Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 245 of 328
Found at i:72893260 original size:6 final size:6
Alignment explanation
Indices: 72893251--72893281 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
72893241 GGATGGATTG
*
72893251 GGGAGA GGGAGA GGGAGA GGGAGA GGAAGA G
1 GGGAGA GGGAGA GGGAGA GGGAGA GGGAGA G
72893282 AAGTGCGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
GGGAGA
Found at i:72893395 original size:12 final size:13
Alignment explanation
Indices: 72893373--72893401 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
72893363 AGCCCCTTGT
72893373 GCTATTGGCTATG
1 GCTATTGGCTATG
72893386 GCTA-TGGCTATG
1 GCTATTGGCTATG
72893398 GCTA
1 GCTA
72893402 AAAAAATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (13 bp):
GCTATTGGCTATG
Found at i:72893784 original size:9 final size:9
Alignment explanation
Indices: 72893750--72893782 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
72893740 TTAAGTCTAA
72893750 TTTTTAATT
1 TTTTTAATT
72893759 TTTTTAATT
1 TTTTTAATT
*
72893768 TTTTTATTT
1 TTTTTAATT
72893777 TTTTTA
1 TTTTTA
72893783 TTAGTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTAATT
Found at i:72894297 original size:3 final size:3
Alignment explanation
Indices: 72894291--72894326 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
72894281 TCTTTTTATT
72894291 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
72894327 TGCATATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:72904150 original size:21 final size:22
Alignment explanation
Indices: 72904124--72904183 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
72904114 ATACTTCTTG
72904124 ATCATAATTTTTTATAA-ATGT
1 ATCATAATTTTTTATAACATGT
* *
72904145 ATCATAATACTTTCATAACATGT
1 ATCATAAT-TTTTTATAACATGT
* *
72904168 A-AATTATTTTTTATAA
1 ATCATAATTTTTTATAA
72904184 TAAATTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 15 0.48
22 11 0.35
23 5 0.16
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.48
Consensus pattern (22 bp):
ATCATAATTTTTTATAACATGT
Found at i:72906681 original size:48 final size:47
Alignment explanation
Indices: 72906599--72906878 Score: 276
Period size: 48 Copynumber: 5.9 Consensus size: 47
72906589 CGCTGGGGTA
* * * *
72906599 TATGTAAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGTACTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-ACTGT
* * * * **
72906647 TATGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATTGGCCTCAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGACT-GT
* * * *
72906695 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-GGACTGT
* * * * * **
72906743 TATGAGAGCTGGTGCAAGACCATGTTTGGGACATGGCATCTGCCTCAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGACT-GT
*
72906791 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-C-GT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGACTGT
*
72906836 CAATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 ---TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC
72906879 AGCATCTTAC
Statistics
Matches: 186, Mismatches: 40, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
47 4 0.02
48 180 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (47 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGACTGT
Found at i:72906762 original size:96 final size:96
Alignment explanation
Indices: 72906598--72906878 Score: 411
Period size: 96 Copynumber: 2.9 Consensus size: 96
72906588 ACGCTGGGGT
* * * *
72906598 ATATGTAAGCCAGTGTAAGACCATGTTTAGAACATGGCATCGGTACTGTTATGAGAGCTAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
72906663 AGACCATGTATGGGACATGGCAT-TGGCCTCA
66 AGACCATGTATGGGACATGGCATCT-GCCTCA
* * *
72906694 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGTTATGAGAGCTGGTGCA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
*
72906759 AGACCATGTTTGGGACATGGCATCTGCCTCA
66 AGACCATGTATGGGACATGGCATCTGCCTCA
* * *** *
72906790 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCGTCAATATGTGAGCTAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
*
72906855 AGACCATGTCTGGGACATGGCATC
66 AGACCATGTATGGGACATGGCATC
72906879 AGCATCTTAC
Statistics
Matches: 166, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
96 165 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTA
AGACCATGTATGGGACATGGCATCTGCCTCA
Found at i:72909282 original size:46 final size:45
Alignment explanation
Indices: 72909215--72909388 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
72909205 TGTAATCTGC
*
72909215 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
* *
72909261 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGCAT
* *** * * *
72909307 ACATCTCTCGAACTCGGACTCAACT-AACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGCAT
*
72909353 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
72909389 ATGCCCAAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
44 1 0.01
45 18 0.17
46 67 0.63
47 18 0.17
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGCAT
Found at i:72909381 original size:92 final size:93
Alignment explanation
Indices: 72909223--72909393 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
72909213 GCCCATAAGT
* *
72909223 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72909288 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
72909316 GAACTCGGACTCAACT-AACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72909380 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
72909394 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 57 0.78
93 16 0.22
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72911811 original size:30 final size:30
Alignment explanation
Indices: 72911776--72911856 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
72911766 TAACAAGAAA
*
72911776 AGAATAAAGAAATCCAAGATAGAGAAACCC
1 AGAATAAAGAAATCCAAGATAAAGAAACCC
* *
72911806 AGAATAAAGAAATCC-AGAATAAAGAGATCC
1 AGAATAAAGAAATCCAAG-ATAAAGAAACCC
* *
72911836 AGGATAAAGAAACCCAAGATA
1 AGAATAAAGAAATCCAAGATA
72911857 TGATACTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
29 2 0.05
30 40 0.91
31 2 0.05
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
AGAATAAAGAAATCCAAGATAAAGAAACCC
Found at i:72911816 original size:15 final size:15
Alignment explanation
Indices: 72911776--72911847 Score: 92
Period size: 15 Copynumber: 4.8 Consensus size: 15
72911766 TAACAAGAAA
72911776 AGAATAAAGAAATCC
1 AGAATAAAGAAATCC
* *
72911791 A-AGATAGAGAAACCC
1 AGA-ATAAAGAAATCC
72911806 AGAATAAAGAAATCC
1 AGAATAAAGAAATCC
*
72911821 AGAATAAAGAGATCC
1 AGAATAAAGAAATCC
*
72911836 AGGATAAAGAAA
1 AGAATAAAGAAA
72911848 CCCAAGATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 46 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.12, G:0.18, T:0.11
Consensus pattern (15 bp):
AGAATAAAGAAATCC
Found at i:72911856 original size:15 final size:15
Alignment explanation
Indices: 72911779--72911856 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72911769 CAAGAAAAGA
72911779 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72911794 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72911808 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72911823 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72911839 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72911854 ATA
1 ATA
72911857 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72914810 original size:46 final size:44
Alignment explanation
Indices: 72914743--72914916 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 44
72914733 TGTAACCCGC
72914743 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TT-GCAT
* *
72914789 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CTTGCAT
* *** * *
72914835 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTGCAT
*
72914881 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
72914917 ATGCCCAAAC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
44 1 0.01
45 30 0.28
46 46 0.43
47 28 0.26
48 2 0.02
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTGCAT
Found at i:72914909 original size:92 final size:93
Alignment explanation
Indices: 72914751--72914921 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
72914741 GCCCATAAGT
* *
72914751 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72914816 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
72914844 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72914908 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
72914922 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72916511 original size:21 final size:21
Alignment explanation
Indices: 72916482--72916521 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
72916472 GTTAAGATGA
*
72916482 CACACGGGCGTGTCGCCCTTC
1 CACACGGGCGTGTCCCCCTTC
*
72916503 CACATGGGCGTGTCCCCCT
1 CACACGGGCGTGTCCCCCT
72916522 GTTTGCATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.42, G:0.28, T:0.20
Consensus pattern (21 bp):
CACACGGGCGTGTCCCCCTTC
Found at i:72927068 original size:197 final size:194
Alignment explanation
Indices: 72926736--72927096 Score: 607
Period size: 197 Copynumber: 1.8 Consensus size: 194
72926726 CACCTTAGGT
*
72926736 TTGGGTGTCGTAACCAACACCCCATTACCCAAAGAAGTTTTGCAAATAATAAGCCCTCCTTTGAC
1 TTGGGTGTCGCAACCAACACCCCATTACCCAAAGAAGTTTTGCAAATAATAAGCCCTCCTTTGAC
* *
72926801 TCAATCTATTCCTTCGAAGTCGACACCACAACATCGAGAGCATCATCCCTTACTGTCAGCTTATC
66 TCAATATATTCCTTCGAAGTCGACACCACAACATCGAGAGCATCATCCCTTACTATCAGCTTATC
*
72926866 CACAATGGAATTGAACACCCATTGCATCTCTTTCACTTTCGAACTGAGAGCCTTCACCACAAGC
131 CACAATGGAATTGAACACCCATTGCATCACTTTCACTTTCGAACTGAGAGCCTTCACCACAAGC
*
72926930 TTGGGTGTCGCAACCAACACCCCATTACCCAAAGAAGTTTTGCAAATAATGAGCCC-CCTTTGAG
1 TTGGGTGTCGCAACCAACACCCCATTACCCAAAGAAGTTTTGCAAATAATAAGCCCTCCTTTGA-
* *
72926994 CTCTTCAATATGTTCTTTCGAAGTCGACACCACAACATCGAGAGCATCATCCCTTACTATCAGCT
65 --C-TCAATATATTCCTTCGAAGTCGACACCACAACATCGAGAGCATCATCCCTTACTATCAGCT
*
72927059 TCTCCACAATGGAATTGAACACCCATTGCATCACTTTC
127 TATCCACAATGGAATTGAACACCCATTGCATCACTTTC
72927097 TCATTGGAAC
Statistics
Matches: 155, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
193 7 0.05
194 54 0.35
196 1 0.01
197 93 0.60
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (194 bp):
TTGGGTGTCGCAACCAACACCCCATTACCCAAAGAAGTTTTGCAAATAATAAGCCCTCCTTTGAC
TCAATATATTCCTTCGAAGTCGACACCACAACATCGAGAGCATCATCCCTTACTATCAGCTTATC
CACAATGGAATTGAACACCCATTGCATCACTTTCACTTTCGAACTGAGAGCCTTCACCACAAGC
Found at i:72927873 original size:18 final size:18
Alignment explanation
Indices: 72927839--72927873 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72927829 AATATATTTA
*
72927839 TTTAATATTAATGTAAAC
1 TTTAATATAAATGTAAAC
*
72927857 TTTAATATAAATTTAAA
1 TTTAATATAAATGTAAA
72927874 TTATTATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
TTTAATATAAATGTAAAC
Found at i:72933993 original size:16 final size:16
Alignment explanation
Indices: 72933972--72934032 Score: 54
Period size: 16 Copynumber: 3.6 Consensus size: 16
72933962 AACAAAATTA
*
72933972 AAAAAATAAGATAAAT
1 AAAAAATAAAATAAAT
72933988 AAAAAATAAAATAAA-
1 AAAAAATAAAATAAAT
72934003 AATAAAATGAATAAT-AAT
1 AA-AAAAT-AA-AATAAAT
72934021 AATAACAATAAA
1 AA-AA-AATAAA
72934033 CTCGATGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
15 2 0.05
16 19 0.49
17 5 0.13
18 10 0.26
19 3 0.08
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAAAATAAAATAAAT
Found at i:72934001 original size:12 final size:12
Alignment explanation
Indices: 72933984--72934025 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
72933974 AAAATAAGAT
72933984 AAATAAAAAATA
1 AAATAAAAAATA
72933996 AAAT-AAAAATA
1 AAATAAAAAATA
* *
72934007 AAATGAATAATA
1 AAATAAAAAATA
72934019 ATAATAA
1 A-AATAA
72934026 CAATAAACTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 11 0.42
12 11 0.42
13 4 0.15
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:72934091 original size:11 final size:11
Alignment explanation
Indices: 72934072--72934205 Score: 69
Period size: 12 Copynumber: 11.7 Consensus size: 11
72934062 TTGTAATAAT
*
72934072 AATAGTAAAAA
1 AATAATAAAAA
72934083 AATAATAAAAA
1 AATAATAAAAA
72934094 AATAGA-AATAAA
1 AATA-ATAA-AAA
*
72934106 AA-AATAAAAT
1 AATAATAAAAA
72934116 AA-AATAAAAA
1 AATAATAAAAA
* * *
72934126 TATAAGTATAAG
1 AATAA-TAAAAA
72934138 AATAATAAATAAA
1 AATAAT-AA-AAA
72934151 ACATAAATAAAATA
1 A-AT-AATAAAA-A
* **
72934165 AAAAATAGTAA
1 AATAATAAAAA
*
72934176 AATAA-AAATA
1 AATAATAAAAA
*
72934186 AATAATATAACA
1 AATAATA-AAAA
72934198 AATAATAA
1 AATAATAA
72934206 TAAATAAAAA
Statistics
Matches: 94, Mismatches: 17, Indels: 24
0.70 0.13 0.18
Matches are distributed among these distances:
10 20 0.21
11 29 0.31
12 30 0.32
13 6 0.06
14 6 0.06
15 3 0.03
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (11 bp):
AATAATAAAAA
Found at i:72934097 original size:25 final size:23
Alignment explanation
Indices: 72934077--72934183 Score: 79
Period size: 24 Copynumber: 4.3 Consensus size: 23
72934067 ATAATAATAG
72934077 TAAAAAAATAATAAAAAAATAGAAA
1 TAAAAAAATAA-AAAAAAATA-AAA
*
72934102 TAAAAAAATAAAATAAAATAAAAA
1 TAAAAAAATAAAAAAAAAT-AAAA
* **
72934126 TATAAGTATAAGAATAATAAATAAAACA
1 TAAAAAAATAA-AA-AA-AAAT-AAA-A
* *
72934154 TAAATAAAATAAAAAATAGTAAAA
1 TAAA-AAAATAAAAAAAAATAAAA
72934178 TAAAAA
1 TAAAAA
72934184 TAAATAATAT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
23 2 0.03
24 23 0.35
25 17 0.26
26 3 0.05
27 10 0.15
28 6 0.09
29 5 0.08
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAAAAAATAAAAAAAAATAAAA
Found at i:72934106 original size:22 final size:22
Alignment explanation
Indices: 72934072--72934114 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
72934062 TTGTAATAAT
*
72934072 AATAGTAAAAAAATAATAAAAA
1 AATAGTAAAAAAAAAATAAAAA
72934094 AATAG-AAATAAAAAAATAAAA
1 AATAGTAAA-AAAAAAATAAAA
72934115 TAAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (22 bp):
AATAGTAAAAAAAAAATAAAAA
Found at i:72934109 original size:15 final size:14
Alignment explanation
Indices: 72934078--72934216 Score: 81
Period size: 15 Copynumber: 9.4 Consensus size: 14
72934068 TAATAATAGT
72934078 AAAAAAAT--AAT-
1 AAAAAAATAAAATA
72934089 AAAAAAATAGAAAT-
1 AAAAAAATA-AAATA
72934103 AAAAAAATAAAATAA
1 AAAAAAATAAAAT-A
72934118 AATAAAAATATAAGTATA
1 AA-AAAAATA-AA--ATA
* *
72934136 AGAATAAT-AAATA
1 AAAAAAATAAAATA
72934149 AAACATAAATAAAATA
1 AAA-A-AAATAAAATA
*
72934165 AAAAATAGTAAAATA
1 AAAAA-AATAAAATA
*
72934180 AAAATAAATAATATA
1 AAAA-AAATAAAATA
*
72934195 ACAAATAATAATAAATA
1 A-AAAAAAT-A-AAATA
72934212 AAAAA
1 AAAAA
72934217 TAGGGTGGCT
Statistics
Matches: 101, Mismatches: 10, Indels: 29
0.72 0.07 0.21
Matches are distributed among these distances:
11 8 0.08
13 9 0.09
14 14 0.14
15 31 0.31
16 23 0.23
17 12 0.12
18 2 0.02
19 2 0.02
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.20
Consensus pattern (14 bp):
AAAAAAATAAAATA
Found at i:72934117 original size:30 final size:28
Alignment explanation
Indices: 72934081--72934218 Score: 109
Period size: 30 Copynumber: 4.6 Consensus size: 28
72934071 TAATAGTAAA
72934081 AAAATAATAAAAAAATAGAAATAAAAAAAT
1 AAAATAA-AAAAAAATA-AAATAAAAAAAT
*
72934111 AAAATAAAATAAAAATATAAGTATAAGAATAAT
1 AAAATAAAA-AAAAATA-AA--ATAA-AAAAAT
*
72934144 -AAATAAAACATAAATAAAATAAAAAATAGT
1 AAAATAAAA-AAAAATAAAATAAAAAA-A-T
* * *
72934174 AAAATAAAAATAAATAATAT-AACAAAT
1 AAAATAAAAAAAAATAAAATAAAAAAAT
72934201 AATAATAAATAAAAAATA
1 AA-AATAAA-AAAAAATA
72934219 GGGTGGCTTG
Statistics
Matches: 91, Mismatches: 8, Indels: 19
0.77 0.07 0.16
Matches are distributed among these distances:
27 3 0.03
28 10 0.11
29 18 0.20
30 27 0.30
31 10 0.11
32 18 0.20
33 5 0.05
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (28 bp):
AAAATAAAAAAAAATAAAATAAAAAAAT
Found at i:72934119 original size:24 final size:25
Alignment explanation
Indices: 72934077--72934218 Score: 94
Period size: 25 Copynumber: 5.5 Consensus size: 25
72934067 ATAATAATAG
*
72934077 TAAAAAAATAATAAAAAAATAGAAA
1 TAAAAAAATAATAAAAAAATAAAAA
*
72934102 TAAAAAAATAA-AATAAAATAAAAA
1 TAAAAAAATAATAAAAAAATAAAAA
* ** *
72934126 TATAAGTATAAGAATAATAAATAAAACA
1 TAAAAAAATAATAA-AA-AAATAAAA-A
* *
72934154 TAAATAAAATAA-AAAATAGT-AAAA
1 TAAA-AAAATAATAAAAAAATAAAAA
* *
72934178 TAAAAATAAATAATATAACAAATAATAA
1 T-AAAA-AAATAATA-AAAAAATAAAAA
72934206 TAAATAAAA-AATA
1 TAAA-AAAATAATA
72934219 GGGTGGCTTG
Statistics
Matches: 91, Mismatches: 15, Indels: 21
0.72 0.12 0.17
Matches are distributed among these distances:
24 22 0.24
25 25 0.27
26 8 0.09
27 20 0.22
28 11 0.12
29 5 0.05
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (25 bp):
TAAAAAAATAATAAAAAAATAAAAA
Found at i:72934186 original size:44 final size:43
Alignment explanation
Indices: 72934105--72934219 Score: 119
Period size: 44 Copynumber: 2.6 Consensus size: 43
72934095 ATAGAAATAA
* *
72934105 AAAAATAAAATAAAAT-AAAAATA-TAAGTATAAGAATAATAAAT
1 AAAAAT-AAATAAAATAAAAAATAGTAA-AATAAAAATAATAAAT
72934148 AAAACATAAATAAAATAAAAAATAGTAAAATAAAAATAAATAATAT
1 AAAA-ATAAATAAAATAAAAAATAGTAAAATAAAAAT-AATAA-AT
72934194 AACAAAT-AATAATAAATAAAAAATAG
1 AA-AAATAAAT-A-AAATAAAAAATAG
72934220 GGTGGCTTGA
Statistics
Matches: 62, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
43 13 0.21
44 16 0.26
45 11 0.18
46 7 0.11
47 15 0.24
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.22
Consensus pattern (43 bp):
AAAAATAAATAAAATAAAAAATAGTAAAATAAAAATAATAAAT
Found at i:72934211 original size:63 final size:62
Alignment explanation
Indices: 72934093--72934214 Score: 169
Period size: 63 Copynumber: 2.0 Consensus size: 62
72934083 AATAATAAAA
*
72934093 AAATAGAAATAAAAAAATAAAATAAAATAAAAATATAAGTATAAGAATAATAAATAAAACAT
1 AAATAGAAATAAAAAAATAAAATAAAATAAAAATATAAGCATAAGAATAATAAATAAAACAT
*
72934155 AAATA-AAATAAAAAATAGTAAAATAAAAATAAATAATATAA-CA-AATAATAATAAATAAAA
1 AAATAGAAATAAAAAA-A-TAAAAT-AAAATAAA-AATATAAGCATAAGAATAATAAATAAAA
72934215 AATAGGGTGG
Statistics
Matches: 54, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
61 10 0.19
62 6 0.11
63 22 0.41
64 9 0.17
65 7 0.13
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (62 bp):
AAATAGAAATAAAAAAATAAAATAAAATAAAAATATAAGCATAAGAATAATAAATAAAACAT
Found at i:72936695 original size:40 final size:40
Alignment explanation
Indices: 72936611--72936792 Score: 147
Period size: 40 Copynumber: 4.5 Consensus size: 40
72936601 ACATTCAAAT
* * * *
72936611 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCACACGAAA
* * *
72936651 GCCTTCGGGACTTAACCCGGATTTAGTAGCTCACTCGAAA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACGAAA
* * * *
72936691 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTAT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCACACGAAA
* ** * *
72936731 GCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACGAAA
*
72936771 GCCTTCGGGACTTAGGCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
72936793 ATCATTCGAA
Statistics
Matches: 114, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 103 0.90
41 8 0.07
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACGAAA
Found at i:72936772 original size:80 final size:80
Alignment explanation
Indices: 72936611--72936792 Score: 194
Period size: 80 Copynumber: 2.3 Consensus size: 80
72936601 ACATTCAAAT
* * * *
72936611 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGGGACTTAGGCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTT
*
72936675 AGTAGCTCACTCGAAA
65 AGTAGCTCACACGAAA
* * **
72936691 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTATTCCGGATT
1 GCCTTCGGGA-CTTAGGCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTTAACCCGGATT
*
72936754 TAGTCA-CTTAGCAC-AAA
64 TAGT-AGCTCA-CACGAAA
72936771 GCCTTCGGGACTTAGGCCGGAT
1 GCCTTCGGGACTTAGGCCGGAT
72936793 ATCATTCGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
79 6 0.07
80 72 0.84
81 8 0.09
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGGCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTTA
GTAGCTCACACGAAA
Found at i:72939240 original size:42 final size:41
Alignment explanation
Indices: 72939122--72939240 Score: 111
Period size: 42 Copynumber: 2.8 Consensus size: 41
72939112 TACCATAACA
* *
72939122 ATGCCATATCCCAGATAT-GTCTT-ACATGGGATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTAACAT-AG-TCTCGTATCG
* *
72939163 ATGCCAATAGCCCA-ACTATGGTCTTAGACGA-AGTCTCTTATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTA-AC-ATAGTCTCGTATCG
72939206 ATGCCATATCCCAGATATGGTCTTACACATAGTCT
1 ATGCCATATCCCAGATATGGTCTTA-ACATAGTCT
72939241 TAATAGCTCT
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
41 7 0.11
42 34 0.53
43 19 0.30
44 1 0.02
45 2 0.03
46 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTAACATAGTCTCGTATCG
Found at i:72948950 original size:18 final size:18
Alignment explanation
Indices: 72948914--72948968 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 18
72948904 TATAAACACC
*
72948914 TATTATTTTTACTTT-TTT
1 TATTA-TTTTATTTTATTT
72948932 TATTATTTTATTTTA-TT
1 TATTATTTTATTTTATTT
72948949 T-TTATCTTTATTTATATTT
1 TATTAT-TTTATTT-TATTT
72948968 T
1 T
72948969 GGAATTACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
16 4 0.12
17 18 0.56
18 7 0.22
19 3 0.09
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (18 bp):
TATTATTTTATTTTATTT
Found at i:72952536 original size:12 final size:12
Alignment explanation
Indices: 72952519--72952543 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72952509 GCATGAGAAT
72952519 AAAACAAAATTC
1 AAAACAAAATTC
72952531 AAAACAAAATTC
1 AAAACAAAATTC
72952543 A
1 A
72952544 GGGATTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAACAAAATTC
Found at i:72976337 original size:40 final size:40
Alignment explanation
Indices: 72976225--72976377 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
72976215 GGATATAGCG
* * * * ***
72976225 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
72976265 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
72976305 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
72976345 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
72976378 CATCATTGAA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:72978900 original size:59 final size:60
Alignment explanation
Indices: 72978772--72978918 Score: 215
Period size: 59 Copynumber: 2.5 Consensus size: 60
72978762 AAATATACAA
** * * *
72978772 CAGGATTACCAGTCCAGGCTAAATTTTGTCTCCAATATATATTTACTTATTAGAGCTTAGT
1 CAGGATTACCAGTCCAGGCTAAATCCTATCTCCAATATATA-TTACTCAATAGAGCTTAGT
*
72978833 TAGGATTACCAGTCCAGGCTAAATCCTATCTCCAATATATA-TACTCAATAGAGCTTAGT
1 CAGGATTACCAGTCCAGGCTAAATCCTATCTCCAATATATATTACTCAATAGAGCTTAGT
*
72978892 CAGGATTACCAGTCCAAGCTAAATCCT
1 CAGGATTACCAGTCCAGGCTAAATCCT
72978919 TTTTATGACA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
59 41 0.53
61 37 0.47
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (60 bp):
CAGGATTACCAGTCCAGGCTAAATCCTATCTCCAATATATATTACTCAATAGAGCTTAGT
Found at i:72983903 original size:27 final size:27
Alignment explanation
Indices: 72983846--72983940 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
72983836 ATTTCTTTAG
* *
72983846 AGTTCACCATACGTACTATTC-CTTCAG
1 AGTTCACCATACATACTATTCTC-TCAA
* *
72983873 AGTTCATCATATATACTATTCTCTCAA
1 AGTTCACCATACATACTATTCTCTCAA
* * *
72983900 AGTTTACCATACCTACCATTCT-TCAA
1 AGTTCACCATACATACTATTCTCTCAA
72983926 AGTT-AGCCATACATA
1 AGTTCA-CCATACATA
72983941 TCATTCTTCT
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.02
26 16 0.29
27 38 0.68
28 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (27 bp):
AGTTCACCATACATACTATTCTCTCAA
Found at i:72984104 original size:27 final size:27
Alignment explanation
Indices: 72984074--72984144 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
72984064 CATATATCGG
* *
72984074 CACAAAAACTTCTATTTTATAGACTAC
1 CACAAAAACTTCCATTTCATAGACTAC
** *
72984101 CACAAAGGCTTCCATTTCATAGACTGC
1 CACAAAAACTTCCATTTCATAGACTAC
**
72984128 CACAAAGGCTTCCATTT
1 CACAAAAACTTCCATTT
72984145 TCTAGTGTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.30
Consensus pattern (27 bp):
CACAAAAACTTCCATTTCATAGACTAC
Found at i:72993207 original size:27 final size:28
Alignment explanation
Indices: 72993128--72993208 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 28
72993118 TGTGAAAAGG
*
72993128 AAAGGTATACTTTGTGTATACAACATGA
1 AAAGGTATACTTTGTGTGTACAACATGA
* *
72993156 AAAGGCTATGTACACTTTGTGTGTAC-ACTTGT
1 AAAGG-TA--T--ACTTTGTGTGTACAACATGA
72993188 AAAGGTATACTTTGTGTGTAC
1 AAAGGTATACTTTGTGTGTAC
72993209 CATTTGAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
27 13 0.29
28 5 0.11
29 3 0.07
31 3 0.07
32 9 0.20
33 12 0.27
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (28 bp):
AAAGGTATACTTTGTGTGTACAACATGA
Found at i:72993240 original size:60 final size:60
Alignment explanation
Indices: 72993128--72993241 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
72993118 TGTGAAAAGG
** * * *
72993128 AAAGGTATACTTTGTGTATACAACATGAAAAGGCTATGTACACTTTGTGTGTACACTTGT
1 AAAGGTATACTTTGTGTATACAACATGAAAAGGAAATGTACACCTCGAGTGTACACTTGT
* * **
72993188 AAAGGTATACTTTGTGTGTACCATTTGAAAAGGAAATGTACACCTCGAGTGTAC
1 AAAGGTATACTTTGTGTATACAACATGAAAAGGAAATGTACACCTCGAGTGTAC
72993242 TACTGGAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 45 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (60 bp):
AAAGGTATACTTTGTGTATACAACATGAAAAGGAAATGTACACCTCGAGTGTACACTTGT
Found at i:72996890 original size:30 final size:30
Alignment explanation
Indices: 72996854--72996910 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
72996844 CAAAAATTAT
72996854 ATTTTTACAAATTTGTA-TTTTGACCCCTAA
1 ATTTTTACAAATTTGTACTTTTG-CCCCTAA
* *
72996884 ATTTTTACATATTTTTACTTTTGCCCC
1 ATTTTTACAAATTTGTACTTTTGCCCC
72996911 AATGCTTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.25, C:0.19, G:0.05, T:0.51
Consensus pattern (30 bp):
ATTTTTACAAATTTGTACTTTTGCCCCTAA
Found at i:72998837 original size:48 final size:48
Alignment explanation
Indices: 72998766--72999095 Score: 314
Period size: 48 Copynumber: 6.9 Consensus size: 48
72998756 GACATTTGGG
* * *
72998766 TGACATGTGAGCTAGTGTAAGACCATGTCTGGTACATGGCTTCGGCCA-
1 TGACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAT
* * * * *
72998814 TGACATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGACAA
1 TGACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
*
72998862 TGTA-ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAT
1 TG-ACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
72998910 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
1 TGACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * *
72998958 TAACATGTGCGCTAGTAT-AGAACAATGTCTAGGACATGGCATCGGCCACAT
1 TGACATGAGAGCTAGTGTAAG-ACCATGTCTGGGACATGGCATCGG---CAT
* * * *
72999009 T---ATGAGA-CTGAGTGTAAAACGATGTCTGAGACATGGCATCAGCAT
1 TGACATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
** *
72999054 TGAGGTGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 TGACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
72999096 GTAACACCCC
Statistics
Matches: 233, Mismatches: 36, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
45 4 0.02
47 7 0.03
48 214 0.92
49 4 0.02
51 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (48 bp):
TGACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:72999034 original size:144 final size:144
Alignment explanation
Indices: 72998770--72999095 Score: 383
Period size: 144 Copynumber: 2.3 Consensus size: 144
72998760 TTTGGGTGAC
* * * * *
72998770 ATGTGAGCTAGTGTAAGACCATGTCTGGTACATGGCTTCGGCCATGACATGAGAGCTAGTGTAAG
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCATAACATGAGAGCTAGTATAAG
* * * *
72998835 ACCATGTTTAGAACATGGCATCGACAATGTAATGAGAGCTAGTGTAAGACCATGTCTGGGACATG
66 ACAATGTCTAGAACATGGCATCGACAATGTAATGAGAGCTAGTGTAAAACCATGTCTGAGACATG
* * *
72998900 GCATCGGTATTGAT
131 GCATCAGCATTGAG
* * *
72998914 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTAACATGTGCGCTAGTAT-A
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-TAACATGAGAGCTAGTATAA
* * *
72998977 GAACAATGTCTAGGACATGGCATCGGCCACAT-T-ATGAGA-CTGAGTGTAAAACGATGTCTGAG
65 G-ACAATGTCTAGAACATGGCATC-GACA-ATGTAATGAGAGCT-AGTGTAAAACCATGTCTGAG
72999039 ACATGGCATCAGCATTGAG
126 ACATGGCATCAGCATTGAG
* **
72999058 GTGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
72999096 GTAACACCCC
Statistics
Matches: 155, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
143 6 0.04
144 143 0.92
145 4 0.03
146 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (144 bp):
ATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCATAACATGAGAGCTAGTATAAG
ACAATGTCTAGAACATGGCATCGACAATGTAATGAGAGCTAGTGTAAAACCATGTCTGAGACATG
GCATCAGCATTGAG
Found at i:73006980 original size:50 final size:46
Alignment explanation
Indices: 73006909--73007030 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
73006899 TGTCTTCGAC
** * *
73006909 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC----ATATATCTAAT
* * *
73006959 ATGGGCTTACATGGCTCATTCCTATCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
*
73007005 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
73007031 CTGTCCGGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 33 0.53
50 29 0.47
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
Found at i:73009569 original size:11 final size:11
Alignment explanation
Indices: 73009549--73009588 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
73009539 CCCATAAGTG
*
73009549 AACTCGGACTC
1 AACTCAGACTC
73009560 AACTCAGACTC
1 AACTCAGACTC
*
73009571 GAACTCGGACTC
1 -AACTCAGACTC
73009583 AACTCA
1 AACTCA
73009589 ACGAGTTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.33, C:0.35, G:0.15, T:0.17
Consensus pattern (11 bp):
AACTCAGACTC
Found at i:73009685 original size:47 final size:49
Alignment explanation
Indices: 73009570--73009740 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 49
73009560 AACTCAGACT
* *
73009570 CGAACTCGGACTCAACTCAACGAGTTC-G--G-CGTTCGCATCCATAAG
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCATAAG
* *
73009615 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCCATAAG
*
73009662 CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAAG
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCATAAG
*
73009708 TGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGC
73009741 TCAACCATCC
Statistics
Matches: 105, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 28 0.27
46 30 0.29
47 29 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (49 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCATAAG
Found at i:73009722 original size:93 final size:92
Alignment explanation
Indices: 73009570--73009740 Score: 324
Period size: 93 Copynumber: 1.8 Consensus size: 92
73009560 AACTCAGACT
*
73009570 CGAACTCGGACTCAACTCAACGAGTTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73009635 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
73009662 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73009727 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
73009741 TCAACCATCC
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
92 29 0.38
93 48 0.62
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73009756 original size:46 final size:46
Alignment explanation
Indices: 73009571--73009749 Score: 165
Period size: 45 Copynumber: 3.9 Consensus size: 46
73009561 ACTCAGACTC
* * * *
73009571 GAACTCGGACTCAACTCAACGAGTTCGGCGTTCGCATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCATCTAAGT
* *
73009616 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTAAGT
* * *
73009663 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTAAGT
73009709 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
73009750 CTAGTGACAT
Statistics
Matches: 109, Mismatches: 12, Indels: 25
0.75 0.08 0.17
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 30 0.28
46 30 0.28
47 30 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAAGT
Found at i:73012159 original size:30 final size:30
Alignment explanation
Indices: 73012115--73012203 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
73012105 CAAAGATAAC
73012115 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
73012144 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
73012174 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
73012204 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:73012163 original size:15 final size:15
Alignment explanation
Indices: 73012115--73012194 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
73012105 CAAAGATAAC
*
73012115 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73012129 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
73012144 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
73012159 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73012174 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73012189 AAGAAA
1 AAGAAA
73012195 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73012203 original size:15 final size:15
Alignment explanation
Indices: 73012126--73012203 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
73012116 AGAAAACCGA
73012126 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
73012141 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
73012155 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
73012170 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
73012186 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
73012201 ATA
1 ATA
73012204 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:73015325 original size:46 final size:49
Alignment explanation
Indices: 73015195--73015332 Score: 182
Period size: 46 Copynumber: 2.9 Consensus size: 49
73015185 TCTCAACGGC
73015195 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTA
* * *
73015246 GTT-ACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
73015289 -TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73015333 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 29 0.38
47 29 0.38
48 2 0.03
49 1 0.01
50 3 0.04
51 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
Found at i:73015351 original size:46 final size:44
Alignment explanation
Indices: 73015208--73015351 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
73015198 CGCATCCATA
73015208 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
73015255 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
73015301 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
73015347 AGTGA
1 AGTGA
73015352 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:73018208 original size:14 final size:14
Alignment explanation
Indices: 73018189--73018216 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73018179 AACTTTGTGA
73018189 GCATCTCTTCAAGG
1 GCATCTCTTCAAGG
73018203 GCATCTCTTCAAGG
1 GCATCTCTTCAAGG
73018217 TTCGACTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (14 bp):
GCATCTCTTCAAGG
Found at i:73020354 original size:39 final size:40
Alignment explanation
Indices: 73020240--73020422 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
73020230 GCTACTCGTT
*
73020240 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
73020280 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
73020320 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
73020359 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
73020400 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
73020423 AACATCATTC
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 76 0.61
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73020408 original size:79 final size:80
Alignment explanation
Indices: 73020240--73020422 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
73020230 GCTACTCGTT
* * *
73020240 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
73020305 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* **
73020321 CAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCA
1 CAAAGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
*
73020383 GATATAGTCACTTAGCA-
64 GATATAGTAAC-TAGCAC
73020400 CAAAGCCTTCGGGACTTAGCCCG
1 CAAAGCCTTCGGGACTTAGCCCG
73020423 AACATCATTC
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.67
80 22 0.25
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:73028375 original size:39 final size:40
Alignment explanation
Indices: 73028263--73028482 Score: 272
Period size: 40 Copynumber: 5.5 Consensus size: 40
73028253 TACTCGTTCA
* * *
73028263 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACC
* *
73028303 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
73028343 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
*
73028382 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * *
73028421 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACC
*
73028461 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
73028483 ACATCATTGA
Statistics
Matches: 162, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 74 0.46
40 77 0.48
41 9 0.06
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:73028444 original size:118 final size:120
Alignment explanation
Indices: 73028263--73028482 Score: 306
Period size: 118 Copynumber: 1.9 Consensus size: 120
73028253 TACTCGTTCA
*
73028263 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
73028328 TTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
66 ATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* **
73028382 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
73028444 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCG
73028483 ACATCATTGA
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
117 4 0.04
118 60 0.67
119 25 0.28
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:73045376 original size:48 final size:47
Alignment explanation
Indices: 73045299--73045624 Score: 321
Period size: 48 Copynumber: 6.8 Consensus size: 47
73045289 CGGGACATGT
* * * *
73045299 GAGCTAGTGTAAGATCATGTCTGGGACATGGCTTTGGCCACGATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CACGATATGA
* * **
73045347 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATATAATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGAT-ATGA
* * * * * * *
73045395 GATCTAGTGTAAGACCATGTCTGGGAAATGACATCGACATTGATATGT
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CGATATGA
*
73045443 GTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACTGATATATGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC-G--ATATGA
* * * *
73045493 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTG-TGGTGA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CGAT-ATGA
* * * * *
73045541 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGACATGT
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CACGATATGA
* *
73045589 GAGGTAGTGTAAGACCATGTTTGGAACATGGCATCG
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
73045625 ACATTTCACC
Statistics
Matches: 225, Mismatches: 44, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
47 5 0.02
48 175 0.78
49 3 0.01
50 42 0.19
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGATATGA
Found at i:73045547 original size:98 final size:98
Alignment explanation
Indices: 73045299--73045629 Score: 372
Period size: 96 Copynumber: 3.4 Consensus size: 98
73045289 CGGGACATGT
* * * * * * *
73045299 GAGCTAGTGTAAGATCATGTCTGGGACATGGCTTTGGCCA-CGATATGAGAGCCAGTGTAAGACC
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGC-ATCGACATTGATATGAGAGCTAGTGTAAGACC
* *
73045363 ATGTTTGGAACATGGCATCGGCAAT-ATA-ATGA
65 ATGTTTGGGACATGGCATCGGCACTGATATATGA
* * * * * *
73045395 GATCTAGTGTAAGACCATGTCTGGGAAATGACATCGACATTGATATGTGTGCTAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCA
73045460 TGTTTGGGACATGGCATCGGCACTGATATATGA
66 TGTTTGGGACATGGCATCGGCACTGATATATGA
* *
73045493 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-AGCATTG-TGGTGAGAGCTAGTGTAAGAC
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGA-CATTGAT-ATGAGAGCTAGTGTAAGAC
* * * *
73045556 CATGTCTGGGACATGGCATTGGC-CTCGACATGTGA
64 CATGTTTGGGACATGGCATCGGCACT-GATATATGA
*
73045591 G-G-TAGTGTAAGACCATGTTTGGAACATGGCATCGACATT
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATT
73045630 TCACCCTTTT
Statistics
Matches: 201, Mismatches: 27, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
95 4 0.02
96 104 0.52
97 9 0.04
98 84 0.42
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (98 bp):
GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCA
TGTTTGGGACATGGCATCGGCACTGATATATGA
Found at i:73045557 original size:146 final size:144
Alignment explanation
Indices: 73045292--73045624 Score: 443
Period size: 146 Copynumber: 2.3 Consensus size: 144
73045282 GACATTTCGG
* * * *
73045292 GACATGTGAGCTAGTGTAAGATCATGTCTGGGACATGGCTTTGGCCACGATATGAGAGCCAGTGT
1 GACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGT
* *
73045357 AAGACCATGTTTGGAACATGGCATCGGCAATATAATGAGATCTAGTGTAAGACCATGTCTGGGAA
66 AAGACCATGTTTGGAACATGGCATCAGCAATATAATGAGAGCTAGTGTAAGACCATGTCTGGGAA
*
73045422 ATGACATCGACATT
131 ATGACATCGACATC
* *
73045436 GATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CACTGATATATGAGAGCCAG
1 GACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCAC-G--ATATGAGAGCCAG
* * * **
73045500 TGTAAGACCATGTTTGGGACATGGCATCAGCATTGTGGTGAGAGCTAGTGTAAGACCATGTCTGG
63 TGTAAGACCATGTTTGGAACATGGCATCAGCAATATAATGAGAGCTAGTGTAAGACCATGTCTGG
* * * * *
73045565 GACATGGCATTGGCCTC
128 GAAATGACATCGACATC
* *
73045582 GACATGTGAGGTAGTGTAAGACCATGTTTGGAACATGGCATCG
1 GACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
73045625 ACATTTCACC
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
143 3 0.02
144 39 0.24
146 121 0.74
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (144 bp):
GACATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCAGCAATATAATGAGAGCTAGTGTAAGACCATGTCTGGGAA
ATGACATCGACATC
Found at i:73050336 original size:13 final size:13
Alignment explanation
Indices: 73050320--73050344 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73050310 ACCTAACCCA
73050320 ACCCAACCCAATT
1 ACCCAACCCAATT
73050333 ACCCAACCCAAT
1 ACCCAACCCAAT
73050345 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:73050382 original size:5 final size:6
Alignment explanation
Indices: 73050369--73050421 Score: 70
Period size: 6 Copynumber: 8.5 Consensus size: 6
73050359 ATAATTTAAT
* *
73050369 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
73050419 AAA
1 AAA
73050422 ACATTTAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:73050463 original size:9 final size:9
Alignment explanation
Indices: 73050441--73050526 Score: 84
Period size: 9 Copynumber: 9.6 Consensus size: 9
73050431 TTTATACAAA
73050441 TAATTCGGT
1 TAATTCGGT
* *
73050450 CAATTTGGT
1 TAATTCGGT
* *
73050459 TAATTTGGG
1 TAATTCGGT
* *
73050468 TAATTTGGG
1 TAATTCGGT
73050477 TAATTCAGG-
1 TAATTC-GGT
73050486 TAATTCGGT
1 TAATTCGGT
* *
73050495 TAGTTCGAT
1 TAATTCGGT
73050504 TAATTCGGT
1 TAATTCGGT
73050513 TAATTCGGT
1 TAATTCGGT
73050522 TAATT
1 TAATT
73050527 TTATACTTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
8 2 0.03
9 62 0.94
10 2 0.03
ACGTcount: A:0.24, C:0.08, G:0.23, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:73052282 original size:9 final size:9
Alignment explanation
Indices: 73052268--73052330 Score: 56
Period size: 9 Copynumber: 6.8 Consensus size: 9
73052258 TTCACATCCT
73052268 TCTCTCAAC
1 TCTCTCAAC
*
73052277 TCTCTCAAT
1 TCTCTCAAC
* *
73052286 TTTCTCAAAT
1 TCTCTC-AAC
73052296 TCTCTCAAAC
1 TCTCTC-AAC
*
73052306 CCTCTCAAGC
1 TCTCTCAA-C
73052316 -CTCTCAAC
1 TCTCTCAAC
73052324 TCTCTCA
1 TCTCTCA
73052331 TTTTTAATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
8 1 0.02
9 28 0.61
10 17 0.37
ACGTcount: A:0.24, C:0.40, G:0.02, T:0.35
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:73056984 original size:77 final size:78
Alignment explanation
Indices: 73056889--73057038 Score: 232
Period size: 77 Copynumber: 1.9 Consensus size: 78
73056879 AATGTTCGAG
*
73056889 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AGGCTATGATATCCGGGCTAAG-CCGAAGGC
1 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGA-GCTATGATATCCGGGCTAAGTCCGAAGGC
73056952 AATTGTGCGAGCTA
65 AATTGTGCGAGCTA
* * *
73056966 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCGAAGGCA
1 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCGAAGGCA
*
73057031 TTTGTGCG
66 ATTGTGCG
73057039 GGTTACCATA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
77 49 0.74
78 17 0.26
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (78 bp):
TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCGAAGGCA
ATTGTGCGAGCTA
Found at i:73057054 original size:39 final size:39
Alignment explanation
Indices: 73056889--73057038 Score: 223
Period size: 39 Copynumber: 3.9 Consensus size: 39
73056879 AATGTTCGAG
73056889 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AGGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA-GCTA
73056928 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
73056966 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
73057005 TGATATCCGGGTTAAGTCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG
73057039 GGTTACCATA
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 35 0.34
39 67 0.66
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:73058644 original size:29 final size:29
Alignment explanation
Indices: 73058603--73058704 Score: 177
Period size: 29 Copynumber: 3.5 Consensus size: 29
73058593 AAAATTGTAC
*
73058603 AGCACTAAGTGTGTGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
73058632 AGCACTTAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
73058661 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
73058690 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73058705 GATTCACTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:73064959 original size:18 final size:19
Alignment explanation
Indices: 73064938--73064973 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73064928 AATAAAGAAA
*
73064938 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
73064956 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
73064974 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:73065826 original size:2 final size:2
Alignment explanation
Indices: 73065819--73065843 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73065809 CGTGATGCCC
73065819 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
73065844 CACATAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73066364 original size:29 final size:29
Alignment explanation
Indices: 73066322--73066451 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
73066312 AAAATTGTAC
73066322 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
73066351 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
73066380 AGCACTAAGTGTGCG-ACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
73066408 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
73066437 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73066452 GATTCACTAT
Statistics
Matches: 99, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
28 28 0.28
29 71 0.72
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:73066410 original size:57 final size:58
Alignment explanation
Indices: 73066322--73066451 Score: 244
Period size: 57 Copynumber: 2.3 Consensus size: 58
73066312 AAAATTGTAC
73066322 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
*
73066380 AGCACTAAGTGTGCG-ACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
73066437 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73066452 GATTCACTAT
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
57 56 0.79
58 15 0.21
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:73067172 original size:26 final size:26
Alignment explanation
Indices: 73067141--73067205 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
73067131 TGTATTATGT
73067141 ATGATGAAATAGTTGGCCATGGAAGA
1 ATGATGAAATAGTTGGCCATGGAAGA
73067167 ATGATGAAATAGTTGGCCATGGAAGA
1 ATGATGAAATAGTTGGCCATGGAAGA
*
73067193 ATTATGAAATAGT
1 ATGATGAAATAGT
73067206 CATTGTTTGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.40, C:0.06, G:0.28, T:0.26
Consensus pattern (26 bp):
ATGATGAAATAGTTGGCCATGGAAGA
Found at i:73071730 original size:15 final size:16
Alignment explanation
Indices: 73071701--73071730 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73071691 CAAACATGTT
73071701 TTAACACATTATCAAA
1 TTAACACATTATCAAA
73071717 TTAACACA-TATCAA
1 TTAACACATTATCAA
73071731 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:73073201 original size:137 final size:138
Alignment explanation
Indices: 73072954--73073228 Score: 381
Period size: 137 Copynumber: 2.0 Consensus size: 138
73072944 AGCTATAAAA
* * ** * * *
73072954 TGGGTCTACTTACACAAGTTGTTGGTCGGAATGTAAGCTACAAGATGTTTCTCACACAAGCTTTC
1 TGGGTCTACTTACACAAGCTATTGGTCAAAATGTAAGCTACAAGATGCTGCTCACACAAGCTGTC
* * * * * *
73073019 GTGTATCAACAACTCATTCCAAACCTTAGCCATCGGTAGGACATTCAAGACCAGCACCCAAAACA
66 GAGCATCAACAACTAATACCAAACCTCAGCCATCGATAGGACATTCAAGACCAGCACCCAAAACA
73073084 TGGTAACC
131 TGGTAACC
*
73073092 TGGGTCTACTTACACAAGCTATTGGTCAAAATGT-AGCTACACGATGCTGCTCACACAAGCTGTC
1 TGGGTCTACTTACACAAGCTATTGGTCAAAATGTAAGCTACAAGATGCTGCTCACACAAGCTGTC
** **
73073156 GAGCATCTGCAACTAATACCGGACCTCAGCCATCGATAGGACATTCAAGACCAGCACCCAAAACA
66 GAGCATCAACAACTAATACCAAACCTCAGCCATCGATAGGACATTCAAGACCAGCACCCAAAACA
73073221 TGGTAACC
131 TGGTAACC
73073229 CTATTGACAT
Statistics
Matches: 119, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
137 89 0.75
138 30 0.25
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.23
Consensus pattern (138 bp):
TGGGTCTACTTACACAAGCTATTGGTCAAAATGTAAGCTACAAGATGCTGCTCACACAAGCTGTC
GAGCATCAACAACTAATACCAAACCTCAGCCATCGATAGGACATTCAAGACCAGCACCCAAAACA
TGGTAACC
Found at i:73079980 original size:6 final size:6
Alignment explanation
Indices: 73079969--73080022 Score: 99
Period size: 6 Copynumber: 9.0 Consensus size: 6
73079959 ATTGTCATTA
*
73079969 TATATG TATATG TATATG TATATG TATATG TATATA TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
73080017 TATATG
1 TATATG
73080023 ATACGATCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:73081574 original size:14 final size:14
Alignment explanation
Indices: 73081552--73081599 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
73081542 ACCTAAACCG
* *
73081552 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
73081566 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
73081580 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
73081594 ACCATT
1 ACCATT
73081600 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:73081991 original size:10 final size:11
Alignment explanation
Indices: 73081967--73082005 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
73081957 TATACAAGTT
73081967 AAAAAAAATCA
1 AAAAAAAATCA
*
73081978 AAAAAAATTCA
1 AAAAAAAATCA
73081989 AAAAAAAA--A
1 AAAAAAAATCA
73081998 AAAAAAAA
1 AAAAAAAA
73082006 AAAAAAAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 9 0.35
11 17 0.65
ACGTcount: A:0.87, C:0.05, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATCA
Found at i:73081992 original size:1 final size:1
Alignment explanation
Indices: 73081988--73082012 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
73081978 AAAAAAATTC
73081988 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
73082013 GTGATTTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:73088462 original size:14 final size:14
Alignment explanation
Indices: 73088440--73088487 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
73088430 ACCTAAACCG
* *
73088440 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
73088454 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
73088468 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
73088482 ACCATT
1 ACCATT
73088488 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:73092918 original size:42 final size:41
Alignment explanation
Indices: 73092872--73093019 Score: 161
Period size: 42 Copynumber: 3.5 Consensus size: 41
73092862 TAAGATTACG
* *
73092872 TGTAAGACCATATCTGGGATATGACATCGACATGAGGCTTCG
1 TGTAAGACCATATCTGGGATATGACATCGATATGA-GCTTCA
* *
73092914 TGTAAGACCATATCTGGGATATGGCATCGATATGAAACTTCA
1 TGTAAGACCATATCTGGGATATGACATCGATATG-AGCTTCA
* * * * * *
73092956 TGTGAGACCATAGCTGGGCTATTAGCATCGATACGAGATTACA
1 TGTAAGACCATATCTGGGATATGA-CATCGATATGAGCTT-CA
*
73092999 TGGAAGACCATATCTGGGATA
1 TGTAAGACCATATCTGGGATA
73093020 AGGCATTGAT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
42 58 0.67
43 29 0.33
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGACATCGATATGAGCTTCA
Found at i:73096629 original size:6 final size:6
Alignment explanation
Indices: 73096618--73096657 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
73096608 CAATCACATA
73096618 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTT
73096658 TGAGAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTAT
Found at i:73096926 original size:2 final size:2
Alignment explanation
Indices: 73096913--73096944 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
73096903 TATAATGACT
73096913 TA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA T
73096945 GATTGGATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:73103117 original size:23 final size:24
Alignment explanation
Indices: 73103091--73103144 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
73103081 AAGCTCTATT
*
73103091 GAGCTGA-AACAGTAAGCTCTGAC
1 GAGCTGAGAACAGTAACCTCTGAC
* *
73103114 GAGCTGAGAATAGTAACCTCTTAC
1 GAGCTGAGAACAGTAACCTCTGAC
73103138 GAGCTGA
1 GAGCTGA
73103145 TATAACGGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.20
Consensus pattern (24 bp):
GAGCTGAGAACAGTAACCTCTGAC
Found at i:73113146 original size:23 final size:24
Alignment explanation
Indices: 73113133--73113182 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
73113123 ATGCTCTATT
73113133 GAGCTAA-AACAGTAAGCTCTGAC
1 GAGCTAAGAACAGTAAGCTCTGAC
* *
73113156 GAGCTAAGAACAGTAACCTCTTAC
1 GAGCTAAGAACAGTAAGCTCTGAC
73113180 GAG
1 GAG
73113183 TTGATATATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (24 bp):
GAGCTAAGAACAGTAAGCTCTGAC
Found at i:73114258 original size:13 final size:13
Alignment explanation
Indices: 73114240--73114273 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
73114230 CCGTTTCCAT
73114240 CACACGGCTGTGA
1 CACACGGCTGTGA
73114253 CACACGGCTGTGA
1 CACACGGCTGTGA
73114266 CACACGGC
1 CACACGGC
73114274 CGTGTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.35, G:0.29, T:0.12
Consensus pattern (13 bp):
CACACGGCTGTGA
Found at i:73123486 original size:40 final size:39
Alignment explanation
Indices: 73123442--73123622 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73123432 GTTCAAAACA
* * ** * *
73123442 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73123482 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73123522 CCTTCGGGCTTAGCCCGG-TATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
73123560 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73123599 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73123623 CTCGAACATT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 36 0.28
39 53 0.41
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73123592 original size:77 final size:79
Alignment explanation
Indices: 73123472--73123622 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
73123462 TATGGTAACC
73123472 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
73123537 CGG-TATCATAGCT
66 CGGATATCATAGCT
* * * *
73123550 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
73123614 CGGATATCA
66 CGGATATCA
73123623 CTCGAACATT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 46 0.68
78 22 0.32
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:73123594 original size:39 final size:39
Alignment explanation
Indices: 73123472--73123622 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
73123462 TATGGTAACC
* * * *
73123472 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
73123512 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
73123550 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
73123589 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
73123623 CTCGAACATT
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 36 0.34
39 53 0.50
40 17 0.16
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:73129104 original size:40 final size:40
Alignment explanation
Indices: 73129060--73129141 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
73129050 ATTAAATGTG
*
73129060 TTCATTTCCTTTATAGGTTCAGCCGAATATGGAAGTGCAT
1 TTCATTTCATTTATAGGTTCAGCCGAATATGGAAGTGCAT
* * *
73129100 TTCATTTCATTTGTAGGTTCAGTCGAATATTGAAGTGCAT
1 TTCATTTCATTTATAGGTTCAGCCGAATATGGAAGTGCAT
73129140 TT
1 TT
73129142 AAGGCTAGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (40 bp):
TTCATTTCATTTATAGGTTCAGCCGAATATGGAAGTGCAT
Found at i:73130435 original size:47 final size:44
Alignment explanation
Indices: 73130377--73130590 Score: 207
Period size: 47 Copynumber: 4.6 Consensus size: 44
73130367 GAGGCTGATA
*
73130377 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGT-CAATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCA--T-AATGTGCGATG
* * *
73130423 TCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCATAATGT-G-CGATG
* *
73130471 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATG-CCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTC--AT-AATGTGCGATG
* * *
73130517 CCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCATAATGT-G-CGATG
73130565 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
73130591 ATCACACAAG
Statistics
Matches: 139, Mismatches: 16, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
45 9 0.06
46 33 0.24
47 52 0.37
48 41 0.29
49 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATAATGTGCGATG
Found at i:73130487 original size:94 final size:94
Alignment explanation
Indices: 73130377--73130590 Score: 374
Period size: 94 Copynumber: 2.3 Consensus size: 94
73130367 GAGGCTGATA
* * * *
73130377 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGTCAATGTCATGTCTCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGCCAATGCCATGTCCCAAACATGGTC
73130442 TTACACTGGCTCTCATAATGTGGCCGATG
66 TTACACTGGCTCTCATAATGTGGCCGATG
* *
73130471 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCATGTCCCAAACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGCCAATGCCATGTCCCAAACATGGTC
73130536 TTACACTGGCTCTCATAATGTGGCCGATG
66 TTACACTGGCTCTCATAATGTGGCCGATG
73130565 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
73130591 ATCACACAAG
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 114 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGCCAATGCCATGTCCCAAACATGGTC
TTACACTGGCTCTCATAATGTGGCCGATG
Found at i:73133850 original size:5 final size:5
Alignment explanation
Indices: 73133840--73133867 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
73133830 TGCATGAATG
73133840 AAACA AAACA AAACA AAACA AAACA AAA
1 AAACA AAACA AAACA AAACA AAACA AAA
73133868 TAAGGGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:73139714 original size:39 final size:39
Alignment explanation
Indices: 73139626--73139854 Score: 361
Period size: 40 Copynumber: 5.8 Consensus size: 39
73139616 GGATATAGCT
*
73139626 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGTA
** *
73139666 GTTCACACAAATGCCTTCGGGACTTAG-CCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGTA
73139705 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
73139744 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TAGTA
*
73139784 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TAGTA
*
73139824 ACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
73139855 TTATCATCCG
Statistics
Matches: 178, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 76 0.43
40 102 0.57
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
Found at i:73139776 original size:79 final size:79
Alignment explanation
Indices: 73139614--73139854 Score: 371
Period size: 79 Copynumber: 3.0 Consensus size: 79
73139604 TCGGATTTAA
* ** *
73139614 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCACACAAAT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAAT
73139678 GCCTTCGGGACTTAG-
64 GCCTTCGGGACTTAGC
73139693 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGC
73139758 CTTCGGGACTTAGC
66 CTTCGGGACTTAGC
* *
73139772 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAAT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAAT
73139836 GCCTTCGGGACTTAGC
64 GCCTTCGGGACTTAGC
73139852 CCG
1 CCG
73139855 TTATCATCCG
Statistics
Matches: 152, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
78 32 0.21
79 86 0.57
80 34 0.22
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGC
CTTCGGGACTTAGC
Found at i:73147696 original size:40 final size:40
Alignment explanation
Indices: 73147633--73147875 Score: 341
Period size: 40 Copynumber: 6.1 Consensus size: 40
73147623 CGAGATTTAA
* *
73147633 CCGGATATAGCT-ACTCGCTCAAATGCCTTTGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
**
73147673 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
73147713 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73147753 CCAGAAATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
73147792 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
73147832 CCAGA-ATTAGTCACTAGCACAAATGCCTTCGAGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
73147872 CCGG
1 CCGG
73147876 TTATCATCCG
Statistics
Matches: 186, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 37 0.20
40 148 0.80
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73147830 original size:119 final size:120
Alignment explanation
Indices: 73147645--73147873 Score: 347
Period size: 119 Copynumber: 1.9 Consensus size: 120
73147635 GGATATAGCT
* * **
73147645 ACTCGCTCAAATGCCTTTGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* * *
73147710 AGCCC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAAATAGTA
66 AGCCCAGAAT-TAGTAACTAGCACAAATGCCTTCGAGACTTAGCCCAGAAATAGTA
73147765 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACT
*
73147828 TAGCCCAGAATTAGTCACTAGCACAAATGCCTTCGAGACTTAGCCC
65 TAGCCCAGAATTAGTAACTAGCACAAATGCCTTCGAGACTTAGCCC
73147874 GGTTATCATC
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
118 1 0.01
119 76 0.77
120 22 0.22
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCAGAATTAGTAACTAGCACAAATGCCTTCGAGACTTAGCCCAGAAATAGTA
Found at i:73155740 original size:17 final size:15
Alignment explanation
Indices: 73155710--73155743 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
73155700 ATTCGAGCAA
73155710 AAAGAAAAGAAGAAG
1 AAAGAAAAGAAGAAG
73155725 AAAGAAAACGGAAGAAG
1 AAAGAAAA--GAAGAAG
73155742 AA
1 AA
73155744 GCAATGGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.71, C:0.03, G:0.26, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAGAAG
Found at i:73163028 original size:29 final size:28
Alignment explanation
Indices: 73162996--73163079 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 28
73162986 AGCAAATTAA
*
73162996 TTTTTTTCTTTTATGTTCTTTTAACTTTC
1 TTTTTTTCTTTTAT-TTCTTTTAACCTTC
* **
73163025 TTTTTTTCTATTATCTTCTTCTTCTCCTTC
1 TTTTTTTCTTTTAT-TTCTT-TTAACCTTC
* *
73163055 TGTTTTCCTTTTCATTTCTTTTAAC
1 TTTTTTTCTTTT-ATTTCTTTTAAC
73163080 GTAGTTTTTC
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
29 21 0.49
30 20 0.47
31 2 0.05
ACGTcount: A:0.10, C:0.20, G:0.02, T:0.68
Consensus pattern (28 bp):
TTTTTTTCTTTTATTTCTTTTAACCTTC
Found at i:73163847 original size:22 final size:22
Alignment explanation
Indices: 73163805--73163848 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
73163795 CCGAGAACCG
* *
73163805 ACTAAATCGTAGCTCTGATACC
1 ACTAAATCGTAACACTGATACC
73163827 ACTAAAT-GTAACACTGTATACC
1 ACTAAATCGTAACACTG-ATACC
73163849 CTTAATCCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (22 bp):
ACTAAATCGTAACACTGATACC
Found at i:73180575 original size:39 final size:39
Alignment explanation
Indices: 73180468--73180790 Score: 368
Period size: 40 Copynumber: 8.1 Consensus size: 39
73180458 CAGAATTTAA
** *
73180468 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGC
* *
73180508 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* *
73180548 CCGG-TATAATAACTCGCACAAACGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
*
73180587 CCGGGAT-TAGTAACTCGCACAAACGCCTTCGGACTTAGC
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
*
73180626 CCGGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
73180666 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
73180706 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* * *
73180746 CCGGATGTAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGC
73180786 CCGGA
1 CCGGA
73180791 CATCATTCGA
Statistics
Matches: 261, Mismatches: 15, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
39 80 0.31
40 169 0.65
41 12 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:73180587 original size:79 final size:78
Alignment explanation
Indices: 73180487--73180789 Score: 346
Period size: 79 Copynumber: 3.8 Consensus size: 78
73180477 GCTACTCGTT
* *
73180487 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGATCTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCG
*
73180551 GTATAATAACTCGCA
64 GTATAGTAACTCGCA
* * *
73180566 CAAACGCCTTCGGGA-CTTAGCCCGG-GATTAGTAACTCGCACAAACGCCTTCGGACTTAGCCCG
1 CAAATGCCTTC-GGATCTTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGACTTAGCCCG
*
73180629 GGATTAGTAACTCGCA
64 GTA-TAGTAACTCGCA
* *
73180645 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGATCTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGA-CTTAGCCCG
*
73180709 GATTTAGTAACTCGCA
64 G-TATAGTAACTCGCA
* * * * *
73180725 CAAATGCCTTCGGATCTTAGTCCGGATGTAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCCCG
73180789 G
64 G
73180790 ACATCATTCG
Statistics
Matches: 196, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
78 18 0.09
79 100 0.51
80 67 0.34
81 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGATCTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGT
ATAGTAACTCGCA
Found at i:73188758 original size:40 final size:39
Alignment explanation
Indices: 73188714--73188935 Score: 211
Period size: 40 Copynumber: 5.6 Consensus size: 39
73188704 GCTACTCGTT
* *
73188714 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
73188754 CAAATGCCTTCGGGACTTA-CCCGG-ATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
73188791 CAAACGCCTTCGGGACTTAGCTCGGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* * *
73188831 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCGCA
* * * *
73188871 CAAATGCCTTC-GGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCG-GTATAGTAAC-TCGCA
**
73188912 CAAA-GCCTTTAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
73188936 ACATCATTCG
Statistics
Matches: 154, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
37 29 0.19
38 4 0.03
39 9 0.06
40 102 0.66
41 10 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:73188823 original size:77 final size:79
Alignment explanation
Indices: 73188714--73188936 Score: 244
Period size: 77 Copynumber: 2.8 Consensus size: 79
73188704 GCTACTCGTT
* *
73188714 CAAATGCCTTCGGGACATAGC-CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTA-CCCG
1 CAAATGCCTTCGGGACTTAGCTCCGGATATAGTAACTTGCACAAATGCCTTC-GGACTTAGCCCG
*
73188777 GA-TAATAACTCGCA
65 GATTAATAACTCACA
* * * *
73188791 CAAACGCCTTCGGGACTTAGCTCGGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCTCCGGATATAGTAACTTGCACAAATGCCTTCGGA-CTTAGCCCG
*
73188855 GATTTAGTAACTCACA
65 GA-TTAATAACTCACA
* * *
73188871 CAAATGCCTTC-GGATCTTAG-TCCGAATATAGTCACTTAGCACAAA-GCCTTTAGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCTCCGGATATAGTAACTT-GCACAAATGCC-TTCGGACTTAGCC
73188933 CGGA
63 CGGA
73188937 CATCATTCGA
Statistics
Matches: 122, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
76 3 0.02
77 45 0.37
78 9 0.07
79 8 0.07
80 45 0.37
81 12 0.10
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCTCCGGATATAGTAACTTGCACAAATGCCTTCGGACTTAGCCCGG
ATTAATAACTCACA
Found at i:73201010 original size:43 final size:43
Alignment explanation
Indices: 73200963--73201097 Score: 118
Period size: 42 Copynumber: 3.2 Consensus size: 43
73200953 TATATGGGAT
* *
73200963 CTCATATCGATGCCAATAG-CCCAG-CTTTGGTCTTACACGAAAA
1 CTCATAACGATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAAAA
* * *
73201006 CTCATAACGATACC-ATGTCCTAGACATGGTCTTACACGAAAT
1 CTCATAACGATGCCAATGTCCCAGACATGGTCTTACACGAAAA
* * * *
73201048 CTCATAACGATGCC-ATATCCTAGATATAGTCTTACAC-ATAAA
1 CTCATAACGATGCCAATGTCCCAGACATGGTCTTACACGA-AAA
*
73201090 CTTATAAC
1 CTCATAAC
73201098 CCTAATGTCA
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
41 2 0.03
42 63 0.81
43 13 0.17
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (43 bp):
CTCATAACGATGCCAATGTCCCAGACATGGTCTTACACGAAAA
Found at i:73201040 original size:42 final size:42
Alignment explanation
Indices: 73200990--73201097 Score: 146
Period size: 42 Copynumber: 2.6 Consensus size: 42
73200980 AGCCCAGCTT
*
73200990 TGGTCTTACACGAAAACTCATAACGATACCATGTCCTAGACA
1 TGGTCTTACACGAAAACTCATAACGATACCATATCCTAGACA
* * *
73201032 TGGTCTTACACGAAATCTCATAACGATGCCATATCCTAGATA
1 TGGTCTTACACGAAAACTCATAACGATACCATATCCTAGACA
* *
73201074 TAGTCTTACAC-ATAAACTTATAAC
1 TGGTCTTACACGA-AAACTCATAAC
73201098 CCTAATGTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 1 0.02
42 57 0.98
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (42 bp):
TGGTCTTACACGAAAACTCATAACGATACCATATCCTAGACA
Found at i:73201812 original size:39 final size:39
Alignment explanation
Indices: 73201766--73201843 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
73201756 GATCAGGTGA
73201766 ATACGACTTCAAATATGTAA-AGAGCATTAAAAACGAGGC
1 ATACGACTTCAAATATGTAATA-AGCATTAAAAACGAGGC
73201805 ATACGACTTCAAATATGTAATAAGCATTAAAAACGAGGC
1 ATACGACTTCAAATATGTAATAAGCATTAAAAACGAGGC
73201844 TAGGATGCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 37 0.97
40 1 0.03
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (39 bp):
ATACGACTTCAAATATGTAATAAGCATTAAAAACGAGGC
Found at i:73203349 original size:23 final size:23
Alignment explanation
Indices: 73203320--73203379 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
73203310 GGTTGAGCCT
73203320 CACACGCCCGTGTGGAGGCAATA
1 CACACGCCCGTGTGGAGGCAATA
* *
73203343 CACACGCCCGCGTGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAATA
*
73203366 CACACTCCCGTGTG
1 CACACGCCCGTGTG
73203380 CTTTGGGACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.22, C:0.35, G:0.30, T:0.13
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAATA
Found at i:73203563 original size:40 final size:40
Alignment explanation
Indices: 73203474--73203555 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
73203464 CCAAGCACAT
* * *
73203474 GCCCGTGTCCCTCACACGGCTTAGACAAGCCTGTGTTCTC
1 GCCCGTGTCCCTCACACGGCCTAGACAAGCCCGTGTCCTC
* *
73203514 GCCCGTGTCCCTCACATGGCCTAGACACGCCCGTGTCCTC
1 GCCCGTGTCCCTCACACGGCCTAGACAAGCCCGTGTCCTC
73203554 GC
1 GC
73203556 TTGTGTCCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.13, C:0.41, G:0.23, T:0.22
Consensus pattern (40 bp):
GCCCGTGTCCCTCACACGGCCTAGACAAGCCCGTGTCCTC
Found at i:73205031 original size:42 final size:43
Alignment explanation
Indices: 73204935--73205033 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 43
73204925 TATGAACTCG
* * * *
73204935 GACCACTCAACAAGCTCGGATGCTCAAATCCATAATGAACTCA
1 GACCACTCAACGAGCTCGGATACTCAAATCCATAACGAACCCA
* * *
73204978 GACCTCTCAACGAGCTCGGATACT-ACATACC-TCACGAACCCA
1 GACCACTCAACGAGCTCGGATACTCAAAT-CCATAACGAACCCA
73205020 GACCACTCAACGAG
1 GACCACTCAACGAG
73205034 TTCAGTCTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 24 0.51
43 23 0.49
ACGTcount: A:0.34, C:0.34, G:0.15, T:0.16
Consensus pattern (43 bp):
GACCACTCAACGAGCTCGGATACTCAAATCCATAACGAACCCA
Found at i:73206144 original size:7 final size:7
Alignment explanation
Indices: 73206132--73206156 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73206122 AAATAAATAG
73206132 AAATATT
1 AAATATT
73206139 AAATATT
1 AAATATT
73206146 AAATATT
1 AAATATT
73206153 AAAT
1 AAAT
73206157 TAAGAGATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATATT
Found at i:73208841 original size:20 final size:21
Alignment explanation
Indices: 73208798--73208844 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
73208788 AGCTAGATCA
*
73208798 AGCTGAATTCTAGCTCAAACG
1 AGCTGAATTCGAGCTCAAACG
**
73208819 AGCTGAA-TCGAGCTCAAGTG
1 AGCTGAATTCGAGCTCAAACG
73208839 AGCTGA
1 AGCTGA
73208845 TGGGAGCTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (21 bp):
AGCTGAATTCGAGCTCAAACG
Found at i:73211153 original size:30 final size:29
Alignment explanation
Indices: 73211098--73211161 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
73211088 TTTTTCAATT
* *
73211098 TCTTTTTCACTCTCAAATTTCTTTTCGTTC
1 TCTTTTTCAATCTCAAATCTCTTTTC-TTC
*
73211128 TCTTTTTCAATCTC-AATCTCATTTTCTTT
1 TCTTTTTCAATCTCAAATCTC-TTTTCTTC
73211157 TCTTT
1 TCTTT
73211162 GTTTCTTCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (29 bp):
TCTTTTTCAATCTCAAATCTCTTTTCTTC
Found at i:73212399 original size:2 final size:2
Alignment explanation
Indices: 73212392--73212422 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
73212382 GAGACTAGTC
73212392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73212423 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73213655 original size:67 final size:63
Alignment explanation
Indices: 73213509--73213655 Score: 154
Period size: 67 Copynumber: 2.3 Consensus size: 63
73213499 ATATAGTTCG
* * * *
73213509 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTTAGAACCACCCATGCGACCTAGCCAGTATATCCCGTA
** * *
73213572 GCTCTCTTGT-CTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACA-TATATCC
1 GCTCTCTTGTAC-ACATGGTG---AACACTTAGAACCACCCATGCGACCTAGC--CAGTATATCC
73213635 CGTA
60 CGTA
73213639 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
73213656 ATGTGCACCA
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.26
66 23 0.33
67 24 0.35
68 3 0.04
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.31
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTTAGAACCACCCATGCGACCTAGCCAGTATATCCCGTA
Found at i:73215594 original size:19 final size:19
Alignment explanation
Indices: 73215570--73215614 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
73215560 GATCACACAC
*
73215570 TTTTTTTTAATTTTGTATA
1 TTTTTTTTAATTTCGTATA
73215589 TTTTTTTTAATTTCGTATA
1 TTTTTTTTAATTTCGTATA
73215608 TTTTTTT
1 TTTTTTT
73215615 CTTTTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (19 bp):
TTTTTTTTAATTTCGTATA
Found at i:73217132 original size:20 final size:21
Alignment explanation
Indices: 73217089--73217135 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
73217079 AGCTAGATCA
*
73217089 AGCTGAATTCTAGCTCAAACG
1 AGCTGAATTCGAGCTCAAACG
**
73217110 AGCTGAA-TCGAGCTCAAGTG
1 AGCTGAATTCGAGCTCAAACG
73217130 AGCTGA
1 AGCTGA
73217136 TGGGAGCTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (21 bp):
AGCTGAATTCGAGCTCAAACG
Found at i:73220794 original size:13 final size:13
Alignment explanation
Indices: 73220776--73220807 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
73220766 GTCACATACT
73220776 CGTGTGGGCAGGC
1 CGTGTGGGCAGGC
73220789 CGTGTGGGCAGGC
1 CGTGTGGGCAGGC
*
73220802 CATGTG
1 CGTGTG
73220808 ATCACACACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.09, C:0.22, G:0.50, T:0.19
Consensus pattern (13 bp):
CGTGTGGGCAGGC
Found at i:73222050 original size:42 final size:43
Alignment explanation
Indices: 73221940--73222052 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
73221930 GTCATATCCT
* * ** * *
73221940 AGATTTGGTCTTACATGGGATCTCATATCGATGCCAATAGCCT
1 AGATATGGTCTTACACGAAATCTCATAACGATGCCAATAGCCC
* *
73221983 AGCTATGGTCTTACACGAAATCTCATAACGATGCC-ATATCCC
1 AGATATGGTCTTACACGAAATCTCATAACGATGCCAATAGCCC
*
73222025 AGATATGGTTTTACACGTAAA-CTCATAA
1 AGATATGGTCTTACACG-AAATCTCATAA
73222053 TCATAATGTC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (43 bp):
AGATATGGTCTTACACGAAATCTCATAACGATGCCAATAGCCC
Found at i:73229068 original size:16 final size:16
Alignment explanation
Indices: 73229047--73229083 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
73229037 AATTGACCTT
73229047 CACATGAAGTTTTGTG
1 CACATGAAGTTTTGTG
73229063 CACATGAAGTTTTGTG
1 CACATGAAGTTTTGTG
73229079 CACAT
1 CACAT
73229084 TTGTCACGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (16 bp):
CACATGAAGTTTTGTG
Found at i:73229678 original size:23 final size:23
Alignment explanation
Indices: 73229637--73229682 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
73229627 AGGTATAGTA
*
73229637 AAATCAAATTTCTTTTTTTTTTT
1 AAATCAAATTTCTTATTTTTTTT
73229660 AAATCTAAATTT-TTATTTTTTTT
1 AAATC-AAATTTCTTATTTTTTTT
73229683 GCTTTCCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
AAATCAAATTTCTTATTTTTTTT
Found at i:73229717 original size:6 final size:6
Alignment explanation
Indices: 73229706--73229730 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
73229696 GTTTCTTTCC
73229706 CCCTCA CCCTCA CCCTCA CCCTCA C
1 CCCTCA CCCTCA CCCTCA CCCTCA C
73229731 GCTCGCTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16
Consensus pattern (6 bp):
CCCTCA
Done.