 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7308478 TACAACACAA
*
7308488 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
**
7308508 TTCAATTTTTTATTCAATAT
1 TTCAATTTCATATTCAATAT
7308528 TT
1 TT
7308530 TCCTAAATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:7308979 original size:20 final size:20
Alignment explanation
Indices: 7308938--7308984 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7308928 CTGTGAGTTC
**
7308938 TTCTTTCTTTCTATTTTTTT
1 TTCTTTCTTTCTATTTCGTT
*
7308958 TTCTTTCTTTCTGTTTCGTT
1 TTCTTTCTTTCTATTTCGTT
7308978 TTGCTTT
1 TT-CTTT
7308985 TGTCTCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.02, C:0.17, G:0.06, T:0.74
Consensus pattern (20 bp):
TTCTTTCTTTCTATTTCGTT
Done.