Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 243 of 328
Found at i:72356009 original size:25 final size:25
Alignment explanation
Indices: 72355981--72356045 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
72355971 AGGAAGTGCT
72355981 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
**
72356006 AAAAGGGCTTTGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
72356031 AAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCC
72356046 TAGCTTATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 34 0.94
26 2 0.06
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:72356063 original size:24 final size:25
Alignment explanation
Indices: 72355981--72356065 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
72355971 AGGAAGTGCT
* * *
72355981 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCTAGCTTACCA
* * *
72356006 AAAAGGGCTTTGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGCTTACCA
*
72356031 AAAAGGGCTTTGCCCTAGCTTA-TA
1 AAAAGGGCTTTGCCCTAGCTTACCA
72356055 AAAAGGGCTTT
1 AAAAGGGCTTT
72356066 TCCCCTATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
24 11 0.21
25 40 0.75
26 2 0.04
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGCTTACCA
Found at i:72357689 original size:66 final size:68
Alignment explanation
Indices: 72357613--72357799 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
72357603 TAGTACCACT
*
72357613 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
72357675 CACG
65 CACG
72357679 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
72357744 ATCACG
63 ATCACG
72357750 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
72357800 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:72357724 original size:71 final size:71
Alignment explanation
Indices: 72357636--72357799 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72357626 CGATTTGTCT
72357636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72357701 CTTTCA
66 CTTTCA
72357707 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72357772 CTTTCA
66 CTTTCA
72357778 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72357800 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72357837 original size:71 final size:70
Alignment explanation
Indices: 72357636--72357833 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
72357626 CGATTTGTCT
* * *
72357636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72357701 CTTTCA
65 CTTTCA
* * *
72357707 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72357772 CTTTCA
65 CTTTCA
* *
72357778 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
72357834 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72365288 original size:71 final size:71
Alignment explanation
Indices: 72365200--72365363 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72365190 CCGATTGTCT
72365200 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72365265 CTTTCA
66 CTTTCA
72365271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72365336 CTTTCA
66 CTTTCA
72365342 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72365364 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72365401 original size:71 final size:70
Alignment explanation
Indices: 72365200--72365397 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
72365190 CCGATTGTCT
* * *
72365200 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72365265 CTTTCA
65 CTTTCA
* * *
72365271 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72365336 CTTTCA
65 CTTTCA
* *
72365342 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
72365398 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72372822 original size:66 final size:68
Alignment explanation
Indices: 72372746--72372932 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
72372736 TAGTACCACT
*
72372746 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
72372808 CACG
65 CACG
72372812 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
72372877 ATCACG
63 ATCACG
72372883 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
72372933 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:72372857 original size:71 final size:71
Alignment explanation
Indices: 72372769--72372932 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72372759 CGATTTGTCT
72372769 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72372834 CTTTCA
66 CTTTCA
72372840 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72372905 CTTTCA
66 CTTTCA
72372911 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72372933 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72372970 original size:71 final size:70
Alignment explanation
Indices: 72372769--72372966 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
72372759 CGATTTGTCT
* * *
72372769 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72372834 CTTTCA
65 CTTTCA
* * *
72372840 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72372905 CTTTCA
65 CTTTCA
* *
72372911 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
72372967 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72374425 original size:93 final size:93
Alignment explanation
Indices: 72374313--72374483 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
72374303 GCCCATAAGT
*
72374313 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
72374378 CGAGCTCGGATGCCTAGTTACATCTTTC
66 CGAGCTCGGATGCCTAGTTACATCTTTC
* *
72374406 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
72374471 CGAGTTCGGATGC
66 CGAGCTCGGATGC
72374484 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTTTC
Found at i:72374480 original size:46 final size:46
Alignment explanation
Indices: 72374305--72374480 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
72374295 TGTAACCCGC
*
72374305 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
72374351 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
72374397 ACATCTTTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
72374444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72374481 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 69 0.63
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:72383868 original size:66 final size:68
Alignment explanation
Indices: 72383792--72383978 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
72383782 TAGTACCACT
*
72383792 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
72383854 CACG
65 CACG
72383858 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
72383923 ATCACG
63 ATCACG
72383929 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
72383979 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:72383903 original size:71 final size:71
Alignment explanation
Indices: 72383815--72383978 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72383805 CGATTTGTCT
72383815 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72383880 CTTTCA
66 CTTTCA
72383886 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72383951 CTTTCA
66 CTTTCA
72383957 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72383979 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72384016 original size:71 final size:70
Alignment explanation
Indices: 72383815--72384012 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
72383805 CGATTTGTCT
* * *
72383815 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72383880 CTTTCA
65 CTTTCA
* * *
72383886 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72383951 CTTTCA
65 CTTTCA
* *
72383957 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
72384013 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72385183 original size:38 final size:38
Alignment explanation
Indices: 72385141--72385217 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
72385131 AATTTCATCA
72385141 CGAAATTTTCACACAATCATGCAATCATATCATAAACC
1 CGAAATTTTCACACAATCATGCAATCATATCATAAACC
72385179 CGAAATTTTCACACAATCATGCAATCATATCATAAACC
1 CGAAATTTTCACACAATCATGCAATCATATCATAAACC
72385217 C
1 C
72385218 CAAAATTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.27, G:0.05, T:0.26
Consensus pattern (38 bp):
CGAAATTTTCACACAATCATGCAATCATATCATAAACC
Found at i:72391452 original size:65 final size:68
Alignment explanation
Indices: 72391383--72391568 Score: 272
Period size: 71 Copynumber: 2.7 Consensus size: 68
72391373 TAGTACCACT
*
72391383 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCT-TTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
72391444 CACG
65 CACG
72391448 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
72391513 ATCACG
63 ATCACG
72391519 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
72391569 GATACATCTC
Statistics
Matches: 113, Mismatches: 1, Indels: 8
0.93 0.01 0.07
Matches are distributed among these distances:
65 13 0.12
66 6 0.05
67 1 0.01
68 1 0.01
70 9 0.08
71 83 0.73
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:72391503 original size:71 final size:71
Alignment explanation
Indices: 72391406--72391568 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
72391396 CGATTTGTCT
72391406 CGTAGCTCT-TTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72391470 CTTTCA
66 CTTTCA
72391476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72391541 CTTTCA
66 CTTTCA
72391547 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72391569 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 9 0.10
71 83 0.90
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72391606 original size:71 final size:70
Alignment explanation
Indices: 72391406--72391602 Score: 267
Period size: 71 Copynumber: 2.8 Consensus size: 70
72391396 CGATTTGTCT
* * *
72391406 CGTAGCTCT-TTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72391470 CTTTCA
65 CTTTCA
* * *
72391476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
72391541 CTTTCA
65 CTTTCA
* *
72391547 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
72391603 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 10 0.08
71 86 0.72
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72392897 original size:31 final size:31
Alignment explanation
Indices: 72392859--72392966 Score: 191
Period size: 31 Copynumber: 3.5 Consensus size: 31
72392849 GGTTGTCACA
72392859 TCGGCCCAGTGATATGATTTATGATAAGGCT
1 TCGGCCCAGTGATATGATTTATGATAAGGCT
72392890 TCGGCCCAGTGATATGATTTATGATAAGGCT
1 TCGGCCCAGTGATATGATTTATGATAAGGCT
* *
72392921 TCAGCCCAGTGATATGATTTATGAAAAGGCT
1 TCGGCCCAGTGATATGATTTATGATAAGGCT
72392952 TCGGCCCAGT-ATATG
1 TCGGCCCAGTGATATG
72392967 CCAAGACTAA
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.07
31 69 0.93
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (31 bp):
TCGGCCCAGTGATATGATTTATGATAAGGCT
Found at i:72395625 original size:43 final size:43
Alignment explanation
Indices: 72395577--72395688 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
72395567 TTTGAGATGT
* * *
72395577 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGA
1 GATTACATGTAAGACCATATCTGGGACATTGACATCGATA-TGA
* * *
72395620 GATTACGTGTAAGACCATTTCTGGGACATTGACATCGATATGT
1 GATTACATGTAAGACCATATCTGGGACATTGACATCGATATGA
*
72395663 GATAACATGTAAGACCATATCTGGGA
1 GATTACATGTAAGACCATATCTGGGA
72395689 TACGGCATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 58 0.97
44 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATATCTGGGACATTGACATCGATATGA
Found at i:72409249 original size:40 final size:40
Alignment explanation
Indices: 72409181--72409375 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
72409171 GGATATAGCT
* * * *
72409181 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTA
* * * *
72409221 ACTTGCGCAATTGCCTTTGGGACTTAGCCCAGATT-TAGTA
1 ACTCGCACAATTGCCTTCGGGACTTAGCCC-GGTTATAGTA
*
72409261 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
1 ACTCGCACAATTGCCTTCGGGACTTAGCCCGG-TTATAGTA
* * *
72409301 ACTCACACAATTGCCTTCGGGACTT-GCCCGG-AACTAGTC
1 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* **
72409340 ACTAGTGCAGA-TGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACA-ATTGCCTTCGGGACTTAGCCCGGTTAT
72409376 CATCCAAATA
Statistics
Matches: 127, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
39 30 0.24
40 93 0.73
41 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:72409314 original size:80 final size:79
Alignment explanation
Indices: 72409181--72409374 Score: 228
Period size: 80 Copynumber: 2.4 Consensus size: 79
72409171 GGATATAGCT
* * ** * *
72409181 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTTGCGCAATTGCCTTTGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCACACAATTGCCTTCGGGACTT
**
72409246 AGCCCAGATTTAGTA
66 -GCCCAGAACTAGTA
*
72409261 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCACACAATTGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTAGAGTAACTCACACAATTGCCTTCGGGACT
* *
72409325 TGCCCGGAACTAGTC
65 TGCCCAGAACTAGTA
* ** *
72409340 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGGTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
72409375 TCATCCAAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 2 0.02
79 38 0.39
80 55 0.57
81 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCACACAATTGCCTTCGGGACTT
GCCCAGAACTAGTA
Found at i:72412537 original size:20 final size:20
Alignment explanation
Indices: 72412512--72412550 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
72412502 ACCTGAATGC
72412512 TAGCATTGTGGGAGGAGACG
1 TAGCATTGTGGGAGGAGACG
72412532 TAGCATTGTGGGAGGAGAC
1 TAGCATTGTGGGAGGAGAC
72412551 ATCTTGACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.10, G:0.44, T:0.21
Consensus pattern (20 bp):
TAGCATTGTGGGAGGAGACG
Found at i:72419959 original size:39 final size:40
Alignment explanation
Indices: 72419915--72420079 Score: 183
Period size: 39 Copynumber: 4.2 Consensus size: 40
72419905 CGGAATATAA
*
72419915 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72419954 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72419994 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72420033 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72420072 CCGGATAT
1 CCGGATAT
72420080 CATTCAATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 58 0.55
40 48 0.45
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72420063 original size:79 final size:78
Alignment explanation
Indices: 72419930--72420079 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
72419920 TATAATCAGT
*
72419930 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
72419995 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
72420009 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
72420072 CCGGATAT
64 CCGGATAT
72420080 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:72420922 original size:17 final size:19
Alignment explanation
Indices: 72420899--72420944 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72420889 AAGAAGCATG
72420899 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
72420917 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
72420935 AATCATGCTC
1 AATCATGCTC
72420945 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:72427952 original size:40 final size:40
Alignment explanation
Indices: 72427907--72428072 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72427897 CGGAATATAA
72427907 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72427947 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72427987 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72428026 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72428065 CCGGATAT
1 CCGGATAT
72428073 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 47 0.44
40 60 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72428029 original size:39 final size:38
Alignment explanation
Indices: 72427923--72428034 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 38
72427913 ATAATCACGT
* * *
72427923 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
*
72427963 GCACGAATGCCTTCGGGTCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
72428002 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
72428035 ATTTCCAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.03
39 33 0.51
40 30 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:72428056 original size:79 final size:78
Alignment explanation
Indices: 72427923--72428072 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
72427913 ATAATCACGT
*
72427923 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
72427988 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
72428002 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
72428065 CCGGATAT
64 CCGGATAT
72428073 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:72428915 original size:17 final size:19
Alignment explanation
Indices: 72428892--72428937 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72428882 AAGAAGCATG
72428892 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
72428910 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
72428928 AATCATGCTC
1 AATCATGCTC
72428938 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:72430433 original size:43 final size:43
Alignment explanation
Indices: 72430334--72430630 Score: 515
Period size: 43 Copynumber: 6.9 Consensus size: 43
72430324 ATCTTGCTTN
*
72430334 ACAAAGCCTGCTAGGCTCGAAGGCCCGAATACATATCA-CGGC
1 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
* *
72430376 ACAAAGCCTGCTAGGCTCGAAGACCCGAATACATATCACCGGC
1 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
*
72430419 ACAAAGCCTGCTAGGCACGAAGGCCCCAATACATATCACCGGC
1 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
* * *
72430462 ACAAAGCCTGCTAGGCTCGAAGGACCGAATACATATTACCGGC
1 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
72430505 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
1 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
*
72430548 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACTGGC
1 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
72430591 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACC
1 ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACC
72430631 AGCATGACTG
Statistics
Matches: 241, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 0.15
43 204 0.85
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (43 bp):
ACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGC
Found at i:72430669 original size:40 final size:40
Alignment explanation
Indices: 72430625--72430827 Score: 149
Period size: 40 Copynumber: 5.1 Consensus size: 40
72430615 CCGAATACAT
* * * *
72430625 ATCACCAGCATGACTGCTCTTCGGAACCTGGTCCGGATAC
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
* ** *
72430665 ATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATAT
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
* ** **
72430705 ATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATGT
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
* * * * * * *
72430745 AACACCAGCACGAATGCTCTACGG-ACTTAACCCGGATATAT
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGG--ATAC
* * * * *
72430786 ATCGCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-C
1 ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
72430825 ATC
1 ATC
72430828 GTCGAGACCT
Statistics
Matches: 139, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 12 0.09
40 93 0.67
41 24 0.17
42 10 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ATCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATAC
Found at i:72430808 original size:81 final size:80
Alignment explanation
Indices: 72430623--72430823 Score: 215
Period size: 80 Copynumber: 2.5 Consensus size: 80
72430613 GCCCGAATAC
* * * * * * ** * * * *
72430623 ATATCACCAGCATGACTGCTCTTCGGAACCTGGTCCGGATACATCACTAGCATGAATGCTCTTCG
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCACGAATGCTCTACG
* *
72430688 GGATTTAGCCCGGAT
66 GGACTTAACCCGGAT
* * *
72430703 ATATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATGTAACACCAGCACGAATGCTCTAC-
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCACGAATGCTCTACG
72430767 GGACTTAACCCGGATAT
66 GGACTTAACCCGG--AT
*
72430784 ATATCGCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
72430824 CATCGTCGAG
Statistics
Matches: 100, Mismatches: 19, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 11 0.11
80 51 0.51
81 38 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCAGCACGAATGCTCTACG
GGACTTAACCCGGAT
Found at i:72432919 original size:49 final size:47
Alignment explanation
Indices: 72432745--72433061 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
72432735 CCCTTCGGGA
* * * * * *
72432745 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
72432792 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
72432839 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
72432886 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
72432935 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
72432984 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
72433031 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
72433062 GCGTAAAATC
Statistics
Matches: 248, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
47 158 0.64
48 2 0.01
49 88 0.35
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:72432941 original size:96 final size:94
Alignment explanation
Indices: 72432745--72433061 Score: 483
Period size: 96 Copynumber: 3.3 Consensus size: 94
72432735 CCCTTCGGGA
* * * * * *
72432745 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
72432810 CTTCACATTCATCACATTGGCCATTCGGC
66 CTTCACATTCATCACATCGGCCATTAGGC
*
72432839 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTCGGCCTTATCAC--ATATATA
*
72432903 CACTTTCACATTCATCACATCGGCCATTAGGC
63 CACCTTCACATTCATCACATCGGCCATTAGGC
72432935 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72433000 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
*
72433031 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
72433062 GCGTAAAATC
Statistics
Matches: 204, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
94 58 0.28
95 1 0.00
96 110 0.54
97 2 0.01
98 33 0.16
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:72436548 original size:16 final size:16
Alignment explanation
Indices: 72436529--72436559 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
72436519 GCATTTCTCA
72436529 TTGCCGAATCATATGT
1 TTGCCGAATCATATGT
72436545 TTGCCGAATCATATG
1 TTGCCGAATCATATG
72436560 ATCAAACACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (16 bp):
TTGCCGAATCATATGT
Found at i:72439010 original size:26 final size:26
Alignment explanation
Indices: 72438981--72439033 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
72438971 TCACACAAGT
*
72438981 TAGTCATTT-ACTCACAAGGGGCAAAA
1 TAGTCATTTAACAC-CAAGGGGCAAAA
*
72439007 TAGTCATTTAACACCTAGGGGCAAAA
1 TAGTCATTTAACACCAAGGGGCAAAA
72439033 T
1 T
72439034 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (26 bp):
TAGTCATTTAACACCAAGGGGCAAAA
Found at i:72439065 original size:27 final size:27
Alignment explanation
Indices: 72439035--72439099 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
72439025 GGGCAAAATG
*
72439035 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
** * * *
72439062 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCCACAAGGGTATCTCA
72439089 GTAATTCTACC
1 GTAATTCTACC
72439100 TTATAGGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCCACAAGGGTATCTCA
Found at i:72439100 original size:27 final size:27
Alignment explanation
Indices: 72439052--72439125 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
72439042 TACCCCACAA
*
72439052 GGGTATCTCAGTAATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCTTACAG
* *
72439079 GGGTATTTCGGTAATTCTACCTTATAG
1 GGGTATTTCAGTAATTCTACCTTACAG
*
72439106 GGGTATTTTAGTAATTCTAC
1 GGGTATTTCAGTAATTCTAC
72439126 AACTTATCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCTTACAG
Found at i:72441052 original size:28 final size:28
Alignment explanation
Indices: 72441004--72441071 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
72440994 TTTAAAACCC
* *
72441004 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
72441031 TAGGGGTAATTTCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCAGTAATTTTGCTCTT
72441059 TAGGGGTAATTTC
1 TAGGGGTAATTTC
72441072 GTGATCTACG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.21, C:0.10, G:0.25, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCAGTAATTTTGCTCTT
Found at i:72442721 original size:20 final size:20
Alignment explanation
Indices: 72442698--72442735 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72442688 CACATCCAAA
*
72442698 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
72442718 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
72442736 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:72444989 original size:28 final size:28
Alignment explanation
Indices: 72444943--72445011 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
72444933 TTTAAAACCC
*
72444943 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72444970 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
72444998 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
72445012 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:72446663 original size:20 final size:20
Alignment explanation
Indices: 72446640--72446677 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72446630 CACATCTAAA
*
72446640 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
72446660 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
72446678 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:72460730 original size:40 final size:40
Alignment explanation
Indices: 72460657--72460864 Score: 177
Period size: 40 Copynumber: 5.2 Consensus size: 40
72460647 CAATTGAATG
* * * * * *
72460657 ATATCCGGGCTAAGTCCCAAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * * *
72460697 ATATCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
72460737 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
72460777 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
72460817 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
72460857 ATATCCGG
1 ATATCCGG
72460865 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 5 0.04
40 131 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:72460808 original size:80 final size:80
Alignment explanation
Indices: 72460711--72460864 Score: 222
Period size: 80 Copynumber: 1.9 Consensus size: 80
72460701 CTGGGTTAAG
* *
72460711 ACCCGAAGGCAATTGTGCTAGT-G-ACTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTT
1 ACCCGAAGGCAATTGTGCAAGTCGTACT--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTG
72460774 GTTAAATCCGGGCTAAT
64 GTTAAATCCGGGCTAAT
* * *
72460791 ACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGT
1 ACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGT
*
72460856 TATATCCGG
66 TAAATCCGG
72460865 TTGTATTCCG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 63 0.95
81 1 0.02
82 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGT
TAAATCCGGGCTAAT
Found at i:72471095 original size:40 final size:39
Alignment explanation
Indices: 72470968--72471097 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 39
72470958 CGGAATATAA
* * *
72470968 CCGGATATAATCAAGT-GCACAAATGCCTTTGGGTCTTAGC
1 CCGGATATAA-CAACTAGCAC-AATGCCTTCGGGTCTTAAC
* * *
72471008 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTC-TAAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAA-C
* *
72471048 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAAC
72471088 CCGGATATAA
1 CCGGATATAA
72471098 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
39 7 0.09
40 64 0.86
41 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAAC
Found at i:72471112 original size:40 final size:40
Alignment explanation
Indices: 72470984--72471134 Score: 121
Period size: 40 Copynumber: 3.8 Consensus size: 40
72470974 ATAATCAAGT
* * * * **
72470984 GCACAAATGCCTTTGGGTCTTAGCCCGGATAGAATAACTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAACCAC-CA
* *
72471024 GCACGAA-TGCCTTCGGGTC-TAAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAA-CCCGGATATAACCACCA
***
72471064 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAACCACCA
* * *
72471104 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATAT
72471135 TATTCAATTT
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
39 17 0.19
40 69 0.76
41 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATAACCACCA
Found at i:72486890 original size:24 final size:24
Alignment explanation
Indices: 72486863--72486947 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
72486853 GCGTTTCCTT
72486863 GCACACATAGTGCTATATAATCTC
1 GCACACATAGTGCTATATAATCTC
* * * * *
72486887 GCACACATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCTATATA-ATCTC
** *
72486912 GCACACATAGTGCTGCATAACCTC
1 GCACACATAGTGCTATATAATCTC
*
72486936 GTACACATAGTG
1 GCACACATAGTG
72486948 TTGAAATTTC
Statistics
Matches: 46, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
24 29 0.63
25 17 0.37
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (24 bp):
GCACACATAGTGCTATATAATCTC
Found at i:72494378 original size:24 final size:24
Alignment explanation
Indices: 72494346--72494432 Score: 72
Period size: 24 Copynumber: 3.6 Consensus size: 24
72494336 TTTAAAGGTC
72494346 CGCACACATAGTGCCGTTTTTCCT
1 CGCACACATAGTGCCGTTTTTCCT
*
72494370 CGCACACATACTGCCATGTAGTTTT--T
1 CGCACACATAGTGCC--GT--TTTTCCT
** **
72494396 -GCACACATAGTGCCGCATAACCT
1 CGCACACATAGTGCCGTTTTTCCT
72494419 CGCACACATAGTGC
1 CGCACACATAGTGC
72494433 TGAAATTTCT
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
21 1 0.02
23 2 0.04
24 27 0.54
25 13 0.26
26 3 0.06
28 4 0.08
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.26
Consensus pattern (24 bp):
CGCACACATAGTGCCGTTTTTCCT
Found at i:72497087 original size:43 final size:41
Alignment explanation
Indices: 72497039--72497181 Score: 121
Period size: 40 Copynumber: 3.4 Consensus size: 41
72497029 CAATACCAAC
*
72497039 GTCCCAAACGTGGTCTTATATGCTATCACATATCGATGCCACT
1 GTCCCAAACGTGGTCTTATACG-TATCACATAT-GATGCCACT
* * * * * *
72497082 GTCCCAAAC-AGGTCTTACACGAATAAAATATGATGCCAAT
1 GTCCCAAACGTGGTCTTATACGTATCACATATGATGCCACT
* *
72497122 GTCCC-AACATGGTCTTATACGTAATCACATATAGATACCAAC-
1 GTCCCAAACGTGGTCTTATACGT-ATCACATAT-GATGCC-ACT
* *
72497164 GTCCCAGATGTGGTCTTA
1 GTCCCAAACGTGGTCTTA
72497182 CACGAGAACA
Statistics
Matches: 78, Mismatches: 17, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
39 3 0.04
40 23 0.29
41 14 0.18
42 19 0.24
43 19 0.24
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (41 bp):
GTCCCAAACGTGGTCTTATACGTATCACATATGATGCCACT
Found at i:72503131 original size:40 final size:39
Alignment explanation
Indices: 72503048--72503239 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
72503038 TTGAATGATG
* * * * *
72503048 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
*
72503088 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
72503128 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
72503167 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
72503208 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
72503240 CGTTATATCC
Statistics
Matches: 129, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:72503188 original size:79 final size:81
Alignment explanation
Indices: 72503048--72503239 Score: 241
Period size: 79 Copynumber: 2.4 Consensus size: 81
72503038 TTGAATGATG
* * *
72503048 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
72503112 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
72503128 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
72503191 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
72503208 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
72503240 CGTTATATCC
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:72503263 original size:79 final size:78
Alignment explanation
Indices: 72503048--72503265 Score: 217
Period size: 79 Copynumber: 2.7 Consensus size: 78
72503038 TTGAATGATG
* * *
72503048 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGGA-TAA-ATTCCGAAGGCAT
72503111 TCGTGCGAGTTAATAAA
62 TCGTGCGAGTTAATAAA
* * * * * * *
72503128 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGATAAATTCCGAAGGCATTCG
*
72503193 TGCGAGTTACTATAA
65 TGCGAGTTAATA-AA
** **
72503208 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGATAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGG
72503266 TACGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
79 67 0.59
80 47 0.41
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGATAAATTCCGAAGGCATTCGT
GCGAGTTAATAAA
Found at i:72505259 original size:18 final size:18
Alignment explanation
Indices: 72505236--72505273 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
72505226 AAACCATGCC
*
72505236 AACAATTCCACATCTATG
1 AACAATTCCACATCCATG
72505254 AACAATTCCACATCCATG
1 AACAATTCCACATCCATG
72505272 AA
1 AA
72505274 AGACTATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.29, G:0.05, T:0.24
Consensus pattern (18 bp):
AACAATTCCACATCCATG
Found at i:72506006 original size:48 final size:47
Alignment explanation
Indices: 72505947--72506115 Score: 198
Period size: 48 Copynumber: 3.6 Consensus size: 47
72505937 AAGCTGACAT
* * *
72505947 CATGTCCCAGACAGGTTTTACACTAGCTTGTATATCGCGAAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAAGCCGATG
* ** *
72505995 CATGACCCAGACATGTCTTACACTAGCTTT-CGTCTC-AATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAA-GCCGATG
* * * *
72506041 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAAGCCGATG
72506089 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
72506116 ACACATATCA
Statistics
Matches: 101, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.02
46 36 0.36
47 1 0.01
48 61 0.60
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAAGCCGATG
Found at i:72518883 original size:40 final size:39
Alignment explanation
Indices: 72518718--72518901 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72518708 AAATTGAATG
* * *
72518718 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72518758 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72518798 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72518838 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72518877 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72518902 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72518926 original size:80 final size:81
Alignment explanation
Indices: 72518758--72518946 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72518748 GCTGGAAATT
* * * *
72518758 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72518823 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72518839 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72518902 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72518918 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72518947 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72526985 original size:40 final size:39
Alignment explanation
Indices: 72526820--72527003 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72526810 AAATTGAATG
* * *
72526820 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72526860 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72526900 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72526940 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72526979 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72527004 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72527028 original size:80 final size:81
Alignment explanation
Indices: 72526860--72527048 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72526850 GCTGGAAATT
* * * *
72526860 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72526925 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72526941 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72527004 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72527020 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72527049 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72532764 original size:22 final size:22
Alignment explanation
Indices: 72532739--72532812 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
72532729 GTGTATATAC
72532739 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * **
72532761 GTGATGAATG-TGAATGTGTATATAT
1 GTGAT-AAGGCCGAATG-G-CCA-AT
*
72532786 GTGATAAGGCCGAATGGCCGAT
1 GTGATAAGGCCGAATGGCCAAT
72532808 GTGAT
1 GTGAT
72532813 GGATGTGAAG
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
22 17 0.45
23 4 0.11
24 5 0.13
25 12 0.32
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.27
Consensus pattern (22 bp):
GTGATAAGGCCGAATGGCCAAT
Found at i:72532766 original size:47 final size:47
Alignment explanation
Indices: 72532715--72532887 Score: 274
Period size: 47 Copynumber: 3.7 Consensus size: 47
72532705 ATGATGAAAT
*
72532715 TGATGAATGTGAAAGTGTATATACGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
72532762 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
72532809 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
72532856 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
72532888 TCCCGAAGGG
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 117 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:72532800 original size:25 final size:25
Alignment explanation
Indices: 72532729--72532801 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 25
72532719 GAATGTGAAA
*
72532729 GTGTATATACGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
72532754 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
72532776 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
72532801 G
1 G
72532802 GCCGATGTGA
Statistics
Matches: 34, Mismatches: 9, Indels: 10
0.64 0.17 0.19
Matches are distributed among these distances:
22 11 0.32
23 5 0.15
24 5 0.15
25 13 0.38
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.29
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:72537436 original size:27 final size:28
Alignment explanation
Indices: 72537379--72537448 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
72537369 AAATTTGTAC
**
72537379 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
72537407 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
72537434 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72537449 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:72537457 original size:27 final size:27
Alignment explanation
Indices: 72537379--72537460 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
72537369 AAATTTGTAC
* *
72537379 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
72537407 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
72537434 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
72537461 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:72545513 original size:27 final size:28
Alignment explanation
Indices: 72545456--72545525 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
72545446 AAATTTGTAC
**
72545456 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
72545484 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
72545511 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72545526 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:72545534 original size:27 final size:27
Alignment explanation
Indices: 72545456--72545537 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
72545446 AAATTTGTAC
* *
72545456 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
72545484 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
72545511 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
72545538 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:72548356 original size:40 final size:40
Alignment explanation
Indices: 72548297--72548504 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
72548287 CAATTGAATG
* * * *
72548297 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
72548337 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72548377 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72548417 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72548457 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72548497 ATATCCGG
1 ATATCCGG
72548505 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72548435 original size:80 final size:80
Alignment explanation
Indices: 72548298--72548504 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
72548288 AATTGAATGA
* * ** * * *
72548298 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
72548363 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
72548376 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
72548441 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
72548458 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72548505 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:72556402 original size:40 final size:40
Alignment explanation
Indices: 72556343--72556550 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
72556333 CAATTGAATG
* * * *
72556343 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
72556383 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72556423 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72556463 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72556503 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72556543 ATATCCGG
1 ATATCCGG
72556551 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72556481 original size:80 final size:80
Alignment explanation
Indices: 72556344--72556550 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
72556334 AATTGAATGA
* * ** * * *
72556344 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
72556409 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
72556422 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
72556487 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
72556504 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72556551 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:72564444 original size:24 final size:24
Alignment explanation
Indices: 72564417--72564642 Score: 317
Period size: 24 Copynumber: 9.2 Consensus size: 24
72564407 GGAGGAAGTG
*
72564417 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
72564441 CAAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
* *
72564466 AAAAAAGAGCTTATGCCCCAGTTAT
1 -CAAAAGGGCTTATGCCCCAGTTAT
72564491 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
72564515 TAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
72564539 CAAAAGGGCTTATGCCCTAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
72564564 AAAAAAGGGCTTATGCCCCAGTTAT
1 -CAAAAGGGCTTATGCCCCAGTTAT
72564589 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
72564613 TAAAAGGGCTTTTTCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
72564637 TAAAAG
1 CAAAAG
72564643 ATGCTAGGCC
Statistics
Matches: 184, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
24 138 0.75
25 4 0.02
26 42 0.23
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:72564538 original size:74 final size:72
Alignment explanation
Indices: 72564417--72564642 Score: 326
Period size: 74 Copynumber: 3.1 Consensus size: 72
72564407 GGAGGAAGTG
* *
72564417 CAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGAGCTTATGC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT--AAAAGGGCTTATGC
72564482 CCCAGTTAT
64 CCCAGTTAT
* * *
72564491 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
*
72564556 TAGTTATT
66 CAGTTA-T
* * *
72564564 AAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTTCC
1 -CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCC
72564629 CCAGTTAT
65 CCAGTTAT
*
72564637 TAAAAG
1 CAAAAG
72564643 ATGCTAGGCC
Statistics
Matches: 136, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
72 25 0.18
73 2 0.01
74 109 0.80
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (72 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
CAGTTAT
Found at i:72564587 original size:98 final size:98
Alignment explanation
Indices: 72564418--72564642 Score: 396
Period size: 98 Copynumber: 2.3 Consensus size: 98
72564408 GAGGAAGTGC
72564418 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGAGCTTATGCC
1 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGAGCTTATGCC
72564483 CCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
66 CCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
72564516 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCTAGTTATTAAAAAAGGGCTTATGCC
1 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGAGCTTATGCC
72564581 CCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
66 CCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* * * *
72564614 AAAAGGGCTTTTTCCCCAGTTATTAAAAG
1 AAAAGGGCTTATGCCCTAGTTATCAAAAG
72564643 ATGCTAGGCC
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 121 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (98 bp):
AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGAGCTTATGCC
CCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:72569942 original size:13 final size:13
Alignment explanation
Indices: 72569926--72569960 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
72569916 CTAGACACAC
72569926 ACCCGTGTGTCCT
1 ACCCGTGTGTCCT
*
72569939 ACCCATGTGTCCT
1 ACCCGTGTGTCCT
72569952 ACCCGTGTG
1 ACCCGTGTG
72569961 CTAATTTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.11, C:0.37, G:0.23, T:0.29
Consensus pattern (13 bp):
ACCCGTGTGTCCT
Found at i:72571775 original size:6 final size:6
Alignment explanation
Indices: 72571764--72571842 Score: 81
Period size: 6 Copynumber: 12.8 Consensus size: 6
72571754 TATCAAAACT
*
72571764 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
72571813 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
72571843 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 3 0.05
6 50 0.82
7 6 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:72571776 original size:18 final size:18
Alignment explanation
Indices: 72571755--72571842 Score: 65
Period size: 19 Copynumber: 4.8 Consensus size: 18
72571745 AAGAAACATT
72571755 ATCAAAA-CTAGAATCAGA
1 ATCAAAATC-AGAATCAGA
*
72571773 ATCAGAATCAGAATCAG-
1 ATCAAAATCAGAATCAGA
* *
72571790 GTGACAGAATCAGAATCAGA
1 AT--CAAAATCAGAATCAGA
**
72571810 ATCAGTATCAGGTAA-CAGA
1 ATCAAAATCA-G-AATCAGA
72571829 ATCAAAATCAGAAT
1 ATCAAAATCAGAAT
72571843 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 3 0.05
18 22 0.39
19 29 0.51
20 3 0.05
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (18 bp):
ATCAAAATCAGAATCAGA
Found at i:72571800 original size:31 final size:31
Alignment explanation
Indices: 72571764--72571842 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
72571754 TATCAAAACT
*
72571764 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
72571795 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
72571826 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
72571843 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:72571832 original size:25 final size:24
Alignment explanation
Indices: 72571769--72571815 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
72571759 AAACTAGAAT
72571769 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCA-GTGA
72571794 CAGAATCAGAATCAGAATCAGT
1 CAGAATCAGAATCAGAATCAGT
72571816 ATCAGGTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (24 bp):
CAGAATCAGAATCAGAATCAGTGA
Found at i:72572255 original size:27 final size:27
Alignment explanation
Indices: 72572225--72572420 Score: 313
Period size: 27 Copynumber: 7.3 Consensus size: 27
72572215 GGGGCAAAAT
* *
72572225 GGTAATTTTA-CCTCACAAGGGTATCTC
1 GGTAATTCTACCCT-ACAAGGGTATTTC
72572252 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72572279 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72572306 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
72572333 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72572360 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72572387 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72572414 GATAATT
1 GGTAATT
72572421 TCACAAATTA
Statistics
Matches: 159, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 156 0.98
28 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72572476 original size:27 final size:27
Alignment explanation
Indices: 72572405--72572530 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 27
72572395 TACCCTACAA
* * * **
72572405 GGGTATTTCGATAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
72572432 AGGTATTGTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*** *
72572459 GGGTATTTTGGTAATTTTATTGATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
72572485 AGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACCAG
*
72572513 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
72572531 TTAAATCGAG
Statistics
Matches: 78, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 1 0.01
27 77 0.99
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:72572535 original size:27 final size:27
Alignment explanation
Indices: 72572433--72572571 Score: 109
Period size: 27 Copynumber: 5.1 Consensus size: 27
72572423 ACAAATTAGA
* ** *
72572433 GGTATTGTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTTTAAACCAAG
* * *
72572460 GGTATTTTGGTAATTTTATT-GATCGAG
1 GGTATTTTGGTAATTTT-TTAAACCAAG
*
72572487 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTTTAAACCAAG
* * *
72572514 GGTATTTTAGTAATTTTTTAAATCGAG
1 GGTATTTTGGTAATTTTTTAAACCAAG
*** * * *
72572541 GGTAAAATGGTAATTTTGTAAATCGAG
1 GGTATTTTGGTAATTTTTTAAACCAAG
72572568 GGTA
1 GGTA
72572572 AAATGGTAAT
Statistics
Matches: 90, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 89 0.99
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTTTAAACCAAG
Found at i:72572552 original size:54 final size:54
Alignment explanation
Indices: 72572440--72572609 Score: 180
Period size: 54 Copynumber: 3.1 Consensus size: 54
72572430 AGAGGTATTG
** * * ***
72572440 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATT-GATCGAGGGTATTT
1 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTT-TTAAATCGAGGGTAAAA
*
72572494 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTTTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTTTAAATCGAGGGTAAAA
* * *** * *
72572548 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTTTAAATCGAGGGTAAAA
*
72572602 CGGTAATT
1 TGGTAATT
72572610 CTATAAATTA
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
53 2 0.02
54 96 0.98
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (54 bp):
TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTTTAAATCGAGGGTAAAA
Found at i:72572572 original size:27 final size:27
Alignment explanation
Indices: 72572467--72572636 Score: 169
Period size: 27 Copynumber: 6.3 Consensus size: 27
72572457 AGGGGTATTT
* ** ***
72572467 TGGTAATTTTATTGATCGAGGGTATTT
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* * ***
72572494 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* *
72572521 TAGTAATTTTTTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
72572548 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
72572575 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* * * **
72572602 CGGTAATTCTATAAATTAAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
72572629 TGGTAATT
1 TGGTAATT
72572637 CTGGGTAAAA
Statistics
Matches: 123, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (27 bp):
TGGTAATTTTGTAAATCGAGGGTAAAA
Found at i:72572637 original size:27 final size:27
Alignment explanation
Indices: 72572523--72572639 Score: 171
Period size: 27 Copynumber: 4.3 Consensus size: 27
72572513 GGGTATTTTA
* *
72572523 GTAATTTTTTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
72572550 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
72572577 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* **
72572604 GTAATTCTATAAATTAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
72572631 GTAATTCTG
1 GTAATTCTG
72572640 GGTAAAATGG
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:72572642 original size:18 final size:18
Alignment explanation
Indices: 72572621--72572656 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
72572611 TATAAATTAA
72572621 GGGTAAAATGGTAATTCT
1 GGGTAAAATGGTAATTCT
72572639 GGGTAAAATGGTAATTCT
1 GGGTAAAATGGTAATTCT
72572657 ATCTTATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (18 bp):
GGGTAAAATGGTAATTCT
Found at i:72572691 original size:27 final size:27
Alignment explanation
Indices: 72572661--72572755 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
72572651 AATTCTATCT
*
72572661 TATTTCAGTAATTTTACAAATCAAGGA
1 TATTTCAGTAATTTTACAAATCAAGGG
** * **
72572688 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCAGTAATTTTACAAATCAAGGG
* *
72572715 TACTTT-GGTAATTTTACAAGTCAAGGG
1 TA-TTTCAGTAATTTTACAAATCAAGGG
72572742 TATTTCAGTAATTT
1 TATTTCAGTAATTT
72572756 GGTAAACTAA
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
26 3 0.05
27 49 0.89
28 3 0.05
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAATCAAGGG
Found at i:72574723 original size:6 final size:6
Alignment explanation
Indices: 72574705--72574786 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
72574695 AAGAAACATT
* * *
72574705 ATCAGA A-CTAGA ATCAGA ATAAGA ATCAG- GTGACAGA ATCAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* *
72574754 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCTGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
72574787 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
5 4 0.07
6 46 0.78
7 7 0.12
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:72574749 original size:31 final size:31
Alignment explanation
Indices: 72574689--72574786 Score: 101
Period size: 31 Copynumber: 3.2 Consensus size: 31
72574679 TAACCCATTA
* * *
72574689 CAGAATAAGAAACA-TTATCAGAA-CTAGAAT
1 CAGAATAAGAATCAGGTAACAGAATC-AGAAT
*
72574719 CAGAATAAGAATCAGGTGACAGAATCAGAAT
1 CAGAATAAGAATCAGGTAACAGAATCAGAAT
* * *
72574750 CAAAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAATAAGAATCAGGTAACAGAATCAGAAT
*
72574781 CTGAAT
1 CAGAAT
72574787 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
30 13 0.23
31 42 0.75
32 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (31 bp):
CAGAATAAGAATCAGGTAACAGAATCAGAAT
Found at i:72575289 original size:54 final size:54
Alignment explanation
Indices: 72575168--72575302 Score: 207
Period size: 54 Copynumber: 2.5 Consensus size: 54
72575158 GGGGCAAAAT
* * * * *
72575168 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAAGAGTATTTC
* *
72575222 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAAGAGTATTTC
72575276 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTC
72575303 GATAATTTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAAGAGTATTTC
Found at i:72575303 original size:27 final size:27
Alignment explanation
Indices: 72575168--72575309 Score: 176
Period size: 27 Copynumber: 5.3 Consensus size: 27
72575158 GGGGCAAAAT
* * *
72575168 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72575195 AGTAATTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72575222 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72575249 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72575276 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72575303 GATAATT
1 GGTAATT
72575310 TCACAAATCA
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72575323 original size:81 final size:81
Alignment explanation
Indices: 72575169--72575336 Score: 205
Period size: 81 Copynumber: 2.1 Consensus size: 81
72575159 GGGCAAAATG
* *
72575169 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGAGTATTTCGGTAATTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGAGTATTTCGATAATTCTACC
**
72575234 CTATAGGGGTATTTTA
66 AAATAGGGGTATTTTA
* * * * * *
72575250 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGATAATT-T-CA
1 GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGAGTATTTCGATAATTCTAC-
*
72575313 CAAATCAGGGGTATTTTG
65 CAAAT-AGGGGTATTTTA
72575331 GTAATT
1 GTAATT
72575337 TTACAAACTA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 4 0.05
81 69 0.93
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGAGTATTTCGATAATTCTACC
AAATAGGGGTATTTTA
Found at i:72575325 original size:54 final size:54
Alignment explanation
Indices: 72575168--72575336 Score: 164
Period size: 54 Copynumber: 3.1 Consensus size: 54
72575158 GGGGCAAAAT
* * * * * * ** *
72575168 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTGAGTAATTCTACAATACAAGGGTATTTC
* **
72575222 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTGAGTAATTCTACAATACAAGGGTATTTC
* *
72575276 GGTAATTCTACCCTATAGGGGTATTTCGA-TAATT-TCACAA-ATCAGGGGTATTTT
1 GGTAATTCTACCCTATAGGGGTATTT-GAGTAATTCT-ACAATA-CAAGGGTATTTC
72575330 GGTAATT
1 GGTAATT
72575337 TTACAAACTA
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 2 0.02
54 97 0.97
55 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTATAGGGGTATTTGAGTAATTCTACAATACAAGGGTATTTC
Found at i:72575349 original size:54 final size:54
Alignment explanation
Indices: 72575291--72575433 Score: 137
Period size: 54 Copynumber: 2.6 Consensus size: 54
72575281 TTCTACCCTA
72575291 TAGGGGTATTTCGATAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTCGATAATTTCACAAATCGA-GGGTATTTTGGTAATTTTACAAAC
* * * *** **
72575345 TAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 TAGGGGTATTTCGATAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* * ***
72575399 CAAGGGTATTTC-AGTAATTTTGTAAATCGAGGGTA
1 TAGGGGTATTTCGA-TAATTTCACAAATCGAGGGTA
72575434 AAATGGTAAT
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
54 71 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.40
Consensus pattern (54 bp):
TAGGGGTATTTCGATAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:72575365 original size:27 final size:26
Alignment explanation
Indices: 72575267--72575392 Score: 117
Period size: 27 Copynumber: 4.7 Consensus size: 26
72575257 TACCCTACAA
* * **
72575267 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTTGGTAATTTTA-CAAATAG
* * *
72575294 GGGTATTTCGATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAAT-AG
72575321 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
*** *
72575348 GGGTATTTTGGTAATTTTATTGATCG
1 GGGTATTTTGGTAATTTTACAAATAG
72575374 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGGTAATTTT
72575393 GTAAACCAAG
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.06
27 78 0.93
28 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAG
Found at i:72575404 original size:27 final size:27
Alignment explanation
Indices: 72575321--72575513 Score: 138
Period size: 27 Copynumber: 7.1 Consensus size: 27
72575311 CACAAATCAG
** *
72575321 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTGTAAATCGA
* **
72575347 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTATTTTGGTAATTTTGTAAATCGA
* *
72575375 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGTAAATCGA
**
72575402 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
*** *
72575429 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
*** * *
72575456 GGGTAAAGTGATAATTCTT-TAAATTGA
1 GGGTATTTTGGTAATT-TTGTAAATCGA
**** *
72575483 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAATCGA
72575510 GGGT
1 GGGT
72575514 CAAATGGTAA
Statistics
Matches: 135, Mismatches: 28, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.97
28 3 0.02
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAATCGA
Found at i:72575522 original size:27 final size:27
Alignment explanation
Indices: 72575412--72575527 Score: 169
Period size: 27 Copynumber: 4.3 Consensus size: 27
72575402 GGGTATTTCA
*
72575412 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
72575439 GTAATTCTGTAAATCGAGGGTAAAGTG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * * *
72575466 ATAATTCTTTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
72575493 GTAATTCTGTAAATCGAGGGTCAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
72575520 GTAATTCT
1 GTAATTCT
72575528 ATCTTATTTC
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:72575613 original size:27 final size:27
Alignment explanation
Indices: 72575532--72575617 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
72575522 AATTCTATCT
* *
72575532 TATTTCGGTAATTTTACAAATCGAGGA
1 TATTTGGGTAATTTTACAAATCGAGGG
* *
72575559 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTGGGTAATTTTACAAATCGAGGG
* *
72575586 TACTTT-GGTAATTTTACAAGTCAAGGG
1 TA-TTTGGGTAATTTTACAAATCGAGGG
72575613 TATTT
1 TATTT
72575618 CAATAATTTG
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.06
27 44 0.88
28 3 0.06
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TATTTGGGTAATTTTACAAATCGAGGG
Found at i:72584328 original size:40 final size:40
Alignment explanation
Indices: 72584254--72584425 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
72584244 GATAATCGGA
* * * *
72584254 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
* * * *
72584294 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATATCCGGG
* *
72584334 CTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATTCGGG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
*
72584374 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
72584413 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
72584426 ATACTTGGGT
Statistics
Matches: 113, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 95 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGG
Found at i:72584387 original size:80 final size:79
Alignment explanation
Indices: 72584254--72584425 Score: 231
Period size: 80 Copynumber: 2.2 Consensus size: 79
72584244 GATAATCGGA
* * * * *
72584254 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTCGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
72584319 G-TGATTATATCCGGG
66 GTTG-TTATATCC-GG
* * *
72584334 CTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATTCGGGCTAAGACCCGAAGGCATTTGTGCGA
1 CTAAGACCCGAAGGCATTCGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
72584399 GTTGTTATATCCGG
66 GTTGTTATATCCGG
72584413 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
72584426 ATACTTGGGT
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.16
80 66 0.80
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
CTAAGACCCGAAGGCATTCGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGA
GTTGTTATATCCGG
Found at i:72584693 original size:22 final size:22
Alignment explanation
Indices: 72584653--72584694 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
72584643 GAATGTGCAT
*
72584653 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
72584675 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
72584695 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:72587989 original size:93 final size:93
Alignment explanation
Indices: 72587830--72588001 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
72587820 CGCCCATAAG
* * *
72587830 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72587895 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
72587923 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72587988 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72588002 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72587998 original size:46 final size:46
Alignment explanation
Indices: 72587823--72587998 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
72587813 TGTAACCCGC
* * * *
72587823 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
72587869 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
72587919 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
72587962 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72587999 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:72590402 original size:15 final size:15
Alignment explanation
Indices: 72590373--72590422 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
72590363 CAAAGATAAC
*
72590373 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72590387 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72590402 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72590417 AAGAAA
1 AAGAAA
72590423 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72590431 original size:15 final size:15
Alignment explanation
Indices: 72590384--72590431 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
72590374 AGAAAACCGA
72590384 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
72590398 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72590414 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72590429 ATA
1 ATA
72590432 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72593516 original size:93 final size:92
Alignment explanation
Indices: 72593358--72593528 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 92
72593348 CGCCCATAAG
* * *
72593358 CGAACTCAGACTCAACTCAACGAGCTGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 CGAACTCAGACTCAACTCAACGAGCTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72593423 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
* *
72593450 CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
72593515 ACGAGTTTGGATGC
65 ACGAGTTCGGATGC
72593529 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 25 0.35
93 47 0.65
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCAGACTCAACTCAACGAGCTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72593544 original size:46 final size:45
Alignment explanation
Indices: 72593401--72593544 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 45
72593391 CGCATCCATG
72593401 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
72593448 CA-CGAACTCAGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
*
72593494 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
72593540 AGTGA
1 AGTGA
72593545 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 31 0.41
47 30 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:72601100 original size:9 final size:9
Alignment explanation
Indices: 72601086--72601391 Score: 290
Period size: 9 Copynumber: 34.6 Consensus size: 9
72601076 TGATATTTAT
*
72601086 TTATGTTAG
1 TTATGTAAG
*
72601095 TTATGTAAA
1 TTATGTAAG
*
72601104 TAATGTAAG
1 TTATGTAAG
* *
72601113 TTATGAAAA
1 TTATGTAAG
72601122 TTATGTAAG
1 TTATGTAAG
72601131 TTATGTAAG
1 TTATGTAAG
*
72601140 TTATGTAAA
1 TTATGTAAG
72601149 TTATGTAA-
1 TTATGTAAG
72601157 TTATGTAAG
1 TTATGTAAG
72601166 TTATGTGAA-
1 TTATGT-AAG
*
72601175 TTATGTATG
1 TTATGTAAG
72601184 TTATGTAAG
1 TTATGTAAG
*
72601193 TTATG-ACAT
1 TTATGTA-AG
*
72601202 TTATGATATG
1 TTATG-TAAG
* * *
72601212 ATATAT-AT
1 TTATGTAAG
72601220 TTATGT-A-
1 TTATGTAAG
72601227 TTATGT-A-
1 TTATGTAAG
72601234 TTATGTAAG
1 TTATGTAAG
72601243 TTATGTAAG
1 TTATGTAAG
*
72601252 TTATGTAAA
1 TTATGTAAG
*
72601261 TTATGTAAA
1 TTATGTAAG
72601270 TTATGTAAG
1 TTATGTAAG
*
72601279 TTATGTAAA
1 TTATGTAAG
72601288 TTATGTAAG
1 TTATGTAAG
72601297 TTATGTAAG
1 TTATGTAAG
72601306 TTATGTAAG
1 TTATGTAAG
72601315 TTATGTAAG
1 TTATGTAAG
*
72601324 TTA-GGATA-
1 TTATGTA-AG
* * *
72601332 TAATTTATAT
1 TTATGTA-AG
*
72601342 TTATATAAG
1 TTATGTAAG
72601351 TTATGTAAG
1 TTATGTAAG
*
72601360 TTATGTATG
1 TTATGTAAG
*
72601369 TTATGTGAG
1 TTATGTAAG
*
72601378 GTATGTAAG
1 TTATGTAAG
72601387 TTATG
1 TTATG
72601392 ATATGATATA
Statistics
Matches: 247, Mismatches: 39, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
7 13 0.05
8 20 0.08
9 203 0.82
10 10 0.04
11 1 0.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:72601412 original size:27 final size:27
Alignment explanation
Indices: 72601355--72601413 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
72601345 TATAAGTTAT
* * *
72601355 GTAAGTTATGTATGTTATGTGAGGTAT
1 GTAAGTTATGTATGATATATGAGGTAG
*
72601382 GTAAGTTATGATATGATATAT-ATGTAG
1 GTAAGTTATG-TATGATATATGAGGTAG
72601409 GTAAG
1 GTAAG
72601414 GTATATGAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.32, C:0.00, G:0.27, T:0.41
Consensus pattern (27 bp):
GTAAGTTATGTATGATATATGAGGTAG
Found at i:72601419 original size:72 final size:70
Alignment explanation
Indices: 72601275--72601430 Score: 163
Period size: 72 Copynumber: 2.2 Consensus size: 70
72601265 GTAAATTATG
* *
72601275 TAAGTTATGTAAATTATGTAAGTTATGTAAGTTATGTAAGTTATGTAAGTTAGGATATAATTTAT
1 TAAGTTATGTAAATTATGTAAGTTATGTAAGGTATGTAAGTTATG-AAG-TAGGATATAATGTAT
**
72601340 ATTTATA
64 AGGTATA
* * * *
72601347 TAAGTTATGTAAGTTATGTATGTTATGTGAGGTATGTAAGTTATG-A-TATGATATATATGTAGG
1 TAAGTTATGTAAATTATGTAAGTTATGTAAGGTATGTAAGTTATGAAGTAGGATATA-ATGTA--
72601410 TAAGGTATA
63 T-AGGTATA
*
72601419 TGAGTTATGTAA
1 TAAGTTATGTAA
72601431 TTTTAAAGAA
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
68 8 0.11
69 4 0.06
70 1 0.01
71 1 0.01
72 57 0.80
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (70 bp):
TAAGTTATGTAAATTATGTAAGTTATGTAAGGTATGTAAGTTATGAAGTAGGATATAATGTATAG
GTATA
Found at i:72601425 original size:63 final size:63
Alignment explanation
Indices: 72601293--72601430 Score: 168
Period size: 63 Copynumber: 2.2 Consensus size: 63
72601283 GTAAATTATG
* * * * * *
72601293 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTAGGATATAATTTATATTTATATAAGTTATG
1 TAAGTTATGTAAGTTATGTAAGGTATGTAAGTTAGGATATAATATATATGTAGATAAGGTATA
* * * * *
72601356 TAAGTTATGTATGTTATGTGAGGTATGTAAGTTATGATATGATATATATGTAGGTAAGGTATA
1 TAAGTTATGTAAGTTATGTAAGGTATGTAAGTTAGGATATAATATATATGTAGATAAGGTATA
*
72601419 TGAGTTATGTAA
1 TAAGTTATGTAA
72601431 TTTTAAAGAA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (63 bp):
TAAGTTATGTAAGTTATGTAAGGTATGTAAGTTAGGATATAATATATATGTAGATAAGGTATA
Found at i:72601920 original size:5 final size:5
Alignment explanation
Indices: 72601910--72601968 Score: 109
Period size: 5 Copynumber: 11.6 Consensus size: 5
72601900 CTGCCCTATG
72601910 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT
72601961 AAAAT AAA
1 AAAAT AAA
72601969 GAACAAACAA
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 48 0.91
6 5 0.09
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:72604578 original size:25 final size:25
Alignment explanation
Indices: 72604549--72604596 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72604539 TTATAATATG
* * *
72604549 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72604574 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72604597 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72604665 original size:20 final size:20
Alignment explanation
Indices: 72604640--72604698 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
72604630 TAAATATGGT
72604640 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
72604660 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
72604680 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72604699 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72604680 original size:11 final size:11
Alignment explanation
Indices: 72604644--72604698 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72604634 TATGGTATGT
72604644 ATGATATGCAC
1 ATGATATGCAC
* *
72604655 ATGAAATG--T
1 ATGATATGCAC
72604664 ATGATATGCAC
1 ATGATATGCAC
*
72604675 ATGATATG--T
1 ATGATATGCAC
72604684 ATGATATGCAC
1 ATGATATGCAC
72604695 ATGA
1 ATGA
72604699 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72604779 original size:23 final size:24
Alignment explanation
Indices: 72604749--72604842 Score: 131
Period size: 23 Copynumber: 4.0 Consensus size: 24
72604739 GAGGAAGTGA
72604749 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
72604772 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
72604796 GAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
72604819 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72604843 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
23 40 0.62
24 16 0.25
25 8 0.12
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:72604822 original size:47 final size:48
Alignment explanation
Indices: 72604750--72604842 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 48
72604740 AGGAAGTGAA
*
72604750 AAAGGGCTTATGCCCCAGTTATAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATAAAAGAGGC-TAGGCCTCCAGTTATTG
72604797 AAAGGGCTT-TGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGAGGCTAGGCCTCCAGTTAT
72604843 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
46 11 0.26
47 20 0.48
48 11 0.26
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (48 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:72612638 original size:25 final size:25
Alignment explanation
Indices: 72612609--72612656 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72612599 TTATAATATG
* * *
72612609 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72612634 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72612657 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72612725 original size:20 final size:20
Alignment explanation
Indices: 72612700--72612758 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
72612690 TAAATATGGT
72612700 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
72612720 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
72612740 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72612759 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72612740 original size:11 final size:11
Alignment explanation
Indices: 72612704--72612758 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72612694 TATGGTATGT
72612704 ATGATATGCAC
1 ATGATATGCAC
* *
72612715 ATGAAATG--T
1 ATGATATGCAC
72612724 ATGATATGCAC
1 ATGATATGCAC
*
72612735 ATGATATG--T
1 ATGATATGCAC
72612744 ATGATATGCAC
1 ATGATATGCAC
72612755 ATGA
1 ATGA
72612759 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Done.