Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 241 of 328
Found at i:71830535 original size:71 final size:71
Alignment explanation
Indices: 71830447--71830610 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71830437 CGATTTGTCT
71830447 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71830512 CTTTCA
66 CTTTCA
71830518 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71830583 CTTTCA
66 CTTTCA
71830589 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
71830611 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:71830648 original size:71 final size:70
Alignment explanation
Indices: 71830447--71830644 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
71830437 CGATTTGTCT
* * * *
71830447 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71830512 CTTTCA
65 CTTTCA
* * * *
71830518 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71830583 CTTTCA
65 CTTTCA
* *
71830589 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
71830645 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:71834886 original size:27 final size:28
Alignment explanation
Indices: 71834825--71834894 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
71834815 AAATTTGTAC
* *
71834825 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
71834853 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
71834880 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
71834895 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:71834933 original size:55 final size:55
Alignment explanation
Indices: 71834826--71834934 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
71834816 AATTTGTACA
* * * * *
71834826 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
71834881 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
71834935 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:71842960 original size:27 final size:28
Alignment explanation
Indices: 71842899--71842968 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
71842889 AAATTTGTAC
* *
71842899 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
71842927 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
71842954 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
71842969 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:71843007 original size:55 final size:55
Alignment explanation
Indices: 71842900--71843008 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
71842890 AATTTGTACA
* * * * *
71842900 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
71842955 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
71843009 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:71845486 original size:28 final size:28
Alignment explanation
Indices: 71845421--71845521 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71845411 ATAGTGAATC
*
71845421 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
71845450 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
71845478 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
71845508 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71845522 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71852994 original size:28 final size:28
Alignment explanation
Indices: 71852929--71853029 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71852919 ATAGTGAATC
*
71852929 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
71852958 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
71852986 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
71853016 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71853030 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71861651 original size:31 final size:28
Alignment explanation
Indices: 71861613--71861712 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
71861603 GACAAGATTG
* *
71861613 GCACTAAGTGTGCGGGTTTAAAATTTGTATA
1 GCACTAAGTGTGCGAGTTT--AA-TTATATA
*
71861644 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
* * *
71861672 GCACTAAGTGTGCGAGCTGAA-TATATG
1 GCACTAAGTGTGCGAGTTTAATTATATA
71861699 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71861713 TGATCGAGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 19 0.31
28 24 0.39
29 1 0.02
31 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:71861680 original size:28 final size:28
Alignment explanation
Indices: 71861613--71861712 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 28
71861603 GACAAGATTG
* * *
71861613 GCACTAAGTGTGCGGGTTTAAAATTTGTATA
1 GCACTAAGTGTGCGAGTTT--GA-TTATATA
71861644 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* * *
71861672 GCACTAAGTGTGCGAG-CTGAATATATG
1 GCACTAAGTGTGCGAGTTTGATTATATA
71861699 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71861713 TGATCGAGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 1 0.02
31 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71861751 original size:55 final size:55
Alignment explanation
Indices: 71861644--71861752 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
71861634 AATTTGTATA
* * * * *
71861644 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
71861699 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
71861753 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:71863784 original size:43 final size:42
Alignment explanation
Indices: 71863720--71863841 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
71863710 AGTACAGTAC
* *
71863720 CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTAT
1 CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCATAT
* * *
71863762 CAATGCCAATAGCCCAGCTATGGTTTTACACG-AAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATAT
* * *
71863805 CGATGCCATATCCCAAATATGGTCTTAAACGTAATCT
1 CAATGCCATATCCCAGATATGGTCTTACACGTAATCT
71863842 TAGTAACCCT
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCATAT
Found at i:71870650 original size:32 final size:30
Alignment explanation
Indices: 71870574--71870642 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
71870564 GAATGGATTT
* *
71870574 TATATATAT-ATAATTCATCTTAAGGTATA
1 TATATATATAAAAACTCATCTTAAGGTATA
71870603 TATATATATAAAAACTCATCTTAAGGTATA
1 TATATATATAAAAACTCATCTTAAGGTATA
*
71870633 TATTTATATA
1 TATATATATA
71870643 GGTAAACTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 9 0.25
30 27 0.75
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.43
Consensus pattern (30 bp):
TATATATATAAAAACTCATCTTAAGGTATA
Found at i:71874222 original size:6 final size:6
Alignment explanation
Indices: 71874204--71874285 Score: 69
Period size: 6 Copynumber: 13.3 Consensus size: 6
71874194 AAGAAACATT
* *
71874204 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGGA GA-CAGA ATTAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCA-GA -ATCAGA ATCAGA ATCAGA
* * *
71874253 ATCAGT ATCAGGA AACAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-GA ATCAGA ATCAGA ATCAGA AT
71874286 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 2 0.03
6 48 0.80
7 9 0.15
8 1 0.02
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:71874247 original size:31 final size:31
Alignment explanation
Indices: 71874206--71874285 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
71874196 GAAACATTAT
* * *
71874206 CAGAACTAGAATCAGAATTAGAATCAGGAGA
1 CAGAATTAGAATCAGAATCAGAATCAGGAAA
*
71874237 CAGAATTAGAATCAGAATCAGTATCAGGAAA
1 CAGAATTAGAATCAGAATCAGAATCAGGAAA
* *
71874268 CAGAATCAAAATCAGAAT
1 CAGAATTAGAATCAGAAT
71874286 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (31 bp):
CAGAATTAGAATCAGAATCAGAATCAGGAAA
Found at i:71874468 original size:2 final size:2
Alignment explanation
Indices: 71874461--71874500 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
71874451 ACCAGAACAG
71874461 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71874501 GTGGCGAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71874581 original size:27 final size:26
Alignment explanation
Indices: 71874534--71874584 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71874524 CGAGGCTGCT
*
71874534 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
71874560 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
71874585 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:71874859 original size:27 final size:27
Alignment explanation
Indices: 71874829--71874971 Score: 148
Period size: 27 Copynumber: 5.3 Consensus size: 27
71874819 GGGGTAAAAT
* *
71874829 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
71874856 GGTAA-TCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
71874882 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
71874909 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
** *
71874936 AAT-ATTTCTATCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
71874963 GGTAATTTT
1 GGTAATTTT
71874972 GTAAATAGAG
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 24 0.24
27 72 0.72
28 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:71874932 original size:54 final size:53
Alignment explanation
Indices: 71874830--71874968 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 53
71874820 GGGTAAAATG
* * * * *
71874830 GTAATTTTACCCCACAAGGGTATCTCGGTAATCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATCTACCCTACAAGGGTATTTCA
* *
71874883 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATA-ATCTACCCTACAAGGGTATTTCA
* * * *
71874937 ATATTTCTATCCTACAAGGGTATTTCGGTAAT
1 GTAATTCTACCCTACAAGGGTATTTCGATAAT
71874969 TTTGTAAATA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 26 0.36
54 46 0.64
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATCTACCCTACAAGGGTATTTCA
Found at i:71875048 original size:27 final size:28
Alignment explanation
Indices: 71875018--71875244 Score: 146
Period size: 27 Copynumber: 8.4 Consensus size: 28
71875008 GGTACTTTGG
*
71875018 TAATTTTACAAGTCGA-GGGTATTTCAA
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* *
71875045 TAATTTTACAGGTCGA-GGGTATTTTAG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * **
71875072 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * *
71875099 TAATTTTACAA-ACTAGGGGTATTTTGA
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * **
71875126 TAATTTTACAA-ACCAGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * **
71875153 TAATTTTACAA-ACCAGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * **
71875180 TAATTTTACAA-ACCAGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * * * * *
71875207 CAATTTTATAA-ACAAAGGGTATTTTAG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
71875234 TAATTTTACAA
1 TAATTTTACAA
71875245 ACCAGGGTAT
Statistics
Matches: 179, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.01
27 177 0.99
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (28 bp):
TAATTTTACAAGTCGAGGGGTATTTTAA
Found at i:71875122 original size:81 final size:80
Alignment explanation
Indices: 71875007--71875264 Score: 315
Period size: 81 Copynumber: 3.2 Consensus size: 80
71874997 CTGTAAATTA
* * * ** ** *
71875007 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTTA
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACA-AACAAGGGTATTTTA
* *
71875071 GTAATTTCACAAATCAG
64 GTAATTTTACAAACCAG
* *
71875088 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAA-CAAGGGTATTTTAG
71875153 TAATTTTACAAACCAG
65 TAATTTTACAAACCAG
* ** *
71875169 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGCAATTTTATAAACAAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAAC-AAGGGTATTTTAG
71875234 TAATTTTACAAACCA-
65 TAATTTTACAAACCAG
71875249 GGGTA-TTTGGTAATTT
1 GGGTATTTTGGTAATTT
71875265 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
79 11 0.07
80 6 0.04
81 135 0.87
82 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACAAGGGTATTTTAGT
AATTTTACAAACCAG
Found at i:71875246 original size:27 final size:27
Alignment explanation
Indices: 71875061--71875264 Score: 304
Period size: 27 Copynumber: 7.6 Consensus size: 27
71875051 TACAGGTCGA
* * *
71875061 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
71875088 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
71875115 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
71875142 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
71875169 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
71875196 GGGTATTTTGGCAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
71875223 GGGTATTTTAGTAATTTTACAAACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
71875249 GGGTA-TTTGGTAATTT
1 GGGTATTTTGGTAATTT
71875265 GGTAAACTAA
Statistics
Matches: 161, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
25 10 0.06
26 5 0.03
27 146 0.91
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:71877612 original size:17 final size:18
Alignment explanation
Indices: 71877585--71877620 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
71877575 AATCAAATTT
71877585 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
71877603 ATGC-TATTAATTTATTA
1 ATGCATATTAAATTATTA
71877620 A
1 A
71877621 AATAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:71882104 original size:40 final size:39
Alignment explanation
Indices: 71882013--71882163 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
71882003 ATAAGCATGT
* * *
71882013 GCACAAATGCCTTCGGGTCTTAGCCCAGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
71882053 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
71882093 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
71882133 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
71882164 TCATTCAACT
Statistics
Matches: 89, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 83 0.93
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:71890050 original size:25 final size:25
Alignment explanation
Indices: 71890022--71890091 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
71890012 CTCTTTAAAT
* *
71890022 AACTGGGGCAAAGCGCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
71890047 AACTGGGACAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
71890072 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
71890092 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:71895311 original size:17 final size:17
Alignment explanation
Indices: 71895280--71895317 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
71895270 AAAAAAATTC
*
71895280 AAAAAAATTTCGAAAAGA
1 AAAAAAATCTCGAAAA-A
71895298 AAAAAAATCT-GAAAAA
1 AAAAAAATCTCGAAAAA
71895314 AAAA
1 AAAA
71895318 GTGTTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 5 0.26
18 9 0.47
ACGTcount: A:0.74, C:0.05, G:0.08, T:0.13
Consensus pattern (17 bp):
AAAAAAATCTCGAAAAA
Found at i:71896253 original size:6 final size:5
Alignment explanation
Indices: 71896229--71896283 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
71896219 AAGAGAAAAT
*
71896229 AAAGA AAAGA AAAGA AAA-A GCAA-A AAAGAA AAAGA AAAGA AATA-A
1 AAAGA AAAGA AAAGA AAAGA -AAAGA AAAG-A AAAGA AAAGA AA-AGA
71896274 AAAGA AAAGA
1 AAAGA AAAGA
71896284 GAGGCAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
4 4 0.09
5 33 0.77
6 6 0.14
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:71896275 original size:15 final size:15
Alignment explanation
Indices: 71896229--71896283 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
71896219 AAGAGAAAAT
71896229 AAAGAAAAGAAAAGAA
1 AAAGAAAAG-AAAGAA
*
71896245 AAAGCAAA-AAAGAA
1 AAAGAAAAGAAAGAA
*
71896259 AAAGAAAAGAAATAA
1 AAAGAAAAGAAAGAA
71896274 AAAGAAAAGA
1 AAAGAAAAGA
71896284 GAGGCAAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.37
15 15 0.43
16 7 0.20
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (15 bp):
AAAGAAAAGAAAGAA
Found at i:71896386 original size:30 final size:31
Alignment explanation
Indices: 71896352--71896433 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
71896342 TTTGAAAAGC
*
71896352 AAAAAGAAAAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* * *
71896382 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* *
71896412 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAAAGAAAAAGAAAT
71896434 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
Found at i:71896406 original size:24 final size:24
Alignment explanation
Indices: 71896357--71896426 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
71896347 AAAGCAAAAA
*
71896357 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAATGAAATT
* *
71896381 GAAAAAGAGAACGAAAA-GAAATTT
1 GAAAAAGAAAAAGAAAATGAAA-TT
* ** *
71896405 GAGAGTGAAAAAGAAGATGAAA
1 GAAAAAGAAAAAGAAAATGAAA
71896427 AAGAAATTGA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
23 3 0.09
24 28 0.80
25 4 0.11
ACGTcount: A:0.63, C:0.01, G:0.24, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAATGAAATT
Found at i:71898636 original size:30 final size:30
Alignment explanation
Indices: 71898541--71898637 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
71898531 AGCTCACTCC
* *
71898541 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * * **
71898571 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
* *
71898601 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
71898631 TAGCTCA
1 TAGCTCA
71898638 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 2 0.04
30 40 0.82
31 7 0.14
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:71900330 original size:11 final size:11
Alignment explanation
Indices: 71900314--71900350 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
71900304 ATACAAGTCA
71900314 AAAAAAATTCG
1 AAAAAAATTCG
71900325 AAAAAAATTC-
1 AAAAAAATTCG
71900335 AAAAAAATTTCG
1 AAAAAAA-TTCG
71900347 AAAA
1 AAAA
71900351 GAAAAAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 7 0.29
11 13 0.54
12 4 0.17
ACGTcount: A:0.68, C:0.08, G:0.05, T:0.19
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:71901307 original size:6 final size:5
Alignment explanation
Indices: 71901283--71901338 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
71901273 AAGAGAAAAT
*
71901283 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAAGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAAGA AA-AGA
71901329 AAAGA AAAGA
1 AAAGA AAAGA
71901339 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 11 0.25
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:71901481 original size:30 final size:31
Alignment explanation
Indices: 71901407--71901488 Score: 91
Period size: 30 Copynumber: 2.7 Consensus size: 31
71901397 TTTGAAAAGC
* * *
71901407 AAAAAGA-AAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAGAACGAAAAAGAAATTTGAGAGTG
71901436 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAGAACGAAAAAGAAATTTGAGAGTG
*
71901466 AAAAAGA-AGATGAAAAAGAAATT
1 AAAAAGAGA-ACGAAAAAGAAATT
71901489 GAAACAAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 16 0.36
30 19 0.42
31 10 0.22
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAGAACGAAAAAGAAATTTGAGAGTG
Found at i:71909749 original size:25 final size:25
Alignment explanation
Indices: 71909714--71909790 Score: 111
Period size: 25 Copynumber: 3.1 Consensus size: 25
71909704 GCCTAGCCTC
*
71909714 TTTTAAT-AACTGGAGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
71909738 TTTTAATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
***
71909763 TTTCGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
71909788 TTT
1 TTT
71909791 GAACTTCATC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
24 7 0.15
25 41 0.85
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:71909849 original size:10 final size:10
Alignment explanation
Indices: 71909836--71909874 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
71909826 ATATATGAAT
71909836 ATATCATGGC
1 ATATCATGGC
71909846 ATATCATGTGC
1 ATATCATG-GC
71909857 ATATCATGGC
1 ATATCATGGC
71909867 ATATCATG
1 ATATCATG
71909875 TATAAAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:71909862 original size:21 final size:21
Alignment explanation
Indices: 71909836--71909875 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
71909826 ATATATGAAT
71909836 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
71909857 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
71909876 ATAAAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:71912400 original size:80 final size:80
Alignment explanation
Indices: 71912267--71912452 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 80
71912257 ATTGAATGAT
* * * * *
71912267 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGC-AT
* *
71912332 T-GTGCTAGTGGCTAC
65 TCGTGCAAGTGGCTAA
* *
71912347 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATTCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
* *
71912412 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGCTAA
*
71912427 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGTCCCG-AGGACATTT
71912453 GTGCAAATCG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 3 0.03
80 86 0.93
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGCTAA
Found at i:71912457 original size:40 final size:40
Alignment explanation
Indices: 71912307--71912458 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
71912297 TGGAAATTAT
* * * * * *
71912307 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
* * * * *
71912347 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAGTTAA
* * *
71912387 ATTCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
71912427 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
71912459 ATCGTGATAT
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
39 3 0.03
40 86 0.93
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
Found at i:71912469 original size:80 final size:80
Alignment explanation
Indices: 71912305--71912488 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
71912295 GCTGGAAATT
* * * *
71912305 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATTCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
71912370 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* * *
71912385 ATATTCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATTCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* **
71912448 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAATG
* *
71912465 ATATTCGGGTTAAGTCCCGTAGGC
1 ATATTCGGGTTAAGACCCGAAGGC
71912489 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 80 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATTCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:71918320 original size:32 final size:32
Alignment explanation
Indices: 71918278--71918504 Score: 192
Period size: 33 Copynumber: 7.0 Consensus size: 32
71918268 AAATGGTACA
* *
71918278 ACTTGAAAAGGTTATGTAAACTTTGTGTGTAT
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAT
*
71918310 ACTTGTAAAGGTTAGGTATAC-TT-TGTGTAT
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAT
** * * *
71918340 ACCATATGAAAAGGAAACGTACACTTTGTGTGTAC
1 A-C-T-TGAAAAGGTTAGGTATACTTTGTGTGTAT
*
71918375 ACTTGGAAAGGTTAGGTATAC-TT-TGTGTAT
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAT
** *
71918405 ACCATATGAAAAGGAAAGGTATACTTTGTGTGTAC
1 A-C-T-TGAAAAGGTTAGGTATACTTTGTGTGTAT
* *
71918440 ACTTGGAAAAGGTTAGGTATACTTTGTGTATACC
1 ACTT-GAAAAGGTTAGGTATACTTTGTGTGTA-T
** **
71918474 AAATGAAAAGGAAAGGTATACTTTGTGTGTA
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTA
71918505 CCACTTGGAA
Statistics
Matches: 156, Mismatches: 27, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
30 15 0.10
31 6 0.04
32 34 0.22
33 78 0.50
34 9 0.06
35 14 0.09
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.34
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTATACTTTGTGTGTAT
Found at i:71918366 original size:33 final size:33
Alignment explanation
Indices: 71918323--71918507 Score: 216
Period size: 33 Copynumber: 5.6 Consensus size: 33
71918313 TGTAAAGGTT
71918323 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
* * * * **
71918356 ACGTACACTTTGTGTGTA-CACT-TGGAAAGGTT
1 AGGTATACTTTGTGTATACCA-TATGAAAAGGAA
71918388 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
* **
71918421 AGGTATACTTTGTGTGTA-CACT-TGGAAAAGGTT
1 AGGTATACTTTGTGTATACCA-TAT-GAAAAGGAA
*
71918454 AGGTATACTTTGTGTATACCAAATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
*
71918487 AGGTATACTTTGTGTGTACCA
1 AGGTATACTTTGTGTATACCA
71918508 CTTGGAAGGA
Statistics
Matches: 125, Mismatches: 20, Indels: 14
0.79 0.13 0.09
Matches are distributed among these distances:
32 28 0.22
33 94 0.75
34 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGAA
Found at i:71918486 original size:66 final size:66
Alignment explanation
Indices: 71918297--71918514 Score: 368
Period size: 65 Copynumber: 3.3 Consensus size: 66
71918287 GGTTATGTAA
* * *
71918297 ACTTTGTGTGTATACTT-GTAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAACGTA
1 ACTTTGTGTGTACACTTGGAAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
*
71918361 C
66 T
71918362 ACTTTGTGTGTACACTTGG-AAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
1 ACTTTGTGTGTACACTTGGAAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
71918426 T
66 T
*
71918427 ACTTTGTGTGTACACTTGGAAAAGGTTAGGTATACTTTGTGTATACCAAATGAAAAGGAAAGGTA
1 ACTTTGTGTGTACACTTGGAAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
71918492 T
66 T
71918493 ACTTTGTGTGTACCACTTGGAA
1 ACTTTGTGTGTA-CACTTGGAA
71918515 GGAATGTACA
Statistics
Matches: 146, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
65 79 0.54
66 58 0.40
67 9 0.06
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (66 bp):
ACTTTGTGTGTACACTTGGAAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTA
T
Found at i:71923436 original size:42 final size:42
Alignment explanation
Indices: 71923315--71923436 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
71923305 TACCGTACCA
* *
71923315 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATCG
* * *
71923357 ATGCCAATAGCCCAGTTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACACGTAA-TCTCATATCG
**
71923400 ATGCCATATCCTAGATATAATCTTACACGTAATCTCA
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
71923437 ATAACCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATATCG
Found at i:71925043 original size:38 final size:38
Alignment explanation
Indices: 71924982--71925054 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
71924972 AAACTTGTTC
** * * *
71924982 TTACATGATGTGGAAATTTTGAAAATTAAAATATAAAA
1 TTACATGATGCAGAAAATATGAAAATGAAAATATAAAA
71925020 TTACATGATGCAGAAAATATGAAAATGAAAATATA
1 TTACATGATGCAGAAAATATGAAAATGAAAATATA
71925055 TCAAATTTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.52, C:0.04, G:0.14, T:0.30
Consensus pattern (38 bp):
TTACATGATGCAGAAAATATGAAAATGAAAATATAAAA
Found at i:71925209 original size:23 final size:22
Alignment explanation
Indices: 71925179--71925224 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
71925169 TTAAAAATGT
*
71925179 TTATATTGTACATTATAAAAAA
1 TTATATTGTACATAATAAAAAA
* *
71925201 TTATAATTGTTCATAATTAAAAA
1 TTAT-ATTGTACATAATAAAAAA
71925224 T
1 T
71925225 AGCTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (22 bp):
TTATATTGTACATAATAAAAAA
Found at i:71926743 original size:38 final size:38
Alignment explanation
Indices: 71926692--71926764 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
71926682 ACAAATTTGA
* * * **
71926692 TATATTTTCATTTTCATATTTTCTGCATCATGTAATTT
1 TATATTTTAATTTTCAAAATTTCCACATCATGTAATTT
71926730 TATATTTTAATTTTCAAAATTTCCACATCATGTAA
1 TATATTTTAATTTTCAAAATTTCCACATCATGTAA
71926765 GAACAAGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.30, C:0.14, G:0.04, T:0.52
Consensus pattern (38 bp):
TATATTTTAATTTTCAAAATTTCCACATCATGTAATTT
Found at i:71928693 original size:31 final size:31
Alignment explanation
Indices: 71928655--71928717 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
71928645 TTTTTCATAC
71928655 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
71928686 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
71928717 T
1 T
71928718 ATTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:71928986 original size:47 final size:48
Alignment explanation
Indices: 71928923--71929051 Score: 188
Period size: 47 Copynumber: 2.7 Consensus size: 48
71928913 CTGGAGGCCT
* * *
71928923 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTATAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
*
71928972 AGCCC-TATAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTATAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
* *
71929019 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTATAATAACTGGGGCATAAGCCCTTTT
71929052 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 43 0.59
48 26 0.36
49 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
AGCCCTTATAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATA
Found at i:71929052 original size:24 final size:24
Alignment explanation
Indices: 71928923--71929051 Score: 197
Period size: 24 Copynumber: 5.4 Consensus size: 24
71928913 CTGGAGGCCT
*
71928923 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
71928948 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
71928972 AGCCC-TATAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
71928995 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
71929019 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
71929043 AGCCCTTTT
1 AGCCCTTTT
71929052 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
23 22 0.23
24 71 0.73
25 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:71929126 original size:20 final size:20
Alignment explanation
Indices: 71929101--71929167 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
71929091 TTATGAATAC
71929101 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71929121 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
71929141 CTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71929161 ACCATGT
1 ATCATGT
71929168 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71933128 original size:46 final size:46
Alignment explanation
Indices: 71932982--71933295 Score: 212
Period size: 46 Copynumber: 6.7 Consensus size: 46
71932972 ATTGTGTGCT
** **
71932982 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGATGAGAGCC
* *
71933028 AGTGTAAGACGATGTCTGGGACATGGCATCGGCATTAAGATGAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTTAAGATGAGAGCC
* *
71933076 AGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGATG-AGAGCC
* * * * * *
71933122 AATGTAAGACATGTTTGGGACATGCATTGG-CTACAAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-TAAGATGAGAGCC
* * * * * **
71933166 AGTGTAAGGCCATGCCTGGGACATGGCTTCGGCATGGATATG-TGAGAGTT
1 AGTGTAA-GACATGTCTGGGACAT-GCATCGGCCT---TAAGATGAGAGCC
* * *
71933216 AGTGTAAGACCATGTCTGGGACATGGCAT-TGACTT-A-ATGGATGAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTAAGAT-GA-GAGCC
*
71933263 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
71933296 ATTATACCCT
Statistics
Matches: 211, Mismatches: 40, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
44 8 0.04
45 16 0.08
46 66 0.31
47 59 0.28
48 29 0.14
49 6 0.03
50 27 0.13
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGATGAGAGCC
Found at i:71933276 original size:97 final size:93
Alignment explanation
Indices: 71932982--71933297 Score: 290
Period size: 94 Copynumber: 3.4 Consensus size: 93
71932972 ATTGTGTGCT
* * *
71932982 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATTATG-AGAGCCAGTGTAAGACGATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATGGA-GATGTA-AGCCAGTGTAAGACCATG
* *
71933042 TCTGGGACATGGCATCGGCATTAAGATGAGAGC
63 TCTGGGACATGGCATTGGC-TTAAGATGAG-TC
* * * * *
71933075 TAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTTGAGATGTAAGCCAATGTAAGA-CATGTT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGAGATGTAAGCCAGTGTAAGACCATGTC
* *
71933137 TGGGACAT-GCATTGGCTACAAGATGTGTC
65 TGGGACATGGCATTGGCT-TAAGATGAGTC
* * * * **
71933166 AGTGTAAGGCCATGCCTGGGACATGGCTTCGGCATGGATATGTGAGAGTTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGAGATGT-A-AGCCAGTGTAAGACCATGT
*
71933231 CTGGGACATGGCATTGACTTAATGGATGAGTC
64 CTGGGACATGGCATTGGCTTAA--GATGAGTC
*
71933263 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
71933298 TATACCCTGT
Statistics
Matches: 181, Mismatches: 29, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
90 8 0.04
91 14 0.08
92 28 0.15
93 14 0.08
94 54 0.30
95 17 0.09
96 8 0.04
97 38 0.21
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGAGATGTAAGCCAGTGTAAGACCATGTCT
GGGACATGGCATTGGCTTAAGATGAGTC
Found at i:71933283 original size:47 final size:48
Alignment explanation
Indices: 71932982--71933291 Score: 188
Period size: 47 Copynumber: 6.6 Consensus size: 48
71932972 ATTGTGTGCT
* * * *
71932982 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAT-TATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCTTACATGGAT--GAGTC
* * *
71933028 AGTGTAAGACGATGTCTGGGACATGGCATCGGCATTA-A--GATGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGC-TTACATGGATGAG-TC
* * * * *
71933075 TAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTTGAGAT-G-TAAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATTGG-CTT-ACATGGATGAGTC
* * * *
71933122 AATGTAAGA-CATGTTTGGGACAT-GCATTGGC-TACA-AGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCTTACATGGATGAGTC
* * * * *
71933166 AGTGTAAGGCCATGCCTGGGACATGGC-TTCGGCATGGATATGTGA-GAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATT-GGC-T-TACATG-GATGAGTC
*
71933216 AGTGTAAGACCATGTCTGGGACATGGCATTGACTTA-ATGGATGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCTTACATGGATGAGTC
*
71933263 AGTGTAAGACCATGTTTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
71933292 CGGCATTATA
Statistics
Matches: 211, Mismatches: 31, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
43 3 0.01
44 11 0.05
45 15 0.07
46 54 0.26
47 64 0.30
48 24 0.11
49 5 0.02
50 31 0.15
51 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCTTACATGGATGAGTC
Found at i:71948592 original size:27 final size:29
Alignment explanation
Indices: 71948535--71948592 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
71948525 CAATAAACGT
*
71948535 TGTTGAATTTGAATGTGTATGATTTTATA
1 TGTTGAATTTGAATGTGTATGAATTTATA
*
71948564 TGTTGAATTT-AAT-TGTATGAATTTCTA
1 TGTTGAATTTGAATGTGTATGAATTTATA
71948591 TG
1 TG
71948593 GTTATAGCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 14 0.52
28 3 0.11
29 10 0.37
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.52
Consensus pattern (29 bp):
TGTTGAATTTGAATGTGTATGAATTTATA
Found at i:71948736 original size:42 final size:42
Alignment explanation
Indices: 71948689--71948809 Score: 174
Period size: 41 Copynumber: 2.9 Consensus size: 42
71948679 TAACAGTGAT
71948689 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
1 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATTG
*
71948731 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCTGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTG
* * * *
71948773 A-ATCAGGTTTATTACCTAGCAGGCTCTATGCCAGTGT
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGT
71948810 TTTATACAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 41 0.57
42 31 0.43
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (42 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTG
Found at i:71952024 original size:30 final size:30
Alignment explanation
Indices: 71951990--71952090 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 30
71951980 GACCTGAATG
71951990 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
* * *
71952020 CATG-TT-ATTATTATCTGATAAGGTTGACCTGAATG-
1 CATGTTTGACTGTTA-CT-AT----TT-A-CTGCATGC
71952055 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
71952085 CATGTT
1 CATGTT
71952091 ATTATTATCT
Statistics
Matches: 54, Mismatches: 6, Indels: 22
0.66 0.07 0.27
Matches are distributed among these distances:
28 5 0.09
29 10 0.19
30 13 0.24
31 2 0.04
34 2 0.04
35 7 0.13
36 10 0.19
37 5 0.09
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (30 bp):
CATGTTTGACTGTTACTATTTACTGCATGC
Found at i:71952077 original size:65 final size:65
Alignment explanation
Indices: 71951973--71952103 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
71951963 CCCCTAGGGT
71951973 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
71952038 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
71952103 T
1 T
71952104 GCATGGGACT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:71953744 original size:47 final size:46
Alignment explanation
Indices: 71953672--71953800 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 46
71953662 TTAATTATGT
* *
71953672 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATT-ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACGAGA
71953718 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT--GACGAGA
*
71953766 GCTAGTGTAAGATATGTCTGGGACATGCATCGGCC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
71953801 TCGAGATGTA
Statistics
Matches: 73, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
45 4 0.05
46 18 0.25
47 27 0.37
48 24 0.33
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACGAGA
Found at i:71953819 original size:46 final size:46
Alignment explanation
Indices: 71953672--71953828 Score: 192
Period size: 46 Copynumber: 3.4 Consensus size: 46
71953662 TTAATTATGT
* * *
71953672 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * *
71953718 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
*
71953766 GCTAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
*
71953812 GCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGT
71953829 TTCGGACTTG
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
46 41 0.43
47 28 0.29
48 25 0.26
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:71955031 original size:33 final size:33
Alignment explanation
Indices: 71954989--71955054 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
71954979 TAGACATGTT
71954989 TTGTTGGTGCATTATGGAAAAAAAATAAACTAA
1 TTGTTGGTGCATTATGGAAAAAAAATAAACTAA
71955022 TTGTTGGTGCATTATGGAAAAAAAATAAACTAA
1 TTGTTGGTGCATTATGGAAAAAAAATAAACTAA
71955055 GGTTAGAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (33 bp):
TTGTTGGTGCATTATGGAAAAAAAATAAACTAA
Found at i:71957671 original size:29 final size:29
Alignment explanation
Indices: 71957643--71957745 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
71957633 CCTCCGAGCT
** * * *
71957643 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
71957672 TGCACACTTAGTGCTATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
71957701 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
71957730 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71957746 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:71957685 original size:58 final size:58
Alignment explanation
Indices: 71957614--71957745 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 58
71957604 AATTTAAGCC
** * * * * *
71957614 CGCACACACAGTGCCATA-CCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATACCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCA
* * ** **
71957672 TGCACACTTAGTGCTATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
71957730 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71957746 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
58 55 0.95
59 3 0.05
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:71959629 original size:40 final size:39
Alignment explanation
Indices: 71959546--71959657 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 39
71959536 TCAAATGATG
* *
71959546 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTGACCAAA
* **
71959586 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTGACCAAA
*
71959626 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAG
71959658 CTATTATAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 51 0.82
41 10 0.16
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:71959671 original size:40 final size:40
Alignment explanation
Indices: 71959546--71959697 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
71959536 TCAAATGATG
* * *
71959546 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
71959586 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
71959626 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * * *
71959667 -CCGGGCTATGTCCCAAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
71959698 TCGCTATATC
Statistics
Matches: 91, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
39 1 0.01
40 79 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:71964960 original size:71 final size:71
Alignment explanation
Indices: 71964876--71965037 Score: 324
Period size: 71 Copynumber: 2.3 Consensus size: 71
71964866 ATTTGTCTCA
71964876 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
1 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
71964941 TTCACG
66 TTCACG
71964947 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
1 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
71965012 TTCACG
66 TTCACG
71965018 TAGCTCTCTTGTCTACATGG
1 TAGCTCTCTTGTCTACATGG
71965038 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
TTCACG
Found at i:71965075 original size:71 final size:70
Alignment explanation
Indices: 71964876--71965071 Score: 254
Period size: 71 Copynumber: 2.8 Consensus size: 70
71964866 ATTTGTCTCA
* * * *
71964876 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
1 TAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTATCT
71964941 TTCACG
65 TTCACG
* * * *
71964947 TAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATCT
1 TAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTATCT
71965012 TTCACG
65 TTCACG
* *
71965018 TAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 TAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
71965072 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
TAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATCTT
TCACG
Found at i:71969953 original size:40 final size:40
Alignment explanation
Indices: 71969870--71970022 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
71969860 TCGAATGATG
* *
71969870 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
71969910 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
71969950 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
71969991 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
71970023 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:71980249 original size:40 final size:40
Alignment explanation
Indices: 71980127--71980275 Score: 135
Period size: 40 Copynumber: 3.7 Consensus size: 40
71980117 AATGATGTCT
* *
71980127 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAATCC
* * *
71980167 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAATCC
* **
71980207 GGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AATCC
* * *
71980247 GGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG
71980276 TCGCTATATC
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 78 0.87
41 11 0.12
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAATCC
Found at i:71983014 original size:11 final size:11
Alignment explanation
Indices: 71982998--71983027 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
71982988 AGAACTTAAG
71982998 AAAATTTTTGA
1 AAAATTTTTGA
71983009 AAAATTTTTGA
1 AAAATTTTTGA
71983020 AAAATTTT
1 AAAATTTT
71983028 CATGTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (11 bp):
AAAATTTTTGA
Found at i:71984779 original size:20 final size:20
Alignment explanation
Indices: 71984738--71984779 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
71984728 ATGCTATCAT
*
71984738 CAGATGGGTCAGAAACGATA
1 CAGATGGGTCAGAAACAATA
*
71984758 CAGAT-GGTCATAAACAAGTA
1 CAGATGGGTCAGAAACAA-TA
71984778 CA
1 CA
71984780 ATGCCGACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.17
Consensus pattern (20 bp):
CAGATGGGTCAGAAACAATA
Found at i:71988348 original size:24 final size:23
Alignment explanation
Indices: 71988295--71988349 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
71988285 GCATGCTCAG
* *
71988295 ATTCATCACGTGAATAAATCAAA
1 ATTCATCACATGAATAAATAAAA
71988318 ATATCATCA-ATGAATACAATAACAA
1 AT-TCATCACATGAATA-AATAA-AA
71988343 ATTCATC
1 ATTCATC
71988350 TAGATACGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 8 0.30
24 15 0.56
25 4 0.15
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.27
Consensus pattern (23 bp):
ATTCATCACATGAATAAATAAAA
Found at i:71995148 original size:26 final size:25
Alignment explanation
Indices: 71995099--71995150 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
71995089 TAATGAATTG
71995099 ATATTTTTTTAAATAGTTTATTGAT
1 ATATTTTTTTAAATAGTTTATTGAT
*
71995124 ATATTTATTATTATATAG-TTATTGAT
1 ATATTT-TT-TTAAATAGTTTATTGAT
71995150 A
1 A
71995151 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 11 0.46
27 7 0.29
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (25 bp):
ATATTTTTTTAAATAGTTTATTGAT
Found at i:71997882 original size:38 final size:38
Alignment explanation
Indices: 71997840--71997994 Score: 204
Period size: 38 Copynumber: 4.1 Consensus size: 38
71997830 GGCTTAAAGA
* * *
71997840 CCCGCAGGCTATATGCTGG-AATTATATACGGGTTAAAT
1 CCCGCAAGCTTTATGCTGGTAA-TATATCCGGGTTAAAT
* * *
71997878 CCCGCAGGCTTTGTGCTGGTAATATATCCGAGTTAAAT
1 CCCGCAAGCTTTATGCTGGTAATATATCCGGGTTAAAT
* *
71997916 CCTGCAAGCTTTGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAAGCTTTATGCTGGTAATATATCCGGGTTAAAT
* *
71997954 CCCGCAAGCTTCATGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAAGCTTTATGCTGGTAATATATCCGGGTTAAAT
71997992 CCC
1 CCC
71997995 ATAGGCCTAG
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 103 0.98
39 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (38 bp):
CCCGCAAGCTTTATGCTGGTAATATATCCGGGTTAAAT
Found at i:71998008 original size:76 final size:75
Alignment explanation
Indices: 71997853--71998019 Score: 194
Period size: 76 Copynumber: 2.2 Consensus size: 75
71997843 GCAGGCTATA
* * **
71997853 TGCTGG-AATTATATACGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGAGTTAAATC
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAAGCTTCATGCTGGTAATATATCCGAGTTAAATC
* *
71997917 CTGCAAGCTTTG
65 C-GCAAGCCTAG
* *
71997929 TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTCATGCTGGTATTATATCCGGGTTAAATCC
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTCATGCTGGTAATATATCCGAGTTAAATCC
71997994 -CATAGGCCTAG
66 GCA-A-GCCTAG
* *
71998005 TGCTAGTATTATATC
1 TGCTGGTAATATATC
71998020 TGAGTTTAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
74 2 0.03
75 1 0.01
76 73 0.94
77 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (75 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTCATGCTGGTAATATATCCGAGTTAAATCC
GCAAGCCTAG
Found at i:71998014 original size:38 final size:38
Alignment explanation
Indices: 71997844--71998019 Score: 176
Period size: 38 Copynumber: 4.6 Consensus size: 38
71997834 TAAAGACCCG
* * *
71997844 CAGGCTATA-TGCTGGAATTATATACGGGTTAAATCCCG
1 CAGGCT-TAGTGCTGGTATTATATCCGGGTTAAATCCCA
* * * **
71997882 CAGGCTTTGTGCTGGTAATATATCCGAGTTAAATCCTG
1 CAGGCTTAGTGCTGGTATTATATCCGGGTTAAATCCCA
* * * *
71997920 CAAGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCG
1 CAGGCTTAGTGCTGGTATTATATCCGGGTTAAATCCCA
*
71997958 CAAGCTTCA-TGCTGGTATTATATCCGGGTTAAATCCCA
1 CAGGCTT-AGTGCTGGTATTATATCCGGGTTAAATCCCA
* * *
71997996 TAGGCCTAGTGCTAGTATTATATC
1 CAGGCTTAGTGCTGGTATTATATC
71998020 TGAGTTTAAA
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
37 2 0.02
38 117 0.98
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (38 bp):
CAGGCTTAGTGCTGGTATTATATCCGGGTTAAATCCCA
Found at i:71998048 original size:40 final size:38
Alignment explanation
Indices: 71997860--71998048 Score: 139
Period size: 38 Copynumber: 4.9 Consensus size: 38
71997850 ATATGCTGGA
* ** * *
71997860 ATTATATACGGGTTAAATCCCGCAGGCTTTGTGCTGGT
1 ATTATATCCGGGTTAAATCCCATAGGCTTCGTGCTAGT
* * * *
71997898 AATATATCCGAGTTAAATCCTGCA-A-GCTTTGTGCTGGT
1 ATTATATCCGGGTTAAATCC--CATAGGCTTCGTGCTAGT
* ** * * *
71997936 AATATATCCGGGTTAAATCCCGCAAGCTTCATGCTGGT
1 ATTATATCCGGGTTAAATCCCATAGGCTTCGTGCTAGT
* *
71997974 ATTATATCCGGGTTAAATCCCATAGGCCTAGTGCTAGT
1 ATTATATCCGGGTTAAATCCCATAGGCTTCGTGCTAGT
* * * *
71998012 ATTATATCTGAGTTTAAAGTCTCGTAGGCTTCGTGCT
1 ATTATATCCG-GGTTAAA-TCCCATAGGCTTCGTGCT
71998049 GGTGTTATGT
Statistics
Matches: 123, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
36 1 0.01
37 1 0.01
38 99 0.80
39 7 0.06
40 15 0.12
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (38 bp):
ATTATATCCGGGTTAAATCCCATAGGCTTCGTGCTAGT
Found at i:71999930 original size:13 final size:13
Alignment explanation
Indices: 71999909--71999944 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
71999899 AATATAATCT
71999909 TAAATATTAAATA
1 TAAATATTAAATA
* *
71999922 TAAAAATTAAATC
1 TAAATATTAAATA
71999935 TAAATATTAA
1 TAAATATTAA
71999945 TAAATTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATATTAAATA
Found at i:72000795 original size:2 final size:2
Alignment explanation
Indices: 72000788--72000815 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72000778 ACTCAATTTC
72000788 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72000816 TATTTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72004004 original size:2 final size:2
Alignment explanation
Indices: 72003997--72004032 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
72003987 CGGCTCTTGC
72003997 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72004033 GTTTGCACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72004845 original size:40 final size:40
Alignment explanation
Indices: 72004776--72004966 Score: 195
Period size: 40 Copynumber: 4.8 Consensus size: 40
72004766 CATGAGCATT
* * *
72004776 TGAATGATACCCGAGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAA-GATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
*
72004817 TGAAGATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** ** *
72004857 TGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGAAGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** * *
72004897 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGAAGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** * *
72004937 TTACCAAATCCGGGTTAAGACCCGAAGGCA
1 TGAAGATATCCGGGCTAAGACCCGAAGGCA
72004967 ATTGTGCTTA
Statistics
Matches: 133, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.95
41 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TGAAGATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:72004983 original size:80 final size:80
Alignment explanation
Indices: 72004790--72004993 Score: 216
Period size: 80 Copynumber: 2.6 Consensus size: 80
72004780 TGATACCCGA
* ** * *** * *
72004790 GCTAAGTCCCGAAGGCATTTATGCTAGTGAAGATATCCGGGCTAAGTCCCGAAGGCATTTATGCT
1 GCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTATGCA
** *
72004855 AGTGATTATATCCGG
66 AGTGACCAAATCCGG
* *
72004870 GCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 GCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTATGCA
*
72004935 AGTTACCAAATCCGG
66 AGTGACCAAATCCGG
* *
72004950 GTTAAGACCCGAAGGCAATT-GTGCTTA-TGGTTATATCC-GGCTAA
1 GCTAAGACCCGAAGGC-ATTCGTGC-GAGTGGTTATATCCGGGCTAA
72004994 ATTCCGAAGA
Statistics
Matches: 104, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 6 0.06
80 94 0.90
81 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
GCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTATGCA
AGTGACCAAATCCGG
Found at i:72004988 original size:40 final size:40
Alignment explanation
Indices: 72004790--72004993 Score: 189
Period size: 40 Copynumber: 5.1 Consensus size: 40
72004780 TGATACCCGA
* * * ***
72004790 GCTAAGTCCCGAAGGCATTTATGCTAGTGAAGATATCCGG
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
* * * *
72004830 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGG
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
* *
72004870 GCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGG
1 GCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGG
* * **** *
72004910 GCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGG
1 GCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
*
72004950 GTTAAGACCCGAAGGCAATTGTGCTTA-TGGTTATATCC-G
1 GCTAAGACCCGAAGGCAATTGTGC-TAGTGGTTATATCCGG
72004989 GCTAA
1 GCTAA
72004994 ATTCCGAAGA
Statistics
Matches: 138, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 7 0.05
40 128 0.93
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
Found at i:72008751 original size:2 final size:2
Alignment explanation
Indices: 72008744--72008780 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
72008734 CATATTTGAT
72008744 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72008781 CTTAAAAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:72010524 original size:23 final size:21
Alignment explanation
Indices: 72010477--72010529 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
72010467 TTCCTTTTTT
* *
72010477 TTAGATTTTACATCTTAATTT
1 TTAGATTTTACATCTTAAATA
*
72010498 TTAGATTTTACGATTTTTAAATA
1 TTAGATTTTAC-A-TCTTAAATA
72010521 TTAGATTTT
1 TTAGATTTT
72010530 CAGGCTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 11 0.41
22 1 0.04
23 15 0.56
ACGTcount: A:0.30, C:0.06, G:0.08, T:0.57
Consensus pattern (21 bp):
TTAGATTTTACATCTTAAATA
Found at i:72013840 original size:2 final size:2
Alignment explanation
Indices: 72013835--72013859 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
72013825 ACCAAAACTT
72013835 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
72013860 TCAATTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:72017205 original size:93 final size:92
Alignment explanation
Indices: 72017047--72017228 Score: 224
Period size: 93 Copynumber: 2.0 Consensus size: 92
72017037 TTATTAACTG
* * * *
72017047 TAAAATGGTATCGATACCAGGCAGGGTATCAATACTTTGTTAAGGGTATTAATACATTTGATTTT
1 TAAAATGATATCGATACCAGGAAGGGTATCAATAATTTGTTAAGGGTATCAATACATTTGATTTT
*
72017112 TGTTCAATTTTTCAAAACATTGAAGCT
66 TGCTCAATTTTTCAAAACATTGAAGCT
* * *
72017139 TAAAATGATATCGATACCAGGAAAGGGTATCGATAATTT-TTGCAA-GGTATCGATACTTTTGAT
1 TAAAATGATATCGATACCAGG-AAGGGTATCAATAATTTGTT--AAGGGTATCAATACATTTGAT
* * *
72017202 TTTTGCTCGATTTTTCTAAACTTTGAA
63 TTTTGCTCAATTTTTCAAAACATTGAA
72017229 ATTCAAATTG
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
92 22 0.29
93 52 0.68
94 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (92 bp):
TAAAATGATATCGATACCAGGAAGGGTATCAATAATTTGTTAAGGGTATCAATACATTTGATTTT
TGCTCAATTTTTCAAAACATTGAAGCT
Found at i:72017946 original size:56 final size:57
Alignment explanation
Indices: 72017882--72017988 Score: 155
Period size: 56 Copynumber: 1.9 Consensus size: 57
72017872 TCATTTTCTT
** *
72017882 TTTGGAGAAAATGACATTCATTTCCAAATGA-TTT-CATTTCTCCATTTTCATTATCA
1 TTTGGAGAAAACCACAATCATTTCCAAAT-ACTTTCCATTTCTCCATTTTCATTATCA
*
72017938 TTTGGAGAAAACCATAATCATTTCCAAATACTTTCCATTTCTCCATTTTCA
1 TTTGGAGAAAACCACAATCATTTCCAAATACTTTCCATTTCTCCATTTTCA
72017989 CCATTTCTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
55 1 0.02
56 28 0.62
57 16 0.36
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (57 bp):
TTTGGAGAAAACCACAATCATTTCCAAATACTTTCCATTTCTCCATTTTCATTATCA
Found at i:72021611 original size:15 final size:16
Alignment explanation
Indices: 72021584--72021613 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72021574 AGATATTCCA
72021584 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
72021600 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
72021614 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:72025269 original size:17 final size:17
Alignment explanation
Indices: 72025240--72025285 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
72025230 TCTTGATTAG
*
72025240 TTTATTGATTTTTATCA
1 TTTATTTATTTTTATCA
* * *
72025257 TTTGTTTATTTTTCTTA
1 TTTATTTATTTTTATCA
72025274 TTTATTTATTTT
1 TTTATTTATTTT
72025286 ATTTAATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTATTTATTTTTATCA
Found at i:72027225 original size:28 final size:28
Alignment explanation
Indices: 72027185--72027254 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
72027175 ATGAAAATTT
** *
72027185 CACTAAGCATGCGAGTTTGGTTAAT-GAG
1 CACTAAGTGTGCGAGTTTGATT-ATCGAG
72027213 CACTAAGTGTGCGAGTTTGATTATCGAG
1 CACTAAGTGTGCGAGTTTGATTATCGAG
72027241 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
72027255 AGGAAAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.05
28 36 0.95
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATCGAG
Found at i:72028978 original size:2 final size:2
Alignment explanation
Indices: 72028971--72029001 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
72028961 TGAAAGTTGA
72028971 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72029002 TTTGAAAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:72030087 original size:75 final size:74
Alignment explanation
Indices: 72029976--72030158 Score: 276
Period size: 75 Copynumber: 2.4 Consensus size: 74
72029966 GGCCTAAAGA
* * *
72029976 CCCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATAT
1 CCCGCAGGCT-TGTGCTGTAA-TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATAT
72030041 CCGGGTTAAAT
64 CCGGGTTAAAT
72030052 CCCGCAGGCTTCGTGCTGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATC
1 CCCGCAGGCTT-GTGCTGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATC
72030117 CGGGTTAAAT
65 CGGGTTAAAT
* *
72030127 CCCGCAGGCTTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTT-GTGCT-GTAATATATCCGGG
72030159 CCTTCGTACC
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
75 70 0.71
76 29 0.29
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.30
Consensus pattern (74 bp):
CCCGCAGGCTTGTGCTGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCC
GGGTTAAAT
Found at i:72030146 original size:38 final size:38
Alignment explanation
Indices: 72029976--72030158 Score: 282
Period size: 38 Copynumber: 4.8 Consensus size: 38
72029966 GGCCTAAAGA
*
72029976 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAAT
72030014 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
72030052 CCCGCAGGCTTCGTGCT-GTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
72030089 CCCACAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* * *
72030127 CCCGCAGGCTTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGG
72030159 CCTTCGTACC
Statistics
Matches: 136, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
37 37 0.27
38 97 0.71
39 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:72030201 original size:43 final size:43
Alignment explanation
Indices: 72030151--72030305 Score: 267
Period size: 43 Copynumber: 3.6 Consensus size: 43
72030141 GCTGGTATTA
*
72030151 TATTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
72030194 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
72030237 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC-AGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
*
72030280 TATTCTGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
72030306 GTAATGCCGG
Statistics
Matches: 108, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
42 1 0.01
43 107 0.99
ACGTcount: A:0.13, C:0.26, G:0.30, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:72031698 original size:3 final size:3
Alignment explanation
Indices: 72031685--72031740 Score: 89
Period size: 3 Copynumber: 19.0 Consensus size: 3
72031675 AGTTGAAAAG
72031685 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
72031729 AAT AAT AAT AAT
1 AAT AAT AAT AAT
72031741 GATATGATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.08
3 43 0.86
4 3 0.06
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:72032852 original size:27 final size:27
Alignment explanation
Indices: 72032822--72032894 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
72032812 TGCCAAAACT
*
72032822 GATATTGTGACAGAGTCACCAGATAT-A
1 GATATTGTGACAGAGCCACCAGA-ATCA
*
72032849 GATATTGTGGCAGAGCCACCAGAATCA
1 GATATTGTGACAGAGCCACCAGAATCA
* * *
72032876 GATAATGTGGCAAAGCCAC
1 GATATTGTGACAGAGCCAC
72032895 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (27 bp):
GATATTGTGACAGAGCCACCAGAATCA
Found at i:72032991 original size:20 final size:19
Alignment explanation
Indices: 72032935--72032991 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
72032925 TAACGGGTCT
72032935 ATAATCGGCACGAAGCCCACA
1 ATAA-CGGCAC-AAGCCCACA
* **
72032956 ATATCGATACAAAGCCCACA
1 ATAACGGCAC-AAGCCCACA
72032976 ATAACGGCACACAGCC
1 ATAACGGCACA-AGCC
72032992 TTCGGTAACA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 1 0.04
20 24 0.86
21 3 0.11
ACGTcount: A:0.40, C:0.33, G:0.16, T:0.11
Consensus pattern (19 bp):
ATAACGGCACAAGCCCACA
Found at i:72033078 original size:98 final size:98
Alignment explanation
Indices: 72032916--72033121 Score: 340
Period size: 98 Copynumber: 2.1 Consensus size: 98
72032906 AGTGGCACAA
* *
72032916 AGCCATCGATAACGGGTCTATAATCGGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAC
1 AGCCATCGATAACGGGTCAATAATCAGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAC
* *
72032981 GGCACACAGCCTTCGGTAACATGATCGGCACTC
66 GGCACACAACCTTCGGTAACATGATCGGAACTC
* * *
72033014 AGCCATTGATAACGGGTCAATAATCAGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
1 AGCCATCGATAACGGGTCAATAATCAGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAC
*
72033079 GGCACACAACCTTCGGTAACATGATTGGAACTC
66 GGCACACAACCTTCGGTAACATGATCGGAACTC
72033112 AGCCATCGAT
1 AGCCATCGAT
72033122 CGGTCAACAA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 99 1.00
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.17
Consensus pattern (98 bp):
AGCCATCGATAACGGGTCAATAATCAGCACGAAGCCCACAATATCGATACAAAGCCCACAATAAC
GGCACACAACCTTCGGTAACATGATCGGAACTC
Found at i:72033177 original size:27 final size:27
Alignment explanation
Indices: 72033127--72033208 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
72033117 TCGATCGGTC
* * *
72033127 AACAAATATTGTGACAAAGTCACCAGA
1 AACAGATATTGTGGCAAAGCCACCAGA
* *
72033154 TACAGATATTGTGGCAGAGCCACCA-A
1 AACAGATATTGTGGCAAAGCCACCAGA
*
72033180 AACAGATATTTGTGGCATAGCCACCAGA
1 AACAGATA-TTGTGGCAAAGCCACCAGA
72033208 A
1 A
72033209 CGTTTCCTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 8 0.17
27 36 0.78
28 2 0.04
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.20
Consensus pattern (27 bp):
AACAGATATTGTGGCAAAGCCACCAGA
Found at i:72033611 original size:27 final size:27
Alignment explanation
Indices: 72033433--72033611 Score: 268
Period size: 27 Copynumber: 6.6 Consensus size: 27
72033423 GGGTAAAATG
* * * *
72033433 GTAATTTTACCCTACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
72033460 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
72033487 GTAATTCTACCATACTGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
72033514 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
72033541 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
72033568 GTAATTCTACCCTACAGGCGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
72033595 GTAATTCTACCCTACAG
1 GTAATTCTACCCTACAG
72033612 ATATGAGATT
Statistics
Matches: 138, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:72035732 original size:27 final size:27
Alignment explanation
Indices: 72035691--72035772 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
72035681 CAGCATGGCT
* *
72035691 ACCAGAA-CTGATATTGTGACAGAGTC
1 ACCAGAATCAGATATTGTGACAGAGCC
*
72035717 ACCAGATAT-AGATATTGTGGCAGAGCC
1 ACCAGA-ATCAGATATTGTGACAGAGCC
* * *
72035744 ACCAGAATCAGATAATGTGGCAAAGCC
1 ACCAGAATCAGATATTGTGACAGAGCC
72035771 AC
1 AC
72035773 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
ACCAGAATCAGATATTGTGACAGAGCC
Found at i:72036032 original size:27 final size:26
Alignment explanation
Indices: 72035985--72036039 Score: 92
Period size: 27 Copynumber: 2.1 Consensus size: 26
72035975 TCGATCGGTC
72035985 AACAGATATTGTGGCAGAGCCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
*
72036011 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72036038 AA
1 AA
72036040 AGCTTCCTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72036294 original size:27 final size:27
Alignment explanation
Indices: 72036264--72036648 Score: 432
Period size: 27 Copynumber: 14.3 Consensus size: 27
72036254 GGGGTAAAAT
* * * *
72036264 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72036291 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
72036318 AGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72036345 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72036372 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72036399 AGTAATTCTACCCTAC-AGGCGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* * *
72036426 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72036453 GGTATTTCTACTCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
72036480 AGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72036507 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72036534 GGTATTTCTACCCTAAAAGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
72036561 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72036588 GGTAATTCTACCCTA-TAGTGGTATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
72036615 AGTAATTCTACCCTACGAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72036642 AGTAATT
1 GGTAATT
72036649 TTACAAATCG
Statistics
Matches: 310, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 4 0.01
27 302 0.97
28 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72036392 original size:81 final size:81
Alignment explanation
Indices: 72036265--72036648 Score: 477
Period size: 81 Copynumber: 4.7 Consensus size: 81
72036255 GGGTAAAATG
* * * * *
72036265 GTAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
* **
72036330 ATACAGGGGTATTTTG
66 CTACAGGGGTATTTCA
* *
72036346 GTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
72036411 CTACAGGCGTATTTCA
66 CTACAGGGGTATTTCA
* * * * * *
72036427 GTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACTCTACATGGGTATTTCAGTAATTTTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
*
72036492 CTACAGGGGTATTTTA
66 CTACAGGGGTATTTCA
* * * *
72036508 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAAAAGGGTATTT-AGGTAATTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA-GTAATTCTAC
* *
72036572 CCTACAAGGGTATTTCG
65 CCTACAGGGGTATTTCA
* **
72036589 GTAATTCTACCCTA-TAGTGGTATTTTAGTAATTCTACCCTAC-GAGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTACAG-GGGTATTTCAGTAATT
72036649 TTACAAATCG
Statistics
Matches: 263, Mismatches: 36, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 260 0.99
82 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAGGGGTATTTCA
Found at i:72036660 original size:27 final size:27
Alignment explanation
Indices: 72036630--72036890 Score: 311
Period size: 27 Copynumber: 9.8 Consensus size: 27
72036620 TTCTACCCTA
72036630 CGAGGGTATTTCAGTAATTTTACAAAT
1 CGAGGGTATTTCAGTAATTTTACAAAT
* *
72036657 CGAGGGTATTTTAGTAATTTTGCAAA-
1 CGAGGGTATTTCAGTAATTTTACAAAT
* *
72036683 CTGAGGGTATTTCAATAATTTTACAAGT
1 C-GAGGGTATTTCAGTAATTTTACAAAT
72036711 CGAGGGTATTTCAGTAATTTTAC-AAT
1 CGAGGGTATTTCAGTAATTTTACAAAT
* * *
72036737 CGACGGTATTTCGGTAATTTTATAAAT
1 CGAGGGTATTTCAGTAATTTTACAAAT
* * *
72036764 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CGAGGGTA-TTTCAGTAATTTTACAAAT
72036791 CGAGGGTATTTCAGTAATTTTAC-AAT
1 CGAGGGTATTTCAGTAATTTTACAAAT
* *
72036817 CGATGGTATTTCAGTAATTTTATAAAT
1 CGAGGGTATTTCAGTAATTTTACAAAT
* * *
72036844 CGGGGGTACTTT-GGTAATTTTACAACT
1 CGAGGGTA-TTTCAGTAATTTTACAAAT
72036871 -G-GGGTATTTCAGTAATTTTA
1 CGAGGGTATTTCAGTAATTTTA
72036891 GTAAATTAAA
Statistics
Matches: 200, Mismatches: 26, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
24 3 0.01
25 14 0.07
26 50 0.25
27 126 0.63
28 7 0.04
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CGAGGGTATTTCAGTAATTTTACAAAT
Found at i:72036663 original size:81 final size:80
Alignment explanation
Indices: 72036282--72036755 Score: 415
Period size: 81 Copynumber: 5.9 Consensus size: 80
72036272 TACCCCATAA
* * * * **
72036282 GGGTATCTCGGTAATTCTACCCTA-TAGGGGTATTTCAGTAATTCTACCATACAGGGGTATTTTG
1 GGGTATTTCAGTAATTCTACCCTACGA-GGGTATTTCAGTAATTTTACCATACA-GGGTATTTCA
* *
72036346 GTAATTCTACCTTACAA
64 GTAATTCTACCCTACAG
* *
72036363 GGGTATTTCAGTAATTCTACCCTAC-AGGGGTATTTCAGTAATTCTACCCTACAGGCGTATTTCA
1 GGGTATTTCAGTAATTCTACCCTACGA-GGGTATTTCAGTAATTTTACCATACAGG-GTATTTCA
72036427 GTAATTCTACCCTACAG
64 GTAATTCTACCCTACAG
** * * * *
72036444 GGGTATTTTGGTATTTCTACTCTAC-ATGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTA
1 GGGTATTTCAGTAATTCTACCCTACGA-GGGTATTTCAGTAATTTTACCATACA-GGGTATTTCA
72036508 GTAATTCTACCCTACAG
64 GTAATTCTACCCTACAG
* * ** * * *
72036525 GGGTATTTCGGTATTTCTACCCTAAAAGGGTATTT-AGGTAATTCTACCCTACAAGGGTATTTCG
1 GGGTATTTCAGTAATTCTACCCTACGAGGGTATTTCA-GTAATTTTACCATAC-AGGGTATTTCA
*
72036589 GTAATTCTACCCTATAG
64 GTAATTCTACCCTACAG
* * * *
72036606 TGGTATTTTAGTAATTCTACCCTACGAGGGTATTTCAGTAATTTTA-CAAATCGAGGGTATTTTA
1 GGGTATTTCAGTAATTCTACCCTACGAGGGTATTTCAGTAATTTTACCATA-C-AGGGTATTTCA
** ** *
72036670 GTAATT-TTGCAAACTG
64 GTAATTCTACCCTACAG
* * ** * *
72036686 AGGGTATTTCAATAATTTTACAAGT-CGAGGGTATTTCAGTAATTTTACAAT-CGACGGTATTTC
1 -GGGTATTTCAGTAATTCTAC-CCTACGAGGGTATTTCAGTAATTTTACCATAC-AGGGTATTTC
*
72036749 GGTAATT
63 AGTAATT
72036756 TTATAAATCG
Statistics
Matches: 332, Mismatches: 50, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
80 25 0.08
81 300 0.90
82 7 0.02
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (80 bp):
GGGTATTTCAGTAATTCTACCCTACGAGGGTATTTCAGTAATTTTACCATACAGGGTATTTCAGT
AATTCTACCCTACAG
Found at i:72036665 original size:54 final size:52
Alignment explanation
Indices: 72036292--72036835 Score: 354
Period size: 54 Copynumber: 10.1 Consensus size: 52
72036282 GGGTATCTCG
* * * *
72036292 GTAATTCTACCCTA-TAGGGGTATTTCAGTAATTCTACCATACAGGGGTATTTTG
1 GTAATTCTACCCTACGA-GGGTATTTCAGTAATTTTACAAT-CA-GGGTATTTTA
* * * ** *
72036346 GTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACGAGGGTATTTCAGTAATTTTACAAT-CA-GGGTATTTTA
* ** *
72036400 GTAATTCTACCCTAC-AGGCGTATTTCAGTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACGAGG-GTATTTCAGTAATTTTACAAT-CA-GGGTATTTTA
* * **
72036454 GTATTTCTACTCTAC-ATGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACGA-GGGTATTTCAGTAATTTTACAAT-CA-GGGTATTTTA
* *
72036508 GTAATTCTACCCTAC-AGGGGTATTTCGGT-ATTTCTACCCTAA-AAGGGTA-TTTA
1 GTAATTCTACCCTACGA-GGGTATTTCAGTAATTT-TA--C-AATCAGGGTATTTTA
* * * *
72036561 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAT-AGTGGTATTTTA
1 -GTAATTCTACCCTACGAGGGTATTTCAGTAATTTTA--CAATCAG-GGTATTTTA
72036616 GTAATTCTACCCTACGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTA
1 GTAATTCTACCCTACGAGGGTATTTCAGTAATTTTAC-AATC-AGGGTATTTTA
** ** * *
72036670 GTAATT-TTGCAAACTGAGGGTATTTCAATAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTCTACCCTAC-GAGGGTATTTCAGTAATTTTACAA-TC-AGGGTATTTTA
* ** * * * * * *
72036724 GTAATTTTACAAT-CGACGGTATTTCGGTAATTTTATAAATCGGGGGTACTTTG
1 GTAATTCTACCCTACGAGGGTATTTCAGTAATTTTA-CAATC-AGGGTATTTTA
* ** * *
72036777 GTAATTTTACAAGT-CGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCA
1 GTAATTCTAC-CCTACGAGGGTATTTCAGTAATTTTACAATC-AGGGTATTTTA
72036830 GTAATT
1 GTAATT
72036836 TTATAAATCG
Statistics
Matches: 417, Mismatches: 52, Indels: 43
0.81 0.10 0.08
Matches are distributed among these distances:
52 1 0.00
53 77 0.18
54 322 0.77
55 16 0.04
56 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (52 bp):
GTAATTCTACCCTACGAGGGTATTTCAGTAATTTTACAATCAGGGTATTTTA
Found at i:72036782 original size:80 final size:80
Alignment explanation
Indices: 72036630--72036890 Score: 377
Period size: 80 Copynumber: 3.3 Consensus size: 80
72036620 TTCTACCCTA
* * ** *
72036630 CGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAA-CTGAGGGTA-T
1 CGAGGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCAGTAATTTTATAAATC-GGGGGTACT
**
72036693 TTCAATAATTTTACAAGT
64 TT-GGTAATTTTACAAGT
*
72036711 CGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAATCGGGGGTACTTT
1 CGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAGTAATTTTATAAATCGGGGGTACTTT
72036776 GGTAATTTTACAAGT
66 GGTAATTTTACAAGT
*
72036791 CGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCAGTAATTTTATAAATCGGGGGTACTTT
1 CGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAGTAATTTTATAAATCGGGGGTACTTT
*
72036856 GGTAATTTTACAACT
66 GGTAATTTTACAAGT
72036871 -G-GGGTATTTCAGTAATTTTA
1 CGAGGGTATTTCAGTAATTTTA
72036891 GTAAATTAAA
Statistics
Matches: 167, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
78 19 0.11
79 1 0.01
80 120 0.72
81 27 0.16
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
CGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAGTAATTTTATAAATCGGGGGTACTTT
GGTAATTTTACAAGT
Found at i:72036896 original size:53 final size:54
Alignment explanation
Indices: 72036630--72036896 Score: 278
Period size: 53 Copynumber: 5.0 Consensus size: 54
72036620 TTCTACCCTA
* * * **
72036630 CGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAA-
1 CGAGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAGTAATTTTATAAAT
** * *
72036683 CTGAGGGTATTTCAATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTA-CAAT
1 C-GAGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAGTAATTTTATAAAT
* * * * * * *
72036737 CGACGGTATTTCGGTAATTTTATAAATCGGGGGTACTTT-GGTAATTTTACAAGT
1 CGAGGGTATTTCGGTAATTTTACAACTCGAGGGTA-TTTCAGTAATTTTATAAAT
* *
72036791 CGAGGGTATTTCAGTAATTTTACAA-TCGATGGTATTTCAGTAATTTTATAAAT
1 CGAGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAGTAATTTTATAAAT
*
72036844 CGGGGGTACTTT-GGTAATTTTACAACT-G-GGGTATTTCAGTAATTTTAGTAAAT
1 CGAGGGTA-TTTCGGTAATTTTACAACTCGAGGGTATTTCAGTAATTTTA-TAAAT
72036897 TAAAGTATTC
Statistics
Matches: 181, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
52 21 0.12
53 84 0.46
54 76 0.42
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
CGAGGGTATTTCGGTAATTTTACAACTCGAGGGTATTTCAGTAATTTTATAAAT
Found at i:72038171 original size:2 final size:2
Alignment explanation
Indices: 72038164--72038191 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72038154 TGCATAATTG
72038164 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72038192 GTTCGGCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72043343 original size:48 final size:48
Alignment explanation
Indices: 72043272--72043465 Score: 343
Period size: 48 Copynumber: 4.0 Consensus size: 48
72043262 CAAGATAAAT
*
72043272 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
72043320 ATATGTATATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
72043368 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
72043416 ATATGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
72043464 AT
1 AT
72043466 GTGTGTATAT
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 140 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:72043671 original size:37 final size:37
Alignment explanation
Indices: 72043606--72043677 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
72043596 GGAAATATAT
* *
72043606 TCCGGGTAAGACCCGAAGTCTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGAAGACTACATGTGGAGATTTTG
*
72043643 TCCGGGTAAGACCCGATA-ACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGA-AGACTACATGTGGAGATTT
72043678 CATCTGAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 30 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGAAGACTACATGTGGAGATTTTG
Found at i:72045228 original size:40 final size:40
Alignment explanation
Indices: 72044957--72045216 Score: 405
Period size: 40 Copynumber: 6.5 Consensus size: 40
72044947 TATATATATA
72044957 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
*
72044997 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAAC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
* *
72045037 CGGGCT-AGTCCCGAACAGCATTCGTGCTAGTGATGTATA
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
72045076 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
* *
72045116 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
* ** * * *
72045156 CGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
*
72045196 CGGGCTAGGTCCCGAAGAGCA
1 CGGGCTAAGTCCCGAAGAGCA
72045217 ATCATGCTGG
Statistics
Matches: 201, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 36 0.18
40 165 0.82
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
Found at i:72045442 original size:25 final size:25
Alignment explanation
Indices: 72045392--72045442 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
72045382 TGTGTAACAA
* *
72045392 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
72045417 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
72045442 C
1 C
72045443 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:72048597 original size:48 final size:48
Alignment explanation
Indices: 72048526--72048719 Score: 352
Period size: 48 Copynumber: 4.0 Consensus size: 48
72048516 CAAGATAAAT
*
72048526 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
72048574 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
72048622 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
72048670 ATATGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
72048718 AT
1 AT
72048720 GTGTGTATAT
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 142 1.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:72048923 original size:37 final size:37
Alignment explanation
Indices: 72048860--72048931 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
72048850 GGAAATATAT
*
72048860 TCCGGGTAAGACTCGAAGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGAAGACTACGTGTGGAGATTTTG
*
72048897 TCCGGGTAAGACCCGATA-ACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGA-AGACTACGTGTGGAGATTT
72048932 CATCTGAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 31 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGAAGACTACGTGTGGAGATTTTG
Found at i:72050207 original size:20 final size:20
Alignment explanation
Indices: 72050182--72050298 Score: 110
Period size: 20 Copynumber: 5.9 Consensus size: 20
72050172 AAATGCTAAT
*
72050182 AGAGGCACCAGAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* ** *
72050202 AGAGGCACGATTGTGCAAAT
1 AGAGGCACCAAAGTGCAAAC
** *
72050222 AGAGGCACTGAATTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* * *
72050242 AGAGACACCAAAGTG-TAAT
1 AGAGGCACCAAAGTGCAAAC
72050261 AGAGGCACCAAAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* *
72050281 AGAGGCATCGAAGTGCAA
1 AGAGGCACCAAAGTGCAA
72050299 TCTCATACAA
Statistics
Matches: 75, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
19 16 0.21
20 59 0.79
ACGTcount: A:0.41, C:0.20, G:0.27, T:0.12
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:72050295 original size:39 final size:39
Alignment explanation
Indices: 72050175--72050296 Score: 138
Period size: 39 Copynumber: 3.1 Consensus size: 39
72050165 ACATCATAAA
* *
72050175 TGCTAATAGAGGCACCAGAGTGCAAACAGAGGCACGATTG
1 TGCTAATAGAGGCACCAAAGTGCAAACAGAGGCACGA-AG
* ** * * *
72050215 TGCAAATAGAGGCACTGAATTGCAAACAGAGACACCAAAG
1 TGCTAATAGAGGCACCAAAGTGCAAACAGAGGCA-CGAAG
72050255 TG-TAATAGAGGCACCAAAGTGCAAACAGAGGCATCGAAG
1 TGCTAATAGAGGCACCAAAGTGCAAACAGAGGCA-CGAAG
72050294 TGC
1 TGC
72050297 AATCTCATAC
Statistics
Matches: 65, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
39 32 0.49
40 31 0.48
41 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (39 bp):
TGCTAATAGAGGCACCAAAGTGCAAACAGAGGCACGAAG
Found at i:72056193 original size:48 final size:46
Alignment explanation
Indices: 72056097--72056193 Score: 133
Period size: 48 Copynumber: 2.1 Consensus size: 46
72056087 GAAAGGACAA
* *
72056097 AATGAGCCATGTAAATCCATATCAAATATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAACCCATATCAAATATATGGCATTGGAGACAGG
*
72056143 AATGAGCCATGTAAGCCCATAAT-ATATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAACCCAT-ATCA-A-ATATATGGCATTGGAGACAGG
72056191 AAT
1 AAT
72056194 AATTCATGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
46 19 0.42
47 3 0.07
48 23 0.51
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (46 bp):
AATGAGCCATGTAAACCCATATCAAATATATGGCATTGGAGACAGG
Done.