Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 244 of 328
Found at i:72612836 original size:24 final size:24
Alignment explanation
Indices: 72612809--72612927 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
72612799 GAGGAAGTGA
*
72612809 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
72612833 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
72612856 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
72612880 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
72612904 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72612928 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:72612878 original size:47 final size:48
Alignment explanation
Indices: 72612809--72612927 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
72612799 GAGGAAGTGA
72612809 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
72612856 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
72612904 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72612928 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:72620504 original size:24 final size:24
Alignment explanation
Indices: 72620472--72620700 Score: 354
Period size: 24 Copynumber: 9.6 Consensus size: 24
72620462 TATCTCAAAT
72620472 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72620496 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
72620520 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72620544 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72620568 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
72620592 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
72620616 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
72620640 GCACTA--TGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
72620662 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
72620686 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
72620701 ACATAATAAG
Statistics
Matches: 195, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
22 21 0.11
24 174 0.89
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:72627164 original size:40 final size:40
Alignment explanation
Indices: 72627090--72627235 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
72627080 CCGCACCAAG
* * * * * *
72627090 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
72627130 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
72627170 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
72627210 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
72627236 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:72627250 original size:40 final size:40
Alignment explanation
Indices: 72627122--72627273 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
72627112 ATCACGATTT
* * * * *
72627122 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
72627162 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
72627202 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
72627242 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
72627274 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:72635269 original size:40 final size:40
Alignment explanation
Indices: 72635195--72635340 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
72635185 CCGCACCAAG
* * * * * *
72635195 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
72635235 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
72635275 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
72635315 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
72635341 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:72635355 original size:40 final size:40
Alignment explanation
Indices: 72635227--72635378 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
72635217 ATCACGATTT
* * * * *
72635227 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
72635267 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
72635307 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
72635347 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
72635379 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:72642270 original size:49 final size:49
Alignment explanation
Indices: 72642209--72642564 Score: 549
Period size: 49 Copynumber: 7.3 Consensus size: 49
72642199 ATGTATGAGA
*
72642209 TATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
72642258 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
72642307 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
72642356 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
72642405 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
72642454 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
72642503 --TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
72642550 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
72642565 TCCCGAAGGG
Statistics
Matches: 286, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 50 0.17
48 1 0.00
49 235 0.82
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:72644552 original size:47 final size:47
Alignment explanation
Indices: 72644501--72644672 Score: 238
Period size: 47 Copynumber: 3.7 Consensus size: 47
72644491 GATTTTATGA
**
72644501 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
*
72644548 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATTT
1 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
* * * * * *
72644595 GATAAACGTGGAA-GTGTATATATGTGATAAGGTCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
*
72644642 GATGAATGTAAACATGCATATGTGTGATAAG
1 GATGAATGTGAACATGCATATGTGTGATAAG
72644673 CCAATGTGAT
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
46 2 0.02
47 102 0.95
48 3 0.03
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
Found at i:72644643 original size:22 final size:22
Alignment explanation
Indices: 72644523--72644644 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
72644513 CATGCATATG
*
72644523 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
*
72644545 TGTGATGAATGT-GAACAT-G-CATA
1 TGTGAT-AAGGTCG-A-ATGGCCA-A
*
72644568 TGTGTGATAAGGTAGAATGGCCAA
1 --TGTGATAAGGTCGAATGGCCAA
* * * ***
72644592 TTTGATAAACGTGGAAGTGTATATA
1 TGTGAT-AAGGTCGAA-TGGCCA-A
72644617 TGTGATAAGGTCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
72644639 TGTGAT
1 TGTGAT
72644645 GAATGTAAAC
Statistics
Matches: 73, Mismatches: 15, Indels: 24
0.65 0.13 0.21
Matches are distributed among these distances:
22 21 0.29
23 18 0.25
24 19 0.26
25 15 0.21
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGCCAA
Found at i:72644685 original size:38 final size:38
Alignment explanation
Indices: 72644634--72644710 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
72644624 AGGTCGAATG
72644634 GCCAATGTGATGAATGTAAACATGCATATGTGTGATAA
1 GCCAATGTGATGAATGTAAACATGCATATGTGTGATAA
*
72644672 GCCAATGTGATGAATGTGAACATGCATATGTGTGATAA
1 GCCAATGTGATGAATGTAAACATGCATATGTGTGATAA
72644710 G
1 G
72644711 GTAGAATGGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (38 bp):
GCCAATGTGATGAATGTAAACATGCATATGTGTGATAA
Found at i:72652694 original size:20 final size:20
Alignment explanation
Indices: 72652671--72652708 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72652661 AGTGCGAATA
72652671 GAGGCAT-GAATGTGCAATTG
1 GAGGCATCGAA-GTGCAATTG
72652691 GAGGCATCGAAGTGCAAT
1 GAGGCATCGAAGTGCAAT
72652709 CTCGTACAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (20 bp):
GAGGCATCGAAGTGCAATTG
Found at i:72659639 original size:12 final size:12
Alignment explanation
Indices: 72659622--72659646 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72659612 CATACAAGCG
72659622 CGCATTCTAACC
1 CGCATTCTAACC
72659634 CGCATTCTAACC
1 CGCATTCTAACC
72659646 C
1 C
72659647 TATTAGCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.44, G:0.08, T:0.24
Consensus pattern (12 bp):
CGCATTCTAACC
Found at i:72660396 original size:18 final size:19
Alignment explanation
Indices: 72660354--72660396 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
72660344 CTATTTAGCT
*
72660354 ATCAAACTTATAAATCATC
1 ATCAAACTTATAAACCATC
72660373 ATCAAACTT-TAAAACCATC
1 ATCAAACTTAT-AAACCATC
72660392 A-CAAA
1 ATCAAA
72660397 TTCATGAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (19 bp):
ATCAAACTTATAAACCATC
Found at i:72663034 original size:40 final size:40
Alignment explanation
Indices: 72662951--72663052 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 40
72662941 TAGTGGCTAC
* * **
72662951 ATCCGGGCTAAGACCCGAAGGCATACGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATACGTGCAAATCATGAT
* ** *
72662991 ATCCGGGCTAAGACCCGAATGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATACGTGCAAATCATGAT
* * *
72663031 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
72663053 CTTGGTGCGG
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATACGTGCAAATCATGAT
Found at i:72672740 original size:27 final size:26
Alignment explanation
Indices: 72672694--72672896 Score: 201
Period size: 27 Copynumber: 7.6 Consensus size: 26
72672684 GTTTACCAAT
*
72672694 TTACGAAAATACCCTAGTTTGTAAAA
1 TTACCAAAATACCCTAGTTTGTAAAA
* * *
72672720 TTACTAAAATACCCATGGTTTATAAAA
1 TTACCAAAATACCC-TAGTTTGTAAAA
*
72672747 TCACCAAAATACACCTAGTTTGTAAAA
1 TTACCAAAATAC-CCTAGTTTGTAAAA
* **
72672774 TTACCAAAATACCCTTGGTTTACAAAA
1 TTACCAAAATACCC-TAGTTTGTAAAA
72672801 TTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATA-CCCTAGTTTGTAAAA
*
72672828 TTACCAAAATACCCCT-GATTTGTGAAA
1 TTACCAAAATA-CCCTAG-TTTGTAAAA
** * **
72672855 TTACTGAAATACCCTCGACCTGTAAAA
1 TTACCAAAATACCCTAG-TTTGTAAAA
*
72672882 TTACCAAAGTACCCT
1 TTACCAAAATACCCT
72672897 TAATTTATAG
Statistics
Matches: 148, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
26 20 0.14
27 123 0.83
28 5 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (26 bp):
TTACCAAAATACCCTAGTTTGTAAAA
Found at i:72672856 original size:54 final size:53
Alignment explanation
Indices: 72672694--72672913 Score: 242
Period size: 54 Copynumber: 4.1 Consensus size: 53
72672684 GTTTACCAAT
* *
72672694 TTACGAAAATACCCTAGTTTGTAAAATTACTAAAATACCCATGGTTTATAAAA
1 TTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCATGGTTTATAAAA
* * *
72672747 TCACCAAAATACACCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAA
1 TTACCAAAATAC-CCTAGTTTGTAAAATTACCAAAATACCCATGGTTTATAAAA
* * * *
72672801 TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAA
1 TTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCATGGTTTATAAAA
** * ** * * ** *
72672855 TTACTGAAATACCCTCGACCTGTAAAATTACCAAAGTACCCTTAATTTATAGAA
1 TTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCATGGTTTATAAAA
72672909 TTACC
1 TTACC
72672914 GTTTTACCCT
Statistics
Matches: 141, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
53 15 0.11
54 125 0.89
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
TTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCATGGTTTATAAAA
Found at i:72672921 original size:27 final size:27
Alignment explanation
Indices: 72672899--72673111 Score: 214
Period size: 27 Copynumber: 7.9 Consensus size: 27
72672889 AGTACCCTTA
*
72672899 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * ** *
72672926 ATTTACAAAATTACTGTTTTACCATCG
1 ATTTATAGAATTACCATTTTACCCTCG
** * *
72672953 ATTTATAGAATTATTATTTTACCTTCA
1 ATTTATAGAATTACCATTTTACCCTCG
* *
72672980 ATTTA-ATGAATTA-TAGTTTTACACTCG
1 ATTTATA-GAATTACCA-TTTTACCCTCG
* *
72673007 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * *
72673034 ATTTACAGAATTACTATTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCG
* *
72673061 ATTTATAGAATTATCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
72673088 ATTTATAAAATTACCATTTTACCC
1 ATTTATAGAATTACCATTTTACCC
72673112 CTAGAGTGTT
Statistics
Matches: 155, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.02
27 150 0.97
28 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.43
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCG
Found at i:72672936 original size:54 final size:54
Alignment explanation
Indices: 72672891--72673111 Score: 239
Period size: 54 Copynumber: 4.1 Consensus size: 54
72672881 ATTACCAAAG
* * *
72672891 TACCCTTAATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
* * ** * * *
72672945 TACCATCGATTTATAGAATTATTATTTTACCTTCAATTTA-ATGAATTA-TAGTTT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACA-AAATTACTA-TTT
* * * * *
72672999 TACACTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
* * * *
72673053 TACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
72673107 TACCC
1 TACCC
72673112 CTAGAGTGTT
Statistics
Matches: 136, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
53 2 0.01
54 131 0.96
55 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (54 bp):
TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
Found at i:72673111 original size:81 final size:81
Alignment explanation
Indices: 72672891--72673111 Score: 327
Period size: 81 Copynumber: 2.7 Consensus size: 81
72672881 ATTACCAAAG
* * ** *
72672891 TACCCTTAATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCATCGATT
1 TACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* *
72672956 TATAGAATTATTATTT
66 TACAGAATTACTATTT
* * *
72672972 TACCTTCAATTTA-ATGAATTATAGTTTTACACTCGATTTACAAAATTACCATTTTACCCTCGAT
1 TACCCTCAATTTATA-GAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGAT
72673036 TTACAGAATTACTATTT
65 TTACAGAATTACTATTT
*
72673053 TACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCC
72673112 CTAGAGTGTT
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.01
81 122 0.98
82 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (81 bp):
TACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
TACAGAATTACTATTT
Found at i:72673371 original size:2 final size:2
Alignment explanation
Indices: 72673364--72673393 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72673354 GCTTCGCCAC
72673364 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72673394 CTGTTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72673634 original size:31 final size:31
Alignment explanation
Indices: 72673568--72673643 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
72673558 TTGCATTCAT
* * *
72673568 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
* *
72673599 ATTCTGATTCTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
72673630 ATTCT-AGTTCTGAT
1 ATTCTGA-TTCTGAT
72673644 AATGTTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 1 0.03
31 38 0.97
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTA
Found at i:72678145 original size:25 final size:25
Alignment explanation
Indices: 72678117--72678166 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
72678107 CCTTATAATA
* *
72678117 TGAAAATGACCATTTTGCCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
72678142 TGAAAATGACCATTATACCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
72678167 CATATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAGG
Found at i:72678221 original size:10 final size:10
Alignment explanation
Indices: 72678206--72678245 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
72678196 CTGTTTTGTA
72678206 CATGATATGC
1 CATGATATGC
72678216 CATGATATGC
1 CATGATATGC
*
72678226 ACCTGATATGC
1 -CATGATATGC
72678237 CATGATATG
1 CATGATATG
72678246 TTCATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:72680648 original size:17 final size:19
Alignment explanation
Indices: 72680616--72680657 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
72680606 CCATATTGCG
72680616 AGCCCATGTGGGCCCACAT
1 AGCCCATGTGGGCCCACAT
72680635 A-CCCATGT-GGCCCACAT
1 AGCCCATGTGGGCCCACAT
72680652 AGCCCA
1 AGCCCA
72680658 GAAATGGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.45
18 11 0.50
19 1 0.05
ACGTcount: A:0.24, C:0.40, G:0.21, T:0.14
Consensus pattern (19 bp):
AGCCCATGTGGGCCCACAT
Found at i:72687528 original size:24 final size:24
Alignment explanation
Indices: 72687496--72687706 Score: 386
Period size: 24 Copynumber: 8.8 Consensus size: 24
72687486 GCAAAGACCA
*
72687496 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
72687520 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
72687544 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
72687568 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
72687592 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
72687616 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
72687640 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
72687664 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
72687688 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
72687707 CTATGTGTGC
Statistics
Matches: 182, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 182 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:72687556 original size:48 final size:48
Alignment explanation
Indices: 72687496--72687774 Score: 411
Period size: 48 Copynumber: 6.1 Consensus size: 48
72687486 GCAAAGACCA
*
72687496 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
72687544 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
*
72687592 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
* *
72687640 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
72687688 TATGGCACTATGTGT--G-----C----G-ACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
* * *
72687724 TATGGCACTATGTGTGCGATTTGCTATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
72687772 TAT
1 TAT
72687775 AGTCACATTC
Statistics
Matches: 214, Mismatches: 5, Indels: 24
0.88 0.02 0.10
Matches are distributed among these distances:
36 32 0.15
37 1 0.00
38 1 0.00
41 1 0.00
43 1 0.00
46 1 0.00
47 1 0.00
48 176 0.82
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (48 bp):
TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
Found at i:72687580 original size:72 final size:72
Alignment explanation
Indices: 72687496--72687774 Score: 429
Period size: 72 Copynumber: 4.0 Consensus size: 72
72687486 GCAAAGACCA
72687496 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
72687561 GATTTAC
66 GATTTAC
72687568 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
72687633 GATTTAC
66 GATTTAC
*
72687640 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGT--
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
72687703 G-----C
66 GATTTAC
** *
72687705 ----G-ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTGCTATAGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
*
72687765 GATTTGC
66 GATTTAC
72687772 TAT
1 TAT
72687775 AGTCACATTC
Statistics
Matches: 192, Mismatches: 5, Indels: 22
0.88 0.02 0.10
Matches are distributed among these distances:
60 53 0.28
61 1 0.01
62 1 0.01
65 1 0.01
67 1 0.01
70 1 0.01
72 134 0.70
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
GATTTAC
Found at i:72687711 original size:12 final size:12
Alignment explanation
Indices: 72687694--72687718 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72687684 TCACTATGGC
72687694 ACTATGTGTGCG
1 ACTATGTGTGCG
72687706 ACTATGTGTGCG
1 ACTATGTGTGCG
72687718 A
1 A
72687719 TTTACTATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (12 bp):
ACTATGTGTGCG
Found at i:72687712 original size:36 final size:36
Alignment explanation
Indices: 72687670--72687742 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
72687660 TCACTATGGC
72687670 ACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
1 ACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
*
72687706 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCG
1 ACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
72687742 A
1 A
72687743 TTTGCTATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (36 bp):
ACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
Found at i:72687719 original size:60 final size:60
Alignment explanation
Indices: 72687646--72687766 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
72687636 TTACTATGGC
*
72687646 ACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG
1 ACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCG
* **
72687706 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTGCTATAGCACTATGTGTGCG
1 ACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCG
72687766 A
1 A
72687767 TTTGCTATAG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (60 bp):
ACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCG
Found at i:72687738 original size:24 final size:24
Alignment explanation
Indices: 72687706--72687776 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
72687696 TATGTGTGCG
* *
72687706 ACTATGTGTGCGATTTACTATGGC
1 ACTATGTGTGCGATTTGCTATAGC
72687730 ACTATGTGTGCGATTTGCTATAGC
1 ACTATGTGTGCGATTTGCTATAGC
72687754 ACTATGTGTGCGATTTGCTATAG
1 ACTATGTGTGCGATTTGCTATAG
72687777 TCACATTCGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.38
Consensus pattern (24 bp):
ACTATGTGTGCGATTTGCTATAGC
Found at i:72695810 original size:24 final size:24
Alignment explanation
Indices: 72695542--72695808 Score: 462
Period size: 24 Copynumber: 11.1 Consensus size: 24
72695532 GCAAAGACCA
*
72695542 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
72695566 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
72695590 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
72695614 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
72695638 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
72695662 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
72695686 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
72695710 TATGGCACTATGTGTGCGATCTAC
1 TATGGCACTATGTGTGCGATTTAC
72695734 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
72695758 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
72695782 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
72695806 TAT
1 TAT
72695809 AGTCACATTC
Statistics
Matches: 234, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 234 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:72699109 original size:13 final size:13
Alignment explanation
Indices: 72699093--72699117 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72699083 TGGCCGTGTG
72699093 AGGGACACGGGCC
1 AGGGACACGGGCC
72699106 AGGGACACGGGC
1 AGGGACACGGGC
72699118 ATGTGCTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:72704626 original size:27 final size:28
Alignment explanation
Indices: 72704596--72704695 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
72704586 TTTAGTTTAC
72704596 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* ** *
72704623 TAAAAATACTAAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
72704650 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
72704677 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
72704696 CGATTTACAA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.12
27 50 0.85
28 2 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:72704708 original size:53 final size:53
Alignment explanation
Indices: 72704598--72704712 Score: 135
Period size: 54 Copynumber: 2.2 Consensus size: 53
72704588 TAGTTTACTA
* * **
72704598 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTAAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCTCGATTTAC
* * *
72704651 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCC-CGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACCAAAATACCCTCGATTTAC
72704704 AAATTACCG
1 AAATTACCG
72704713 TTTTACCCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
52 6 0.11
53 17 0.32
54 30 0.57
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACCAAAATACCCTCGATTTAC
Found at i:72704783 original size:27 final size:27
Alignment explanation
Indices: 72704691--72704927 Score: 252
Period size: 27 Copynumber: 8.9 Consensus size: 27
72704681 ATTACCAAAG
*
72704691 TACCC-CGATTTACA-AATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
72704716 TACCC-CTAATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
*
72704743 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* **
72704770 TACCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
72704797 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
72704824 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
72704851 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
72704878 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
72704905 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
72704928 AAAATACCCT
Statistics
Matches: 188, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
25 6 0.03
26 7 0.04
27 174 0.93
28 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:72704935 original size:27 final size:27
Alignment explanation
Indices: 72704905--72705071 Score: 74
Period size: 27 Copynumber: 6.1 Consensus size: 27
72704895 ATTACTGTTT
72704905 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * *** **
72704932 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
72704959 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
72704985 TACCC-CTAATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
* *
72705012 TACCCTTGACTTT-CTAAAAATTA-TAGGAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
72705041 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
72705068 TACC
1 TACC
72705072 TTTGGTTTGT
Statistics
Matches: 107, Mismatches: 23, Indels: 20
0.71 0.15 0.13
Matches are distributed among these distances:
26 23 0.21
27 59 0.55
28 7 0.07
29 18 0.17
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:72706384 original size:25 final size:25
Alignment explanation
Indices: 72706355--72706402 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72706345 TTATAATATG
* * *
72706355 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72706380 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72706403 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72706470 original size:20 final size:20
Alignment explanation
Indices: 72706445--72706503 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
72706435 TAAATATGGT
72706445 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
72706465 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
72706485 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72706504 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72706610 original size:24 final size:24
Alignment explanation
Indices: 72706554--72706719 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
72706544 GAGGAAGTGA
72706554 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72706578 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72706601 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72706625 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
72706648 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
72706672 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
72706696 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72706720 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:72706623 original size:47 final size:46
Alignment explanation
Indices: 72706554--72706719 Score: 244
Period size: 47 Copynumber: 3.5 Consensus size: 46
72706544 GAGGAAGTGA
72706554 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
72706600 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATC-AAAGGGCTTATGCCCCAGTTAT
* *
72706648 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TCAAAGGGCTTATGCCCCAGTTA-T
*
72706696 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72706720 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
47 66 0.59
48 35 0.32
49 10 0.09
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTAT
Found at i:72706670 original size:71 final size:71
Alignment explanation
Indices: 72706554--72706720 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 71
72706544 GAGGAAGTGA
*
72706554 AAAAGGGCTTATGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
72706619 GTTATC
66 GTTATC
** *
72706625 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
72706690 GTTATT
66 GTTATC
*
72706696 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
72706721 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:72706944 original size:31 final size:31
Alignment explanation
Indices: 72706906--72706987 Score: 155
Period size: 31 Copynumber: 2.6 Consensus size: 31
72706896 ATACCGTTTA
72706906 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
72706937 CAGTAATATGAAATATGAAAAGGCTTCGGCC
1 CAGTAATATGAAATATGAAAAGGCTTCGGCC
*
72706968 CAGTATTATGAAATATGAAA
1 CAGTAATATGAAATATGAAA
72706988 TATGAAAAGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.24
Consensus pattern (31 bp):
CAGTAATATGAAATATGAAAAGGCTTCGGCC
Found at i:72709744 original size:25 final size:27
Alignment explanation
Indices: 72709694--72709771 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 27
72709684 TTAGAATACT
72709694 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTTA-TAAAATTACCGAAATACCC
*
72709722 TTAGTTT-TAAAA-TACTGAAATACCC
1 TTAGTTTATAAAATTACCGAAATACCC
* *
72709747 -TCGATTTGT-AAATTACCGAAATACC
1 TTAG-TTTATAAAATTACCGAAATACC
72709772 TTCGACTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
24 2 0.05
25 18 0.41
26 17 0.39
28 7 0.16
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTAGTTTATAAAATTACCGAAATACCC
Found at i:72709798 original size:27 final size:26
Alignment explanation
Indices: 72709705--72709801 Score: 99
Period size: 26 Copynumber: 3.7 Consensus size: 26
72709695 TAGTTTACTA
* * *
72709705 AAATTACCGAAATACCCT-TAGTTTT
1 AAATTACCGAAATACCCTCGACTTGT
* * *
72709730 AAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTCGACTTGT
*
72709756 AAATTACCGAAATACCTTCGACTTGT
1 AAATTACCGAAATACCCTCGACTTGT
72709782 AAAATTACC-AAAGTACCCTC
1 -AAATTACCGAAA-TACCCTC
72709802 ATTTACAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.27
26 29 0.49
27 14 0.24
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTACCGAAATACCCTCGACTTGT
Found at i:72710027 original size:27 final size:27
Alignment explanation
Indices: 72709795--72710027 Score: 275
Period size: 26 Copynumber: 8.9 Consensus size: 27
72709785 ATTACCAAAG
*
72709795 TACCCTC-ATTTACA-AATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
72709820 TACCC-CTATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
72709846 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* *
72709873 TA-CCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
72709899 TACCCTCGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
72709925 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
72709952 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
72709979 TA-CCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
72710005 TACCCTTGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
72710028 AAAATACCCT
Statistics
Matches: 182, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
24 1 0.01
25 12 0.07
26 85 0.47
27 84 0.46
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:72710035 original size:27 final size:27
Alignment explanation
Indices: 72710005--72710169 Score: 101
Period size: 27 Copynumber: 6.1 Consensus size: 27
72709995 ATTACTGTTT
72710005 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
*** *
72710032 TACCCTTG-TTTGTGAAATTACCGAAAA
1 TACCCTTGATTTACAAAATTA-CTAAAA
** ** *
72710059 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
72710085 TACCC-TAATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
72710111 TA-CCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
72710139 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
72710166 TACC
1 TACC
72710170 TTTGGTTTGT
Statistics
Matches: 109, Mismatches: 17, Indels: 24
0.73 0.11 0.16
Matches are distributed among these distances:
25 3 0.03
26 39 0.36
27 45 0.41
28 17 0.16
29 5 0.05
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:72710052 original size:53 final size:54
Alignment explanation
Indices: 72709802--72710027 Score: 284
Period size: 53 Copynumber: 4.3 Consensus size: 54
72709792 AAGTACCCTC
* * * * * *
72709802 ATTTAC-AAATTACCGTTTTACCC-CTATTTACATAATTACCGTTTTACCCCTG
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTG
* * * * *
72709854 ATTTACATAATTA-TCGTTTTA-CCTCGACTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACT-GTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTG
*
72709907 ATTTAC-AAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTG
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTG
*
72709960 ATTTACAGAATTACTGTTTTA-CCTCGATTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTG
72710013 ATTTACAAAATTACT
1 ATTTACAAAATTACT
72710028 AAAATACCCT
Statistics
Matches: 152, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
52 19 0.12
53 120 0.79
54 13 0.09
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTG
Found at i:72710105 original size:26 final size:26
Alignment explanation
Indices: 72710013--72710114 Score: 82
Period size: 26 Copynumber: 3.9 Consensus size: 26
72710003 TTTACCCTTG
* *
72710013 ATTTACAAAATTACTAAAATACCCTT
1 ATTTACAAAATTACCAAAATACCCTA
* ***
72710039 GTTTGTGAAATTACCGAAAA-ACCCTCA
1 ATTTACAAAATTACC-AAAATACCCT-A
**
72710066 ATTTGTAAAATTACCAAAATACCCTA
1 ATTTACAAAATTACCAAAATACCCTA
*
72710092 ATTTACAAAGTTA-CAGAAATACC
1 ATTTACAAAATTACCA-AAATACC
72710115 TTGACTTTCT
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
25 2 0.03
26 37 0.61
27 22 0.36
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (26 bp):
ATTTACAAAATTACCAAAATACCCTA
Found at i:72710174 original size:27 final size:27
Alignment explanation
Indices: 72710126--72710177 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
72710116 TGACTTTCTA
72710126 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
72710153 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
72710178 GTGATTTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:72710257 original size:26 final size:26
Alignment explanation
Indices: 72710228--72710296 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 26
72710218 ATACCCCTAA
*
72710228 GGTAAAAAGACGTAA-AGCCCCTGTAG
1 GGTAAAATGACGTAATA-CCCCTGTAG
* *
72710254 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGA-CGTAATACCCCTGTAG
72710281 GGTAAAATGACG-AATA
1 GGTAAAATGACGTAATA
72710297 TGCCCTTATG
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 4 0.11
26 10 0.27
27 22 0.59
28 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACGTAATACCCCTGTAG
Found at i:72711465 original size:24 final size:24
Alignment explanation
Indices: 72711438--72711483 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
72711428 TTATAATATG
* * *
72711438 AAATGACCGTTTTGCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
72711462 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
72711484 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:72711552 original size:20 final size:20
Alignment explanation
Indices: 72711527--72711585 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
72711517 TAAATATGGT
72711527 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
72711547 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
72711567 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72711586 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72711663 original size:24 final size:24
Alignment explanation
Indices: 72711636--72711778 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
72711626 GAGGAAGTGA
72711636 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72711660 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72711684 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
72711707 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
72711731 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
72711755 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72711779 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:72711729 original size:47 final size:47
Alignment explanation
Indices: 72711636--72711778 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
72711626 GAGGAAGTGA
72711636 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
72711684 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
72711731 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
72711779 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:72711752 original size:71 final size:72
Alignment explanation
Indices: 72711636--72711779 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
72711626 GAGGAAGTGA
*
72711636 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
72711699 CCAGTTAT
65 CCAGTTAT
** * *
72711707 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
72711772 CAGTTAT
66 CAGTTAT
72711779 A
1 A
72711780 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:72712009 original size:29 final size:30
Alignment explanation
Indices: 72711966--72712042 Score: 129
Period size: 29 Copynumber: 2.6 Consensus size: 30
72711956 TACCGTTTAC
72711966 GTAATATGAATATGAAAAGGCTTCGGCCCA
1 GTAATATGAATATGAAAAGGCTTCGGCCCA
72711996 -TAATATGAATATGAAAAGGCTTCGGCCCA
1 GTAATATGAATATGAAAAGGCTTCGGCCCA
*
72712025 GTATTATGAAATATGAAA
1 GTAATATG-AATATGAAA
72712043 TATGAAAAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
29 29 0.66
30 6 0.14
31 9 0.20
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (30 bp):
GTAATATGAATATGAAAAGGCTTCGGCCCA
Found at i:72714126 original size:40 final size:41
Alignment explanation
Indices: 72714081--72714246 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 41
72714071 CGGAATATAA
*
72714081 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72714121 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72714161 CCGGATAT-A-CCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72714200 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
72714239 CCGGATAT
1 CCGGATAT
72714247 CATTCAATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
39 49 0.46
40 58 0.54
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72714203 original size:39 final size:38
Alignment explanation
Indices: 72714097--72714208 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 38
72714087 ATAATCAAGT
* * *
72714097 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
*
72714137 GCACGAATGCCTTCGGGTCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
72714176 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
72714209 ATTTCCAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.03
39 33 0.51
40 30 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:72714230 original size:79 final size:78
Alignment explanation
Indices: 72714097--72714246 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
72714087 ATAATCAAGT
*
72714097 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
72714162 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
72714176 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
72714239 CCGGATAT
64 CCGGATAT
72714247 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:72715088 original size:17 final size:19
Alignment explanation
Indices: 72715065--72715110 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72715055 AAGAAGCATG
72715065 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
72715083 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
72715101 AATCATGCTC
1 AATCATGCTC
72715111 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:72715519 original size:56 final size:53
Alignment explanation
Indices: 72715434--72715537 Score: 122
Period size: 56 Copynumber: 1.9 Consensus size: 53
72715424 CCCCCTTTTC
*
72715434 CCTTAGTAATTTCGGCCAAGAAGATGAGAAAGGATGAACAAATTTTTTTTTTCTTT
1 CCTTAGTAATTTCGGCCAAGAAGATGAG-AAGAATGAAC--ATTTTTTTTTTCTTT
**
72715490 CCTTAGTACA-TTCGGCCAAG-CTATGGAGAAGAATGAACATTTTTTTTT
1 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAGAATGAACATTTTTTTTT
72715538 CTCTGTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
53 10 0.23
55 11 0.26
56 21 0.49
57 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (53 bp):
CCTTAGTAATTTCGGCCAAGAAGATGAGAAGAATGAACATTTTTTTTTTCTTT
Found at i:72723310 original size:40 final size:38
Alignment explanation
Indices: 72723144--72723317 Score: 144
Period size: 38 Copynumber: 4.5 Consensus size: 38
72723134 TGAGAAATTG
*
72723144 AATG-ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
72723182 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
72723219 AGTAGCTATATCC-GGCTAAGA-CCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
72723257 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
*
72723297 AATCGTGATATCCGGGTTAAG
1 AAT-GT-ATATCCGGGCTAAG
72723318 TCCGTAGGCC
Statistics
Matches: 109, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 40 0.37
39 26 0.24
40 37 0.34
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:72731323 original size:40 final size:40
Alignment explanation
Indices: 72731221--72731404 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
72731211 AAATTGAATG
* * * * *
72731221 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
72731261 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
72731301 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
72731341 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
72731381 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
72731405 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:72734457 original size:40 final size:39
Alignment explanation
Indices: 72734400--72734629 Score: 257
Period size: 40 Copynumber: 5.8 Consensus size: 39
72734390 TTGAATGATG
* * *
72734400 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
72734440 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
72734480 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
72734519 CCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTATCAAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTA-CTAAA
* *
72734560 T-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
* *
72734599 TCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGA
72734630 ATCACTATAA
Statistics
Matches: 163, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 112 0.69
41 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72734580 original size:80 final size:80
Alignment explanation
Indices: 72734400--72734629 Score: 290
Period size: 80 Copynumber: 2.9 Consensus size: 80
72734390 TTGAATGATG
* * * * *
72734400 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAGTTCCGAAGGCATT
*
72734464 CGTGCGAGTTAATAAA
65 TGTGCGAGTTAATAAA
* *
72734480 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTTCCGAAGGCATTT
72734544 GTGCGAGTT-ATCAAAA
66 GTGCGAGTTAAT--AAA
* * *
72734560 T-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAA-TTCCCGAAGGCAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTT-CCGAAGGCATT
72734623 TGTGCGA
65 TGTGCGA
72734630 ATCACTATAA
Statistics
Matches: 132, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 56 0.42
80 74 0.56
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTTCCGAAGGCATTT
GTGCGAGTTAATAAA
Found at i:72734644 original size:40 final size:40
Alignment explanation
Indices: 72734400--72734662 Score: 220
Period size: 40 Copynumber: 6.6 Consensus size: 40
72734390 TTGAATGATG
* * * * *
72734400 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAATTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * *
72734440 TCCGGACTAAGAT-CCGAAGGC-ATTCGTGCGAGTTAATAAA
1 TCCGGGCTAA-TTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* *
72734480 TCCGGGCTAA-GCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTTACTAAA
* * * *
72734519 CCCGGGTTAAGTT-CCGAAGGCATTTGTGCGAGTTATCAAAA
1 TCCGGGCTAA-TTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* *
72734560 T-CGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 TCCGGGCTAATTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* *
72734599 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTTACTA-AA
*
72734640 -CCGGGC-AATGTCCCGAAGACAAT
1 TCCGGGCTAAT-TCCCGAAGGCAAT
72734663 CGAGCTAGTC
Statistics
Matches: 186, Mismatches: 24, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
39 41 0.22
40 131 0.70
41 14 0.08
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAATTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:72734686 original size:119 final size:118
Alignment explanation
Indices: 72734435--72734697 Score: 271
Period size: 119 Copynumber: 2.2 Consensus size: 118
72734425 TGCTAAGTGA
*
72734435 CTATATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGC
1 CTATATCCGG-TTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGC
* * * * * * * * * *
72734500 ATTTGTGCGAGTTACTAAACCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTAT
64 AATTGTGCGAATCACTAAACCCGGGTCAAGTCCCGAAGACAATCGAGCGAGTTAG
* * * * *
72734555 CAAAATCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGC
1 CTATATCCGGTTAAGT-CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAA-GCCCGAAGGC
* *
72734620 AATTGTGCGAATCACTATAA-CCGGG-CAATGTCCCGAAGACAATCGAGCTAG-TCG
64 AATTGTGCGAATCACTA-AACCCGGGTCAA-GTCCCGAAGACAATCGAGCGAGTTAG
*
72734674 CTATATCCGGTTAAATTCCGAAGG
1 CTATATCCGGTT-AAGTCCGAAGG
72734698 TACGTGATTC
Statistics
Matches: 116, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
118 1 0.01
119 59 0.51
120 54 0.47
121 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (118 bp):
CTATATCCGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCAA
TTGTGCGAATCACTAAACCCGGGTCAAGTCCCGAAGACAATCGAGCGAGTTAG
Found at i:72739256 original size:32 final size:32
Alignment explanation
Indices: 72739215--72739276 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
72739205 CATCTATTTT
72739215 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
72739247 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
72739277 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:72742517 original size:18 final size:18
Alignment explanation
Indices: 72742484--72742577 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
72742474 AAGGTTTTCT
72742484 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
72742499 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
72742517 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
72742535 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
72742553 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
72742571 TATTGAT
1 TATTGAT
72742578 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:72752750 original size:40 final size:39
Alignment explanation
Indices: 72752700--72752956 Score: 252
Period size: 40 Copynumber: 6.5 Consensus size: 39
72752690 TTGAATGATG
* *
72752700 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* * *
72752740 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-AA
*
72752780 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
72752818 ACCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTATCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
* * *
72752858 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* * * *
72752898 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
72752938 ACCGGGC-AATGTCCCGAAG
1 TCCGGGCTAA-GTCCCGAAG
72752957 ACAATCGAGC
Statistics
Matches: 182, Mismatches: 26, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
38 10 0.05
39 48 0.26
40 116 0.64
41 8 0.04
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:72754995 original size:28 final size:28
Alignment explanation
Indices: 72754964--72755053 Score: 85
Period size: 29 Copynumber: 3.2 Consensus size: 28
72754954 TCGCATACTC
*
72754964 AGTGCCCACTAACTGATTTCGCACACAT
1 AGTGCCCACTAACTGATCTCGCACACAT
* * * *
72754992 AGTGCTCGATTAA-AGAACTCGCACACAT
1 AGTGC-CCACTAACTGATCTCGCACACAT
*
72755020 AGTGCCTCAACT-ACTGATCTGGCACACAT
1 AGTGCC-C-ACTAACTGATCTCGCACACAT
72755049 AGTGC
1 AGTGC
72755054 TCAGTTGAAG
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
27 1 0.02
28 23 0.48
29 24 0.50
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (28 bp):
AGTGCCCACTAACTGATCTCGCACACAT
Found at i:72755045 original size:57 final size:57
Alignment explanation
Indices: 72754954--72755082 Score: 147
Period size: 57 Copynumber: 2.3 Consensus size: 57
72754944 GAAACACACT
* * *
72754954 TCGCATACTCAGTGCC-C-ACTAACTGATTTCGCACACATAGTGCTC-GATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGTGCTCAG-TTAAAGAAC
* * * *
72755010 TCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCAGTTGAAGAGC
1 TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCAGTTAAAGAAC
*
72755067 TTGCACACACAGTGCC
1 TCGCACACACAGTGCC
72755083 CTATAATTCC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
56 13 0.21
57 44 0.72
58 4 0.07
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGTGCTCAGTTAAAGAAC
Found at i:72755073 original size:28 final size:27
Alignment explanation
Indices: 72754982--72755081 Score: 76
Period size: 28 Copynumber: 3.6 Consensus size: 27
72754972 CTAACTGATT
72754982 TCGCACACATAGTGCTC-GATTAAAGAAC
1 TCGCACACATAGTGCTCAG-TT-AAGAAC
** * *
72755010 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCAGTTA-AGAAC
* *
72755039 TGGCACACATAGTGCTCAGTTGAAGAGC
1 TCGCACACATAGTGCTCAGTT-AAGAAC
* *
72755067 TTGCACACACAGTGC
1 TCGCACACATAGTGC
72755082 CCTATAATTC
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
28 36 0.63
29 21 0.37
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCAGTTAAGAAC
Found at i:72755159 original size:40 final size:40
Alignment explanation
Indices: 72755091--72755367 Score: 468
Period size: 40 Copynumber: 7.0 Consensus size: 40
72755081 CCCTATAATT
*
72755091 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCA
72755130 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* *
72755170 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
72755210 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * *
72755250 CTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
72755290 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
72755330 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
72755368 AACTCTCAAT
Statistics
Matches: 224, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 15 0.07
40 209 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:72756950 original size:47 final size:47
Alignment explanation
Indices: 72756881--72757118 Score: 352
Period size: 47 Copynumber: 5.1 Consensus size: 47
72756871 TTCCACGTTT
* * *
72756881 ATCACATTAGCCATTCTACCTTATCACACACATGCATGTTCACATTC
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTC
*
72756928 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTC
* * * * * *
72756975 ATCACATTGGTCATTCGACCTTATCACATATATACA-CTTCTACGTTT
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATGTTC-ACATTC
*
72757022 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTC
*
72757069 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTC
72757116 ATC
1 ATC
72757119 TCATAAAATC
Statistics
Matches: 169, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
46 3 0.02
47 163 0.96
48 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
ATCACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTC
Found at i:72757073 original size:25 final size:25
Alignment explanation
Indices: 72757044--72757118 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 25
72757034 ATTCTACCTT
72757044 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
72757069 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
72757091 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
72757116 ATC
1 ATC
72757119 TCATAAAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 18
0.63 0.07 0.31
Matches are distributed among these distances:
22 6 0.16
23 11 0.30
24 11 0.30
25 9 0.24
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:72757115 original size:141 final size:141
Alignment explanation
Indices: 72756861--72757118 Score: 489
Period size: 141 Copynumber: 1.8 Consensus size: 141
72756851 ATATATATAT
72756861 ATATATACACTTCCACGTTTATCACATTAGCCATTCTACCTTATCACACACATGCATGTTCACAT
1 ATATATACACTTCCACGTTTATCACATTAGCCATTCTACCTTATCACACACATGCATGTTCACAT
72756926 TCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGTCATTC
66 TCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGTCATTC
72756991 GACCTTATCAC
131 GACCTTATCAC
* * *
72757002 ATATATACACTTCTACGTTTATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACAT
1 ATATATACACTTCCACGTTTATCACATTAGCCATTCTACCTTATCACACACATGCATGTTCACAT
72757067 TCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATC
66 TCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATC
72757119 TCATAAAATC
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 114 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (141 bp):
ATATATACACTTCCACGTTTATCACATTAGCCATTCTACCTTATCACACACATGCATGTTCACAT
TCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGTCATTC
GACCTTATCAC
Found at i:72759756 original size:27 final size:26
Alignment explanation
Indices: 72759707--72759759 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
72759697 GGGGTGTCAC
*
72759707 ACAGATATTGTGACGAAGTCACCAGA
1 ACAGATATTGTGACGAAGCCACCAGA
* *
72759733 ACAGATATATGTGGCGAGGCCACCAGA
1 ACAGATAT-TGTGACGAAGCCACCAGA
72759760 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (26 bp):
ACAGATATTGTGACGAAGCCACCAGA
Found at i:72769735 original size:37 final size:37
Alignment explanation
Indices: 72769611--72769735 Score: 142
Period size: 37 Copynumber: 3.4 Consensus size: 37
72769601 CCAACCGAAG
* * ** *
72769611 CATGCCAGATGTTCATAAGATCTAATCCACTTGATAG
1 CATGCCAGATGCTCATAAGAGCTAATCCACCCGATAA
* * **
72769648 CATGCCAAATTCTTTTAAGAGCTAATCCACCCGATAA
1 CATGCCAGATGCTCATAAGAGCTAATCCACCCGATAA
** *
72769685 CACACCAGGTGCTCATAAGAGCTAATCCACCCGATAA
1 CATGCCAGATGCTCATAAGAGCTAATCCACCCGATAA
72769722 CATGCCAGATGCTC
1 CATGCCAGATGCTC
72769736 CGAAAAGCTA
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (37 bp):
CATGCCAGATGCTCATAAGAGCTAATCCACCCGATAA
Found at i:72769745 original size:37 final size:37
Alignment explanation
Indices: 72769667--72769745 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
72769657 TTCTTTTAAG
* * *
72769667 AGCTAATCCACCCGATAACACACCAGGTGCTCATAAG
1 AGCTAATCCACCCGATAACACACCAGATGCTCAGAAA
** *
72769704 AGCTAATCCACCCGATAACATGCCAGATGCTCCGAAA
1 AGCTAATCCACCCGATAACACACCAGATGCTCAGAAA
72769741 AGCTA
1 AGCTA
72769746 GTATAACAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.35, C:0.32, G:0.16, T:0.16
Consensus pattern (37 bp):
AGCTAATCCACCCGATAACACACCAGATGCTCAGAAA
Found at i:72772464 original size:40 final size:40
Alignment explanation
Indices: 72772427--72772610 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
72772417 GCTACTCGTT
*
72772427 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
72772467 CGAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
72772507 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
72772546 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
72772587 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
72772611 ACATCATTCG
Statistics
Matches: 124, Mismatches: 12, Indels: 16
0.82 0.08 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.62
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72772527 original size:79 final size:80
Alignment explanation
Indices: 72772429--72772611 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
72772419 TACTCGTTCA
* * *
72772429 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
72772492 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
72772509 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
72772573 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
72772588 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
72772612 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:72780294 original size:19 final size:20
Alignment explanation
Indices: 72780255--72780294 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
72780245 CCAGCCCAGT
*
72780255 CCAACCAATACACCACCTGTA
1 CCAACCAACACACCA-CTGTA
72780276 CCAACCAACACACCA-TGTA
1 CCAACCAACACACCACTGTA
72780295 GGGATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
21 14 0.78
ACGTcount: A:0.40, C:0.42, G:0.05, T:0.12
Consensus pattern (20 bp):
CCAACCAACACACCACTGTA
Found at i:72780958 original size:19 final size:17
Alignment explanation
Indices: 72780916--72780958 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
72780906 AATCCGTGTG
*
72780916 AGGCCCACGAGCCCATT
1 AGGCCCACCAGCCCATT
*
72780933 GGGCCCACACAGCCCATCT
1 AGGCCCAC-CAGCCCAT-T
72780952 AGGCCCA
1 AGGCCCA
72780959 ACGTGGCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 7 0.33
19 7 0.33
ACGTcount: A:0.23, C:0.44, G:0.23, T:0.09
Consensus pattern (17 bp):
AGGCCCACCAGCCCATT
Found at i:72784044 original size:46 final size:46
Alignment explanation
Indices: 72783991--72784119 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
72783981 TATTTGGGCA
*
72783991 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
72784037 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
72784083 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72784120 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:72786971 original size:27 final size:27
Alignment explanation
Indices: 72786933--72786986 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
72786923 TTCCAGTGGG
72786933 ATTAAATGATGTTCTCTTTTGGACTTT
1 ATTAAATGATGTTCTCTTTTGGACTTT
*
72786960 ATTAAATGATGTTTTCTTTTGGACTTT
1 ATTAAATGATGTTCTCTTTTGGACTTT
72786987 CTTTCTTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.09, G:0.15, T:0.54
Consensus pattern (27 bp):
ATTAAATGATGTTCTCTTTTGGACTTT
Found at i:72789478 original size:46 final size:46
Alignment explanation
Indices: 72789425--72789553 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
72789415 TATTTGGGCA
*
72789425 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
72789471 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
72789517 -CCTGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72789554 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 2 0.03
46 77 0.97
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:72795589 original size:71 final size:70
Alignment explanation
Indices: 72795455--72795584 Score: 176
Period size: 71 Copynumber: 1.9 Consensus size: 70
72795445 AGCCGATTTG
* * *
72795455 TCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCACGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATT
72795520 TATCTC
65 TATCTC
* *
72795526 TCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 TCACGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC
72795585 TACATAGTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
68 22 0.42
70 2 0.04
71 29 0.55
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (70 bp):
TCACGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATTT
ATCTC
Found at i:72799603 original size:93 final size:93
Alignment explanation
Indices: 72799491--72799662 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72799481 GCCCATAAGT
* * *
72799491 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72799556 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
72799584 GAACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72799649 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
72799663 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72799658 original size:46 final size:46
Alignment explanation
Indices: 72799483--72799658 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
72799473 TGTAACCCGC
* * *
72799483 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
72799529 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* * *
72799579 CTC-T---CGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
72799622 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72799659 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.59
47 27 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:72799677 original size:46 final size:46
Alignment explanation
Indices: 72799534--72799677 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 46
72799524 CGCATCCATA
* * *
72799534 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATC-CT
* * *
72799583 --CGAACTCGGACTCAACTCAACAAGTTCGGA----CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC-T
*
72799626 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
72799673 AGTGA
1 AGTGA
72799678 CATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 5 0.07
46 33 0.44
47 28 0.37
48 4 0.05
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
Found at i:72801054 original size:15 final size:13
Alignment explanation
Indices: 72801033--72801066 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
72801023 AGAACGCAAA
72801033 CAATCATACAATTT
1 CAATCATA-AATTT
72801047 CGAATCATAAATTT
1 C-AATCATAAATTT
72801061 CAATCA
1 CAATCA
72801067 ATTTAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 7 0.37
15 7 0.37
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.32
Consensus pattern (13 bp):
CAATCATAAATTT
Found at i:72806464 original size:48 final size:47
Alignment explanation
Indices: 72806393--72806723 Score: 302
Period size: 48 Copynumber: 6.9 Consensus size: 47
72806383 GGGTAAGATA
* * *
72806393 CCGATGCCATGTCCCAGGCATGGTCTTATACTAGCTCACATATTGAGG
1 CCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATTAAGG
* * * * * * * *
72806441 CCGATGCTATGTCCTAGGCATGGTCCTACACTTGCTCTCTTAATAATG
1 CCGATGCCATGTCC-AGACATGGTCTTACACTAGCTCACATATTAAGG
* * * * *
72806489 CCGATGTCATGTTCCAAACATGGTCTTACACTGGCCCACATATTGAGG
1 CCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATATTAAGG
* * ** *
72806537 CCGATACCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATG
1 CCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATTAAGG
* * * *
72806585 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATATTGAGG
1 CCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATATTAAGG
* * * ** *
72806633 CTGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATAACAATG
1 CCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATTAAGG
* *
72806681 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAT
1 CCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATAT
72806724 ACCCCAACGT
Statistics
Matches: 223, Mismatches: 54, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
47 4 0.02
48 214 0.96
49 5 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCAGACATGGTCTTACACTAGCTCACATATTAAGG
Found at i:72806559 original size:96 final size:96
Alignment explanation
Indices: 72806393--72806723 Score: 482
Period size: 96 Copynumber: 3.4 Consensus size: 96
72806383 GGGTAAGATA
* ** * * *
72806393 CCGATGCCATGTCCCAGGCATGGTCTTATACTAGCTCACATATTGAGGCCGATGCTATGTCCTAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAG
* * * * *
72806458 GCATGGTCCTACACTTGCTCTCTTAATAATG
66 ACATGGTCTTACACTAGCTCTCATAACAATG
* * * *
72806489 CCGATGTCATGTTCCAAACATGGTCTTACACTGGCCCACATATTGAGGCCGATACCATGTCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAG
72806554 ACATGGTCTTACACTAGCTCTCATAACAATG
66 ACATGGTCTTACACTAGCTCTCATAACAATG
* * *
72806585 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATATTGAGGCTGATGCCATGTCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAG
*
72806650 AAATGGTCTTACACTAGCTCTCATAACAATG
66 ACATGGTCTTACACTAGCTCTCATAACAATG
*
72806681 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAT
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAT
72806724 ACCCCAACGT
Statistics
Matches: 211, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 211 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (96 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTCATAACAATG
Found at i:72806656 original size:144 final size:144
Alignment explanation
Indices: 72806393--72806722 Score: 342
Period size: 144 Copynumber: 2.3 Consensus size: 144
72806383 GGGTAAGATA
* * *** * *
72806393 CCGATGCCATGTCCCAGGCATGGTCTTATACTAGCTCACATATTGAGGCCGATGCTATGTCCTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATGTCCTAA
* * * * * * *
72806458 GCATGGTCCTACACTTGCTCTCTTAATAATGCCGATGTCATGTTCCAAACATGGTCTTACACTGG
66 ACATGGTCCTACACTGGCTCTCATAATAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
***
72806523 CCCACATATTGAGG
131 CCCACATAACAAGG
* * *
72806537 CCGATACCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCC-A
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATG-TCCTA
* * * *
72806601 AACATGGTCTTACACTGGCT-TACATATTGAGGCTGATGCCATGTCCCAGAA-ATGGTCTTACAC
65 AACATGGTCCTACACTGGCTCT-CATAATAAGGCCGATGCCATGTCCCA-AACATGGTCTTACAC
* * *
72806664 TAGCTCTCATAACAATG
128 TAGCCCACATAACAAGG
* * *
72806681 CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
72806723 TACCCCAACG
Statistics
Matches: 151, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
143 1 0.01
144 145 0.96
145 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (144 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATGTCCTAA
ACATGGTCCTACACTGGCTCTCATAATAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
CCCACATAACAAGG
Found at i:72815273 original size:13 final size:12
Alignment explanation
Indices: 72815232--72815272 Score: 73
Period size: 12 Copynumber: 3.3 Consensus size: 12
72815222 GTGTCTGAGA
72815232 AAGCCTGGGTTC
1 AAGCCTGGGTTC
72815244 AAGCCTGGGTTC
1 AAGCCTGGGTTC
72815256 AAGCTCTGGGTTC
1 AAGC-CTGGGTTC
72815269 AAGC
1 AAGC
72815273 TTCGGCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 16 0.57
13 12 0.43
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (12 bp):
AAGCCTGGGTTC
Found at i:72815870 original size:26 final size:27
Alignment explanation
Indices: 72815826--72815893 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
72815816 GGAAGTACTG
* * *
72815826 TACTGGTGACTATGTCACATTTACTAT
1 TACTGGTGACTATGCCACACTTACTAC
*
72815853 TACTGGTGGCT-TGCCACACTTACTAC
1 TACTGGTGACTATGCCACACTTACTAC
72815879 TACTGGT-AGCTATGC
1 TACTGGTGA-CTATGC
72815894 TGCGTTAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 21 0.62
27 13 0.38
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (27 bp):
TACTGGTGACTATGCCACACTTACTAC
Found at i:72828365 original size:13 final size:13
Alignment explanation
Indices: 72828347--72828371 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72828337 ACCATTTAGG
72828347 GGCACACGGCCAA
1 GGCACACGGCCAA
72828360 GGCACACGGCCA
1 GGCACACGGCCA
72828372 TGAGTTAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.32, T:0.00
Consensus pattern (13 bp):
GGCACACGGCCAA
Found at i:72829489 original size:48 final size:48
Alignment explanation
Indices: 72829409--72829740 Score: 371
Period size: 48 Copynumber: 6.9 Consensus size: 48
72829399 AGGGTAATAT
* **
72829409 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAG
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAG
* * * * * *
72829457 GCCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAT
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAG
* *
72829505 GCCAATG-C-TGTGCACCAAACATGGTCTTACACTGGCTCACATATTAAG
1 GCCAATGCCATGT-C-CCAAACATGGTCTTACACTAGCTCACATATCAAG
* * * * *
72829553 GCCAATGCCATGTCTCAAACATGGTCTTACACTAGCTCTCCTAACAAT
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAG
* * * * **
72829601 GCCGATGCCATGTTCCAAAGATGGTCTTACACTGGCTCACATATTGAG
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAG
* ** * *
72829649 GCCAATGCCATGTCCCATACATGGTCTTACACTAGCTTTCATAACAAT
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAG
* *
72829697 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
1 GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
72829741 ACCCCAACAT
Statistics
Matches: 230, Mismatches: 50, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
46 3 0.01
47 1 0.00
48 221 0.96
49 2 0.01
50 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (48 bp):
GCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAG
Found at i:72829575 original size:96 final size:95
Alignment explanation
Indices: 72829422--72829740 Score: 444
Period size: 96 Copynumber: 3.3 Consensus size: 95
72829412 AATGCCATGT
* * * *
72829422 CCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCTATGTCCCAGACATGGTCTTAC
1 CCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTCCCAAACATGGTCTTAC
*
72829487 ACTAGCTCTCATAACAATGCCAATGCTGTG
66 ACTAGCTCTCATAACAATGCCGATGCTGTG
* * *
72829517 CACCAAACATGGTCTTACACTGGCTCACATATTAAGGCCAATGCCATGTCTCAAACATGGTCTTA
1 C-CCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTCCCAAACATGGTCTTA
*
72829582 CACTAGCTCTCCTAACAATGCCGATGCCATGT-
65 CACTAGCTCTCATAACAATGCCGATG-C-TGTG
* * * *
72829614 TCCAAAGATGGTCTTACACTGGCTCACATATTGAGGCCAATGCCATGTCCCATACATGGTCTTAC
1 CCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTCCCAAACATGGTCTTAC
* *
72829679 ACTAGCTTTCATAACAATGTCGATGCCATGT-
66 ACTAGCTCTCATAACAATGCCGATG-C-TGTG
72829710 CCCAAACATGGTCTTACACTAGCTCACATAT
1 CCCAAACATGGTCTTACACTAGCTCACATAT
72829741 ACCCCAACAT
Statistics
Matches: 201, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
95 1 0.00
96 196 0.98
97 1 0.00
98 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (95 bp):
CCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTCCCAAACATGGTCTTAC
ACTAGCTCTCATAACAATGCCGATGCTGTG
Found at i:72834504 original size:28 final size:28
Alignment explanation
Indices: 72834435--72834535 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72834425 GACAAGATTG
* * * *
72834435 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72834465 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72834493 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72834522 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72834536 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72834529 original size:29 final size:28
Alignment explanation
Indices: 72834464--72834535 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
72834454 AAAATTGTAC
*
72834464 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
72834492 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
72834521 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72834536 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:72849336 original size:30 final size:30
Alignment explanation
Indices: 72849295--72849356 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
72849285 CAAGTAGCCG
*
72849295 AAGCTAATTTAAATTGCACACTTAGTGCCA
1 AAGCTAATTTAAATCGCACACTTAGTGCCA
*
72849325 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAATTTAAATCGCACACTTAGTGCCA
72849355 AA
1 AA
72849357 ATTTCCGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (30 bp):
AAGCTAATTTAAATCGCACACTTAGTGCCA
Found at i:72852950 original size:2 final size:2
Alignment explanation
Indices: 72852943--72852976 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
72852933 GCCTCGCCAC
72852943 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72852977 CTATTCTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72853045 original size:2 final size:2
Alignment explanation
Indices: 72853038--72853085 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
72853028 GCTTCGCCAC
72853038 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72853080 AT AT AT
1 AT AT AT
72853086 CTGTTCTGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72857698 original size:31 final size:31
Alignment explanation
Indices: 72857654--72857755 Score: 105
Period size: 31 Copynumber: 3.1 Consensus size: 31
72857644 CCTTTTCATA
*
72857654 TTTCATATCTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
72857691 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
* * *
72857723 TTTCATATTTCATATTAATTGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
72857754 TT
1 TT
72857756 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
31 30 0.50
32 1 0.02
33 1 0.02
37 1 0.02
38 27 0.45
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:72857738 original size:38 final size:38
Alignment explanation
Indices: 72857631--72857738 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
72857621 TTAATCATGC
* *
72857631 ACTGGGCCGTAGCCCTTTTCATATTTCATATCTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
72857670 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
72857708 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
72857739 AATTGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 54 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:72857993 original size:24 final size:24
Alignment explanation
Indices: 72857947--72858065 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
72857937 GCTTTATCAT
*
72857947 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
72857972 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
72857996 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
72858019 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
72858043 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72858066 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72858026 original size:47 final size:48
Alignment explanation
Indices: 72857947--72858065 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
72857937 GCTTTATCAT
*
72857947 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
72857996 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
72858043 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72858066 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:72858141 original size:20 final size:20
Alignment explanation
Indices: 72858116--72858175 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
72858106 TATGATTACC
72858116 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
72858136 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
72858156 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
72858176 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:72858250 original size:25 final size:25
Alignment explanation
Indices: 72858218--72858265 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72858208 ATACATAAAC
* * *
72858218 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72858243 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72858266 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72863239 original size:37 final size:37
Alignment explanation
Indices: 72863181--72863287 Score: 178
Period size: 38 Copynumber: 2.8 Consensus size: 37
72863171 TCAATCATGC
*
72863181 ACTGGGCCGTAGCCCTTTTCATATTTCATATTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTCATAAT
*
72863219 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATA-TTCATAAT
72863257 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
72863288 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
37 18 0.28
38 47 0.72
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.39
Consensus pattern (37 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTCATAAT
Found at i:72863247 original size:31 final size:32
Alignment explanation
Indices: 72863204--72863304 Score: 118
Period size: 38 Copynumber: 3.1 Consensus size: 32
72863194 CCTTTTCATA
72863204 TTTCATA--TTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTTCATAATACTGGGCCGAAGCCT
72863234 TTTCATGTTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCA----T-AT-TTTCATAATACTGGGCCGAAGCCT
*
72863272 TTTCATA-TTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTTCATAATACTGGGCCGAAGCCT
72863303 TT
1 TT
72863305 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 15
0.79 0.01 0.19
Matches are distributed among these distances:
30 5 0.08
31 25 0.40
33 1 0.02
34 2 0.03
35 1 0.02
38 28 0.45
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (32 bp):
TTTCATATTTTCATAATACTGGGCCGAAGCCT
Found at i:72863542 original size:24 final size:24
Alignment explanation
Indices: 72863496--72863614 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
72863486 GCTTTATCAT
*
72863496 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
72863521 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
72863545 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
72863568 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
72863592 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72863615 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72863575 original size:47 final size:48
Alignment explanation
Indices: 72863496--72863614 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
72863486 GCTTTATCAT
*
72863496 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
72863545 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
72863592 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72863615 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:72863690 original size:20 final size:20
Alignment explanation
Indices: 72863665--72863724 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
72863655 TATGATTACC
72863665 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
72863685 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
72863705 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
72863725 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:72863799 original size:25 final size:25
Alignment explanation
Indices: 72863767--72863814 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72863757 ATACATAAAC
* * *
72863767 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72863792 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72863815 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72886428 original size:19 final size:19
Alignment explanation
Indices: 72886382--72886429 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
72886372 GTAAATATTT
*
72886382 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAAGTAGA
*
72886400 TAAATCTTATTTAAGTAGA
1 TAAATTTTATTTAAGTAGA
*
72886419 TAAGTTTTATT
1 TAAATTTTATT
72886430 AGAATAAGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAAGTAGA
Done.