Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 240 of 328
Found at i:71553809 original size:19 final size:18
Alignment explanation
Indices: 71553773--71553830 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
71553763 AGAATGAACA
*
71553773 CTTT-TTTTT-TTCTTTT
1 CTTTGTTTTTCTTCATTT
71553789 CTTTGTTTTTCTTCATATT
1 CTTTGTTTTTCTTCAT-TT
* *
71553808 CTCTTTTTTTTTTTCATTT
1 CT-TTGTTTTTCTTCATTT
71553827 CTTT
1 CTTT
71553831 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 4 0.11
17 5 0.14
18 6 0.17
19 8 0.23
20 12 0.34
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTGTTTTTCTTCATTT
Found at i:71560449 original size:29 final size:29
Alignment explanation
Indices: 71560425--71560518 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
71560415 TCGCACACCC
* *
71560425 AGTGCCGTATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
71560454 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
71560483 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
71560512 AGTGCCA
1 AGTGCCA
71560519 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:71560450 original size:58 final size:58
Alignment explanation
Indices: 71560387--71560518 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 58
71560377 GATTTAAGCC
* * * * *
71560387 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
71560445 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
71560503 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71560519 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
58 61 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:71562118 original size:21 final size:21
Alignment explanation
Indices: 71562094--71562163 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
71562084 TGATATGAAC
*
71562094 TCATTGAGTTGTGGTTTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * *
71562115 TCA-TGATATATGTGACATCTGAGC
1 TCATTGA-GT-TGTG--GTCTGAGT
71562139 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
71562160 TCAT
1 TCAT
71562164 GATGTATACG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 14 0.38
22 4 0.11
23 4 0.11
24 9 0.24
25 3 0.08
ACGTcount: A:0.20, C:0.11, G:0.27, T:0.41
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:71564395 original size:40 final size:40
Alignment explanation
Indices: 71564336--71564502 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
71564326 CATTTGAATG
* * *
71564336 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
71564376 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * **
71564416 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
71564456 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
71564496 ATATCCG
1 ATATCCG
71564503 ATTAAATCCC
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 98 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:71566512 original size:16 final size:18
Alignment explanation
Indices: 71566491--71566523 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71566481 ATATTTATTC
71566491 CTATA-TTAA-TATATCA
1 CTATATTTAACTATATCA
71566507 CTATATTTAACTATATC
1 CTATATTTAACTATATC
71566524 TATCCCAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (18 bp):
CTATATTTAACTATATCA
Found at i:71569899 original size:14 final size:13
Alignment explanation
Indices: 71569878--71569910 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
71569868 AAATATTTAA
71569878 CTTGTTCTTAATT
1 CTTGTTCTTAATT
71569891 CTGTGTTCTTAATT
1 CT-TGTTCTTAATT
71569905 CTTGTT
1 CTTGTT
71569911 ATGATATCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:71584452 original size:23 final size:24
Alignment explanation
Indices: 71584408--71584452 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
71584398 CAAATATTAC
*
71584408 ATAATATAAAATATAAATATTTTA
1 ATAATATAAAATATAAACATTTTA
*
71584432 ATAATA-AAAATATGAACATTT
1 ATAATATAAAATATAAACATTT
71584453 GTTTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (24 bp):
ATAATATAAAATATAAACATTTTA
Found at i:71585432 original size:20 final size:20
Alignment explanation
Indices: 71585409--71585462 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 20
71585399 ATTCTTTAGA
*
71585409 ATTTTAAATTTTTAATAAAT
1 ATTTTGAATTTTTAATAAAT
* *
71585429 ATTTTTTGTATTTTTTATAAAT
1 A--TTTTGAATTTTTAATAAAT
71585451 ATTTTGAATTTT
1 ATTTTGAATTTT
71585463 AAAATTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 11 0.39
22 17 0.61
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (20 bp):
ATTTTGAATTTTTAATAAAT
Found at i:71585838 original size:28 final size:29
Alignment explanation
Indices: 71585783--71585840 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
71585773 ATTAAATATT
**
71585783 AAATTAAAAATAATATAAATATTTTTAAA
1 AAATTAAAAATAATATAAATATGCTTAAA
* *
71585812 AAATTTAAAA-AATATAAGTATGCTTAAA
1 AAATTAAAAATAATATAAATATGCTTAAA
71585840 A
1 A
71585841 TGAATTTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 16 0.64
29 9 0.36
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (29 bp):
AAATTAAAAATAATATAAATATGCTTAAA
Found at i:71586432 original size:29 final size:30
Alignment explanation
Indices: 71586400--71586488 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 30
71586390 TTGATTTAAT
71586400 GTGTAATTGTATACATG-AACTTTAATTTG
1 GTGTAATTGTATACATGAAACTTTAATTTG
* * *
71586429 GTGTAATTATACACATGAAACTCTAATTGTG
1 GTGTAATTGTATACATGAAACTTTAATT-TG
* *
71586460 GT-TCAAATGTATACTTGAAACTTTAATTT
1 GTGT-AATTGTATACATGAAACTTTAATTT
71586489 TTATTTAATC
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 15 0.31
30 11 0.22
31 23 0.47
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.42
Consensus pattern (30 bp):
GTGTAATTGTATACATGAAACTTTAATTTG
Found at i:71586909 original size:29 final size:30
Alignment explanation
Indices: 71586867--71586923 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
71586857 CCAAAATTTG
* *
71586867 AAATTGTGGGTTCATCTATTT-TAAAAAAT
1 AAATTATGGATTCATCTATTTCTAAAAAAT
*
71586896 AAATTATGGATTCATCTTTTTCTAAAAA
1 AAATTATGGATTCATCTATTTCTAAAAA
71586924 CAAATTCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.42
Consensus pattern (30 bp):
AAATTATGGATTCATCTATTTCTAAAAAAT
Found at i:71586928 original size:29 final size:29
Alignment explanation
Indices: 71586867--71586939 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
71586857 CCAAAATTTG
* * *
71586867 AAATTGTGGGTTCATCTATTTTAAAAAAT
1 AAATTATGGATTCATCTATTTTAAAAAAC
*
71586896 AAATTATGGATTCATCT-TTTTCTAAAAAC
1 AAATTATGGATTCATCTATTTT-AAAAAAC
* *
71586925 AAATTCTAGATTCAT
1 AAATTATGGATTCAT
71586940 ACCTAAACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 4 0.11
29 33 0.89
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (29 bp):
AAATTATGGATTCATCTATTTTAAAAAAC
Found at i:71596340 original size:39 final size:39
Alignment explanation
Indices: 71596261--71596413 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
71596251 TATGGTAACC
** *
71596261 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
71596301 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
71596340 CGCACAATTACCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
71596379 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
71596414 TCGAACATTC
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 88 0.85
40 16 0.15
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:71596344 original size:79 final size:78
Alignment explanation
Indices: 71596231--71596412 Score: 247
Period size: 78 Copynumber: 2.3 Consensus size: 78
71596221 TCATTCAAAC
* * * ** *
71596231 GCCTTCGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGACCTTCGGG-CTTAACCCGGATATCA
71596296 CAACTCGCACAATT
65 CAACTCGCACAATT
* ** *
71596310 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTACCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGACCTTCGGGCTTAACCCGGATATCAC
* *
71596375 AATTTGCACAATT
66 AACTCGCACAATT
71596388 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
71596413 CTCGAACATT
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
78 52 0.57
79 39 0.43
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGACCTTCGGGCTTAACCCGGATATCAC
AACTCGCACAATT
Found at i:71598666 original size:30 final size:29
Alignment explanation
Indices: 71598572--71598673 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
71598562 TATAGTGAAT
* * *
71598572 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
71598601 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
71598629 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
71598659 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
71598674 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:71606510 original size:30 final size:29
Alignment explanation
Indices: 71606416--71606517 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
71606406 TATAGTGAAT
* * *
71606416 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
71606445 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
71606473 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
71606503 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
71606518 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:71611047 original size:13 final size:13
Alignment explanation
Indices: 71611029--71611055 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
71611019 CATCATCCCC
71611029 TGCGGCCCGATCG
1 TGCGGCCCGATCG
71611042 TGCGGCCCGATCG
1 TGCGGCCCGATCG
71611055 T
1 T
71611056 ATGGCCCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.37, G:0.37, T:0.19
Consensus pattern (13 bp):
TGCGGCCCGATCG
Found at i:71612198 original size:6 final size:6
Alignment explanation
Indices: 71612180--71612267 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
71612170 AAGAAACATT
* *
71612180 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
71612229 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71612268 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:71612225 original size:31 final size:31
Alignment explanation
Indices: 71612189--71612267 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
71612179 TATCAGAACT
* *
71612189 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
71612220 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
71612251 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
71612268 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:71612726 original size:53 final size:54
Alignment explanation
Indices: 71612686--71612959 Score: 432
Period size: 53 Copynumber: 5.2 Consensus size: 54
71612676 TACCTCACAA
* *
71612686 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
* *
71612740 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
* * *
71612794 GGTATTTCGGTAATTCTACCCTACA-GGGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
71612847 GGTATTTC-GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
* *
71612900 GGTATTTCAGTAATTCTA-CCTACAGGGGTATTCCGGTAATTCTA-CCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
71612951 GGTATTTCG
1 GGTATTTCG
71612960 ATATTATACA
Statistics
Matches: 205, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
51 9 0.04
52 22 0.11
53 91 0.44
54 83 0.40
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGG
Found at i:71612833 original size:26 final size:27
Alignment explanation
Indices: 71612686--71612959 Score: 432
Period size: 27 Copynumber: 10.3 Consensus size: 27
71612676 TACCTCACAA
*
71612686 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71612713 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
71612740 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
71612767 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
71612794 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
71612820 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
71612847 GGTATTTC-GTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
71612873 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71612900 GGTATTTCAGTAATTCTA-CCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71612926 GGTATTCCGGTAATTCTA-CCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
71612951 GGTATTTCG
1 GGTATTTCG
71612960 ATATTATACA
Statistics
Matches: 228, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
25 9 0.04
26 77 0.34
27 142 0.62
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:71613008 original size:27 final size:27
Alignment explanation
Indices: 71612950--71613128 Score: 179
Period size: 27 Copynumber: 6.7 Consensus size: 27
71612940 TCTACCTACA
* *
71612950 GGGTATTTCGAT-ATTATACAAATC-G
1 GGGTATTTTGATAATTTTACAAATCAG
* *
71612975 AGAGTATTTTGATAATTTCACAAATCAG
1 -GGGTATTTTGATAATTTTACAAATCAG
* *
71613003 GGGTATTTTGGTAATTTTACAAGTCAG
1 GGGTATTTTGATAATTTTACAAATCAG
*
71613030 GGGTATTTT-AGTAATTTTACAAACCAG
1 GGGTATTTTGA-TAATTTTACAAATCAG
*
71613057 GGGTATTTT-AGTAATTTTACAAACCAG
1 GGGTATTTTGA-TAATTTTACAAATCAG
* **
71613084 GGGTATTTTGGTAATTTTACTGATC-G
1 GGGTATTTTGATAATTTTACAAATCAG
*
71613110 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGATAATTTT
71613129 GTAAACTAAG
Statistics
Matches: 133, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
26 11 0.08
27 121 0.91
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGATAATTTTACAAATCAG
Found at i:71613036 original size:54 final size:54
Alignment explanation
Indices: 71612978--71613155 Score: 198
Period size: 54 Copynumber: 3.3 Consensus size: 54
71612968 CAAATCGAGA
* **
71612978 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAGGG
1 GTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGG
* *
71613032 GTATTTT-AGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGA-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGG
* ** ** * *
71613086 GTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGATAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACCAGGG
**
71613140 GTATTTCAATAATTTT
1 GTATTTTGATAATTTT
71613156 GTAAATCGAG
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.02
54 102 0.98
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (54 bp):
GTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGG
Found at i:71613140 original size:27 final size:27
Alignment explanation
Indices: 71612978--71613160 Score: 154
Period size: 27 Copynumber: 6.8 Consensus size: 27
71612968 CAAATCGAGA
* * *
71612978 GTATTTT-GATAATTTCACAAATCAGGG
1 GTATTTTAG-TAATTTTATAAACCAGGG
* * **
71613005 GTATTTTGGTAATTTTACAAGTCAGGG
1 GTATTTTAGTAATTTTATAAACCAGGG
*
71613032 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTAGTAATTTTATAAACCAGGG
*
71613059 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTAGTAATTTTATAAACCAGGG
* * * *
71613086 GTATTTTGGTAATTTTACTGATCGA-GG
1 GTATTTTAGTAATTTTA-TAAACCAGGG
* * * *
71613113 GTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTAGTAATTTTATAAACCAGGG
* * *
71613140 GTATTTCAATAATTTTGTAAA
1 GTATTTTAGTAATTTTATAAA
71613161 TCGAGGATAA
Statistics
Matches: 136, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
26 4 0.03
27 128 0.94
28 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTAGTAATTTTATAAACCAGGG
Found at i:71613142 original size:81 final size:81
Alignment explanation
Indices: 71612978--71613155 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 81
71612968 CAAATCGAGA
* *
71612978 GTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGT
1 GTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGT
*
71613042 AATTTTACAAACCAGGG
65 AATTTTACAAACCAAGG
* *
71613059 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC-TGATC-GAGGGTATTTTGG
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAG-TCAG-GGGTATTTTAG
** *
71613122 TAATTTTGTAAACTAAGG
64 TAATTTTACAAACCAAGG
* *
71613140 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
71613156 GTAAATCGAG
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
80 2 0.02
81 81 0.96
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGTA
ATTTTACAAACCAAGG
Found at i:71613179 original size:27 final size:27
Alignment explanation
Indices: 71613149--71613344 Score: 284
Period size: 27 Copynumber: 7.3 Consensus size: 27
71613139 GGTATTTCAA
* * *
71613149 TAATTTTGTAAATCGAGGATAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
71613176 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
71613203 TAATTCTATAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
71613230 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
**
71613257 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
71613284 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
71613311 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
71613338 TAATTCT
1 TAATTCT
71613345 ATCTTATTTC
Statistics
Matches: 155, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:71613389 original size:27 final size:25
Alignment explanation
Indices: 71613359--71613443 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
71613349 TATTTCAGTG
71613359 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
71613386 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
* *
71613413 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
71613440 ATTT
1 ATTT
71613444 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 38 0.79
28 6 0.12
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:71615436 original size:6 final size:6
Alignment explanation
Indices: 71615418--71615505 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
71615408 AAGAAACATT
* *
71615418 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
71615467 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71615506 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:71615463 original size:31 final size:31
Alignment explanation
Indices: 71615427--71615505 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
71615417 TATCAGAACT
* *
71615427 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
71615458 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
71615489 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
71615506 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:71616201 original size:27 final size:27
Alignment explanation
Indices: 71615925--71616198 Score: 417
Period size: 27 Copynumber: 10.2 Consensus size: 27
71615915 TACCTCACAA
* *
71615925 GGTATCTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71615952 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
71615979 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
71616006 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
71616033 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
71616059 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
71616086 GGTATTT-GATAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
71616112 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71616139 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
71616166 GGTATTCCGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
71616193 GGTATT
1 GGTATT
71616199 CCGATATTAT
Statistics
Matches: 225, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 47 0.21
27 178 0.79
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:71616224 original size:133 final size:133
Alignment explanation
Indices: 71615953--71616233 Score: 395
Period size: 133 Copynumber: 2.1 Consensus size: 133
71615943 CCCTACAGGG
* * * *
71615953 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTA
1 GTATTTGA-TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTA
* * * **
71616018 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTAT
65 ATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGTATTCCGATAATTATACCAAAT
*
71616083 AGGG
130 AGGA
*
71616087 GTATTTGATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAA
1 GTATTTGATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAA
*
71616152 TTCTACCCTACAGGGGTATTCCGGTAATTCTATCCTACAGGGGTATTCCGAT-ATTATA-CAAAT
66 TTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACA-GGGTATTCCGATAATTATACCAAAT
*
71616215 CGAGA
130 AG-GA
71616220 GTATTTTGATAATT
1 GTA-TTTGATAATT
71616234 TCACAAATCA
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
132 4 0.03
133 99 0.76
134 28 0.21
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (133 bp):
GTATTTGATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAA
TTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGTATTCCGATAATTATACCAAATA
GGA
Found at i:71616249 original size:160 final size:160
Alignment explanation
Indices: 71615933--71616252 Score: 423
Period size: 160 Copynumber: 2.0 Consensus size: 160
71615923 AAGGTATCTC
* * *
71615933 GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* * * * ** *
71615998 CCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGTA
66 CCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGATAATTATACAATACAGAGTA
**
71616063 TTGCGATAATTCTACCCTATAGGGGTATTT
131 TTGCGATAATTCTACCAAATAGGGGTATTT
*
71616093 GATAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* *
71616158 CCTACAGGGGTATTCCGGTAATTCTATCCTACAGGGGTATTCCGAT-ATTATACAA-ATCGAGAG
66 CCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGATAATTATACAATA-C-AGAG
**
71616221 TATTTTGATAATT-T-CACAAATCAGGGGTATTT
129 TATTGCGATAATTCTAC-CAAAT-AGGGGTATTT
71616253 TGGTAATTTT
Statistics
Matches: 139, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
158 2 0.01
159 11 0.08
160 126 0.91
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (160 bp):
GATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCCGATAATTATACAATACAGAGTA
TTGCGATAATTCTACCAAATAGGGGTATTT
Found at i:71616250 original size:27 final size:27
Alignment explanation
Indices: 71616220--71616345 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
71616210 CAAATCGAGA
* *
71616220 GTATTTTGATAATTTCACAAATCAGGG
1 GTATTTTGATAATTTTACAAACCAGGG
* **
71616247 GTATTTTGGTAATTTTACAAGTCAGGG
1 GTATTTTGATAATTTTACAAACCAGGG
71616274 GTATTTT-AGTAATTTTACAAACCAGGG
1 GTATTTTGA-TAATTTTACAAACCAGGG
71616301 GTATTTT-AGTAATTTTACAAACCAGGG
1 GTATTTTGA-TAATTTTACAAACCAGGG
*
71616328 GTATTTTGGTAATTTTAC
1 GTATTTTGATAATTTTAC
71616346 TGATCGAAGG
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GTATTTTGATAATTTTACAAACCAGGG
Found at i:71616287 original size:54 final size:53
Alignment explanation
Indices: 71616220--71616370 Score: 187
Period size: 54 Copynumber: 2.8 Consensus size: 53
71616210 CAAATCGAGA
* **
71616220 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAGGG
1 GTATTTTG-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGG
* *
71616274 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTT-GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGG
** *
71616328 GTATTTTGGTAATTTTACTGATC-GAAGGTATTTTGGTAATTTT
1 GTATTTT-GTAATTTTACAAATCAG-GGGTATTTTGGTAATTTT
71616371 GTAAACTAAG
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 82 0.98
55 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (53 bp):
GTATTTTGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGGG
Found at i:71616358 original size:81 final size:81
Alignment explanation
Indices: 71616220--71616397 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 81
71616210 CAAATCGAGA
* * *
71616220 GTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGT
1 GTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGTCAGAGGTATTTTAGT
*
71616284 AATTTTACAAACCAGGG
65 AATTTTACAAACCAAGG
* *
71616301 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC-TGATC-GAAGGTATTTTGG
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAG-TCAG-AGGTATTTTAG
** *
71616364 TAATTTTGTAAACTAAGG
64 TAATTTTACAAACCAAGG
* *
71616382 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
71616398 GTAAATCGAG
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.02
81 80 0.96
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGTCAGAGGTATTTTAGTA
ATTTTACAAACCAAGG
Found at i:71616421 original size:27 final size:27
Alignment explanation
Indices: 71616391--71616586 Score: 275
Period size: 27 Copynumber: 7.3 Consensus size: 27
71616381 GGTATTTCAA
* * *
71616391 TAATTTTGTAAATCGAGGATAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
71616418 TAATTCTGTAAATCGATGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
71616445 TAATTCTATAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
71616472 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
**
71616499 TAATTCTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
71616526 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
71616553 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
71616580 TAATTCT
1 TAATTCT
71616587 ATCTTATTTC
Statistics
Matches: 153, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:71616449 original size:54 final size:54
Alignment explanation
Indices: 71616391--71616588 Score: 308
Period size: 54 Copynumber: 3.7 Consensus size: 54
71616381 GGTATTTCAA
* * * * *
71616391 TAATTTTGTAAATCGAGGATAAAACAGTAATTCTGTAAATCGATGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
*
71616445 TAATTCTATAAATCGAGGGTAAAAT-GATAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATAG-TAATTCTATAAATCGAGGGTAAAACGG
*
71616499 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
*
71616553 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTAT
71616589 CTTATTTCAG
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
53 1 0.01
54 131 0.98
55 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (54 bp):
TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
Found at i:71616631 original size:27 final size:25
Alignment explanation
Indices: 71616601--71616685 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
71616591 TATTTCAGTG
71616601 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
71616628 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
* *
71616655 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
71616682 ATTT
1 ATTT
71616686 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 38 0.79
28 6 0.12
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:71623274 original size:40 final size:40
Alignment explanation
Indices: 71623112--71623313 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
71623102 CGAATGATGT
*
71623112 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
71623152 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
71623191 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
71623229 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
71623270 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
71623310 CCGG
1 CCGG
71623314 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:71623276 original size:78 final size:79
Alignment explanation
Indices: 71623111--71623262 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
71623101 TCGAATGATG
* * *
71623111 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
71623176 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
71623191 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
71623254 GTGCAAGTC
65 GTGCAAGTC
71623263 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:71631356 original size:40 final size:40
Alignment explanation
Indices: 71631194--71631395 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
71631184 CGAATGATGT
*
71631194 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
71631234 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
71631273 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
71631311 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
71631352 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
71631392 CCGG
1 CCGG
71631396 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:71631358 original size:78 final size:79
Alignment explanation
Indices: 71631193--71631344 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
71631183 TCGAATGATG
* * *
71631193 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
71631258 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
71631273 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
71631336 GTGCAAGTC
65 GTGCAAGTC
71631345 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:71637488 original size:132 final size:132
Alignment explanation
Indices: 71637251--71637646 Score: 594
Period size: 133 Copynumber: 3.0 Consensus size: 132
71637241 TGAATCCTAC
* * * * * *
71637251 AGATCCTGTTTCCCTGAAGTTGTAGTGAAGCAGACCGAAGACGGCGATTCTTGGCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTTCCTGAAGT
**
71637316 TGTTGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
71637381 TT
131 TT
*
71637383 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAAATCGAAGACGACGAATCTTGGCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTTCCTGAAGT
*
71637448 TACAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAA-T
71637513 TTT
130 TTT
* * * * *
71637516 AGATCTTGTTTCCATGAAGTTGCAGTAGAGTAGATCGAAGGCGACGAATCTTGGCTTCTTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTTCCTGAAGT
* * * * *
71637581 TGCAGTGAAGTAGATTTAAGCCATCACCCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCTGACAAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGA-AAT
71637646 T
130 T
71637647 GCAGATCGGA
Statistics
Matches: 240, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
132 118 0.49
133 120 0.50
134 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (132 bp):
AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGACGAATCTTGGCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAATT
TT
Found at i:71643639 original size:2 final size:2
Alignment explanation
Indices: 71643632--71643656 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
71643622 ATTCTTTTAC
71643632 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
71643657 TTAAAACCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:71644463 original size:130 final size:131
Alignment explanation
Indices: 71644196--71644473 Score: 310
Period size: 130 Copynumber: 2.1 Consensus size: 131
71644186 TCATTAATTC
* ** ** *
71644196 AAAAATCCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATCCTTCAAAACGAAGA-GAGACTCGATACTTAACAATTCGCGGAACCGTGCCCTAACGTG
* * * * * *
71644261 TTGAGTTGCAATTTCATGTTTGCTTAAAATAATCGAATATCACTTCGAAATTTCACTCACGTCTT
65 TTGAGTTGCAATTTCACGTCTGCTCAAAACAATCAAATATCACTTAGAAATTTCACTCACGTCTT
*
71644326 TT
130 CT
* *
71644328 TAAAATCCTTCAAAATGAAG-GAGACTCGATACTTAACAATTCGCGGAACCGTGCCCTAACGTGT
1 AAAAATCCTTCAAAACGAAGAGAGACTCGATACTTAACAATTCGCGGAACCGTGCCCTAACGTGT
* * ** *
71644392 TGGGTTGCAATTTCGCGTCTGCTCAAAACAATCAAATATTC-CTTTAG-GTTTTCACTCATGTCT
66 TGAGTTGCAATTTCACGTCTGCTCAAAACAATCAAATA-TCAC-TTAGAAATTTCACTCACGTCT
71644455 TCT
129 TCT
* *
71644458 AAAAATCTTTTAAAAC
1 AAAAATCCTTCAAAAC
71644474 AAAGGCAATA
Statistics
Matches: 120, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
130 97 0.81
131 5 0.04
132 18 0.15
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (131 bp):
AAAAATCCTTCAAAACGAAGAGAGACTCGATACTTAACAATTCGCGGAACCGTGCCCTAACGTGT
TGAGTTGCAATTTCACGTCTGCTCAAAACAATCAAATATCACTTAGAAATTTCACTCACGTCTTC
T
Found at i:71644625 original size:132 final size:131
Alignment explanation
Indices: 71644411--71644661 Score: 308
Period size: 132 Copynumber: 1.9 Consensus size: 131
71644401 ATTTCGCGTC
*
71644411 TGCTCAAAACAATCAAATATTCCTTTAGGTTTTCACTCATGTCTTCTAAAAATCTTTTAAAACAA
1 TGCTCAAAACAATCAAATATTCCTTTAGGTTTTCACTCATGTCTTCTAAAAATCTTTCAAAACAA
* * *
71644476 AGGCAATACTCGGTGTTTGATAATTCGAGAATC-ATGCCCTATCGTACTGGGTTGTGACTTTTCA
66 AGGCAATACTCGATGTTTGACAATTCGAGAACCGA-GCCCTATCGTACTGGGTTGTGACTTTTCA
71644540 TT
130 TT
* * * * *
71644542 TGCTTAAAACAATCGAATATTCCTTTTAGGTTTTCACTTATGT-TTATTAAAAATCTTTCAAAGC
1 TGCTCAAAACAATCAAATATTCC-TTTAGGTTTTCACTCATGTCTT-CTAAAAATCTTTCAAAAC
* * ** * * * *
71644606 GAAGGCGATGTTCGATGTTTGGCGATTTGAGAACCGAGCCCTATCGTGCTGGGTTG
64 AAAGGCAATACTCGATGTTTGACAATTCGAGAACCGAGCCCTATCGTACTGGGTTG
71644662 CTCTTTTTCA
Statistics
Matches: 100, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
131 23 0.23
132 76 0.76
133 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (131 bp):
TGCTCAAAACAATCAAATATTCCTTTAGGTTTTCACTCATGTCTTCTAAAAATCTTTCAAAACAA
AGGCAATACTCGATGTTTGACAATTCGAGAACCGAGCCCTATCGTACTGGGTTGTGACTTTTCAT
T
Found at i:71649208 original size:28 final size:28
Alignment explanation
Indices: 71649168--71649223 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
71649158 GACTTCACTT
71649168 GTTGTTTGACTCTGAATCAAATGATTTA
1 GTTGTTTGACTCTGAATCAAATGATTTA
71649196 GTTGTTTGACTCTGAATCAAATGATTTA
1 GTTGTTTGACTCTGAATCAAATGATTTA
71649224 TTCATTTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (28 bp):
GTTGTTTGACTCTGAATCAAATGATTTA
Found at i:71649231 original size:28 final size:28
Alignment explanation
Indices: 71649172--71649234 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
71649162 TCACTTGTTG
*
71649172 TTTGACTCTGAATCAAATGATTTAGTTG
1 TTTGACTCTGAATCAAATGATTTAGTTA
71649200 TTTGACTCTGAATCAAATGATTTA-TTCA
1 TTTGACTCTGAATCAAATGATTTAGTT-A
71649228 TTTGACT
1 TTTGACT
71649235 TGATCCGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44
Consensus pattern (28 bp):
TTTGACTCTGAATCAAATGATTTAGTTA
Found at i:71656430 original size:15 final size:16
Alignment explanation
Indices: 71656410--71656449 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
71656400 TAAATTGGAA
71656410 AAATGAAAAGTT-ATT
1 AAATGAAAAGTTAATT
* *
71656425 AAATGACAATTTAATT
1 AAATGAAAAGTTAATT
71656441 AAATGAAAA
1 AAATGAAAA
71656450 AGAAAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (16 bp):
AAATGAAAAGTTAATT
Found at i:71660833 original size:23 final size:23
Alignment explanation
Indices: 71660790--71660833 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
71660780 CATCATAATT
*
71660790 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
71660813 TCATCT-TATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
71660834 CCAAACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:71667789 original size:40 final size:40
Alignment explanation
Indices: 71667745--71667854 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
71667735 TTCACAATTT
* *
71667745 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
71667785 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
71667825 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
71667855 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:71670736 original size:47 final size:46
Alignment explanation
Indices: 71670662--71670876 Score: 159
Period size: 46 Copynumber: 4.6 Consensus size: 46
71670652 GTAAGGTGCT
* * * *
71670662 GATGCCATGTCCTAGACACTGTTTTACACTGGCTCAT-ATCTCAAGTC
1 GATG-CATGTCCCAGACA-TGTCTTACACTAGCTCATCATCTCAAGCC
* * * **
71670709 GATGCTATGTCCCACACATGGCCTTACACTAACT-ATCATCTTGTAGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCATCATC-TCAAGCC
* * * *
71670757 GATGCATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTC-AAGCC
* * *
71670803 GATGCATGTCCCAGACATGTCTTACACTAGC-CCTCGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAA-GCC
* *
71670849 GATGCCATGTCCCAAAAATGGTCTTACA
1 GATG-CATGTCCCAGACAT-GTCTTACA
71670877 TTTTTCTGAC
Statistics
Matches: 134, Mismatches: 24, Indels: 19
0.76 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 63 0.47
47 52 0.39
48 17 0.13
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAAGCC
Found at i:71675135 original size:40 final size:40
Alignment explanation
Indices: 71675057--71675199 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
71675047 ACCCAAGTAT
*
71675057 CTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
**
71675096 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
71675136 CTTC-GGTACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGT-CTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
71675176 CTTCGGGACTTAGCCTGGGTATAG
1 CTTCGGGTCTTAGCCCGGATATAG
71675200 CAACTTGTGA
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 14 0.15
40 73 0.80
41 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71676950 original size:40 final size:39
Alignment explanation
Indices: 71676839--71676952 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
71676829 GAATGTTCGA
* *
71676839 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
71676878 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* **
71676917 GTGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
71676953 GGTTACCATA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 53 0.77
40 16 0.23
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:71684844 original size:39 final size:39
Alignment explanation
Indices: 71684790--71684933 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
71684780 GAATGTTCGA
71684790 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
71684829 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
71684868 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
71684907 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
71684934 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:71684880 original size:78 final size:79
Alignment explanation
Indices: 71684791--71684973 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
71684781 AATGTTCGAG
71684791 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
71684855 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
71684869 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
71684934 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
71684948 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
71684974 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:71685958 original size:42 final size:42
Alignment explanation
Indices: 71685899--71685978 Score: 160
Period size: 42 Copynumber: 1.9 Consensus size: 42
71685889 CAGAACGGTN
71685899 TTGTCACCGTGTCCATTTATACCCGCACACTTAGTGCCAATC
1 TTGTCACCGTGTCCATTTATACCCGCACACTTAGTGCCAATC
71685941 TTGTCACCGTGTCCATTTATACCCGCACACTTAGTGCC
1 TTGTCACCGTGTCCATTTATACCCGCACACTTAGTGCC
71685979 GAGACCAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.20, C:0.34, G:0.15, T:0.31
Consensus pattern (42 bp):
TTGTCACCGTGTCCATTTATACCCGCACACTTAGTGCCAATC
Found at i:71689406 original size:46 final size:46
Alignment explanation
Indices: 71689339--71689512 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
71689329 TGTAACCCGC
*
71689339 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
71689385 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
71689435 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
71689478 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
71689513 AATGCTCAAC
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:71689459 original size:93 final size:93
Alignment explanation
Indices: 71689347--71689517 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
71689337 GCCCATAAGT
* *
71689347 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71689412 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
*
71689440 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71689505 CGAGTTCGAATGC
66 CGAGTTCGAATGC
71689518 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:71694609 original size:27 final size:27
Alignment explanation
Indices: 71694579--71694892 Score: 378
Period size: 27 Copynumber: 11.6 Consensus size: 27
71694569 TTAGTTTACC
71694579 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
71694606 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71694633 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
71694660 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
71694687 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71694714 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71694741 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71694768 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
71694795 AAATTACCAAAATA-CCTCTGATTTATG
1 AAATTACCAAAATACCCT-TGGTTTGTA
** * *** *
71694822 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * **
71694849 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
71694876 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
71694893 CTGATTTACA
Statistics
Matches: 255, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 250 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:71694997 original size:28 final size:27
Alignment explanation
Indices: 71694950--71695044 Score: 145
Period size: 27 Copynumber: 3.5 Consensus size: 27
71694940 AGCACTATTA
71694950 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
** *
71694977 TAGGGTAGAAATTATTGAAATACCCTTG
1 TAGGGTAG-AATTACCGAAATACCCCTG
*
71695005 TAGGGTAGAAATACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
71695032 TAGGGTAGAATTA
1 TAGGGTAGAATTA
71695045 TCGAGATAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
27 35 0.59
28 24 0.41
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:71695009 original size:55 final size:54
Alignment explanation
Indices: 71694950--71695073 Score: 176
Period size: 55 Copynumber: 2.3 Consensus size: 54
71694940 AGCACTATTA
* *
71694950 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATTATTGAAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG-AATTATCGAAATAACCTTG
* * *
71695005 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCGAGATAACTTTG
1 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATAACCTTG
* *
71695059 TGGGGTAAAATTACC
1 TAGGGTAGAATTACC
71695074 ATTTTGCCCC
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
54 27 0.44
55 34 0.56
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (54 bp):
TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATAACCTTG
Found at i:71695210 original size:21 final size:21
Alignment explanation
Indices: 71695185--71695234 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
71695175 ATATTGTTAT
*
71695185 ACATGATAGGACGTGATATGC
1 ACATGATAGGACATGATATGC
* **
71695206 ACATGATATGTTATGATATGC
1 ACATGATAGGACATGATATGC
71695227 ACATGATA
1 ACATGATA
71695235 TGCTATGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (21 bp):
ACATGATAGGACATGATATGC
Found at i:71695214 original size:11 final size:11
Alignment explanation
Indices: 71695185--71695259 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
71695175 ATATTGTTAT
*
71695185 ACATGATA-GG
1 ACATGATATGC
*
71695195 ACGTGATATGC
1 ACATGATATGC
71695206 ACATGATATG-
1 ACATGATATGC
**
71695216 TTATGATATGC
1 ACATGATATGC
71695227 ACATGATATGC
1 ACATGATATGC
* *
71695238 -TATGATATAC
1 ACATGATATGC
* *
71695248 TCATTATATGC
1 ACATGATATGC
71695259 A
1 A
71695260 TGGGTTGGGT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 23 0.47
11 26 0.53
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:71695235 original size:21 final size:21
Alignment explanation
Indices: 71695198--71695245 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
71695188 TGATAGGACG
*
71695198 TGATATGCACATGATATGTTA
1 TGATATGCACATGATATGCTA
71695219 TGATATGCACATGATATGCTA
1 TGATATGCACATGATATGCTA
71695240 TGATAT
1 TGATAT
71695246 ACTCATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
TGATATGCACATGATATGCTA
Found at i:71695256 original size:21 final size:21
Alignment explanation
Indices: 71695198--71695258 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
71695188 TGATAGGACG
* *
71695198 TGATATGCACATGATATGTTA
1 TGATATACACATGATATGCTA
*
71695219 TGATATGCACATGATATGCTA
1 TGATATACACATGATATGCTA
* *
71695240 TGATATACTCATTATATGC
1 TGATATACACATGATATGC
71695259 ATGGGTTGGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (21 bp):
TGATATACACATGATATGCTA
Found at i:71696749 original size:22 final size:23
Alignment explanation
Indices: 71696724--71696774 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
71696714 TGGGACACAA
*
71696724 CCATAAT-TAGGTTGGCACAGAG
1 CCATAATGTAGGTTGGCACAAAG
*
71696746 CCAT-ATGTAGGTTGGCTCAAAG
1 CCATAATGTAGGTTGGCACAAAG
71696768 CCATAAT
1 CCATAAT
71696775 CAGAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (23 bp):
CCATAATGTAGGTTGGCACAAAG
Found at i:71697290 original size:27 final size:27
Alignment explanation
Indices: 71697260--71697542 Score: 184
Period size: 27 Copynumber: 10.6 Consensus size: 27
71697250 GTAAATCTAT
*
71697260 AAATCAAGGGTATTTCGATAATTTTCC
1 AAATCAAGGGTATTTCGATAATTTTAC
* * * *
71697287 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATCAAGGGTATTTCGATAATTTTAC
*
71697314 AAATCAA-GGTATTT-TAGTAATTTTAC
1 AAATCAAGGGTATTTCGA-TAATTTTAC
* * * * *
71697340 AAGTTAAGGGTATTTTGGTAATTTCAC
1 AAATCAAGGGTATTTCGATAATTTTAC
* * **
71697367 AAATCAGGGGTATTTTGGCAATTTTAC
1 AAATCAAGGGTATTTCGATAATTTTAC
* * *
71697394 AAACCAGGGGTATTT-TAGTAATTTTAC
1 AAATCAAGGGTATTTCGA-TAATTTTAC
* * * *
71697421 AAACCAGGGGTATTTTGGTAATTTT-C
1 AAATCAAGGGTATTTCGATAATTTTAC
* * **
71697447 TAATCAGGGGTATTTTCG-TAATTTTGT
1 AAATCAAGGGTA-TTTCGATAATTTTAC
* **
71697474 AAACCAAGGGTA-TTC-AGTAATTTTGT
1 AAATCAAGGGTATTTCGA-TAATTTTAC
* * **
71697500 AAACCAAGGGTATTTCAATAATTTTGT
1 AAATCAAGGGTATTTCGATAATTTTAC
71697527 AAATCAAGGGTATTTC
1 AAATCAAGGGTATTTC
71697543 AGTAATTCTA
Statistics
Matches: 212, Mismatches: 33, Indels: 22
0.79 0.12 0.08
Matches are distributed among these distances:
25 3 0.01
26 60 0.28
27 148 0.70
28 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCAAGGGTATTTCGATAATTTTAC
Found at i:71697306 original size:54 final size:54
Alignment explanation
Indices: 71697240--71697541 Score: 252
Period size: 53 Copynumber: 5.6 Consensus size: 54
71697230 CACCCTACAA
* * * * * * *
71697240 GGGTGTTTTGGTAAATCTATAAATCAAGGGTATTTCGATAATTTTCCAAATTAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAATCAG
* * *
71697294 GGGTATTTTGGTAATTTTACAAATCAA-GGTATTTT-AGTAATTTTACAAGTTAA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGA-TAATTTTACAAATCAG
* * ** *
71697347 GGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTGGCAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAATCAG
* * * * *
71697401 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT-CTAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAATCAG
* ** * ** ** * *
71697454 GGGTATTTTCGTAATTTTGTAAACCAAGGGTATTCAG-TAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAATCAG
*** **
71697507 GGGTATTTCAATAATTTTGTAAATCAAGGGTATTT
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
71697542 CAGTAATTCT
Statistics
Matches: 207, Mismatches: 37, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
52 8 0.04
53 116 0.56
54 83 0.40
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGATAATTTTACAAATCAG
Found at i:71697349 original size:107 final size:108
Alignment explanation
Indices: 71697238--71697445 Score: 267
Period size: 107 Copynumber: 1.9 Consensus size: 108
71697228 TTCACCCTAC
* * * * **
71697238 AAGGGTGTTTTGGTAAATCT-ATAAATCAAGGGTATTTCGATAATTTTCCAAATTAGGGGTATTT
1 AAGGGTATTTTGGT-AATCTCACAAATCAAGGGTATTTCGACAATTTTACAAACCAGGGGTATTT
* *
71697302 TGGTAATTTTACAAATCA-AGGTATTTTAGTAATTTTACAAGTT
65 TAGTAATTTTACAAACCAGAGGTATTTTAGTAATTTTACAAGTT
* * * *
71697345 AAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTGGCAATTTTACAAACCAGGGGTATTTT
1 AAGGGTATTTTGGTAATCTCACAAATCAAGGGTATTTCGACAATTTTACAAACCAGGGGTATTTT
* *
71697410 AGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT
66 AGTAATTTTACAAACCAGAGGTATTTTAGTAATTTT
71697446 CTAATCAGGG
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
106 4 0.05
107 65 0.76
108 16 0.19
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (108 bp):
AAGGGTATTTTGGTAATCTCACAAATCAAGGGTATTTCGACAATTTTACAAACCAGGGGTATTTT
AGTAATTTTACAAACCAGAGGTATTTTAGTAATTTTACAAGTT
Found at i:71697363 original size:80 final size:80
Alignment explanation
Indices: 71697264--71697541 Score: 301
Period size: 80 Copynumber: 3.5 Consensus size: 80
71697254 ATCTATAAAT
* * * *
71697264 CAAGGGTATTTCGATAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATCAAGGTATTTT
1 CAAGGGTATTTTGGTAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGTATTTT
**
71697329 AGTAATTTTACAAGT
66 AGTAATTTTACAAAC
* * *
71697344 TAAGGGTATTTTGGTAA-TTTCACAAATCAGGGGTATTTTGGCAATTTTACAAACCAGGGGTATT
1 CAAGGGTATTTTGGTAATTTTC-CAAATCAGGGGTATTTTGGTAATTTTACAAACCA-AGGTATT
71697408 TTAGTAATTTTACAAAC
64 TTAGTAATTTTACAAAC
* * * **
71697425 CAGGGGTATTTTGGTAATTTT-CTAATCAGGGGTATTTTCGTAATTTTGTAAACCAAGGGTA-TT
1 CAAGGGTATTTTGGTAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAACCAA-GGTATTT
* **
71697488 CAGTAATTTTGTAAAC
65 TAGTAATTTTACAAAC
*** ** *
71697504 CAAGGGTATTTCAATAATTTTGTAAATCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTCCAAATCAGGGGTATTT
71697542 CAGTAATTCT
Statistics
Matches: 166, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
79 36 0.22
80 91 0.55
81 36 0.22
82 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGTATTTT
AGTAATTTTACAAAC
Found at i:71697570 original size:54 final size:54
Alignment explanation
Indices: 71697451--71697628 Score: 152
Period size: 54 Copynumber: 3.3 Consensus size: 54
71697441 ATTTTCTAAT
* * * *
71697451 CAGGGGTATTTTC-GTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTTGTAAACC-A
1 CAGGGGTA-TTTCAATAATTTTGTAAATCAAGGGTATTTCAGTAA--TTCT-ACCCTA
71697506 -A-GGGTATTTCAATAATTTTGTAAATCAAGGGTATTTCAGTAATTCTACCCTA
1 CAGGGGTATTTCAATAATTTTGTAAATCAAGGGTATTTCAGTAATTCTACCCTA
* * * * ** * *
71697558 CAGGGGCATTTCAGTAATTCTAT-CCTACAGGGGCATTTCAGTAATTCTACCCTA
1 CAGGGGTATTTCAATAATTTTGTAAAT-CAAGGGTATTTCAGTAATTCTACCCTA
*
71697612 CAGGGATATTTCAATAA
1 CAGGGGTATTTCAATAA
71697629 GACTAGCCTA
Statistics
Matches: 102, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
51 3 0.03
52 8 0.08
53 27 0.26
54 64 0.63
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (54 bp):
CAGGGGTATTTCAATAATTTTGTAAATCAAGGGTATTTCAGTAATTCTACCCTA
Found at i:71697639 original size:54 final size:54
Alignment explanation
Indices: 71697538--71697641 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
71697528 AATCAAGGGT
* * ** *
71697538 ATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGACATTTCAATAAGACTAGCCTACAGGGGC
*
71697592 ATTTCAGTAATTCTACCCTACAGGGATATTTCAATAAGACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAGGGACATTTCAATAAGACTAGCCTACAG
71697642 ATATGAGATT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (54 bp):
ATTTCAGTAATTCTACCCTACAGGGACATTTCAATAAGACTAGCCTACAGGGGC
Found at i:71697641 original size:27 final size:27
Alignment explanation
Indices: 71697538--71697616 Score: 149
Period size: 27 Copynumber: 2.9 Consensus size: 27
71697528 AATCAAGGGT
71697538 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
71697565 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
71697592 ATTTCAGTAATTCTACCCTACAGGG
1 ATTTCAGTAATTCTACCCTACAGGG
71697617 ATATTTCAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:71699710 original size:53 final size:54
Alignment explanation
Indices: 71699620--71699834 Score: 231
Period size: 53 Copynumber: 4.0 Consensus size: 54
71699610 GTTGTTAAGA
** *
71699620 CCCCGGTTTGTAAAATTATTGAAATAACCTCAGTTTGTAAAATTATCGAAATAC
1 CCCCGGTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATAC
* * *
71699674 CCCCGGTTTGCAAAATTACCAAAAT-GCCTCAGTTTGTAAAATTACCGAAATAC
1 CCCCGGTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATAC
* ** * * * **
71699727 CTCTAGTTTGTAAACTTACCG-AAT-ACCCCCGATTTGTAAAATTATTGAAATAC
1 CCCCGGTTTGTAAAATTACCGAAATAACCTCAG-TTTGTAAAATTACCGAAATAC
** * *
71699780 CCCCTATTTGTAAAATTATCGAAATAACC-CAGTTTGTAAAATTACCAAAATAC
1 CCCCGGTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATAC
71699833 CC
1 CC
71699835 TTGTAGTGTA
Statistics
Matches: 131, Mismatches: 27, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
52 7 0.05
53 95 0.73
54 26 0.20
55 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (54 bp):
CCCCGGTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATAC
Found at i:71699715 original size:26 final size:27
Alignment explanation
Indices: 71699619--71699862 Score: 189
Period size: 27 Copynumber: 9.2 Consensus size: 27
71699609 GGTTGTTAAG
* **
71699619 ACCCCGGTTTGTAAAATTATTGAAATA
1 ACCCCAGTTTGTAAAATTACCGAAATA
* *
71699646 ACCTCAGTTTGTAAAATTATCGAAATA
1 ACCCCAGTTTGTAAAATTACCGAAATA
* * * *
71699673 CCCCCGGTTTGCAAAATTACCAAAAT-
1 ACCCCAGTTTGTAAAATTACCGAAATA
* *
71699699 GCCTCAGTTTGTAAAATTACCGAAAT-
1 ACCCCAGTTTGTAAAATTACCGAAATA
* *
71699725 ACCTCTAGTTTGTAAACTTACCG-AAT-
1 ACC-CCAGTTTGTAAAATTACCGAAATA
* **
71699751 ACCCCCGATTTGTAAAATTATTGAAATA
1 ACCCCAG-TTTGTAAAATTACCGAAATA
* *
71699779 CCCCCTA-TTTGTAAAATTATCGAAATA
1 ACCCC-AGTTTGTAAAATTACCGAAATA
*
71699806 A-CCCAGTTTGTAAAATTACCAAAAT-
1 ACCCCAGTTTGTAAAATTACCGAAATA
** * *
71699831 ACCCTTGTAGTGTAAAATTACAGAAAT-
1 ACCCCAGT-TTGTAAAATTACCGAAATA
71699858 ACCCC
1 ACCCC
71699863 TGTAGAGTAA
Statistics
Matches: 174, Mismatches: 35, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
25 4 0.02
26 65 0.37
27 101 0.58
28 4 0.02
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
ACCCCAGTTTGTAAAATTACCGAAATA
Found at i:71699845 original size:53 final size:53
Alignment explanation
Indices: 71699625--71699858 Score: 217
Period size: 53 Copynumber: 4.4 Consensus size: 53
71699615 TAAGACCCCG
** * **
71699625 GTTTGTAAAATTATTGAAATAACCTCAGTTTGTAAAATTATCGAAATACCCCCG
1 GTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATA-CCCTA
* * *
71699679 GTTTGCAAAATTACCAAAAT-GCCTCAGTTTGTAAAATTACCGAAATACCTCTA
1 GTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATACC-CTA
* * * **
71699732 GTTTGTAAACTTACCG-AAT-ACCCCCGATTTGTAAAATTATTGAAATACCCCCTA
1 GTTTGTAAAATTACCGAAATAACCTCAG-TTTGTAAAATTACCGAAATA--CCCTA
* * *
71699786 -TTTGTAAAATTATCGAAATAACC-CAGTTTGTAAAATTACCAAAATACCCTT
1 GTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATACCCTA
* *
71699837 GTAGTGTAAAATTACAGAAATA
1 GT-TTGTAAAATTACCGAAATA
71699859 CCCCTGTAGA
Statistics
Matches: 146, Mismatches: 26, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
51 4 0.03
52 10 0.07
53 103 0.71
54 24 0.16
55 5 0.03
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (53 bp):
GTTTGTAAAATTACCGAAATAACCTCAGTTTGTAAAATTACCGAAATACCCTA
Found at i:71699845 original size:80 final size:80
Alignment explanation
Indices: 71699620--71699862 Score: 248
Period size: 80 Copynumber: 3.0 Consensus size: 80
71699610 GTTGTTAAGA
* * *
71699620 CCCCGGTTTGTAAAATTATTGAAATAACCTCAGTTTGTAAAATTATCGAAATACCCCCGGT-TTG
1 CCCCAGTTTGTAAAATTATCGAAATAACCTCAGTTTGTAAAATTA-CCAAATACCCCC-GTATTG
* *
71699684 CAAAATTACCA-AAAT-G
64 TAAAATTA-CAGAAATAC
* * * *
71699700 CCTCAGTTTGTAAAATTACCGAAAT-ACCTCTAGTTTGTAAACTTACCGAATACCCCCG-ATTTG
1 CCCCAGTTTGTAAAATTATCGAAATAACCTC-AGTTTGTAAAATTACCAAATACCCCCGTA-TTG
**
71699763 TAAAATTATTGAAATAC
64 TAAAATTACAGAAATAC
** *
71699780 CCCCTA-TTTGTAAAATTATCGAAATAACC-CAGTTTGTAAAATTACCAAAATACCCTTGTAGTG
1 CCCC-AGTTTGTAAAATTATCGAAATAACCTCAGTTTGTAAAATTACC-AAATACCCCCGTATTG
71699843 TAAAATTACAGAAATAC
64 TAAAATTACAGAAATAC
71699860 CCC
1 CCC
71699863 TGTAGAGTAA
Statistics
Matches: 134, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
78 1 0.01
79 44 0.33
80 84 0.63
81 5 0.04
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (80 bp):
CCCCAGTTTGTAAAATTATCGAAATAACCTCAGTTTGTAAAATTACCAAATACCCCCGTATTGTA
AAATTACAGAAATAC
Found at i:71699845 original size:106 final size:107
Alignment explanation
Indices: 71699653--71699862 Score: 273
Period size: 106 Copynumber: 2.0 Consensus size: 107
71699643 ATAACCTCAG
* *
71699653 TTTGTAAAATTATCGAAATACCCCCGGTTTGCAAAATTACCAAAATGCCTCAGTTTGTAAAATTA
1 TTTGTAAAATTATCGAAATACCCCCGATTTGCAAAATTACCAAAATACCTCAGTTTGTAAAATTA
* * * *
71699718 CCGAAATACCTCTAGTTTGTAAACTTACCG-AATACCCCCGA
66 CCAAAATACCTCTAGTGTGTAAAATTACAGAAATACCCCCGA
* * * * *
71699759 TTTGTAAAATTATTGAAATACCCCCTATTTGTAAAATTATCGAAATAACC-CAGTTTGTAAAATT
1 TTTGTAAAATTATCGAAATACCCCCGATTTGCAAAATTACCAAAAT-ACCTCAGTTTGTAAAATT
*
71699823 ACCAAAATACC-CTTGTAGTGTAAAATTACAGAAATACCCC
65 ACCAAAATACCTCTAGT-GTGTAAAATTACAGAAATACCCC
71699863 TGTAGAGTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
105 4 0.04
106 75 0.84
107 10 0.11
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (107 bp):
TTTGTAAAATTATCGAAATACCCCCGATTTGCAAAATTACCAAAATACCTCAGTTTGTAAAATTA
CCAAAATACCTCTAGTGTGTAAAATTACAGAAATACCCCCGA
Found at i:71700277 original size:22 final size:22
Alignment explanation
Indices: 71700229--71700288 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
71700219 CTTAATCTGT
71700229 TTATGGCTCTGTGCCAGCCTAA
1 TTATGGCTCTGTGCCAGCCTAA
* * * * *
71700251 ATATGGCTCTGTGCTATCTTGA
1 TTATGGCTCTGTGCCAGCCTAA
*
71700273 TTATGGCTTTGTGCCA
1 TTATGGCTCTGTGCCA
71700289 ATTGTATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (22 bp):
TTATGGCTCTGTGCCAGCCTAA
Found at i:71704715 original size:39 final size:39
Alignment explanation
Indices: 71704659--71704828 Score: 250
Period size: 39 Copynumber: 4.4 Consensus size: 39
71704649 ATGTATGAGA
71704659 CTAGAAATATATCCAGACATGAGGTCCGCAGGCTATATG
1 CTAGAAATATATCCAGACATGAGGTCCGCAGGCTATATG
*
71704698 CTAGAAATATATTCAGACATGAGGTCCGCAGGCTATATG
1 CTAGAAATATATCCAGACATGAGGTCCGCAGGCTATATG
* * *
71704737 CTGGAAATATATCCGGACATGAAGTCCGCAGGCTATATG
1 CTAGAAATATATCCAGACATGAGGTCCGCAGGCTATATG
* * * *
71704776 CTAGAAATATATCTAGACTTGAGGTCTGCAGGCTATGTG
1 CTAGAAATATATCCAGACATGAGGTCCGCAGGCTATATG
* *
71704815 CTGGAAAAATATCC
1 CTAGAAATATATCC
71704829 GGGTTAAAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (39 bp):
CTAGAAATATATCCAGACATGAGGTCCGCAGGCTATATG
Found at i:71704846 original size:78 final size:78
Alignment explanation
Indices: 71704684--71704865 Score: 235
Period size: 78 Copynumber: 2.3 Consensus size: 78
71704674 GACATGAGGT
*
71704684 CCGCAGGCTATATGCTAGAAATATATTCAGACATGAGGTCCGCAGGCTATATGCTGGAAATATAT
1 CCGCAGGCTATATGCTAGAAATATATTCAGACATGAGGTCCGCAGGCTATATGCTGGAAAAATAT
* *
71704749 CCGGACATGAAGT
66 CCGGACATAAAGA
* * *
71704762 CCGCAGGCTATATGCTAGAAATATA-TCTAGACTTGAGGTCTGCAGGCTATGTGCTGGAAAAATA
1 CCGCAGGCTATATGCTAGAAATATATTC-AGACATGAGGTCCGCAGGCTATATGCTGGAAAAATA
**
71704826 TCCGG-GTTAAAGA
65 TCCGGACATAAAGA
* *
71704839 CCTGCAGGCT-TATGCTAGTAATGTATT
1 CC-GCAGGCTATATGCTAGAAATATATT
71704866 TCGAGCTCTA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
77 21 0.23
78 70 0.77
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (78 bp):
CCGCAGGCTATATGCTAGAAATATATTCAGACATGAGGTCCGCAGGCTATATGCTGGAAAAATAT
CCGGACATAAAGA
Found at i:71707674 original size:16 final size:16
Alignment explanation
Indices: 71707655--71707685 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71707645 CTTCTTCACT
71707655 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
71707671 TACTTACTTACTTAA
1 TACTCACTTACTTAA
71707686 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:71707691 original size:20 final size:20
Alignment explanation
Indices: 71707652--71707691 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
71707642 AAACTTCTTC
* *
71707652 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
71707672 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
71707692 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:71708121 original size:55 final size:56
Alignment explanation
Indices: 71707940--71708121 Score: 191
Period size: 55 Copynumber: 3.3 Consensus size: 56
71707930 CCATTGTCAT
* *
71707940 GTCTTGACATGGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTTGGCATG
1 GTCTT-ACATGGTATCCTTTGCCTTATAGAAACTTATCAATGCCATGCCTTGGCATG
* * *
71707994 GTCTTACATCGG-A-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTGACATG
1 GTCTTACAT-GGTATCCTTTGCCTTATAGAAACTTATCAATGCCATGCCTTGGCATG
* * * *
71708049 GTCTTACATGATTTCCTTT-CC-T-TAGAAACCTTATCGATTGTCATGCCTTGGCATG
1 GTCTTACATGGTATCCTTTGCCTTATAGAAA-CTTATC-AATGCCATGCCTTGGCATG
71708104 GTCTTACATGGTATCCTT
1 GTCTTACATGGTATCCTT
71708122 AAACCCTAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
52 2 0.02
53 19 0.18
54 16 0.15
55 65 0.61
56 5 0.05
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (56 bp):
GTCTTACATGGTATCCTTTGCCTTATAGAAACTTATCAATGCCATGCCTTGGCATG
Found at i:71725635 original size:68 final size:66
Alignment explanation
Indices: 71725563--71725734 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
71725553 CATCATGTGT
* * * *
71725563 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
71725626 TGTAG
62 TGTAG
** * *
71725631 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
71725696 AG
65 AG
* * * *
71725698 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
71725735 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:71725668 original size:64 final size:64
Alignment explanation
Indices: 71725587--71725770 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
71725577 AGACATTATG
* * *
71725587 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
71725651 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71725716 AA
63 AA
* * *
71725718 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
71725771 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71730032 original size:68 final size:66
Alignment explanation
Indices: 71729960--71730131 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
71729950 CATCATGTGT
* * * *
71729960 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
71730023 TGTAG
62 TGTAG
** * *
71730028 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
71730093 AG
65 AG
* * * *
71730095 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
71730132 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:71730065 original size:64 final size:64
Alignment explanation
Indices: 71729984--71730167 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
71729974 AGACATTATG
* * *
71729984 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
71730048 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71730113 AA
63 AA
* * *
71730115 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
71730168 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71734396 original size:22 final size:22
Alignment explanation
Indices: 71734339--71734406 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 22
71734329 CCTGAGTTGA
*
71734339 TGAACAGTAAGCTCTATTAAGC
1 TGAACAGTAAGCTCTATCAAGC
* * * *
71734361 TTAAAAGGTAAGCTTTATCGAGC
1 TGAACA-GTAAGCTCTATCAAGC
71734384 TGAACAGTAAGCTC-ATACAAGC
1 TGAACAGTAAGCTCTAT-CAAGC
71734406 T
1 T
71734407 AAAAGGGTAA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
21 2 0.06
22 16 0.46
23 17 0.49
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCAAGC
Found at i:71734429 original size:45 final size:45
Alignment explanation
Indices: 71734339--71734444 Score: 119
Period size: 45 Copynumber: 2.3 Consensus size: 45
71734329 CCTGAGTTGA
* **
71734339 TGAACAGTAAGCTCTATTAAGCTTAAAAGGTAAGCTTTATCGAGC
1 TGAACAGTAAGCTCTATCAAGCTTAAAAGGTAAGCTCAATCGAGC
71734384 TGAACAGTAAGCTC-ATACAAGC-TAAAAGGGTAAGCTCCAAT-GAGC
1 TGAACAGTAAGCTCTAT-CAAGCTTAAAA-GGTAAGCT-CAATCGAGC
*
71734429 TGAAATAGTAAGCTCT
1 TG-AACAGTAAGCTCT
71734445 TACGAGTTGA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
44 7 0.13
45 32 0.62
46 13 0.25
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATCAAGCTTAAAAGGTAAGCTCAATCGAGC
Found at i:71739933 original size:80 final size:80
Alignment explanation
Indices: 71739849--71739997 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
71739839 TATGGTAACC
* * * *
71739849 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
71739913 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
71739929 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
71739994 CCGG
66 CCGG
71739998 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:71739939 original size:40 final size:38
Alignment explanation
Indices: 71739890--71739997 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
71739880 ATCACGATTT
*
71739890 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
71739930 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
71739970 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
71739998 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:71745950 original size:41 final size:41
Alignment explanation
Indices: 71745905--71746022 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
71745895 TGAAAGATAA
71745905 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
71745946 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71745976 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71746017 ATGTAG
1 ATGTAG
71746023 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:71745961 original size:71 final size:71
Alignment explanation
Indices: 71745873--71746036 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71745863 GAGATGTATC
71745873 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71745938 AGGACA
66 AGGACA
71745944 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71746009 AGGACA
66 AGGACA
71746015 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71746037 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71753496 original size:41 final size:41
Alignment explanation
Indices: 71753451--71753568 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
71753441 TGAAAGATAA
71753451 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
71753492 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71753522 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
71753563 ATGTAG
1 ATGTAG
71753569 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:71753507 original size:71 final size:71
Alignment explanation
Indices: 71753419--71753582 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71753409 GAGATGTATC
71753419 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71753484 AGGACA
66 AGGACA
71753490 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71753555 AGGACA
66 AGGACA
71753561 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71753583 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71761037 original size:71 final size:69
Alignment explanation
Indices: 71760949--71761110 Score: 306
Period size: 71 Copynumber: 2.3 Consensus size: 69
71760939 GAGATGTATC
71760949 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTG-
71761014 AGGACA
64 AGGACA
71761020 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
71761085 GACA
66 GACA
71761089 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71761111 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 28 0.31
70 23 0.25
71 40 0.44
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
GACA
Found at i:71764054 original size:27 final size:27
Alignment explanation
Indices: 71764011--71764217 Score: 129
Period size: 27 Copynumber: 7.7 Consensus size: 27
71764001 TACCCTATAG
* *
71764011 GGGTATGTCGATCATTTTAAACTACAA
1 GGGTATTTCGATAATTTTAAACTACAA
* * * * *
71764038 TGGTATTTTGGTAATTTTACAGTACAA
1 GGGTATTTCGATAATTTTAAACTACAA
* *
71764065 GGGTATTTCGATAATTTTACAAAT-CAG
1 GGGTATTTCGATAATTTTA-AACTACAA
* * **
71764092 GGGTGTTTC-AGTAATTTTACAAAT-CGG
1 GGGTATTTCGA-TAATTTTA-AACTACAA
* * * * *
71764119 GGGTGTTTTGGTAATTTTACATTACAA
1 GGGTATTTCGATAATTTTAAACTACAA
* *
71764146 GGGTATTTCGATAATTTTACAAAT-C-G
1 GGGTATTTCGATAATTTTA-AACTACAA
* *
71764172 GGGTGTTTCGATAATTTTACAAAT-CAA
1 GGGTATTTCGATAATTTTA-AACTACAA
71764199 GGGTATTTCGATAATTTTA
1 GGGTATTTCGATAATTTTA
71764218 CAAATTGATG
Statistics
Matches: 144, Mismatches: 30, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
26 27 0.19
27 113 0.78
28 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTAAACTACAA
Found at i:71764218 original size:27 final size:27
Alignment explanation
Indices: 71764064--71764617 Score: 461
Period size: 27 Copynumber: 20.7 Consensus size: 27
71764054 TTACAGTACA
71764064 AGGGTATTTCGATAATTTTACAAATC-
1 AGGGTATTTCGATAATTTTACAAATCG
*
71764090 AGGGGTGTTTC-AGTAATTTTACAAATCG
1 A-GGGTATTTCGA-TAATTTTACAAATCG
* * * * * *
71764118 GGGGTGTTTTGGTAATTTTAC-ATTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
71764145 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
71764172 -GGGTGTTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
*
71764198 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
71764225 ATGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
71764252 AGGGTATTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
71764279 AGGGTCTGT-GGTAATTTTAAAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * ** *
71764305 A-GTTATTTTGGCAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
71764331 AGGGTGTTTCGATAATTTCAAAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
71764358 AGGGTATTTAGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
71764385 AGGGTGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
71764412 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
71764439 AAGGTGT-TTTAG-TAATTTCACAAATCG
1 -AGG-GTATTTCGATAATTTTACAAATCG
* *
71764466 GGGGTATTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
71764493 AGAGTATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
71764519 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
71764546 GGGGTACTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
71764573 AGGGTGTTTCGGTAATTTCACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
*
71764599 AGGGGTATTTCGGTAATTT
1 A-GGGTATTTCGATAATTT
71764618 CTCTTTATTA
Statistics
Matches: 429, Mismatches: 78, Indels: 41
0.78 0.14 0.07
Matches are distributed among these distances:
25 6 0.01
26 83 0.19
27 329 0.77
28 9 0.02
29 2 0.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:71764618 original size:107 final size:108
Alignment explanation
Indices: 71764064--71764617 Score: 591
Period size: 107 Copynumber: 5.2 Consensus size: 108
71764054 TTACAGTACA
* * * * * *
71764064 AGGGTATTTCGATAATTTTACAAATC-AGGGGTGTTTCAGTAATTTTACAAATCGGGGGTGTTTT
1 AGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTC
* * * *
71764128 GGTAATTTTAC-ATTACAAGGGTATTTCGATAATTTTACAAATCG
65 GGTAATTTTACAAAT-CGAGGGTATTTCGGTAATTTTACAAATTG
* * * * * *
71764172 -GGGTGTTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATTGATGGTATTTCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTCG
* *
71764236 GTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAATTG
66 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTG
* * * * * * **
71764279 AGGGTCTGT-GGTAATTTTAAAAATCGA-GTTATTTTGGCAATTTTACAAATCAAGGGTGTTTCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTCG
* * * * *
71764342 ATAATTTCAAAAATTGAGGGTATTTAGGTAATTTTACAAATTG
66 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTG
* * * * **
71764385 AGGGTGTTTCAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGAAGGTGTTTTA
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTCG
* * *
71764450 GTAATTTCACAAATCGGGGGTATTTCAGTAATTTTACAAATTG
66 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTG
* * * * * **
71764493 AGAGTATTTCAGTAATTTCAC-AATCGAGGGTATTTTGGTAATTTTACAAATTGGGGGTACTTCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTCG
* *
71764557 GTAATTTTACAAATCGAGGGTGTTTCGGTAATTTCACAAATT-
66 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTG
71764599 AGGGGTATTTCGGTAATTT
1 A-GGGTATTTCGGTAATTT
71764618 CTCTTTATTA
Statistics
Matches: 370, Mismatches: 70, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
106 74 0.20
107 205 0.55
108 91 0.25
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (108 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTGAGGGTGTTTCG
GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTG
Found at i:71764970 original size:28 final size:28
Alignment explanation
Indices: 71764934--71764997 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
71764924 TGGCCCCTTT
* *
71764934 AGGCCCAAT-ATCGTTCACATGGCCTATC
1 AGGCCCAATCA-CATTCACATGGCCCATC
* *
71764962 AGGCCCAATCACATTCATATGGCCCATT
1 AGGCCCAATCACATTCACATGGCCCATC
71764990 AGGCCCAA
1 AGGCCCAA
71764998 CTACTTCCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:71766614 original size:13 final size:13
Alignment explanation
Indices: 71766598--71766622 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71766588 ATAGAATTAA
71766598 ACTTACCATATAG
1 ACTTACCATATAG
71766611 ACTTACCATATA
1 ACTTACCATATA
71766623 ACCACAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
ACTTACCATATAG
Found at i:71769998 original size:77 final size:80
Alignment explanation
Indices: 71769864--71770043 Score: 242
Period size: 77 Copynumber: 2.3 Consensus size: 80
71769854 TCGAATGATG
* * *
71769864 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
71769929 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
71769943 TCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
71770005 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
71770021 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
71770044 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
76 1 0.01
77 42 0.47
78 24 0.27
79 22 0.25
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:71770060 original size:40 final size:39
Alignment explanation
Indices: 71769865--71770046 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
71769855 CGAATGATGT
* * *
71769865 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
71769905 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71769944 CCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71769981 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71770022 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71770047 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
37 15 0.12
38 18 0.14
39 21 0.17
40 61 0.49
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71777197 original size:40 final size:40
Alignment explanation
Indices: 71777009--71777233 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
71776999 TCGAATGATG
* * *
71777009 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
71777049 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71777089 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
71777128 TCCCGGGCTAAG-CCTTAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71777168 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71777209 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71777234 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71777213 original size:79 final size:78
Alignment explanation
Indices: 71777009--71777231 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
71776999 TCGAATGATG
* * *
71777009 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGGGCTAAGA-CCGAAGGCATT
*
71777073 TGTGCGAGTTACTAAA
63 GGTGCGAGTTACTAAA
* * *
71777089 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGCTAAG-CCTTAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-ACCGGGCTAAGACC-GAAGGCAT
71777151 TGGTGCGAGTTACTAAA
62 TGGTGCGAGTTACTAAA
* * *
71777168 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCGGGCTAAG-ACCGAAGGCATT
71777232 TGAACGAGTA
Statistics
Matches: 122, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.02
79 66 0.54
80 42 0.34
81 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGACCGAAGGCATTGGT
GCGAGTTACTAAA
Found at i:71777255 original size:79 final size:78
Alignment explanation
Indices: 71777016--71777256 Score: 242
Period size: 79 Copynumber: 3.0 Consensus size: 78
71777006 ATGTCCGGGC
* * *
71777016 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
71777079 AGTTACTAAATCCGGAC
63 AGTTACTAAATCCGG-T
* ** *
71777096 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGCTAAG-CCTTAAGGCATTGGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCG
71777158 AGTTACTAAATCCGGGT
63 AGTTACTAAATCC-GGT
* **
71777175 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
71777240 -TAGCTATATCCGGT
65 TTA-CTAAATCCGGT
71777254 TAA
1 TAA
71777257 ATTCTGAAGG
Statistics
Matches: 135, Mismatches: 16, Indels: 21
0.78 0.09 0.12
Matches are distributed among these distances:
78 1 0.01
79 73 0.54
80 52 0.39
81 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
TACTAAATCCGGT
Found at i:71779604 original size:29 final size:30
Alignment explanation
Indices: 71779571--71779630 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
71779561 TCCTTAACTC
71779571 AAACTTTTAAAAATTTACAATTTT-CCCCT
1 AAACTTTTAAAAATTTACAATTTTGCCCCT
* * *
71779600 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTTAAAAATTTACAATTTTGCCCCT
71779630 A
1 A
71779631 GCCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.33, C:0.23, G:0.02, T:0.42
Consensus pattern (30 bp):
AAACTTTTAAAAATTTACAATTTTGCCCCT
Found at i:71785522 original size:41 final size:41
Alignment explanation
Indices: 71785465--71785546 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
71785455 ACTTTGGCTC
71785465 ATGATTTGGCATGTTTTGATTGTATATTAAGGATGAAATAA
1 ATGATTTGGCATGTTTTGATTGTATATTAAGGATGAAATAA
71785506 ATGATTTGGCATGTTTTGATTGTATATTAAGGATGAAATAA
1 ATGATTTGGCATGTTTTGATTGTATATTAAGGATGAAATAA
71785547 GTCGATGAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.02, G:0.22, T:0.41
Consensus pattern (41 bp):
ATGATTTGGCATGTTTTGATTGTATATTAAGGATGAAATAA
Found at i:71786921 original size:9 final size:9
Alignment explanation
Indices: 71786909--71786977 Score: 68
Period size: 9 Copynumber: 7.4 Consensus size: 9
71786899 TATTAATTAA
*
71786909 GTTTCATGT
1 GTTTAATGT
*
71786918 GTTTAAAGT
1 GTTTAATGT
*
71786927 ATTTAATGT
1 GTTTAATGT
*
71786936 GTTTAATGA
1 GTTTAATGT
71786945 G-TTAAGTGT
1 GTTTAA-TGT
71786954 GTTTAATGT
1 GTTTAATGT
71786963 GTTTTTAATGT
1 G--TTTAATGT
71786974 GTTT
1 GTTT
71786978 GTTAATGCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
8 4 0.08
9 32 0.65
10 4 0.08
11 9 0.18
ACGTcount: A:0.23, C:0.01, G:0.22, T:0.54
Consensus pattern (9 bp):
GTTTAATGT
Found at i:71786984 original size:12 final size:11
Alignment explanation
Indices: 71786946--71786984 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
71786936 GTTTAATGAG
*
71786946 TTAA-GTGTGT
1 TTAATGTGTTT
71786956 TTAATGTGTTT
1 TTAATGTGTTT
71786967 TTAATGTGTTT
1 TTAATGTGTTT
71786978 GTTAATG
1 -TTAATG
71786985 CTTGTAGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 4 0.15
11 16 0.62
12 6 0.23
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.56
Consensus pattern (11 bp):
TTAATGTGTTT
Found at i:71791167 original size:9 final size:9
Alignment explanation
Indices: 71791136--71791204 Score: 59
Period size: 9 Copynumber: 7.4 Consensus size: 9
71791126 AGTTAATTAA
*
71791136 GTTTCATGT
1 GTTTAATGT
*
71791145 GTTTAAAGT
1 GTTTAATGT
*
71791154 ATTTAATGT
1 GTTTAATGT
*
71791163 GTTTAATGA
1 GTTTAATGT
71791172 G-TTAAGTGT
1 GTTTAA-TGT
71791181 GTTTAATTTGT
1 GTTTAA--TGT
*
71791192 TTTTAATGT
1 GTTTAATGT
71791201 GTTT
1 GTTT
71791205 GTTAATGCTT
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
8 4 0.09
9 31 0.66
10 4 0.09
11 8 0.17
ACGTcount: A:0.23, C:0.01, G:0.20, T:0.55
Consensus pattern (9 bp):
GTTTAATGT
Found at i:71797270 original size:29 final size:27
Alignment explanation
Indices: 71797236--71797338 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
71797226 TACTCAATCA
*
71797236 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
71797265 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
71797294 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
71797323 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
71797339 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:71805065 original size:29 final size:27
Alignment explanation
Indices: 71805031--71805133 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
71805021 TACTCAATCA
*
71805031 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
71805060 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
71805089 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
71805118 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
71805134 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:71812172 original size:40 final size:40
Alignment explanation
Indices: 71812117--71812324 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
71812107 TGAATGATAC
* *
71812117 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
71812157 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATAT
* *
71812197 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *
71812237 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
71812277 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
71812317 CC-GGCTAA
1 CCGGGCTAA
71812325 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 6 0.04
40 142 0.95
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:71814440 original size:29 final size:29
Alignment explanation
Indices: 71814398--71814479 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
71814388 TATTTTTTTT
71814398 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
71814427 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
71814456 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
71814480 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:71822330 original size:29 final size:29
Alignment explanation
Indices: 71822288--71822369 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
71822278 CGTATTTTTT
71822288 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
71822317 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
71822346 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
71822370 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:71830502 original size:66 final size:68
Alignment explanation
Indices: 71830424--71830610 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
71830414 TAGTACCACT
*
71830424 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
71830486 CACG
65 CACG
71830490 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
71830555 ATCACG
63 ATCACG
71830561 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
71830611 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Done.