Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 242 of 328
Found at i:72058665 original size:20 final size:20
Alignment explanation
Indices: 72058640--72058756 Score: 92
Period size: 20 Copynumber: 5.9 Consensus size: 20
72058630 AGATGCTAAT
*
72058640 AGAGGCACCAGAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* ** **
72058660 AGAGGCACGATTGTGCAATT
1 AGAGGCACCAAAGTGCAAAC
* ** *
72058680 AGAGGTACTGAATTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* * *
72058700 AGAGACACCAAAGTG-TAAT
1 AGAGGCACCAAAGTGCAAAC
72058719 AGAGGCACCAAAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* *
72058739 AGAGGCATCGAAGTGCAA
1 AGAGGCACCAAAGTGCAA
72058757 TCTCATACAA
Statistics
Matches: 71, Mismatches: 25, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
19 16 0.23
20 55 0.77
ACGTcount: A:0.40, C:0.19, G:0.27, T:0.14
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:72058753 original size:39 final size:38
Alignment explanation
Indices: 72058636--72058753 Score: 119
Period size: 39 Copynumber: 3.0 Consensus size: 38
72058626 TCATAGATGC
* *
72058636 TAATAGAGGCACCAGAGTGCAAACAGAGGCACGATTGTG
1 TAATAGAGGCACCAAAGTGCAAACAGAGGCACGA-AGTG
* * ** * * *
72058675 CAATTAGAGGTACTGAATTGCAAACAGAGACACCAAAGTG
1 TAA-TAGAGGCACCAAAGTGCAAACAGAGGCA-CGAAGTG
72058715 TAATAGAGGCACCAAAGTGCAAACAGAGGCATCGAAGTG
1 TAATAGAGGCACCAAAGTGCAAACAGAGGCA-CGAAGTG
72058754 CAATCTCATA
Statistics
Matches: 60, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
39 31 0.52
40 27 0.45
41 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.27, T:0.15
Consensus pattern (38 bp):
TAATAGAGGCACCAAAGTGCAAACAGAGGCACGAAGTG
Found at i:72060462 original size:61 final size:58
Alignment explanation
Indices: 72060356--72060468 Score: 181
Period size: 61 Copynumber: 1.9 Consensus size: 58
72060346 TCACTTTAAT
*
72060356 ATTAAATTAATATAATACTTATCAAGATAAATATTAAATTAAATTTAATATTCAATCA
1 ATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTCAATCA
*
72060414 ATTAAATTAATAGAATACTTATCTACAAGATAAATATTAAATTTAATTTAATATT
1 ATTAAATTAATAGAATACTTA--T-CAAGATAAATATTAAATTAAATTTAATATT
72060469 AAGATAATCG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
58 20 0.40
60 1 0.02
61 29 0.58
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (58 bp):
ATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTCAATCA
Found at i:72063320 original size:46 final size:45
Alignment explanation
Indices: 72063177--72063320 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 45
72063167 CCCGCCCATA
*
72063177 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
72063226 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
72063269 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
72063316 AGTGA
1 AGTGA
72063321 CATGTCACTT
Statistics
Matches: 80, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 29 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:72077266 original size:2 final size:2
Alignment explanation
Indices: 72077259--72077286 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72077249 CACATTCGGC
72077259 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72077287 AATGTATGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72077875 original size:28 final size:28
Alignment explanation
Indices: 72077843--72077912 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
72077833 AATGAGATTG
*
72077843 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
72077871 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
72077899 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72077913 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:72085170 original size:2 final size:2
Alignment explanation
Indices: 72085163--72085198 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
72085153 CACATTCGGC
72085163 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72085199 AATGTATGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72085785 original size:28 final size:28
Alignment explanation
Indices: 72085753--72085822 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
72085743 AATGAGATTG
*
72085753 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
72085781 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
72085809 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72085823 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:72087563 original size:15 final size:15
Alignment explanation
Indices: 72087545--72087595 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
72087535 CTAATCCTAT
72087545 TAGACACATCACTAA
1 TAGACACATCACTAA
* *
72087560 TAGATACATGACT-A
1 TAGACACATCACTAA
* *
72087574 TCAGACACATCAATAC
1 T-AGACACATCACTAA
72087590 TAGACA
1 TAGACA
72087596 TTTCTTCTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 2 0.07
15 25 0.89
16 1 0.04
ACGTcount: A:0.45, C:0.24, G:0.10, T:0.22
Consensus pattern (15 bp):
TAGACACATCACTAA
Found at i:72098185 original size:94 final size:94
Alignment explanation
Indices: 72098087--72098257 Score: 245
Period size: 94 Copynumber: 1.8 Consensus size: 94
72098077 ATCTTTGTGT
* * * *
72098087 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATAGTATGG-CTGATGCATGTCCTAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATGGTC-GAAGCATGTCCCAAA
72098151 CATGTCTTACACTAGCCCTCGTCTGGATAC
65 CATGTCTTACACTAGCCCTCGTCTGGATAC
* * * * *
72098181 CGATGCCATGTCGCGGACATGGTCTTACACTGGCTCTCATAATGTGGTCGAAGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATGGTCGAAGCATGTCCCAAAC
72098246 ATGTCTTACACT
66 ATGTCTTACACT
72098258 GGCGCAAAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
94 66 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATGGTCGAAGCATGTCCCAAAC
ATGTCTTACACTAGCCCTCGTCTGGATAC
Found at i:72098252 original size:140 final size:138
Alignment explanation
Indices: 72097951--72098260 Score: 355
Period size: 140 Copynumber: 2.2 Consensus size: 138
72097941 TATTGCCAAT
*
72097951 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGAGTGGTGATGCATGTCCCAAACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATATA--AGTGGTGATGCATGTCCCAAACAT
*
72098016 GTCTTACACTAGCACAACCCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCACTCATCT
64 GTCTTACACTAGCACAACCCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCACTCATAT
* *
72098081 TTGTGTCGAT
129 GTGTGTCGAA
* *
72098091 GCCATGTCCCAGACATGGTCTTACATTGGCTATCATAGT-A-TGGCTGATGCATGTCCTAAACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATA-TAAGTGG-TGATGCATGTCCCAAACAT
** * * * * *
72098154 GTCTTACACTAGC-CCTCGTCTGGATA-CCGATGCCATGTCGCGGACATGGTCTTACACTGGCTC
64 GTCTTACACTAGCACAAC-CCT---TAGCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCAC
72098217 TCATAATGTG-GTCGAA
123 TCAT-ATGTGTGTCGAA
72098233 G-CATGTCCCAGACAT-GTCTTACACTGGC
1 GCCATGTCCCAGACATGGTCTTACACTGGC
72098261 GCAAAAATCA
Statistics
Matches: 147, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
137 5 0.03
138 34 0.23
140 53 0.36
141 28 0.19
142 24 0.16
143 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (138 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTATCATATAAGTGGTGATGCATGTCCCAAACATGT
CTTACACTAGCACAACCCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCACTCATATGT
GTGTCGAA
Found at i:72098640 original size:30 final size:30
Alignment explanation
Indices: 72098599--72098656 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
72098589 AAATTTACAT
* *
72098599 CTTTGGTAAAATAACCATTTTGCCCCTAGA
1 CTTTGGCAAAATAACCATTTTACCCCTAGA
*
72098629 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATAACCATTTTACCCCTA
72098657 TACCCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTTTACCCCTAGA
Found at i:72105692 original size:48 final size:45
Alignment explanation
Indices: 72105527--72105832 Score: 203
Period size: 48 Copynumber: 6.6 Consensus size: 45
72105517 TTGCCAATGC
* * *
72105527 CATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGAGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACT-GCACTCATCT-C-TGTGCTGATG
* * *
72105576 CATGTCCCAAACATGTCTTACACTAGCA--CAACTCT-TAGCCGATG
1 CATGTCCCAGACATGTCTTACACT-GCACTCATCTCTGT-GCTGATG
* *
72105620 CGTGTCCCAGACACGTCTTACACTGTCACTCATCTCTGTGCTGATG
1 CATGTCCCAGACATGTCTTACACTG-CACTCATCTCTGTGCTGATG
* *
72105666 CCATGTCCCAGACATGGTCTTACACTGGCTA-TCATAGTATG-GCTGATG
1 -CATGTCCCAGACAT-GTCTTACACT-GC-ACTCAT-CTCTGTGCTGATG
* * * * * *
72105714 CATGTCCTAAACATGTCTTACACTAGCCCTCGTCT-GGATGCCGATG
1 CATGTCCCAGACATGTCTTACACT-GCACTCATCTCTG-TGCTGATG
* * ** * *
72105760 CCATGTCCCGGACATGGTCTTACACTAGCTCTCAT-AATGTGGTCGAAG
1 -CATGTCCCAGACAT-GTCTTACACT-GCACTCATCTCTGTGCT-GATG
72105808 CATGTCCCAGACATGTCTTACACTG
1 CATGTCCCAGACATGTCTTACACTG
72105833 GCGCACAAAT
Statistics
Matches: 205, Mismatches: 35, Indels: 38
0.74 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 30 0.15
45 3 0.01
46 46 0.22
47 51 0.25
48 55 0.27
49 18 0.09
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGCACTCATCTCTGTGCTGATG
Found at i:72105736 original size:94 final size:92
Alignment explanation
Indices: 72105527--72105832 Score: 282
Period size: 94 Copynumber: 3.3 Consensus size: 92
72105517 TTGCCAATGC
* * *
72105527 CATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGAGTGCTGATG-CATGTCCCAAACAT-
1 CATGTCCCAGACAT-GTCTTACACT-GCACTCATCT--G-GTGCTGATGCCATGTCCCAGACATG
* * * *
72105590 GTCTTACACTAGC-A-CA-ACTCTTAGCCGATG
61 GTCTTACACTAGCTATCATAAT-ATGGCTGATG
* * *
72105620 CGTGTCCCAGACACGTCTTACACTGTCACTCATCTCTGTGCTGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTG-CACTCATCT-GGTGCTGATGCCATGTCCCAGACATGGTC
* *
72105685 TTACACTGGCTATCATAGTATGGCTGATG
64 TTACACTAGCTATCATAATATGGCTGATG
* * * * * *
72105714 CATGTCCTAAACATGTCTTACACTAGCCCTCGTCTGGATGCCGATGCCATGTCCCGGACATGGTC
1 CATGTCCCAGACATGTCTTACACT-GCACTCATCTGG-TGCTGATGCCATGTCCCAGACATGGTC
* * *
72105779 TTACACTAGCTCTCATAATGTGG-TCGAAG
64 TTACACTAGCTATCATAATATGGCT-GATG
72105808 CATGTCCCAGACATGTCTTACACTG
1 CATGTCCCAGACATGTCTTACACTG
72105833 GCGCACAAAT
Statistics
Matches: 177, Mismatches: 27, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
90 9 0.05
91 15 0.08
92 29 0.16
93 16 0.09
94 105 0.59
95 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTGCACTCATCTGGTGCTGATGCCATGTCCCAGACATGGTCTT
ACACTAGCTATCATAATATGGCTGATG
Found at i:72105826 original size:140 final size:139
Alignment explanation
Indices: 72105525--72105834 Score: 364
Period size: 140 Copynumber: 2.2 Consensus size: 139
72105515 TATTGCCAAT
*
72105525 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGAGTGCTGATGCATGTCCCAAACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATATAC-AGTGCTGATGCATGTCCCAAACAT
* * *
72105590 GTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGTCACTCATCT
65 GTCTTACACTAGCACAACTCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGTCACTCATCA
* *
72105655 CTGTGCTGAT
130 ATGTGCTGAA
* *
72105665 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA-TG-GCTGATGCATGTCCTAAACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATA-TACAGTGCTGATGCATGTCCCAAACAT
** * * *
72105728 GTCTTACACTAGC-CCTCGTCTGGATGCCGATGCCATGTCCCGGACATGGTCTTACACTAG-CTC
65 GTCTTACACTAGCACAAC-TCT-GA-GCCGATG-CATGTCCCAGACA-CGTCTTACACT-GTCAC
*
72105791 TCAT-AATGTGGTCGAA
124 TCATCAATGTGCT-GAA
72105807 G-CATGTCCCAGACAT-GTCTTACACTGGC
1 GCCATGTCCCAGACATGGTCTTACACTGGC
72105835 GCACAAATCA
Statistics
Matches: 148, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
137 2 0.01
138 36 0.24
139 2 0.01
140 56 0.38
141 32 0.22
142 19 0.13
143 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (139 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTATCATATACAGTGCTGATGCATGTCCCAAACATG
TCTTACACTAGCACAACTCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGTCACTCATCAA
TGTGCTGAA
Found at i:72106215 original size:30 final size:30
Alignment explanation
Indices: 72106174--72106231 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
72106164 AAATTTACAT
* *
72106174 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
72106204 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
72106232 TACCCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:72108976 original size:43 final size:42
Alignment explanation
Indices: 72108845--72108998 Score: 211
Period size: 42 Copynumber: 3.6 Consensus size: 42
72108835 CGAGGCTATG
* *
72108845 TGTAAGACCATATCTGAGATATGACATC-ATTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATTTCA
* * *
72108887 TTTAAGACCATATCTGGGATATGGCATCGATATGACATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * *
72108929 TGTAAGACCATAGCTGGGTTATTGGCATCGATATGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
72108972 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
72108999 TGGTATGGTA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 59 0.61
43 38 0.39
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:72108986 original size:85 final size:84
Alignment explanation
Indices: 72108844--72108998 Score: 231
Period size: 85 Copynumber: 1.8 Consensus size: 84
72108834 CCGAGGCTAT
* * *
72108844 GTGTAAGACCATATCTGAGATATGACATCATTATGAGATTTCATTTAAGACCATATCTGGGATAT
1 GTGTAAGACCATAGCTGAGATATGACATCATTATGAGATTACATGTAAGACCATATCTGGGATAT
72108909 GGCATCGATATGACATTTC
66 GGCATCGATATGACATTTC
* * *
72108928 GTGTAAGACCATAGCTGGGTTATTGGCATCGA-TATGAGATTACATGTAAGACCATATCTGGGAT
1 GTGTAAGACCATAGCTGAGATA-TGACATC-ATTATGAGATTACATGTAAGACCATATCTGGGAT
72108992 ATGGCAT
64 ATGGCAT
72108999 TGGTATGGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
84 19 0.30
85 43 0.68
86 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (84 bp):
GTGTAAGACCATAGCTGAGATATGACATCATTATGAGATTACATGTAAGACCATATCTGGGATAT
GGCATCGATATGACATTTC
Found at i:72109017 original size:85 final size:82
Alignment explanation
Indices: 72108840--72109017 Score: 214
Period size: 85 Copynumber: 2.1 Consensus size: 82
72108830 GTTACCGAGG
* * *
72108840 CTATGTGTAAGACCATATCTGAGATATGACATCATTATGAGATTTCATTTAAGACCATATCTGGG
1 CTATGTGTAAGACCATAGCTGAGATATGACATCATTATGAGATTACATGTAAGACCATATCTGGG
72108905 ATATGGCATCGATATGA
66 ATATGGCATCGATATGA
* * * *
72108922 CATTTCGTGTAAGACCATAGCTGGGTTATTGGCATCGA-TATGAGATTACATGTAAGACCATATC
1 C-TAT-GTGTAAGACCATAGCTGAGATA-TGACATC-ATTATGAGATTACATGTAAGACCATATC
* *
72108986 TGGGATATGGCATTGGTATGGTA
62 TGGGATATGGCATCGATAT-G-A
72109009 CTATGTGTA
1 CTATGTGTA
72109018 TTAGATTCCC
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
82 1 0.01
83 2 0.03
84 19 0.24
85 52 0.65
86 4 0.05
87 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (82 bp):
CTATGTGTAAGACCATAGCTGAGATATGACATCATTATGAGATTACATGTAAGACCATATCTGGG
ATATGGCATCGATATGA
Found at i:72114945 original size:50 final size:50
Alignment explanation
Indices: 72114869--72114984 Score: 196
Period size: 50 Copynumber: 2.3 Consensus size: 50
72114859 TGCTCCAGCA
*
72114869 CTTACATGGGATCACATATATCGATGCGAATGCCATGTCCCAGACATGGT
1 CTTACATGGGATCACATATATCGATGCCAATGCCATGTCCCAGACATGGT
* * *
72114919 CTTACATGGGATCACATATATTGATGCCAATGTCATGTTCCAGACATGGT
1 CTTACATGGGATCACATATATCGATGCCAATGCCATGTCCCAGACATGGT
72114969 CTTACATGGGATCACA
1 CTTACATGGGATCACA
72114985 AATAACCCTA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (50 bp):
CTTACATGGGATCACATATATCGATGCCAATGCCATGTCCCAGACATGGT
Found at i:72120261 original size:14 final size:14
Alignment explanation
Indices: 72120228--72120273 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
72120218 GGGATTTTGA
*
72120228 GATTTCGATTTGGG
1 GATTTTGATTTGGG
72120242 GATTTTGATTTGGG
1 GATTTTGATTTGGG
* * *
72120256 GTTTTTAATTTTGG
1 GATTTTGATTTGGG
72120270 GATT
1 GATT
72120274 CCAATTTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.15, C:0.02, G:0.30, T:0.52
Consensus pattern (14 bp):
GATTTTGATTTGGG
Found at i:72120468 original size:21 final size:21
Alignment explanation
Indices: 72120444--72120496 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
72120434 AACGTCGTTA
*
72120444 ATATTTAATTTTTTTATTTTT
1 ATATTTAATTTTTATATTTTT
* *
72120465 ATATTAAATTATTATATTTTT
1 ATATTTAATTTTTATATTTTT
72120486 ATA-TTAATTTT
1 ATATTTAATTTT
72120497 AAATAAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
ATATTTAATTTTTATATTTTT
Found at i:72120818 original size:18 final size:17
Alignment explanation
Indices: 72120795--72120833 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
72120785 TTATCTCTTA
72120795 AATAATTTAAACTATAAT
1 AATAATTTAAA-TATAAT
* *
72120813 AATAATTTTAATATATT
1 AATAATTTAAATATAAT
72120830 AATA
1 AATA
72120834 TTAATATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAATTTAAATATAAT
Found at i:72130643 original size:28 final size:28
Alignment explanation
Indices: 72130603--72130719 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
72130593 AATACTGTTG
*
72130603 CATATTCAACATCTCGCACACTAAGTGC
1 CATACTCAACATCTCGCACACTAAGTGC
*
72130631 CATACTCAACATCTCGCACAATAAGTGC
1 CATACTCAACATCTCGCACACTAAGTGC
* * * *
72130659 CATTCTTAATGAT-TCGCACACTAAGTTC
1 CATACTCAA-CATCTCGCACACTAAGTGC
* *
72130687 CATACTCAATATCTAGCACACTAAGTGC
1 CATACTCAACATCTCGCACACTAAGTGC
72130715 CATAC
1 CATAC
72130720 ATAGCTGAAG
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
27 2 0.03
28 71 0.95
29 2 0.03
ACGTcount: A:0.33, C:0.30, G:0.10, T:0.26
Consensus pattern (28 bp):
CATACTCAACATCTCGCACACTAAGTGC
Found at i:72130788 original size:40 final size:40
Alignment explanation
Indices: 72130703--72130796 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
72130693 CAATATCTAG
*
72130703 CACACTAAGTGCCATACATAGCTGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATACATAGCTGAAGCTATCTCAAACCA
* * * * *
72130743 CACACTAAGTGTCGTACATAGTTGAAGCTATCTCGAACCG
1 CACACTAAGTGCCATACATAGCTGAAGCTATCTCAAACCA
* *
72130783 TACACTAAATGCCA
1 CACACTAAGTGCCA
72130797 CATTTAGTTG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCTGAAGCTATCTCAAACCA
Found at i:72134320 original size:67 final size:63
Alignment explanation
Indices: 72134236--72134427 Score: 215
Period size: 64 Copynumber: 3.0 Consensus size: 63
72134226 CTAGCCAGTT
* * * *
72134236 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA-ACCATGCATGCAACCTAGCTAC
1 TATCCCGTAGCTCTCTTGTCTACATGGTGTAC-ACA-TAGGATACC---CATGCAACCTAGCTAC
72134300 ATA
61 ATA
* * * *
72134303 TATCCCGTAGCTCTCTTGTCTACATGGCGTACACATAGTATTACCCATTCGACCTAGCTACATA
1 TATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGGA-TACCCATGCAACCTAGCTACATA
* * *
72134367 TATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATTCGACCTAGCTAC
1 TATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGGAT-ACCCATGCAACCTAGCTAC
72134428 GTCATAATGT
Statistics
Matches: 113, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
63 1 0.01
64 75 0.66
65 3 0.03
66 2 0.02
67 32 0.28
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (63 bp):
TATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGGATACCCATGCAACCTAGCTACATA
Found at i:72134375 original size:64 final size:64
Alignment explanation
Indices: 72134290--72134427 Score: 258
Period size: 64 Copynumber: 2.2 Consensus size: 64
72134280 CATGCATGCA
*
72134290 ACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGCGTACACATAGTATTACCCATTCG
1 ACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGCGTACACATAGTATCACCCATTCG
*
72134354 ACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATTCG
1 ACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGCGTACACATAGTATCACCCATTCG
72134418 ACCTAGCTAC
1 ACCTAGCTAC
72134428 GTCATAATGT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 72 1.00
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.30
Consensus pattern (64 bp):
ACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGCGTACACATAGTATCACCCATTCG
Found at i:72138514 original size:25 final size:25
Alignment explanation
Indices: 72138480--72138541 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
72138470 CCCACAGCTT
72138480 GTGAGAGCATACC-GATTTATAACTC
1 GTGAGAGCATACCAG-TTTATAACTC
* *
72138505 GTGAGAGCATATCAGTTTATAGCTC
1 GTGAGAGCATACCAGTTTATAACTC
*
72138530 GTGTGAGCATAC
1 GTGAGAGCATAC
72138542 ATGTACAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
GTGAGAGCATACCAGTTTATAACTC
Found at i:72141577 original size:40 final size:39
Alignment explanation
Indices: 72141412--72141595 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72141402 AAATTGAATG
* * *
72141412 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72141452 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72141492 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72141532 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72141571 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72141596 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72141620 original size:80 final size:81
Alignment explanation
Indices: 72141452--72141640 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72141442 GCTGGAAATT
* * * *
72141452 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72141517 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72141533 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72141596 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72141612 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72141641 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72148789 original size:39 final size:39
Alignment explanation
Indices: 72148705--72148857 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
72148695 TATGGTAACC
** * *
72148705 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72148745 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72148784 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72148823 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72148858 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72148830 original size:78 final size:79
Alignment explanation
Indices: 72148674--72148856 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
72148664 TCGTTCAAAC
* * **
72148674 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
72148739 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
72148754 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
72148818 CAATTTGCACAATT
66 CAATTTGCACAATT
72148832 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
72148857 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:72156780 original size:39 final size:39
Alignment explanation
Indices: 72156696--72156848 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
72156686 TATGGTAACC
** * *
72156696 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72156736 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72156775 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72156814 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72156849 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72156821 original size:78 final size:79
Alignment explanation
Indices: 72156677--72156847 Score: 272
Period size: 78 Copynumber: 2.2 Consensus size: 79
72156667 CCTCGGGACA
* **
72156677 TAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
1 TAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
72156742 ATTGCCTTCGGGCT
66 ATTGCCTTCGGGCT
* ** *
72156756 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACA
1 TAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
72156820 ATTGCCTTCGGGCT
66 ATTGCCTTCGGGCT
72156834 TAGCCCGGATATCA
1 TAGCCCGGATATCA
72156848 CTCGAACATT
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 54 0.64
79 31 0.36
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (79 bp):
TAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
ATTGCCTTCGGGCT
Found at i:72162062 original size:46 final size:45
Alignment explanation
Indices: 72162012--72162182 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
72162002 TGGTTGAGCA
72162012 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * ** *** *
72162058 TCCGAACTCGTTGAGTCCGAGTTCGAG-AGA-TGTAACTA-G-GCA-
1 TCCGAACTCGTTGAGT-TGAGTCCGAGTTCACT-TATGGATGCGAAG
72162100 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
72162146 CCCGAACTCGTTGAGTTGATTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72162183 GCGGGTTACA
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
41 8 0.08
42 20 0.20
43 2 0.02
44 4 0.04
45 2 0.02
46 54 0.55
47 8 0.08
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:72162159 original size:41 final size:41
Alignment explanation
Indices: 72162026--72162161 Score: 105
Period size: 41 Copynumber: 3.2 Consensus size: 41
72162016 AACTCGTTGA
* *
72162026 GTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTC
1 GTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTC
*** * * * *
72162067 GTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGCATCCGAACTC
1 GTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC--CCGAACTC
72162109 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTC
1 -----GTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTC
72162155 GTTGAGT
1 GTTGAGT
72162162 TGATTCCGAG
Statistics
Matches: 70, Mismatches: 15, Indels: 20
0.67 0.14 0.19
Matches are distributed among these distances:
40 2 0.03
41 23 0.33
42 13 0.19
46 13 0.19
47 16 0.23
48 3 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (41 bp):
GTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTC
Found at i:72163765 original size:6 final size:6
Alignment explanation
Indices: 72163735--72163821 Score: 97
Period size: 6 Copynumber: 14.3 Consensus size: 6
72163725 AAGAAACATT
* * *
72163735 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
72163784 ATCAGA ATCAGA ATCAGA ATCAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
72163822 GTGAATGGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
5 3 0.04
6 60 0.88
7 3 0.04
8 2 0.03
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:72164609 original size:27 final size:27
Alignment explanation
Indices: 72164579--72164908 Score: 365
Period size: 27 Copynumber: 12.2 Consensus size: 27
72164569 AACACCCTAG
* *
72164579 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
** * *
72164606 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
72164633 GGGTAAAACAGTAATTCTATAAATCAA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
72164660 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* * * *
72164687 AGATAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
72164714 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* * *
72164741 GGGTAAAACAGTAATTTTTGTAAATCGA
1 GGGTAAAATAGTAA-TTCTATAAATCGA
* * *
72164769 GGGTAAAA-CGATAATTTTGTAAATCGA
1 GGGTAAAATAG-TAATTCTATAAATCGA
* * *
72164796 TGGTAAATTAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* **
72164823 GGGTAAAATAGTAATTTTGCAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
*
72164850 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
**
72164877 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
*
72164904 TGGTA
1 GGGTA
72164909 CTTTGGTAAT
Statistics
Matches: 264, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
27 241 0.91
28 23 0.09
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTATAAATCGA
Found at i:72164916 original size:27 final size:27
Alignment explanation
Indices: 72164587--72165084 Score: 180
Period size: 27 Copynumber: 18.4 Consensus size: 27
72164577 AGGGGTAAAA
* **
72164587 TGGTAATTTTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
* * * **
72164614 CGGTAATTCTGTAAATCAAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
** * **
72164641 CAGTAATTCTATAAATCAAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
* * * * * **
72164668 TAGTAATTCTGTAAATTGAAGATAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
* * * **
72164695 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
* **
72164722 TAGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
** * * **
72164749 CAGTAATTTTTGTAAATCGAGGGTAAAA
1 TGGTAA-TTCTATAAATCGAGGGTAATT
* * * * * *
72164777 CGATAATTTTGTAAATCGATGGTAAAT
1 TGGTAATTCTATAAATCGAGGGTAATT
* * **
72164804 TAGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
* * ** **
72164831 TAGTAATTTTGCAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
** **
72164858 CAGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAATT
* * *
72164885 CGGTAATTCTATAAATCGATGGTACTT
1 TGGTAATTCTATAAATCGAGGGTAATT
* * * *
72164912 TGGTAATTTTACAAGTCGAGGGTATTT
1 TGGTAATTCTATAAATCGAGGGTAATT
* * * *
72164939 TAGTAATTTTACAAGTCGAGGGT-ATT
1 TGGTAATTCTATAAATCGAGGGTAATT
* * *
72164965 TCAGTAATT-TCACAAATC-AGAGGTATTT
1 T-GGTAATTCT-ATAAATCGAG-GGTAATT
* * *
72164993 TGGTAATTTTACAAA-CTAGGGGT-ATGT
1 TGGTAATTCTATAAATCGA-GGGTAAT-T
* * * *
72165020 TGGTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTCTATAAATCGA-GGGTAATT
* * * *
72165047 TGGTAATTTTATAAACCAAGGGTATTT
1 TGGTAATTCTATAAATCGAGGGTAATT
72165074 TGGTAATTCTA
1 TGGTAATTCTA
72165085 CCCTACAAGG
Statistics
Matches: 402, Mismatches: 58, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.02
27 363 0.90
28 31 0.08
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (27 bp):
TGGTAATTCTATAAATCGAGGGTAATT
Found at i:72164921 original size:81 final size:81
Alignment explanation
Indices: 72164579--72164908 Score: 437
Period size: 81 Copynumber: 4.1 Consensus size: 81
72164569 AACACCCTAG
* * * *
72164579 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
*
72164644 TAATTCTATAAATCAA
66 TAATTCTATAAATCGA
* * * * * * *
72164660 GGGTAAAATAGTAATTCTGTAAATTGAAGATAAAATAGTAATTTTGTAAATCGAGGGTAAAATAG
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
72164725 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * **
72164741 GGGTAAAACAGTAATTTTTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAATCGATGGTAAATT
1 GGGTAAAATAGTAA-TTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAAC
*
72164805 AGTAATTCTGTAAATCGA
64 AGTAATTCTATAAATCGA
* * *
72164823 GGGTAAAATAGTAATTTTGCAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
72164888 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
*
72164904 TGGTA
1 GGGTA
72164909 CTTTGGTAAT
Statistics
Matches: 215, Mismatches: 31, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
81 144 0.67
82 71 0.33
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (81 bp):
GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
TAATTCTATAAATCGA
Found at i:72165016 original size:81 final size:82
Alignment explanation
Indices: 72164897--72165081 Score: 200
Period size: 81 Copynumber: 2.3 Consensus size: 82
72164887 GTAATTCTAT
* * * * * *
72164897 AAATC-GATGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAGTCGA-GG
1 AAATCAGAGGGTATTTTGGTAATTTTACAACTAGAGGGTATGTTAGTAATTTTACAA-ACGAGGG
72164960 GTATTTCAGTAATTTCAC
65 GTATTTCAGTAATTTCAC
* *
72164978 AAATCAGA-GGTATTTTGGTAATTTTACAAACTAG-GGGTATGTTGGTAATTTTACAAACTAGGG
1 AAATCAGAGGGTATTTTGGTAATTTTAC-AACTAGAGGGTATGTTAGTAATTTTACAAACGAGGG
** * *
72165041 GTATTTTGGTAATTTTAT
65 GTATTTCAGTAATTTCAC
*
72165059 AAACCA-AGGGTATTTTGGTAATT
1 AAATCAGAGGGTATTTTGGTAATT
72165082 CTACCCTACA
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
80 3 0.03
81 79 0.90
82 6 0.07
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (82 bp):
AAATCAGAGGGTATTTTGGTAATTTTACAACTAGAGGGTATGTTAGTAATTTTACAAACGAGGGG
TATTTCAGTAATTTCAC
Found at i:72165093 original size:27 final size:27
Alignment explanation
Indices: 72165063--72165118 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
72165053 TTTTATAAAC
** *
72165063 CAAGGGTATTTTGGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATACTACCCTA
*
72165090 CAAGGGTATTTCAGTAATACTAGCCTA
1 CAAGGGTATTTCAGTAATACTACCCTA
72165117 CA
1 CA
72165119 GATATGAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATACTACCCTA
Found at i:72165107 original size:81 final size:80
Alignment explanation
Indices: 72164930--72165107 Score: 173
Period size: 81 Copynumber: 2.2 Consensus size: 80
72164920 TTACAAGTCG
* * *
72164930 AGGGTATTTTAGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCAGAGGTATTTTG
1 AGGGTA-TTTAGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAACCAGAGGTATTTTG
*
72164995 GTAATTTTACAAACTA
65 GTAATTCTACAAACTA
* * ** * *
72165011 GGGGTATGTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATAAACCA-AGGGTATTT
1 AGGGTAT-TTAGTAATTTTAC-AACTAGAGGGTATTTCAGTAATTTCACAAACCAGA-GGTATTT
**
72165074 TGGTAATTCTACCCTAC-A
63 TGGTAATTCTA-CAAACTA
72165092 AGGGTATTTCAGTAAT
1 AGGGTATTT-AGTAAT
72165108 ACTAGCCTAC
Statistics
Matches: 78, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
80 4 0.05
81 67 0.86
82 7 0.09
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (80 bp):
AGGGTATTTAGTAATTTTACAACTAGAGGGTATTTCAGTAATTTCACAAACCAGAGGTATTTTGG
TAATTCTACAAACTA
Found at i:72168189 original size:42 final size:42
Alignment explanation
Indices: 72168142--72168233 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
72168132 TGGCCCTTAG
* ** *
72168142 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
72168184 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
72168226 GCCCATTT
1 GCCCATTT
72168234 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:72168450 original size:25 final size:26
Alignment explanation
Indices: 72168381--72168450 Score: 117
Period size: 25 Copynumber: 2.8 Consensus size: 26
72168371 CTCTTTTAAT
*
72168381 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTCTGATA
72168406 AACTGGGGCAGAGCCCTTTTCTG-TA
1 AACTGGGGCAGAGCCCTTTTCTGATA
72168431 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
72168451 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 37 0.86
26 6 0.14
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (26 bp):
AACTGGGGCAGAGCCCTTTTCTGATA
Found at i:72169402 original size:27 final size:26
Alignment explanation
Indices: 72169349--72169427 Score: 61
Period size: 27 Copynumber: 3.0 Consensus size: 26
72169339 TTTCATCCTA
* * **
72169349 CAAGGGTATTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGT-AATTTTTAAAC
72169376 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTT-TAAAC
* * *
72169403 TAATGGTGTTCTTA-TAATTTTTAAA
1 CAAGGGTATT-TTAGTAATTTTTAAA
72169428 AAAAGTCAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
26 8 0.19
27 32 0.74
28 3 0.07
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (26 bp):
CAAGGGTATTTTAGTAATTTTTAAAC
Found at i:72169478 original size:27 final size:25
Alignment explanation
Indices: 72169440--72169533 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 25
72169430 AAGTCAACGA
* *
72169440 TATTTTTGTAATTTTGTAAATAAGGGG
1 TATTTTGGTAATTTT-CAAAT-AGGGG
*
72169467 TATTTTGGTAATTTTACAAATTGAGGG
1 TATTTTGGTAATTTT-CAAATAG-GGG
* * *
72169494 TATTTCGGTAATTTCTCAAACCAGTGG
1 TATTTTGGTAATTT-TCAAA-TAGGGG
72169521 TATTTTGGTAATT
1 TATTTTGGTAATT
72169534 CTATCCTACA
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
26 1 0.02
27 52 0.95
28 2 0.04
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.46
Consensus pattern (25 bp):
TATTTTGGTAATTTTCAAATAGGGG
Found at i:72169602 original size:27 final size:27
Alignment explanation
Indices: 72169565--72169656 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
72169555 GTAATTTCAC
72169565 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* **
72169592 AATAGAGGGTAAAGTGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
72169619 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
72169646 AATCGAGGGTA
1 AATCGAGGGTA
72169657 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:72169666 original size:27 final size:27
Alignment explanation
Indices: 72169565--72169670 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
72169555 GTAATTTCAC
* *
72169565 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * *
72169592 AATAGAGGGTAAAGTGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
72169619 AATCGAGGGTAAAACGATAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
***
72169646 AATCGAGGGTACTTTGGTAATTTTA
1 AATCGAGGGTAAAATGGTAATTTTA
72169671 CAAGTTGAGG
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.33
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:72169681 original size:54 final size:53
Alignment explanation
Indices: 72169555--72169683 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 53
72169545 GGGTATTTCA
* * *
72169555 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAATAGAGGGTAAAGTG
1 GTAATTTTACAATCGAGGGTAAAACGATAATTTTATAAATAGAGGGTAAAGTG
* ***
72169608 GTAATTTTGTA-AATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTACTTTG
1 GTAA-TTT-TACAATCGAGGGTAAAACGATAATTTTATAAATAGAGGGTAAAGTG
*
72169662 GTAATTTTACAAGTTGAGGGTA
1 GTAATTTTACAA-TCGAGGGTA
72169684 TTTCAGTAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
52 2 0.03
53 9 0.14
54 52 0.81
55 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.33
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGATAATTTTATAAATAGAGGGTAAAGTG
Found at i:72169692 original size:27 final size:27
Alignment explanation
Indices: 72169636--72169695 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
72169626 GGTAAAACGA
* *
72169636 TAATTTTATAAATCGAGGGTACTTTGG
1 TAATTTTACAAATCGAGGGTACTTTAG
* *
72169663 TAATTTTACAAGTTGAGGGTA-TTTCAG
1 TAATTTTACAAATCGAGGGTACTTT-AG
72169690 TAATTT
1 TAATTT
72169696 GGTAAACTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTACTTTAG
Found at i:72175409 original size:55 final size:55
Alignment explanation
Indices: 72175323--72175431 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
72175313 TGGTGTTGTA
* *
72175323 GTGGACTGTAGAAGACAAGTTATCCAATTAAAATGTGGGAGTGGGGATGTTCTTT
1 GTGGACTGTAGAAGAAAAGTTATCCAATTAAAATGTGGGAGCGGGGATGTTCTTT
* * *
72175378 GTGGACTGTAGACGAAAAGTTATCGAGTTAAAATGTGGGAGCGGGGATGTTCTT
1 GTGGACTGTAGAAGAAAAGTTATCCAATTAAAATGTGGGAGCGGGGATGTTCTT
72175432 CGGGTTGAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (55 bp):
GTGGACTGTAGAAGAAAAGTTATCCAATTAAAATGTGGGAGCGGGGATGTTCTTT
Found at i:72179727 original size:48 final size:47
Alignment explanation
Indices: 72179666--72179833 Score: 185
Period size: 48 Copynumber: 3.6 Consensus size: 47
72179656 GATATGAGTG
**
72179666 CTAGTGTAAGACATGTCTGGGACATTTATCAGCCTTGAGATATACCAA
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATA-CAA
* * ** ** * *
72179714 CCAGTGTAAGACATGTCTGGGACATGCATCGGTATTGAGA-CGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAA
* * *
72179760 CTAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGAGATATACAA
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAA
*
72179807 GCTAGTGTAAGACCTGTCTGGGACATG
1 -CTAGTGTAAGACATGTCTGGGACATG
72179834 GCGTCAGCTT
Statistics
Matches: 94, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
46 34 0.36
47 3 0.03
48 57 0.61
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAA
Found at i:72179980 original size:49 final size:49
Alignment explanation
Indices: 72179665--72179980 Score: 165
Period size: 49 Copynumber: 6.7 Consensus size: 49
72179655 TGATATGAGT
* ** * *
72179665 GCTAGTGTAAGACATGTCTGGGACAT-TTATCAGCCTTGAGATAT-ACCAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGA--AA
* * * ** * * * *
72179714 -CCAGTGTAAGACATGTCTGGGACAT-GCATCGGTATTG--AGACGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAA
* * * *
72179759 GCTAGTGTAAGACATGTCTAGGAAAT-GCATCAGCCTCGAGATAT-ACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGA-AA
* * **
72179807 GCTAGTGTAAGACCTGTCTGGGACATGGCGTCAG-CT---TGT-TGAGT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAA
* * * * * * * *
72179851 GTTTGTGTAAGACCTGTCTGGCACATGGCATCAACATTGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAA
* * * **
72179900 GCCAGTGTGAA-ACCTATTTGGGACACAGCATCAGCCTCGATATATGAAA
1 GCTAGTGT-AAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAA
* *
72179949 GTTAGTGTAAGACCTATCTGGGACATGGCATC
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
72179981 GACTTTCATG
Statistics
Matches: 199, Mismatches: 54, Indels: 28
0.71 0.19 0.10
Matches are distributed among these distances:
44 30 0.15
45 4 0.02
46 32 0.16
47 2 0.01
48 62 0.31
49 67 0.34
50 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAA
Found at i:72181938 original size:58 final size:57
Alignment explanation
Indices: 72181876--72182001 Score: 164
Period size: 57 Copynumber: 2.2 Consensus size: 57
72181866 AGATAGAAAT
* *
72181876 AGTGAAAATGGAGAAATGAGAA-ACATTTGGAAAGGATTATGATTTTCTCCAAAATGAA
1 AGTGAAAATGGAGAAA--AGAATACATTTGGAAAGGAATATGATTTTCTCCAAAATCAA
* * * *
72181934 AGTGAAAATAGAGAAAAGAATTCATTTGGAAATGAATGTGATTTTCTCCAAAATCAA
1 AGTGAAAATGGAGAAAAGAATACATTTGGAAAGGAATATGATTTTCTCCAAAATCAA
*
72181991 AATGAAAATGG
1 AGTGAAAATGG
72182002 CCTAAAAATG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
56 4 0.07
57 40 0.68
58 15 0.25
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (57 bp):
AGTGAAAATGGAGAAAAGAATACATTTGGAAAGGAATATGATTTTCTCCAAAATCAA
Found at i:72202052 original size:2 final size:2
Alignment explanation
Indices: 72202045--72202070 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
72202035 GAATAACTCA
72202045 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
72202071 TCATTTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72202861 original size:28 final size:28
Alignment explanation
Indices: 72202820--72202976 Score: 97
Period size: 28 Copynumber: 5.5 Consensus size: 28
72202810 GAAACACACT
* * * *
72202820 TCGCATACACAGTGCCCACTGACTGATT
1 TCGCACACATAGTGCCCACTGACAGATC
* * * *
72202848 TCGCACACATAGTGCTCGA-TTAAAGAAC
1 TCGCACACATAGTGC-CCACTGACAGATC
* *
72202876 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCC-CACTGA-CAGATC
* * *
72202905 TCGCACACATAGTGCTCGATTGA-AGAAC
1 TCGCACACATAGTGC-CCACTGACAGATC
*
72202933 TCGCACACATAGTGCCTCAACT-ACTGATC
1 TCGCACACATAGTGCC-C-ACTGACAGATC
*
72202962 TGGCACACATAGTGC
1 TCGCACACATAGTGC
72202977 TCGGTTGAAG
Statistics
Matches: 100, Mismatches: 20, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
27 3 0.03
28 51 0.51
29 44 0.44
30 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCCCACTGACAGATC
Found at i:72202908 original size:29 final size:29
Alignment explanation
Indices: 72202848--72202976 Score: 124
Period size: 29 Copynumber: 4.5 Consensus size: 29
72202838 CTGACTGATT
* *
72202848 TCGCACACATAGTG-CTCGATTA-AAGAAC
1 TCGCACACATAGTGCCTCAATTACAA-ATC
*
72202876 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACAAATC
*
72202905 TCGCACACATAGTG-CTCGATTGA-AGAA-C
1 TCGCACACATAGTGCCTCAATT-ACA-AATC
* **
72202933 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCCTCAATTACAAATC
*
72202962 TGGCACACATAGTGC
1 TCGCACACATAGTGC
72202977 TCGGTTGAAG
Statistics
Matches: 84, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
28 37 0.44
29 46 0.55
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTACAAATC
Found at i:72202915 original size:57 final size:57
Alignment explanation
Indices: 72202848--72203008 Score: 241
Period size: 57 Copynumber: 2.8 Consensus size: 57
72202838 CTGACTGATT
* *
72202848 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
**
72202905 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
72202962 TGGCACACATAGTGCTCGGTTGAAGAGCTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
72203009 TAATTCTAGC
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 95 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:72203082 original size:40 final size:40
Alignment explanation
Indices: 72203016--72203249 Score: 382
Period size: 40 Copynumber: 5.9 Consensus size: 40
72203006 TCATAATTCT
* * *
72203016 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACACC
72203055 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
* *
72203095 AGCACGATTGCTCTTTGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
* *
72203135 GGGACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
72203175 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
72203215 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
72203250 TAACTCTCAA
Statistics
Matches: 182, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 13 0.07
40 169 0.93
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
Found at i:72207475 original size:48 final size:48
Alignment explanation
Indices: 72207417--72207562 Score: 247
Period size: 48 Copynumber: 3.0 Consensus size: 48
72207407 ATATACACAC
* * *
72207417 ATCTCCTACATATTTCACACTAGCCTTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72207465 ATCTCATACATATTTCACATTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72207513 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
72207561 AT
1 AT
72207563 ATTTATCTTG
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:72210921 original size:40 final size:40
Alignment explanation
Indices: 72210877--72211137 Score: 405
Period size: 40 Copynumber: 6.5 Consensus size: 40
72210867 CCAGCATGAT
* * * *
72210877 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
72210917 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
72210957 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
72210997 TGCTCTTCGGGACTTAGCCCGTATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
72211037 TGCTGTTCGGGACATAGCCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
72211077 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
72211117 TGCTCTTCGGGACTTAGCCCG
1 TGCTCTTCGGGACTTAGCCCG
72211138 TATATATATA
Statistics
Matches: 201, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 201 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:72212686 original size:48 final size:48
Alignment explanation
Indices: 72212628--72212821 Score: 343
Period size: 48 Copynumber: 4.0 Consensus size: 48
72212618 ATATACACAC
* * *
72212628 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
72212676 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72212724 ATCTCATACATATTTCACATTAGCTATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
72212772 ATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
72212820 AT
1 AT
72212822 ATTTATCTTG
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 140 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:72233793 original size:40 final size:39
Alignment explanation
Indices: 72233733--72233896 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 39
72233723 CGGAATTTAA
* ** *
72233733 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
72233773 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
72233813 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * *
72233853 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
72233893 CCGG
1 CCGG
72233897 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 101 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:72233877 original size:80 final size:80
Alignment explanation
Indices: 72233733--72233896 Score: 213
Period size: 80 Copynumber: 2.0 Consensus size: 80
72233723 CGGAATTTAA
* * ** *
72233733 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
72233798 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
72233813 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
72233877 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
72233893 CCGG
1 CCGG
72233897 GTATCATTCA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 70 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:72241797 original size:40 final size:39
Alignment explanation
Indices: 72241737--72241900 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 39
72241727 CGGAATTTAA
* ** *
72241737 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAA-TGCCTTCGGGTCTTAGC
* *** *
72241777 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
72241817 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATGCCTTCGGGTCTTAGC
* * *
72241857 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTCTTAGC
72241897 CCGG
1 CCGG
72241901 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 101 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAATGCCTTCGGGTCTTAGC
Found at i:72241881 original size:80 final size:80
Alignment explanation
Indices: 72241737--72241900 Score: 213
Period size: 80 Copynumber: 2.0 Consensus size: 80
72241727 CGGAATTTAA
* * ** *
72241737 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
72241802 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
72241817 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
72241881 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
72241897 CCGG
1 CCGG
72241901 GTATCATTCA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 70 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:72248418 original size:2 final size:2
Alignment explanation
Indices: 72248413--72248440 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72248403 ACACACACAC
72248413 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72248441 GCAAAATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72261975 original size:13 final size:13
Alignment explanation
Indices: 72261957--72262004 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
72261947 GACACATGGG
72261957 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
*
72261970 CGTGTGTGACACAGG-
1 CGTGTGT--C-TAGGC
72261985 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
72261998 CGTGTGT
1 CGTGTGT
72262005 GACACACGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 3 0.10
13 15 0.52
15 8 0.28
16 3 0.10
ACGTcount: A:0.10, C:0.21, G:0.40, T:0.29
Consensus pattern (13 bp):
CGTGTGTCTAGGC
Found at i:72261989 original size:28 final size:28
Alignment explanation
Indices: 72261955--72262010 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
72261945 TAGACACATG
72261955 GGCGTGTGTCTAGGCCGTGTGTGACACA
1 GGCGTGTGTCTAGGCCGTGTGTGACACA
72261983 GGCGTGTGTCTAGGCCGTGTGTGACACA
1 GGCGTGTGTCTAGGCCGTGTGTGACACA
72262011 CGGCTCCCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.21, G:0.39, T:0.25
Consensus pattern (28 bp):
GGCGTGTGTCTAGGCCGTGTGTGACACA
Found at i:72265532 original size:50 final size:50
Alignment explanation
Indices: 72265457--72265584 Score: 186
Period size: 50 Copynumber: 2.6 Consensus size: 50
72265447 AGCTATTGTG
* **
72265457 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
72265507 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
72265557 -GGTCGCATGTGTAGTACTAAGTGCAGGC
1 AGGTCACGTGTGTAGTACTAAGTGCAGGC
72265585 AATTGTGTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 25 0.36
50 45 0.64
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:72270743 original size:100 final size:101
Alignment explanation
Indices: 72270607--72270799 Score: 298
Period size: 100 Copynumber: 1.9 Consensus size: 101
72270597 TTAATAATGT
* * * *
72270607 CATAACTCAGTTATGGTCTTATCATCAGAACGCCATAGCATAGTTATGGTCTTACATGTATACAC
1 CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
72270672 TACCATGGTCAAACCATGGTCTTACATCCATAGTTC
66 TACCATGGTCAAACCATGGTCTTACATCCATAGTTC
* * *
72270708 CATAACT-AGTTATGGTTTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATATACAC
1 CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
* *
72270772 TGCCATGGTCCAACCATGGTCTTACATC
66 TACCATGGTCAAACCATGGTCTTACATC
72270800 TAAATCATTG
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 76 0.92
101 7 0.08
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
TACCATGGTCAAACCATGGTCTTACATCCATAGTTC
Found at i:72270777 original size:35 final size:36
Alignment explanation
Indices: 72270737--72270817 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 36
72270727 ATCATCAAAA
* * *
72270737 TGCCATAGCCCAGCTATGGTCTTACATATATA-CAC
1 TGCCATAGCCCAACCATGGTCTTACATATAAATCAC
* * * *
72270772 TGCCATGGTCCAACCATGGTCTTACATCTAAATCAT
1 TGCCATAGCCCAACCATGGTCTTACATATAAATCAC
72270808 TGCCATAGCC
1 TGCCATAGCC
72270818 TTGCTACAGT
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
35 26 0.72
36 10 0.28
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (36 bp):
TGCCATAGCCCAACCATGGTCTTACATATAAATCAC
Found at i:72287287 original size:29 final size:28
Alignment explanation
Indices: 72287255--72287357 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72287245 GTGACGAGAT
* *
72287255 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
72287284 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
72287313 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
72287342 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72287358 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:72295060 original size:29 final size:28
Alignment explanation
Indices: 72295028--72295130 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72295018 GTGACGAGAT
* *
72295028 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
72295057 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
72295086 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
72295115 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72295131 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:72303021 original size:46 final size:47
Alignment explanation
Indices: 72302915--72303041 Score: 220
Period size: 46 Copynumber: 2.7 Consensus size: 47
72302905 GTGCTAATAA
72302915 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
* *
72302962 TACCTTAATTTGGCTACAGGCCATGATATAGGTATTTT-AGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
*
72303008 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTA
72303042 ATCCGGGATA
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 39 0.52
47 36 0.48
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
Found at i:72312052 original size:27 final size:26
Alignment explanation
Indices: 72312017--72312072 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
72312007 GGGCATAATC
* *
72312017 GTCATTTTAACATACAGGGGTATTACG
1 GTCACTTTAACATACAGGGGCATTA-G
* *
72312044 GTCACTTTACCCTACAGGGGCATTAG
1 GTCACTTTAACATACAGGGGCATTAG
72312070 GTC
1 GTC
72312073 TTTTTACCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GTCACTTTAACATACAGGGGCATTAG
Found at i:72312162 original size:27 final size:27
Alignment explanation
Indices: 72312138--72312451 Score: 206
Period size: 27 Copynumber: 11.7 Consensus size: 27
72312128 TCTACAAACC
* *
72312138 AAGGGTATTTCAGTAATTTTGCAAACT
1 AAGGGTATTTCAGTAATTTTACAAATT
* * *
72312165 AATGGTATTTCTA-TAATTTTAGAAAGTC
1 AAGGGTATTTC-AGTAATTTTACAAA-TT
* * * **
72312193 AAGGATATTTCTGTAATTATGTAAATT
1 AAGGGTATTTCAGTAATTTTACAAATT
* * *
72312220 AGGGGTAATTCTA-TAATTTTCCAAATT
1 AAGGGTATTTC-AGTAATTTTACAAATT
* *
72312247 AAGGGTATTTCACTAATTTTCCAAATT
1 AAGGGTATTTCAGTAATTTTACAAATT
* **
72312274 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCAGTAATTTTACAAATT
* * *
72312301 GAGGGTATTTCAGTAATTTTACAAGTC
1 AAGGGTATTTCAGTAATTTTACAAATT
* **
72312328 AA-GGTATTTC-GATAATTTTATAGGTT
1 AAGGGTATTTCAG-TAATTTTACAAATT
* * * *
72312354 GAGGGTATTTCAATAATTTCACAAACT
1 AAGGGTATTTCAGTAATTTTACAAATT
* * * *
72312381 AGGGGTATTTTAATAATTTTACAAATC
1 AAGGGTATTTCAGTAATTTTACAAATT
* ** ** **
72312408 AGGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTCAGTAATTTTACAAATT
72312435 AAGGGTA-TTCAGTAATT
1 AAGGGTATTTCAGTAATT
72312452 CTACCCTACA
Statistics
Matches: 222, Mismatches: 57, Indels: 17
0.75 0.19 0.06
Matches are distributed among these distances:
25 1 0.00
26 29 0.13
27 173 0.78
28 19 0.09
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTTTACAAATT
Found at i:72312438 original size:107 final size:108
Alignment explanation
Indices: 72312248--72312443 Score: 254
Period size: 107 Copynumber: 1.8 Consensus size: 108
72312238 TTCCAAATTA
* * ** *
72312248 AGGGTATTTCACTAATTTTCCAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCA
1 AGGGTATTTCAATAATTTTCCAAACTAGGGGTATTTTAATAATTTTACAAATAGAGGGTATTTCA
**
72312313 GTAATTTTACAAGTCAA-GGTATTTCGATAATTTTATAGGTTG
66 GTAATTTTACAAACCAAGGGTATTTCGATAATTTTATAGGTTG
72312355 AGGGTATTTCAATAA-TTTCACAAACTAGGGGTATTTTAATAATTTTACAAATCAG-GGGTATTT
1 AGGGTATTTCAATAATTTTC-CAAACTAGGGGTATTTTAATAATTTTACAAAT-AGAGGGTATTT
** **
72312418 TGGTAATTTTGTAAACCAAGGGTATT
64 CAGTAATTTTACAAACCAAGGGTATT
72312444 CAGTAATTCT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
106 4 0.05
107 64 0.85
108 7 0.09
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (108 bp):
AGGGTATTTCAATAATTTTCCAAACTAGGGGTATTTTAATAATTTTACAAATAGAGGGTATTTCA
GTAATTTTACAAACCAAGGGTATTTCGATAATTTTATAGGTTG
Found at i:72312502 original size:27 final size:25
Alignment explanation
Indices: 72312436--72312516 Score: 81
Period size: 27 Copynumber: 3.1 Consensus size: 25
72312426 TTGTAAACCA
*
72312436 AGGGTATTCAGTAATTCTACCCTAC
1 AGGGAATTCAGTAATTCTACCCTAC
* *
72312461 AAAGGAATTTAAGTAATTCTACCCTAC
1 -AGGGAA-TTCAGTAATTCTACCCTAC
* *
72312488 AGGTGCAATTCAGTAATACTAGCCTAC
1 AGG-G-AATTCAGTAATTCTACCCTAC
72312515 AG
1 AG
72312517 ATATGAGATT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
26 6 0.13
27 37 0.82
28 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (25 bp):
AGGGAATTCAGTAATTCTACCCTAC
Found at i:72320914 original size:22 final size:21
Alignment explanation
Indices: 72320889--72320937 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
72320879 GGCTTAGACT
*
72320889 CCCGTGTGGTCCAAGGGACATG
1 CCCGTGT-GACCAAGGGACATG
**
72320911 CCCGTGTGACCCTGGGACATG
1 CCCGTGTGACCAAGGGACATG
72320932 CCCGTG
1 CCCGTG
72320938 CTATAGGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (21 bp):
CCCGTGTGACCAAGGGACATG
Found at i:72324693 original size:46 final size:47
Alignment explanation
Indices: 72324640--72324815 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 47
72324630 TATTTGGGCA
72324640 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGCG
* * * * *
72324686 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAAGCG
* *
72324733 TCCGAGCTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAA-CG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGCG
* * *
72324779 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72324816 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGCG
Found at i:72324795 original size:93 final size:93
Alignment explanation
Indices: 72324636--72324808 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
72324626 GGGATATTTG
*
72324636 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCGCCCGAACTCGTTGAG
72324701 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
72324729 GGCATCCGAGCTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAA-CGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAGCGCCCGAACTCGTTGA
72324793 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
72324809 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72326759 original size:17 final size:17
Alignment explanation
Indices: 72326737--72326770 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
72326727 GGTAAGTATA
*
72326737 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
72326754 TATTGTCATTACATTTT
1 TATTGTCATTACATTTT
72326771 CATGTTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:72333969 original size:30 final size:29
Alignment explanation
Indices: 72333933--72333993 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
72333923 AAACAAAAGT
72333933 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
72333963 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
72333992 TT
1 TT
72333994 CGGTTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:72341671 original size:19 final size:19
Alignment explanation
Indices: 72341649--72341686 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
72341639 TCATTGTCAC
*
72341649 CCACTATAATCAAATTTGT
1 CCACCATAATCAAATTTGT
*
72341668 CCACCGTAATCAAATTTGT
1 CCACCATAATCAAATTTGT
72341687 TACTAACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (19 bp):
CCACCATAATCAAATTTGT
Found at i:72342501 original size:3 final size:3
Alignment explanation
Indices: 72342495--72342531 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
72342485 AAACTCTTTT
72342495 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
72342532 TTCATTAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:72342718 original size:40 final size:40
Alignment explanation
Indices: 72342674--72342844 Score: 184
Period size: 40 Copynumber: 4.3 Consensus size: 40
72342664 CGTTTAGATA
*
72342674 AAAAATGCTGCTATAGATCGAGCATTAGCAGTGCTTCTTG
1 AAAAATGCTGCTATAGATCGAGCATTAGCAGTGCTTTTTG
* * * *
72342714 AAAAACGCCGCTATAGATCGAGTATTAGCGGTGCTTTTTG
1 AAAAATGCTGCTATAGATCGAGCATTAGCAGTGCTTTTTG
* * *
72342754 AATAATGCTGTTATAGATCGAGCATTAGCAGTGCTTTTTA
1 AAAAATGCTGCTATAGATCGAGCATTAGCAGTGCTTTTTG
* * * * *
72342794 AAAAATGCCT-CTATAGGTTGACCATTAG-TGTCGCTTTTCG
1 AAAAATG-CTGCTATAGATCGAGCATTAGCAGT-GCTTTTTG
*
72342834 AAAAACGCTGC
1 AAAAATGCTGC
72342845 AAAAAAAATT
Statistics
Matches: 107, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 4 0.04
40 101 0.94
41 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (40 bp):
AAAAATGCTGCTATAGATCGAGCATTAGCAGTGCTTTTTG
Found at i:72342944 original size:40 final size:40
Alignment explanation
Indices: 72342889--72343038 Score: 192
Period size: 40 Copynumber: 3.8 Consensus size: 40
72342879 GTCTTTAGTG
* *
72342889 GCATTAGCTGCGCTTTTTGAAAAACGCCGTTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * *
72342929 GCATTAGCGGTGCTTTCTGAAAAACACCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * * *
72342969 GCATTAGCGGCACTTTTTTAAAAACGCCGCTATAGGTCAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * *
72343009 CCATTAGCAGTGCTTTTTGAAAAACGCCGC
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGC
72343039 AAAAAAATTA
Statistics
Matches: 93, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:72343033 original size:194 final size:193
Alignment explanation
Indices: 72342695--72343059 Score: 507
Period size: 194 Copynumber: 1.9 Consensus size: 193
72342685 TATAGATCGA
* * * * *
72342695 GCATTAGCAGTGCTTCTTGAAAAACGCCGCTATAGATCGAGTATTAGCGGTGCTTTTTGAATAAT
1 GCATTAGCAGCGCTTCTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTCTGAAAAAC
* * * ** * * ** *
72342760 GCTGTTATAGATCGAGCATTAGCAGTGCTTTTTAAAAAATGCCTCTATAGGTTGACCATTAGTGT
66 ACCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAACGCCGCTATAGGTCAACCATTAGAGT
*
72342825 CGCTTTTCGAAAAACGCTGCAAAAAAAATTAAGCACAACGCCCATTTTATGTTGGTCTTTAGTG
131 CGCTTTTCGAAAAACGCCGC-AAAAAAATTAAGCACAACGCCCATTTTATGTTGGTCTTTAGTG
* * *
72342889 GCATTAGCTGCGCTTTTTGAAAAACGCCGTTATAGATCGAGCATTAGCGGTGCTTTCTGAAAAAC
1 GCATTAGCAGCGCTTCTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTCTGAAAAAC
* *
72342954 ACCGCTATAGATCGAGCATTAGCGGCACTTTTTTAAAAACGCCGCTATAGGTCAACCATTAGCAG
66 ACCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAACGCCGCTATAGGTCAACCATTAG-AG
*
72343019 T-GCTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGCC
130 TCGCTTTTCGAAAAACGCCGCAAAAAAATTAAGCACAACGCC
72343060 GCTATTTGCT
Statistics
Matches: 148, Mismatches: 22, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
193 21 0.14
194 125 0.84
195 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (193 bp):
GCATTAGCAGCGCTTCTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGTGCTTTCTGAAAAAC
ACCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAACGCCGCTATAGGTCAACCATTAGAGT
CGCTTTTCGAAAAACGCCGCAAAAAAATTAAGCACAACGCCCATTTTATGTTGGTCTTTAGTG
Found at i:72343615 original size:14 final size:14
Alignment explanation
Indices: 72343598--72343658 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
72343588 ATGTTTATTA
72343598 TTTTGGGTTTATGG
1 TTTTGGGTTTATGG
* **
72343612 TTTTGTGTTTTAAAG
1 TTTTG-GGTTTATGG
* *
72343627 TTTAGGGTTTATGA
1 TTTTGGGTTTATGG
* *
72343641 TTTGGGGTTTAGGG
1 TTTTGGGTTTATGG
72343655 TTTT
1 TTTT
72343659 ATAGTTAGGG
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
14 24 0.71
15 10 0.29
ACGTcount: A:0.13, C:0.00, G:0.31, T:0.56
Consensus pattern (14 bp):
TTTTGGGTTTATGG
Found at i:72343669 original size:21 final size:21
Alignment explanation
Indices: 72343645--72343700 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 21
72343635 TTATGATTTG
72343645 GGGTTT-AGGGTTTTATAGTTA
1 GGGTTTAAGGGTTTTATA-TTA
*
72343666 GGGTTTTAAGGGTTTGAGTATTA
1 GGG-TTTAAGGGTTTTA-TATTA
72343689 GGGTTTAAGGGT
1 GGGTTTAAGGGT
72343701 AATTGATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 3 0.10
22 12 0.39
23 14 0.45
24 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.43
Consensus pattern (21 bp):
GGGTTTAAGGGTTTTATATTA
Found at i:72343673 original size:22 final size:22
Alignment explanation
Indices: 72343627--72343700 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
72343617 TGTTTTAAAG
* *
72343627 TTTAGGG-TTTAT-GATTTGGGG
1 TTTAGGGTTTTATAG-TTAGGGT
72343648 TTTAGGGTTTTATAGTTAGGGT
1 TTTAGGGTTTTATAGTTAGGGT
*
72343670 TTTAAGGGTTTGAGTA-TTAGGGT
1 TTT-AGGGTTTTA-TAGTTAGGGT
*
72343693 TTAAGGGT
1 TTTAGGGT
72343701 AATTGATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
21 7 0.16
22 18 0.40
23 18 0.40
24 2 0.04
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (22 bp):
TTTAGGGTTTTATAGTTAGGGT
Found at i:72344112 original size:17 final size:17
Alignment explanation
Indices: 72344090--72344123 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
72344080 ATCACATGTT
72344090 GTAAACATCAAAAATAA
1 GTAAACATCAAAAATAA
72344107 GTAAACATCAAAAATAA
1 GTAAACATCAAAAATAA
72344124 AATTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (17 bp):
GTAAACATCAAAAATAA
Found at i:72349614 original size:27 final size:27
Alignment explanation
Indices: 72349584--72349713 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
72349574 ATTACCAAAG
*
72349584 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
72349611 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
72349638 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
72349665 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
72349692 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
72349714 TAACATACCC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:72349631 original size:54 final size:54
Alignment explanation
Indices: 72349557--72349755 Score: 186
Period size: 54 Copynumber: 3.7 Consensus size: 54
72349547 ATTATTGAAA
* *
72349557 TACCCTCGACTTGTA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGA-TT-TACAGAATTACCAAATTACCCTCGATTTATAGAATTACTATTT
*** *
72349611 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCAAATTACCCTCGATTTATAGAATTACTATTT
* ** ** * * ***
72349665 TACCCTTGATTTACAGAATTATTATTTTACCCTCGATTTACAAAATTACTAACA
1 TACCCTCGATTTACAGAATTACCAAATTACCCTCGATTTATAGAATTACTATTT
* * * *
72349719 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGAT
1 TACCCTCGATTTACAGAATTACCAAATTACCCTCGAT
72349756 CAGCAAAATT
Statistics
Matches: 120, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 115 0.96
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCAAATTACCCTCGATTTATAGAATTACTATTT
Found at i:72349722 original size:27 final size:27
Alignment explanation
Indices: 72349556--72349938 Score: 150
Period size: 27 Copynumber: 14.3 Consensus size: 27
72349546 AATTATTGAA
* **
72349556 ATACCCTCGACTTGTAAAATTACCAA-
1 ATACCCTCGATTTACAAAATTACCAAT
* * *
72349582 AGTACCCTCGATTTATAGAATTACCATT
1 A-TACCCTCGATTTACAAAATTACCAAT
* * **
72349610 TTACCCTCGATTTACAGAATTACCGTT
1 ATACCCTCGATTTACAAAATTACCAAT
* * * ***
72349637 TTACCCTCGATTTATAGAATTACTGTT
1 ATACCCTCGATTTACAAAATTACCAAT
* * * ** *
72349664 TTACCCTTGATTTACAGAATTATTATT
1 ATACCCTCGATTTACAAAATTACCAAT
* * *
72349691 TTACCCTCGATTTACAAAATTACTAAC
1 ATACCCTCGATTTACAAAATTACCAAT
* * *
72349718 ATACCCTTGGTTTACAAAATTACCAAA
1 ATACCCTCGATTTACAAAATTACCAAT
* *
72349745 ATACCCTCGA-TCAGCAAAATTACCAAA
1 ATACCCTCGATTTA-CAAAATTACCAAT
* * ** * * *
72349772 ATACCCTAG-TCTGTAAAATTGCTAAA
1 ATACCCTCGATTTACAAAATTACCAAT
* ** *
72349798 ATACCC-CTGGTTTGTAAAATTACCAAA
1 ATACCCTC-GATTTACAAAATTACCAAT
* ** *
72349825 ATACCCTAG-TTTGTAAAATTACCAAA
1 ATACCCTCGATTTACAAAATTACCAAT
* *** * *
72349851 ATACCACT-GGTTTTTGAAATTATCAAA
1 ATACC-CTCGATTTACAAAATTACCAAT
* * ** *
72349878 ATTCCCTCAATTTGTAAAATTACCAAA
1 ATACCCTCGATTTACAAAATTACCAAT
* *
72349905 ATACTCCT-GATTTACAAAATTACAAAA
1 ATAC-CCTCGATTTACAAAATTACCAAT
72349932 ATACCCT
1 ATACCCT
72349939 TGACTTTCTA
Statistics
Matches: 294, Mismatches: 52, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
26 48 0.16
27 243 0.83
28 3 0.01
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (27 bp):
ATACCCTCGATTTACAAAATTACCAAT
Found at i:72349750 original size:81 final size:81
Alignment explanation
Indices: 72349556--72349755 Score: 193
Period size: 81 Copynumber: 2.5 Consensus size: 81
72349546 AATTATTGAA
* ** * *
72349556 ATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGAT
1 ATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGAT
* ***
72349621 TTACAGAATTACCGTT
66 TTACAAAATTACCAAC
* * * ***** * **
72349637 TTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTATTTTACCCTCGAT
1 ATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGAT
*
72349702 TTACAAAATTACTAAC
66 TTACAAAATTACCAAC
* *
72349718 ATACCCTTGGTTTACAAAATTACCAAAATACCCTCGAT
1 ATACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
72349756 CAGCAAAATT
Statistics
Matches: 90, Mismatches: 29, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.36
Consensus pattern (81 bp):
ATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGAT
TTACAAAATTACCAAC
Found at i:72349817 original size:53 final size:53
Alignment explanation
Indices: 72349701--72350020 Score: 248
Period size: 53 Copynumber: 5.9 Consensus size: 53
72349691 TTACCCTCGA
* * * * ** *
72349701 TTTACAAAATTACTAACATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCTGG
* * * * * *
72349754 ATCAGCAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCCTGG
1 TTTA-TAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGG
* *
72349808 TTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCACTGG
1 TTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGG
* * * * * * *
72349861 TTTTTGAAATTATCAAAATTCCCTCAATTTGTAAAATTACCAAAATACTCCTGA
1 TTTATAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATACCCCTGG
* * * * * **
72349915 TTTACAAAATTACAAAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGG
1 TTTATAAAATTACCAAAATACCC-T-AGTTTGT-AAAATTACCA-AAATACCCCTGG
* * * * *
72349971 TTTACAAAATTACTAAAATACCCTTGGTTTGTAGAATTACCAAAACACCC
1 TTTATAAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCC
72350021 TTGTAGGGTG
Statistics
Matches: 211, Mismatches: 49, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
53 83 0.39
54 77 0.36
55 12 0.06
56 39 0.18
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (53 bp):
TTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGG
Found at i:72349817 original size:80 final size:78
Alignment explanation
Indices: 72349706--72349938 Score: 220
Period size: 80 Copynumber: 2.9 Consensus size: 78
72349696 CTCGATTTAC
* * ** *
72349706 AAAATTACTAACATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGCAAAATTACCAA
1 AAAATT-CTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-GATTAGCAAAATTACCAA
72349771 AATACCCTAGTCTGT
64 AATACCCTAGTCTGT
* *
72349786 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAA
1 AAAATT-CTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTGA-TTAGCAAAATTACCAA
* * *
72349850 AATACCACTGGTTTTT
64 AATACC-CTAGTCTGT
* * * ** *
72349866 GAAATTATCAAAAT-TCCCTCAATTTGTAAAATTACCAAAATACTCCTGATTTA-CAAAATTACA
1 AAAATTCT-AAAATACCCCT-GGTTTGTAAAATTACCAAAATAC-CCTGA-TTAGCAAAATTACC
72349929 AAAATACCCT
62 AAAATACCCT
72349939 TGACTTTCTA
Statistics
Matches: 127, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
78 1 0.01
79 24 0.19
80 80 0.63
81 19 0.15
82 3 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (78 bp):
AAAATTCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTGATTAGCAAAATTACCAAAA
TACCCTAGTCTGT
Found at i:72350021 original size:27 final size:27
Alignment explanation
Indices: 72349706--72350023 Score: 241
Period size: 27 Copynumber: 11.8 Consensus size: 27
72349696 CTCGATTTAC
* * **
72349706 AAAATTACTAACATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * ** *
72349733 AAAATTACCAAAATACCCTCGATCAGC
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
72349760 AAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
72349786 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
72349813 AAAATTACCAAAATACCC-TAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
72349839 AAAATTACCAAAATACCAC-TGGTTTTT
1 AAAATTACCAAAATACC-CTTGGTTTGT
* * * ***
72349866 GAAATTATCAAAATTCCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* **
72349893 AAAATTACCAAAATACTCC-TGATTTAC
1 AAAATTACCAAAATAC-CCTTGGTTTGT
* * *
72349920 AAAATTACAAAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCCTTG-GTTTGT
* * **
72349948 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACCA-AAATACCCTTGGTTTGT
*
72349976 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
72350003 AGAATTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
72350024 TAGGGTGAAA
Statistics
Matches: 232, Mismatches: 50, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
26 46 0.20
27 158 0.68
28 11 0.05
29 17 0.07
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:72350965 original size:25 final size:25
Alignment explanation
Indices: 72350927--72351020 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
72350917 AGGAAGTGCT
*
72350927 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
72350952 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
72350977 AAAAGGGCTTTGCCCCAGCTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
72351001 AAAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
72351021 ATTAAAAGAG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 18 0.30
25 42 0.70
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:72351012 original size:24 final size:24
Alignment explanation
Indices: 72350927--72351033 Score: 117
Period size: 25 Copynumber: 4.4 Consensus size: 24
72350917 AGGAAGTGCT
* *
72350927 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TC
* *
72350952 AAAAGGGTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
72350976 GAAAAGGGCTTTGCCCCAGCTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
72351001 AAAAGGGTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
72351024 AAAAGAGGCT
1 AAAAG-GGCT
72351034 AGGCCTCCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
23 9 0.13
24 20 0.29
25 41 0.59
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:72351274 original size:31 final size:31
Alignment explanation
Indices: 72351239--72351379 Score: 228
Period size: 31 Copynumber: 4.5 Consensus size: 31
72351229 TGTTTACAGT
* *
72351239 AAAGGCTTCGGCCCAATGATATGATTTATCA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72351270 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72351301 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
72351332 TAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72351363 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
72351380 AATCGTGAAA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:72351441 original size:25 final size:25
Alignment explanation
Indices: 72351403--72351496 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
72351393 AGGAAGTGCT
*
72351403 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
72351428 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
72351453 AAAAGGGCTTTGCCCCAGCTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
72351477 AAAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
72351497 ATTAAAAGAG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 18 0.30
25 42 0.70
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:72351488 original size:24 final size:24
Alignment explanation
Indices: 72351403--72351509 Score: 117
Period size: 25 Copynumber: 4.4 Consensus size: 24
72351393 AGGAAGTGCT
* *
72351403 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TC
* *
72351428 AAAAGGGTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
72351452 GAAAAGGGCTTTGCCCCAGCTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
72351477 AAAAGGGTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
72351500 AAAAGAGGCT
1 AAAAG-GGCT
72351510 AGGCCTCCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
23 9 0.13
24 20 0.29
25 41 0.59
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:72351713 original size:31 final size:31
Alignment explanation
Indices: 72351678--72351849 Score: 299
Period size: 31 Copynumber: 5.5 Consensus size: 31
72351668 TGTTTACAGT
*
72351678 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72351709 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72351740 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72351771 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
72351802 TAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72351833 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
72351850 AATCGTGAAA
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 136 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:72351911 original size:25 final size:25
Alignment explanation
Indices: 72351873--72351966 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
72351863 AGGAAGTGCT
*
72351873 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
72351898 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
72351923 AAAAGGGCTTTGCCCCAGCTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
72351947 AAAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
72351967 ATTAAAAGAG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 18 0.30
25 42 0.70
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:72351958 original size:24 final size:24
Alignment explanation
Indices: 72351873--72351979 Score: 117
Period size: 25 Copynumber: 4.4 Consensus size: 24
72351863 AGGAAGTGCT
* *
72351873 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TC
* *
72351898 AAAAGGGTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
72351922 GAAAAGGGCTTTGCCCCAGCTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
72351947 AAAAGGGTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
72351970 AAAAGAGGCT
1 AAAAG-GGCT
72351980 AGGCCTCCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
23 9 0.13
24 20 0.29
25 41 0.59
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:72352220 original size:31 final size:31
Alignment explanation
Indices: 72352185--72352325 Score: 228
Period size: 31 Copynumber: 4.5 Consensus size: 31
72352175 TGTTTACAGT
*
72352185 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72352216 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
72352247 TAAGGCTTCGGCCCAGTGATATGATATATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
72352278 TAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
72352309 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
72352326 AACCGTTAAA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 104 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:72352386 original size:93 final size:93
Alignment explanation
Indices: 72352186--72352359 Score: 221
Period size: 93 Copynumber: 1.9 Consensus size: 93
72352176 GTTTACAGTA
* * * * ** *
72352186 AAGGCTTCGGCCCAATGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGATAAG
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGACCCAGTGATACGATTAAACAAAAG
* *
72352251 GCTTCGGCCCAGTGATATGATATATGAT
66 GCTTCGGCCCAGTGATATGAGATATAAT
*
72352279 AAGGCTTCGACCCAGTGATATGATTTATGAAAAGGCTTCGACCCAGT-A-ACCG-TTAAACAAAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGACCCAGTGATA-CGATTAAACAAAA
72352341 GGCTTCGGCCCAGT-ATATG
65 GGCTTCGGCCCAGTGATATG
72352360 CCAAGACTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
90 5 0.07
91 21 0.29
92 2 0.03
93 44 0.61
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (93 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGACCCAGTGATACGATTAAACAAAAG
GCTTCGGCCCAGTGATATGAGATATAAT
Found at i:72354668 original size:27 final size:27
Alignment explanation
Indices: 72354638--72354766 Score: 195
Period size: 27 Copynumber: 4.8 Consensus size: 27
72354628 ATTACTAAAG
* *
72354638 TACCTTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
72354665 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
72354692 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
72354719 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
72354746 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
72354767 TTAAAATACT
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:72354685 original size:54 final size:54
Alignment explanation
Indices: 72354611--72354741 Score: 158
Period size: 54 Copynumber: 2.4 Consensus size: 54
72354601 ATTATTGAAA
*
72354611 TACCCTCGACTTGTA-A-AATTACTAAAGTACCTTCGATTTATAGAATTACCGTTT
1 TACCCTCGA-TT-TACAGAATTACTAAAGTACCCTCGATTTATAGAATTACCGTTT
***** *
72354665 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTAAAGTACCCTCGATTTATAGAATTACCGTTT
*
72354719 TACCCTTGATTTACAGAATTACT
1 TACCCTCGATTTACAGAATTACT
72354742 GTTTTACCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 61 0.92
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTAAAGTACCCTCGATTTATAGAATTACCGTTT
Found at i:72354786 original size:54 final size:54
Alignment explanation
Indices: 72354665--72354795 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
72354655 ATTACCGTTT
* * * ****
72354665 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* *
72354719 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATTAAAA
1 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* * *
72354773 TACTCTTGGTTTACAAAATTACC
1 TACCCTTGATTTACAGAATTACC
72354796 AAAATACCCT
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:72354793 original size:81 final size:82
Alignment explanation
Indices: 72354640--72354794 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 82
72354630 TACTAAAGTA
* * ****
72354640 CCTTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
* *
72354705 TAGAATTACTGTTTTAC
66 CAAAATTACTGTTTTAC
* ** * * *
72354722 CCTT-GATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATTAAAATACTCTTGGTTTA
1 CCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
72354786 CAAAATTAC
66 CAAAATTAC
72354795 CAAAATACCC
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
81 55 0.93
82 4 0.07
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.41
Consensus pattern (82 bp):
CCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTA
CAAAATTACTGTTTTAC
Found at i:72354852 original size:26 final size:26
Alignment explanation
Indices: 72354787--72354992 Score: 209
Period size: 27 Copynumber: 7.7 Consensus size: 26
72354777 CTTGGTTTAC
* **
72354787 AAAATTACCAAAATACCCTTAATCAGT
1 AAAATTACCAAAATACCC-TAGTTTGT
72354814 AAAATTACCAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * *
72354840 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
72354867 AAAATTA-CAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
*
72354893 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACC-CTAGTTTGT
* * * *
72354920 GAAATTACCGAAATACCCTCAATTTTT
1 AAAATTACCAAAATACCCT-AGTTTGT
**
72354947 AAAATTACCAAAATACCCCT-GATTTAC
1 AAAATTACCAAAATA-CCCTAG-TTTGT
*
72354974 AAAATTACAAAAATACCCT
1 AAAATTACCAAAATACCCT
72354993 TGACTTTCTA
Statistics
Matches: 152, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
26 50 0.33
27 98 0.64
28 4 0.03
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:72354869 original size:53 final size:53
Alignment explanation
Indices: 72354787--72354992 Score: 243
Period size: 53 Copynumber: 3.9 Consensus size: 53
72354777 CTTGGTTTAC
* ** **
72354787 AAAATTACCAAAATACCCTTAATCAGTAAAATTACCAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGT
* *
72354840 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTA-CAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTAGTTTGT
* * * * *
72354893 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTTT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-AGTTTGT
* ** *
72354947 AAAATTACCAAAATACCCCTGATTTACAAAATTACAAAAATACCCT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT
72354993 TGACTTTCTA
Statistics
Matches: 129, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
52 7 0.05
53 72 0.56
54 50 0.39
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:72354871 original size:80 final size:81
Alignment explanation
Indices: 72354760--72354966 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 81
72354750 CTCGATTTAC
* * * * *
72354760 AAAATTATTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTTAATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAA
72354825 AATACC-CTAGTTTGT
66 AATACCACTAGTTTGT
* * * **
72354840 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTA-CAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAA
*
72354904 AATACCACTGGTTTGT
66 AATACCACTAGTTTGT
* ** ** *
72354920 GAAATTACCGAAATA-CCCTCAATTTTTAAAATTACCAAAATACCCCT
1 AAAATTACTAAAATACCCCT-GGTTTATAAAATTACCAAAATACCCCT
72354967 GATTTACAAA
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 36 0.34
80 58 0.55
81 12 0.11
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAATCAGTAAAATTACCAA
AATACCACTAGTTTGT
Found at i:72355042 original size:27 final size:27
Alignment explanation
Indices: 72355003--72355054 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
72354993 TGACTTTCTA
72355003 AAAATTATAGAAATAC-CATTGGTTTAC
1 AAAATTATAGAAATACTC-TTGGTTTAC
72355030 AAAATTACT-GAAATACTCTTGGTTT
1 AAAATTA-TAGAAATACTCTTGGTTT
72355055 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACTCTTGGTTTAC
Found at i:72355138 original size:27 final size:27
Alignment explanation
Indices: 72355108--72355168 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
72355098 ACCCTTATTA
*
72355108 GGTAAAAAGACTGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA-CCCCTGTAG
** *
72355135 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAAAGACCGTAATACCCCTGTAG
72355162 GGTAAAA
1 GGTAAAA
72355169 TGGCGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCCTGTAG
Done.