Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 246 of 328
Found at i:73234841 original size:2 final size:2
Alignment explanation
Indices: 73234819--73234859 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
73234809 AAGAACTATT
73234819 TA TA T- TA TA T- TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73234858 TA
1 TA
73234860 GATAAACTGC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:73235625 original size:3 final size:3
Alignment explanation
Indices: 73235617--73235642 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
73235607 TTTTAAATTG
73235617 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
73235643 TAAGGGGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:73235971 original size:5 final size:5
Alignment explanation
Indices: 73235961--73235990 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
73235951 ATATTAATGT
73235961 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
73235991 ATTTATCCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:73243625 original size:2 final size:2
Alignment explanation
Indices: 73243609--73243654 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
73243599 GTAAACACCA
*
73243609 AT AT AA AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73243650 AT AT A
1 AT AT A
73243655 AAATCAGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:73247518 original size:31 final size:31
Alignment explanation
Indices: 73247459--73247518 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
73247449 ATGTAGGCCC
* *
73247459 ATACGGGCAAGCCACACGGGTATGTGGGCTT
1 ATACGGGCAAGCCACACGGGCATATGGGCTT
* *
73247490 ATACGGGCAAGCTACATGGGCATATGGGC
1 ATACGGGCAAGCCACACGGGCATATGGGC
73247519 CCAAAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.25, C:0.22, G:0.35, T:0.18
Consensus pattern (31 bp):
ATACGGGCAAGCCACACGGGCATATGGGCTT
Found at i:73251529 original size:11 final size:11
Alignment explanation
Indices: 73251513--73251537 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73251503 GATTTTACTT
73251513 GACGAGATTTC
1 GACGAGATTTC
73251524 GACGAGATTTC
1 GACGAGATTTC
73251535 GAC
1 GAC
73251538 ACGGTTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (11 bp):
GACGAGATTTC
Found at i:73255790 original size:39 final size:39
Alignment explanation
Indices: 73255736--73255813 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
73255726 AAATGAAGAA
*
73255736 AATTTTTAAAATTTTGACTAATGGAGCCAATAACGTGCC
1 AATTTTTAAAATTTTGACTAATGGAGCCAATAACATGCC
73255775 AATTTTTAAAATTTTGACTAATGGAGCCAATAACATGCC
1 AATTTTTAAAATTTTGACTAATGGAGCCAATAACATGCC
73255814 CATGAATTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.33
Consensus pattern (39 bp):
AATTTTTAAAATTTTGACTAATGGAGCCAATAACATGCC
Found at i:73258945 original size:20 final size:19
Alignment explanation
Indices: 73258922--73258960 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
73258912 GGGATGTGTG
73258922 ATGAATGGAA-CATGTGCTAA
1 ATGAAT-GAATCATG-GCTAA
73258942 ATGAATGAATCATGGCTAA
1 ATGAATGAATCATGGCTAA
73258961 TAAGTACGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (19 bp):
ATGAATGAATCATGGCTAA
Found at i:73259576 original size:18 final size:18
Alignment explanation
Indices: 73259553--73259594 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
73259543 CGGGCTGAGG
73259553 ACACGGGCGTGTGTAGCC
1 ACACGGGCGTGTGTAGCC
73259571 ACACGGGCGTGTGTAGCC
1 ACACGGGCGTGTGTAGCC
73259589 ACACGG
1 ACACGG
73259595 CCTACCCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.29, G:0.38, T:0.14
Consensus pattern (18 bp):
ACACGGGCGTGTGTAGCC
Found at i:73260709 original size:8 final size:9
Alignment explanation
Indices: 73260688--73260712 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
73260678 TGCTAGCTAT
73260688 TTTTTAATA
1 TTTTTAATA
73260697 TTTTTAATA
1 TTTTTAATA
73260706 TTTTTAA
1 TTTTTAA
73260713 AGTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTTAATA
Found at i:73263599 original size:22 final size:24
Alignment explanation
Indices: 73263568--73263620 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
73263558 AAATTTACGG
73263568 TTATTATTTT-T-TACCTTGTTGA
1 TTATTATTTTATGTACCTTGTTGA
* *
73263590 TTATTTTTTTTATGTACGTTGTTGA
1 TTA-TTATTTTATGTACCTTGTTGA
73263615 TTATTA
1 TTATTA
73263621 GATTTAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 3 0.12
23 6 0.24
24 3 0.12
25 13 0.52
ACGTcount: A:0.19, C:0.06, G:0.11, T:0.64
Consensus pattern (24 bp):
TTATTATTTTATGTACCTTGTTGA
Found at i:73265441 original size:42 final size:42
Alignment explanation
Indices: 73265365--73265518 Score: 204
Period size: 42 Copynumber: 3.7 Consensus size: 42
73265355 ACTAAGATTA
*
73265365 CGTGTAAGACCATATCT-GGATATGGCATCAATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
*
73265406 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGGCTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
* * * * *
73265448 CGTGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGA-TCC
1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACT-T
*
73265491 CATGTAAGACCATATCTGGGATATGGCA
1 CGTGTAAGACCATATCTGGGATATGGCA
73265519 ATGGTATGGT
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
41 17 0.17
42 48 0.49
43 33 0.34
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTT
Found at i:73265506 original size:85 final size:83
Alignment explanation
Indices: 73265365--73265518 Score: 220
Period size: 85 Copynumber: 1.8 Consensus size: 83
73265355 ACTAAGATTA
* * * *
73265365 CGTGTAAGACCATATCTGGATATGGCATCAATATGAGACTTCGTGTAAGACCATATCTGGGATAT
1 CGTGTAAGACCATAGCTGGATATGGCATCAATACGAGACTCCATGTAAGACCATATCTGGGATAT
73265430 GGCATCGATATGAGGCTT
66 GGCATCGATATGAGGCTT
* *
73265448 CGTGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGA-TCCCATGTAAGACCATATCTGGGA
1 CGTGTAAGACCATAGCT-GGATA-TGGCATCAATACGAGACT-CCATGTAAGACCATATCTGGGA
73265512 TATGGCA
63 TATGGCA
73265519 ATGGTATGGT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
83 16 0.26
84 5 0.08
85 41 0.66
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (83 bp):
CGTGTAAGACCATAGCTGGATATGGCATCAATACGAGACTCCATGTAAGACCATATCTGGGATAT
GGCATCGATATGAGGCTT
Found at i:73265727 original size:16 final size:16
Alignment explanation
Indices: 73265692--73265721 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73265682 ATGATCCCTC
73265692 AGTAAGGTTATGATTG
1 AGTAAGGTTATGATTG
73265708 AGTAA-GTTATGATT
1 AGTAAGGTTATGATT
73265722 ATAGTATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
AGTAAGGTTATGATTG
Found at i:73270278 original size:27 final size:29
Alignment explanation
Indices: 73270247--73270306 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
73270237 GTGAGCATGA
73270247 ATAT-AAGGTGATTT-GGCCTAAAGGGAC
1 ATATAAAGGTGATTTGGGCCTAAAGGGAC
* *
73270274 ATATAAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAAGGTGATTTGGGCCTAAAGGGAC
73270303 ATAT
1 ATAT
73270307 GAATATGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 4 0.14
28 10 0.34
29 15 0.52
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAAAGGGAC
Found at i:73270305 original size:29 final size:29
Alignment explanation
Indices: 73270261--73270391 Score: 115
Period size: 28 Copynumber: 4.6 Consensus size: 29
73270251 AAGGTGATTT
* * * *
73270261 GGCCTAAAGGGACATATAAAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGAATTG
* *
73270290 GGCCTAATGGGCCATATGAATATGAAATTG
1 GGCCTAATGGGCCATATAAATGTG-AATTG
* * * *
73270320 GGCCTGATGGGCCATATGAATATGAATCG
1 GGCCTAATGGGCCATATAAATGTGAATTG
* *
73270349 GG-CTGATGGGCCATATAAATGAG-ATTG
1 GGCCTAATGGGCCATATAAATGTGAATTG
73270376 GGCC-AAGTGGGCCATA
1 GGCCTAA-TGGGCCATA
73270392 CGTATGTATG
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
27 6 0.07
28 28 0.33
29 25 0.29
30 27 0.31
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGAATTG
Found at i:73270323 original size:30 final size:30
Alignment explanation
Indices: 73270287--73270391 Score: 130
Period size: 30 Copynumber: 3.6 Consensus size: 30
73270277 TAAAGGTGAT
73270287 TTGGGCCTAATGGGCCATATGAATATGAAA
1 TTGGGCCTAATGGGCCATATGAATATGAAA
*
73270317 TTGGGCCTGATGGGCCATATGAATATG-AA
1 TTGGGCCTAATGGGCCATATGAATATGAAA
* * *
73270346 TCGGG-CTGATGGGCCATAT-AA-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATATGAAA
73270373 TTGGGCC-AAGTGGGCCATA
1 TTGGGCCTAA-TGGGCCATA
73270392 CGTATGTATG
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 3 0.04
27 8 0.12
28 24 0.36
29 6 0.09
30 26 0.39
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (30 bp):
TTGGGCCTAATGGGCCATATGAATATGAAA
Found at i:73274527 original size:16 final size:16
Alignment explanation
Indices: 73274506--73274548 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
73274496 GTAGATCGGC
*
73274506 AAAAGCTGAAATGTCG
1 AAAAGCTGAAATATCG
73274522 AAAAGCTGAAATATCG
1 AAAAGCTGAAATATCG
*
73274538 AAAAGCCGAAA
1 AAAAGCTGAAA
73274549 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATATCG
Found at i:73274804 original size:28 final size:29
Alignment explanation
Indices: 73274764--73274819 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
73274754 GCATGAATGT
73274764 AAGGTGATTTGGGCC-AACGGGCCATATA
1 AAGGTGATTTGGGCCTAACGGGCCATATA
*
73274792 AAGGTGATTTGGGCCTAATGGGCCATAT
1 AAGGTGATTTGGGCCTAACGGGCCATAT
73274820 GAATATGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
AAGGTGATTTGGGCCTAACGGGCCATATA
Found at i:73278208 original size:29 final size:27
Alignment explanation
Indices: 73278174--73278276 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
73278164 TACTCAATCA
*
73278174 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
73278203 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
73278232 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
73278261 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
73278277 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:73286005 original size:29 final size:27
Alignment explanation
Indices: 73285971--73286073 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
73285961 TACTCAATCA
*
73285971 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
73286000 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
73286029 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
73286058 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
73286074 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:73290886 original size:42 final size:42
Alignment explanation
Indices: 73290827--73290923 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
73290817 ACTAAGATTA
* *
73290827 CGTGTAAGACCATATCTGGGTTATGGCATCAAGATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGAATCAAGATGAGACTT
* * *
73290869 CGTGTAAGACCATATCTGGGATATGGAATCGATATGAGGCTT
1 CGTGTAAGACCATATCTGGGATATGGAATCAAGATGAGACTT
*
73290911 CGT-TAAAACCATA
1 CGTGTAAGACCATA
73290924 GCTAGGCTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
41 9 0.18
42 40 0.82
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGAATCAAGATGAGACTT
Found at i:73291180 original size:15 final size:16
Alignment explanation
Indices: 73291154--73291183 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73291144 ATGAACCTTC
73291154 AGTAAGGTTATGATTG
1 AGTAAGGTTATGATTG
73291170 AGTAA-GTTATGATT
1 AGTAAGGTTATGATT
73291184 ATAAGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
AGTAAGGTTATGATTG
Found at i:73292701 original size:44 final size:42
Alignment explanation
Indices: 73292627--73292726 Score: 114
Period size: 45 Copynumber: 2.4 Consensus size: 42
73292617 TCTCTAATTA
* **
73292627 ATTTAAATTAAATAAGAGATAAATAATAAATTTTTATATTATCAT
1 ATTTAAATTAATTAAGAGATAAATAATAAATGATTAT-TT-T-AT
* *
73292672 ATTTAAATTAATTAAGTGAT-AATATTAAATGATTATTTTAT
1 ATTTAAATTAATTAAGAGATAAATAATAAATGATTATTTTAT
73292713 ATTT-AATTAATTAA
1 ATTTAAATTAATTAA
73292727 AGTAATATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
40 10 0.20
41 6 0.12
42 1 0.02
43 2 0.04
44 13 0.26
45 18 0.36
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.46
Consensus pattern (42 bp):
ATTTAAATTAATTAAGAGATAAATAATAAATGATTATTTTAT
Found at i:73294168 original size:28 final size:28
Alignment explanation
Indices: 73294136--73294216 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 28
73294126 CATCCATAGA
73294136 GTAAGTCTGTCAAGACAGTAAACACGAG
1 GTAAGTCTGTCAAGACAGTAAACACGAG
* *
73294164 GTAAGTCT-ACCAGAGCAGTAAACACG-G
1 GTAAGTCTGTCAAGA-CAGTAAACACGAG
* * *
73294191 G-AAGTCCGTCGAGATAGTAAACACGA
1 GTAAGTCTGTCAAGACAGTAAACACGA
73294217 TATGTAATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
26 15 0.34
27 10 0.23
28 19 0.43
ACGTcount: A:0.38, C:0.20, G:0.26, T:0.16
Consensus pattern (28 bp):
GTAAGTCTGTCAAGACAGTAAACACGAG
Found at i:73295564 original size:46 final size:46
Alignment explanation
Indices: 73295511--73295686 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
73295501 TATTTGGGCA
73295511 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
73295557 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
73295604 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
73295650 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73295687 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:73295666 original size:93 final size:93
Alignment explanation
Indices: 73295507--73295678 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73295497 GGGATATTTG
* *
73295507 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73295572 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
73295600 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73295665 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73295679 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73298672 original size:15 final size:15
Alignment explanation
Indices: 73298633--73298711 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
73298623 GTATCTTGGG
*
73298633 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
73298648 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
73298663 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
73298677 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
73298692 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
73298706 TTTCTT
1 TTTCTT
73298712 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73298696 original size:29 final size:29
Alignment explanation
Indices: 73298624--73298710 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
73298614 CATAGTATCG
* * * *
73298624 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
73298654 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
73298683 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
73298711 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:73301136 original size:46 final size:46
Alignment explanation
Indices: 73301083--73301258 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
73301073 TATTTGGGCA
73301083 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
73301129 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
73301176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
73301222 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73301259 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.59
47 33 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:73301238 original size:93 final size:93
Alignment explanation
Indices: 73301079--73301250 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73301069 GGGATATTTG
* * *
73301079 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
73301144 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
73301172 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
73301237 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73301251 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73310188 original size:26 final size:26
Alignment explanation
Indices: 73310159--73310212 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
73310149 TCCTTCCTTT
73310159 TTCTCCTCTTCAATTCAATTTAATCA
1 TTCTCCTCTTCAATTCAATTTAATCA
73310185 TTCTCCTCTTCAATTCAATTTAATCA
1 TTCTCCTCTTCAATTCAATTTAATCA
73310211 TT
1 TT
73310213 TATACTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (26 bp):
TTCTCCTCTTCAATTCAATTTAATCA
Found at i:73310225 original size:26 final size:26
Alignment explanation
Indices: 73310164--73310218 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
73310154 CCTTTTTCTC
* *
73310164 CTCTTCAATTCAATTTAATCATTCTC
1 CTCTTCAATTCAATTTAATCATTATA
73310190 CTCTTCAATTCAATTTAATCATTTATA
1 CTCTTCAATTCAATTTAATCA-TTATA
73310217 CT
1 CT
73310219 TTTAATTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (26 bp):
CTCTTCAATTCAATTTAATCATTATA
Found at i:73323417 original size:29 final size:29
Alignment explanation
Indices: 73323355--73323457 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
73323345 GTGACGAGAT
* * *
73323355 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
73323384 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
73323413 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
73323442 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73323458 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:73328574 original size:16 final size:16
Alignment explanation
Indices: 73328548--73328597 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 16
73328538 ATAGATACAA
73328548 TATTTTT-ATTTCTTT
1 TATTTTTAATTTCTTT
73328563 TATTTTTAA-TT-TTT
1 TATTTTTAATTTCTTT
73328577 TATTTGTTTAATTTCATTT
1 TA-TT-TTTAATTTC-TTT
73328596 TA
1 TA
73328598 ACTTTTAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 5 0.17
15 11 0.38
16 6 0.21
17 2 0.07
19 5 0.17
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (16 bp):
TATTTTTAATTTCTTT
Found at i:73334905 original size:2 final size:2
Alignment explanation
Indices: 73334898--73334922 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73334888 TACTTAATAC
73334898 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
73334923 AATGATTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73335996 original size:2 final size:2
Alignment explanation
Indices: 73335989--73336017 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
73335979 AATCTATTGG
73335989 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73336018 AGTAAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73336872 original size:42 final size:42
Alignment explanation
Indices: 73336816--73336927 Score: 120
Period size: 44 Copynumber: 2.6 Consensus size: 42
73336806 AACGCCACTA
* *
73336816 TCCCAGACAGGGTCTTACATGAAATCAGATA-CGATGCCAATG
1 TCCCAGACATGGTCTTACATGAAATCAGA-AGCGATGCCAACG
* * *
73336858 TCCCAGACATGGTCTTACACAT-AAAACATAAGTCGCTGCCAACG
1 TCCCAGACATGGTCTT--ACATGAAATCAGAAG-CGATGCCAACG
*
73336902 TCCCAGACGTGGTCTTACATGAAATC
1 TCCCAGACATGGTCTTACATGAAATC
73336928 CTATGACATG
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
42 20 0.34
43 10 0.17
44 28 0.48
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACATGAAATCAGAAGCGATGCCAACG
Found at i:73337216 original size:20 final size:20
Alignment explanation
Indices: 73337193--73337232 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
73337183 TTATTTATCA
*
73337193 AAATAAATTCAAATTTAACT
1 AAATAAATTAAAATTTAACT
73337213 AAATAAATTAAAATTTAACT
1 AAATAAATTAAAATTTAACT
73337233 TATTCAGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (20 bp):
AAATAAATTAAAATTTAACT
Found at i:73346269 original size:75 final size:75
Alignment explanation
Indices: 73346170--73346337 Score: 212
Period size: 75 Copynumber: 2.2 Consensus size: 75
73346160 ACTTTGCATT
* ** **
73346170 GAAGGTAACACCATGAATTCATTACAGAGTCATGTTTCATATA-TAGTGTTCTGCCAATTAAATA
1 GAAGGCAACACCATGAATTCATTACAGAAACATGTTTCATATACTACAG-TCTGCCAATTAAATA
73346234 GATATTCCATC
65 GATATTCCATC
* * * * * * *
73346245 GAAGGCAACATCATGAATTTATTACATAAACATGTTTCATGTACTACAGTCTGTCAGTTCAATAG
1 GAAGGCAACACCATGAATTCATTACAGAAACATGTTTCATATACTACAGTCTGCCAATTAAATAG
73346310 ATATTCCATC
66 ATATTCCATC
73346320 GAAGGCAACACCATGAAT
1 GAAGGCAACACCATGAAT
73346338 CCTTTTCTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
75 76 0.96
76 3 0.04
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (75 bp):
GAAGGCAACACCATGAATTCATTACAGAAACATGTTTCATATACTACAGTCTGCCAATTAAATAG
ATATTCCATC
Found at i:73353965 original size:47 final size:47
Alignment explanation
Indices: 73353911--73354187 Score: 374
Period size: 47 Copynumber: 5.8 Consensus size: 47
73353901 TTTAAGATTT
73353911 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
73353958 GATGTGATGAATGTGAAAGTGTCTATATATATGTGATAAAGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCC
*
73354009 GATCTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* * *
73354058 GATGTGATGAATGTGAAGGTGTATATATGTGACAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * * *
73354105 AATGTGATGAATGTGAAAGTGTATATATATGATAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
73354152 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73354188 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 117 0.56
49 46 0.22
51 45 0.22
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:73354062 original size:147 final size:141
Alignment explanation
Indices: 73353911--73354187 Score: 394
Period size: 147 Copynumber: 1.9 Consensus size: 141
73353901 TTTAAGATTT
* * *
73353911 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
73353976 GTGTCTATATATATGTGATAAAGCCTAATGGCCGATC-TGATGAATGTGAAAGTGTATATATATG
66 GTG--TATATATA--TGATAAAGCCGAATGGCC-AACGTGATGAATGTGAAAGTGTATA-A-ATG
73354040 TGATAAGGCCTAATGGCC
124 TGATAAGGCCTAATGGCC
*
73354058 GATGTGATGAATGTGAAGGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
** * *
73354123 GTGTATATATATGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGTATATATATGATAAAGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
73354188 TCCCGAAGGG
Statistics
Matches: 119, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
141 10 0.08
142 3 0.03
143 34 0.29
145 8 0.07
147 64 0.54
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAA
GTGTATATATATGATAAAGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
GCCTAATGGCC
Found at i:73356753 original size:40 final size:40
Alignment explanation
Indices: 73356698--73357014 Score: 440
Period size: 40 Copynumber: 7.9 Consensus size: 40
73356688 CTCGACGACG
*
73356698 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
73356738 ATCCGGGCTAAGTCCCGTAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
73356778 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
73356818 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
73356858 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
73356898 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
** ** * *
73356938 ATCCATGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTG--ATGT
* * *
73356980 -T-CGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
73357015 CGTGTATTCG
Statistics
Matches: 253, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.00
40 248 0.98
41 1 0.00
42 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:73360500 original size:47 final size:47
Alignment explanation
Indices: 73360446--73360724 Score: 360
Period size: 47 Copynumber: 5.8 Consensus size: 47
73360436 TTTAAGATTT
73360446 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
73360493 GATGTGATGAATGTGAAAGTGTATATATATATATGTGATAAAGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG------TATATATGTGATAAGGCCTAATGGCC
73360546 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* * * *
73360595 GATGTGATGAATGTGAAGGTGTATATATGTTACAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * * *
73360642 AATGTGATGAATGTGAAAGTGTATATATATGATAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
73360689 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73360725 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
47 115 0.55
49 47 0.23
53 46 0.22
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:73366886 original size:75 final size:74
Alignment explanation
Indices: 73366756--73366945 Score: 220
Period size: 75 Copynumber: 2.5 Consensus size: 74
73366746 ATAACCATTA
* * * **
73366756 TTCATGTACCACGATTTGCCAGTTCAATGCACT-TTGCATCGAATGAAACGTCATGAATTCATTA
1 TTCATGTACCACGATCTGCCAGTTCAATG-A-TATTCCATCGAAGGAAACACCATGAATTCATTA
73366820 TAGAGTCATGT
64 TAGAGTCATGT
* * * *
73366831 TTTATGTACCACAATCTGCCAGTTCAATAGATATTTCATCGAAGGCAACACCATGAATTCATTAT
1 TTCATGTACCACGATCTGCCAGTTCAAT-GATATTCCATCGAAGGAAACACCATGAATTCATTAT
73366896 AGAGTCATGT
65 AGAGTCATGT
* * * *
73366906 TTCATATGCCTCGATCTGCCAATTCAATGGATATTCCATC
1 TTCATGTACCACGATCTGCCAGTTCAAT-GATATTCCATC
73366946 AAAAATAGTG
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
74 1 0.01
75 95 0.98
76 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (74 bp):
TTCATGTACCACGATCTGCCAGTTCAATGATATTCCATCGAAGGAAACACCATGAATTCATTATA
GAGTCATGT
Found at i:73370281 original size:20 final size:20
Alignment explanation
Indices: 73370256--73370293 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
73370246 ACTCGGAAGT
73370256 AGACTTGTGATCTTCAATCG
1 AGACTTGTGATCTTCAATCG
73370276 AGACTTGTGATCTTCAAT
1 AGACTTGTGATCTTCAAT
73370294 TGAACTGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (20 bp):
AGACTTGTGATCTTCAATCG
Found at i:73374848 original size:18 final size:20
Alignment explanation
Indices: 73374825--73374863 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
73374815 AAGGGAGAAT
73374825 AAAG-AAATG-GAAAAAAAA
1 AAAGAAAATGAGAAAAAAAA
73374843 AAAGAAAATGATGAAAAAAAA
1 AAAGAAAATGA-GAAAAAAAA
73374864 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
21 9 0.50
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (20 bp):
AAAGAAAATGAGAAAAAAAA
Found at i:73376209 original size:29 final size:29
Alignment explanation
Indices: 73376177--73376279 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
73376167 GTGACGAGAT
* *
73376177 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
73376206 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
73376235 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
73376264 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73376280 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:73378049 original size:20 final size:19
Alignment explanation
Indices: 73378008--73378051 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
73377998 ATATATCTAA
* * *
73378008 ATTACAAATAAAATTAATT
1 ATTATAAATAAAAATAAAT
73378027 ATTATAAATAAAAATAGAAT
1 ATTATAAATAAAAATA-AAT
73378047 ATTAT
1 ATTAT
73378052 TTAAACTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
ATTATAAATAAAAATAAAT
Found at i:73379228 original size:25 final size:25
Alignment explanation
Indices: 73379200--73379250 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
73379190 AATCAAGATA
**
73379200 AATTAATCTACTTTAGTATCTAGCT
1 AATTAATCTACTTTACCATCTAGCT
73379225 AATTAATCTACTTTACCATCTAGCT
1 AATTAATCTACTTTACCATCTAGCT
73379250 A
1 A
73379251 GCAGGGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (25 bp):
AATTAATCTACTTTACCATCTAGCT
Found at i:73385002 original size:22 final size:22
Alignment explanation
Indices: 73384976--73385051 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
73384966 ATCCACGTTC
73384976 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
73384998 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
73385023 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
73385045 ATCACAT
1 ATCACAT
73385052 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:73385287 original size:24 final size:24
Alignment explanation
Indices: 73385213--73385287 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
73385203 TCACATTCAT
73385213 CACATTTGCCATTCGGCCTTAGCA
1 CACATTTGCCATTCGGCCTTAGCA
** * *
73385237 CACAAATG-CATGTTC-ACATT--CA
1 CACATTTGCCA--TTCGGCCTTAGCA
73385259 TCACATTTGCCATTCGGCCTTAGCA
1 -CACATTTGCCATTCGGCCTTAGCA
73385284 CACA
1 CACA
73385288 AATGCATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
CACATTTGCCATTCGGCCTTAGCA
Found at i:73385313 original size:47 final size:47
Alignment explanation
Indices: 73384973--73385312 Score: 509
Period size: 47 Copynumber: 7.2 Consensus size: 47
73384963 CACATCCACG
* *
73384973 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
73385020 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
73385067 TTCTTCACATTGGCCATTCGGCCTTATCACATATATACTTGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
73385114 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
73385161 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
73385208 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
73385255 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
73385302 TTCATCACATT
1 TTCATCACATT
73385313 TAATCCTAAA
Statistics
Matches: 275, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 275 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:73388896 original size:42 final size:42
Alignment explanation
Indices: 73388721--73389007 Score: 419
Period size: 40 Copynumber: 7.0 Consensus size: 42
73388711 CCGAATACAC
* * * * *
73388721 ATCACCAGTATGATTGCTCTTCGAGACCTAGCCCGG--ATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
*
73388761 AACACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--ATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
*
73388801 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGG--ATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
*
73388841 AACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
* *
73388883 ATCACTAGCACGAATGCTCTTTGGGACTTAGCCCGGCTATA-
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
73388924 A-CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
*
73388965 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
73389007 A
1 A
73389008 ACTCTCAATT
Statistics
Matches: 227, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
40 143 0.63
41 2 0.01
42 82 0.36
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (42 bp):
ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
Found at i:73388933 original size:82 final size:82
Alignment explanation
Indices: 73388735--73389005 Score: 483
Period size: 82 Copynumber: 3.3 Consensus size: 82
73388725 CCAGTATGAT
* *
73388735 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--A
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
73388798 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
73388815 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
73388880 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
* *
73388897 TGCTCTTTGGGACTTAGCCCGGCTATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
73388962 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
*
73388979 TGCTCTTCGGGACTTAGCCCGGCTATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
73389006 TAACTCTCAA
Statistics
Matches: 184, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
80 60 0.33
82 124 0.67
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (82 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
TATATCACTAGCACGAA
Found at i:73390442 original size:46 final size:46
Alignment explanation
Indices: 73390374--73390464 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
73390364 TATATATACA
** * *
73390374 CATCTCATACATGTCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
73390420 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
73390465 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:73390507 original size:22 final size:22
Alignment explanation
Indices: 73390481--73390556 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
73390471 ATCCACGTTC
73390481 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
73390503 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
73390528 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
73390550 ATCACAT
1 ATCACAT
73390557 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:73390768 original size:23 final size:23
Alignment explanation
Indices: 73390695--73390768 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
73390685 GGTCTTATCA
73390695 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
73390718 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
73390742 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
73390765 CACA
1 CACA
73390769 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:73390792 original size:24 final size:24
Alignment explanation
Indices: 73390718--73390792 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
73390708 TCACATTCAT
73390718 CACATTTGCCATTCGGCCTTAGCA
1 CACATTTGCCATTCGGCCTTAGCA
** * *
73390742 CACAAATG-CATGTTC-ACATT--CA
1 CACATTTGCCA--TTCGGCCTTAGCA
73390764 TCACATTTGCCATTCGGCCTTAGCA
1 -CACATTTGCCATTCGGCCTTAGCA
73390789 CACA
1 CACA
73390793 AATGCATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.31
24 15 0.42
25 5 0.14
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (24 bp):
CACATTTGCCATTCGGCCTTAGCA
Found at i:73390818 original size:47 final size:47
Alignment explanation
Indices: 73390478--73390817 Score: 491
Period size: 47 Copynumber: 7.2 Consensus size: 47
73390468 CACATCCACG
* *
73390478 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
73390525 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
73390572 TTCTTCACATTGGCCATTCGGCCTTATCACATATATACTTGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
73390619 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
73390666 TTCATCACATTGGCTATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
73390713 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * *
73390760 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACG
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
73390807 TTCATCACATT
1 TTCATCACATT
73390818 TAATCCTAAA
Statistics
Matches: 272, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 272 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:73393112 original size:40 final size:40
Alignment explanation
Indices: 73393030--73393246 Score: 228
Period size: 40 Copynumber: 5.5 Consensus size: 40
73393020 AAGCCAAGTA
* * * *
73393030 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGC-TCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACCAATG
*
73393068 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
* * *
73393108 CCTTCGGGACTTAGCCCTGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
* *
73393148 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCA-CAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAA-TG
* * * * * *
73393188 CCTTCGGGACTTAGCCTGGA-ACTACTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACCAATG
73393228 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73393247 TTATCATCCG
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 120 0.79
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
Found at i:73401246 original size:39 final size:39
Alignment explanation
Indices: 73401191--73401390 Score: 255
Period size: 40 Copynumber: 5.1 Consensus size: 39
73401181 TGGGATTTAA
* *
73401191 CCGGATATAGCT-ACTCGCTCAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAATGCCTTCGGGACTTAGC
73401230 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCA-CAATGCCTTCGGGACTTAGC
*
73401270 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGC
* * *
73401310 CCGGATGTAATAACTCACACAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
*
73401349 CCGGA-ACTAGTCACTAGCGCA-AATGCCTTC-GGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAATGCCTTCGGGACTTAGC
73401388 CCG
1 CCG
73401391 ATTGTCATCC
Statistics
Matches: 144, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 59 0.41
40 81 0.56
41 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
Found at i:73401341 original size:79 final size:79
Alignment explanation
Indices: 73401191--73401390 Score: 273
Period size: 79 Copynumber: 2.5 Consensus size: 79
73401181 TGGGATTTAA
* * * *
73401191 CCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACCAATG
73401255 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
*
73401270 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTCACA-CAATG
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACCAATG
73401334 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
* *
73401349 CCGGA-ACTAGTCACTAGCGCAAATGCCTTC-GGACTTAGCCCG
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCG
73401391 ATTGTCATCC
Statistics
Matches: 110, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
78 15 0.14
79 60 0.55
80 35 0.32
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACCAATGC
CTTCGGGACTTAGC
Found at i:73405888 original size:148 final size:148
Alignment explanation
Indices: 73405620--73405915 Score: 475
Period size: 148 Copynumber: 2.0 Consensus size: 148
73405610 TATTATCAGG
* * * *
73405620 CTTCAATTCTCACGACTGTTGTGACATGCGGAGCTTCCTTCAACCTTATCATCTGCTTCTTCAGA
1 CTTCAATTCTCACGACTATTGCGACATGCAGAGCTTCCTTCAACCTCATCATCTGCTTCTTCAGA
* *
73405685 GCAACTGAAGAAAATGATGATATGGAAAGAGTAAGAATCGTAAAAAGAATTAAGAAAATTATGTC
66 GCAACTAAAGAAAATGATGATATGGAAAGAATAAGAATCGTAAAAAGAATTAAGAAAATTATGTC
* *
73405750 TTCACACATACCTATATA
131 TTCACACACACCAATATA
* *
73405768 CTTCAATTCTCACGACTATTGCGACATGCAGAGCTTCCTTCAACCTCATCCTCTTCTTCTTCAGA
1 CTTCAATTCTCACGACTATTGCGACATGCAGAGCTTCCTTCAACCTCATCATCTGCTTCTTCAGA
* * *
73405833 GCAACTAAAGAAAATGATGTTATGGAAAGAATAAGAATCGTAAAAAGAATTAAGAAAATTTTTTC
66 GCAACTAAAGAAAATGATGATATGGAAAGAATAAGAATCGTAAAAAGAATTAAGAAAATTATGTC
73405898 TTCACACACACCAATATA
131 TTCACACACACCAATATA
73405916 TATACTCCCT
Statistics
Matches: 135, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
148 135 1.00
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.29
Consensus pattern (148 bp):
CTTCAATTCTCACGACTATTGCGACATGCAGAGCTTCCTTCAACCTCATCATCTGCTTCTTCAGA
GCAACTAAAGAAAATGATGATATGGAAAGAATAAGAATCGTAAAAAGAATTAAGAAAATTATGTC
TTCACACACACCAATATA
Found at i:73407917 original size:43 final size:44
Alignment explanation
Indices: 73407869--73408021 Score: 168
Period size: 43 Copynumber: 3.5 Consensus size: 44
73407859 TATCGAGATG
*
73407869 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* * *
73407912 TGATTACGTGTAAGACCATGTTTGTGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* * * * * * *
73407955 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCACCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* *
73407998 TGATAACATGTAAGACCATATCTG
1 TGATTACATGTAAGACCATGTCTG
73408022 AGATATGGCA
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 1 0.01
43 90 0.99
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
Found at i:73412971 original size:27 final size:25
Alignment explanation
Indices: 73412907--73412963 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 25
73412897 AATTAGTTAT
*
73412907 ATATGCCATTTTTTTAATTAGGCTA
1 ATATGCCATTTTTTTAATTAGGCAA
* *
73412932 ATAAGCCATTTTTTTTAAATTAGGGAA
1 ATATGCCA-TTTTTTT-AATTAGGCAA
73412959 ATATG
1 ATATG
73412964 TCACTTTTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 7 0.27
26 7 0.27
27 12 0.46
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (25 bp):
ATATGCCATTTTTTTAATTAGGCAA
Found at i:73415142 original size:39 final size:40
Alignment explanation
Indices: 73415094--73415221 Score: 170
Period size: 39 Copynumber: 3.2 Consensus size: 40
73415084 ATATTCGGCC
* *
73415094 TAAGTCCCGAAGGCATTCGTGCTAGTGTTATATTCGGG-T
1 TAAGTCCCGAAGGCATTTGTGCTAGTGTTATATCCGGGCT
* *
73415133 TAAGCCCCGAAGGCATTTGTGCTGGTGTTATATCCGGGCT
1 TAAGTCCCGAAGGCATTTGTGCTAGTGTTATATCCGGGCT
* * *
73415173 AAAGTCCCGCAGGC-TTTGTGCTAGTATTATATCCGGGCT
1 TAAGTCCCGAAGGCATTTGTGCTAGTGTTATATCCGGGCT
73415212 TAAAGTCCCG
1 T-AAGTCCCG
73415222 CATGCTTTGT
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 57 0.74
40 20 0.26
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGTTATATCCGGGCT
Found at i:73419174 original size:18 final size:18
Alignment explanation
Indices: 73419152--73419211 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
73419142 TGCGACTAAG
*
73419152 GAAGAAGTTGCAGGTGAA
1 GAAGAAGATGCAGGTGAA
* *
73419170 TAAGAAGATGC-GACTGAA
1 GAAGAAGATGCAG-GTGAA
*
73419188 GAAGAAGATGCAGGTGAG
1 GAAGAAGATGCAGGTGAA
73419206 GAAGAA
1 GAAGAA
73419212 AATTCAGTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 1 0.03
18 32 0.94
19 1 0.03
ACGTcount: A:0.43, C:0.07, G:0.37, T:0.13
Consensus pattern (18 bp):
GAAGAAGATGCAGGTGAA
Found at i:73419211 original size:36 final size:36
Alignment explanation
Indices: 73419130--73419211 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
73419120 AAGGCACAGA
* *
73419130 TGAGGAAGAATATGCGACTAAGGAAGAAGTTGCAGG
1 TGAGGAAGAAGATGCGACTAAGGAAGAAGATGCAGG
**
73419166 TGAATAAGAAGATGCGACTGAA-GAAGAAGATGCAGG
1 TGAGGAAGAAGATGCGACT-AAGGAAGAAGATGCAGG
73419202 TGAGGAAGAA
1 TGAGGAAGAA
73419212 AATTCAGTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 37 0.95
37 2 0.05
ACGTcount: A:0.43, C:0.07, G:0.35, T:0.15
Consensus pattern (36 bp):
TGAGGAAGAAGATGCGACTAAGGAAGAAGATGCAGG
Found at i:73421098 original size:48 final size:48
Alignment explanation
Indices: 73421026--73421446 Score: 405
Period size: 48 Copynumber: 8.8 Consensus size: 48
73421016 AAAGGGTAAG
* * *
73421026 ATGCCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATAAAA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATA
* * * *
73421074 ATGCCGATGCCATGTCCCAAACATGGTCTTACGCTGGCTCAT-ATATTT
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCATAATA
* ** * * *
73421122 AGGCCGATGCCATGTCCCAAACATATTCTTACACTAGCTTTCGTAACA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATA
* * * * * * * *
73421170 ATACCAATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATTG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATA
* * * * *
73421218 AGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATA
** * ** * *
73421266 ATATCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCAAATATTG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATA
* * * * *
73421314 AGGCCAATGACATCTCCCAAAACATGGTCTTACACTAGCTCTCATAACA
1 ATGCCGATGCCATGTCCC-AAACATGGTCTTACACTAGCTCTCATAATA
* * *
73421363 ATGCCGATGCCATGTCTCAAACATGGTCTTACACTGGCTCAT-ATATTA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCATAATA
* * *
73421411 AGGCCGATGACATGTCCCAGACATGGTCTTACACTA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTA
73421447 TGTAACATCC
Statistics
Matches: 290, Mismatches: 79, Indels: 8
0.77 0.21 0.02
Matches are distributed among these distances:
47 1 0.00
48 249 0.86
49 40 0.14
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATA
Found at i:73421192 original size:96 final size:96
Alignment explanation
Indices: 73421028--73421446 Score: 579
Period size: 96 Copynumber: 4.4 Consensus size: 96
73421018 AGGGTAAGAT
* * * *
73421028 GCCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCATAAAAATGCCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCA
* *
73421093 AACATGGTCTTACGCTGGCTCATATATTTAG
66 AACATGGTCTTACACTGGCTCATATATTGAG
* ** * * *
73421124 GCCGATGCCATGTCCCAAACATATTCTTACACTAGCTTTCGTAACAATACCAATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCA
* *
73421189 AACATGGTCTTACATTGGCTCACATATTGAG
66 AACATGGTCTTACACTGGCTCATATATTGAG
* * *
73421220 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAATATCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCA
* *
73421285 AACATGGTCTTACACTAGCTCAAATATTGAG
66 AACATGGTCTTACACTGGCTCATATATTGAG
* * * * *
73421316 GCCAATGACATCTCCCAAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATG-TCT
1 GCCGATGCCATGTCCC-AGACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTC-
*
73421380 CAAACATGGTCTTACACTGGCTCATATATTAAG
64 CAAACATGGTCTTACACTGGCTCATATATTGAG
*
73421413 GCCGATGACATGTCCCAGACATGGTCTTACACTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA
73421447 TGTAACATCC
Statistics
Matches: 285, Mismatches: 36, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
96 201 0.71
97 84 0.29
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATACCGATGCCATGTTCCA
AACATGGTCTTACACTGGCTCATATATTGAG
Found at i:73425330 original size:56 final size:55
Alignment explanation
Indices: 73425233--73425343 Score: 168
Period size: 56 Copynumber: 2.0 Consensus size: 55
73425223 AATAGTCCCC
* *
73425233 TCATTAGCTAGATTAAGCTATAAGGGTTCCAAAAGCACAAAAATCAATAAAAATGA
1 TCATTAGCTAGATTAAGCTATAAGGGTTCCAAAAACAC-AAAATCAACAAAAATGA
* * *
73425289 TCATTAGCTAGATTAAGCTATAAGGGTTTCAAAAACTCAAAATTAACAAAAATGA
1 TCATTAGCTAGATTAAGCTATAAGGGTTCCAAAAACACAAAATCAACAAAAATGA
73425344 CCATCAAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
55 15 0.30
56 35 0.70
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.25
Consensus pattern (55 bp):
TCATTAGCTAGATTAAGCTATAAGGGTTCCAAAAACACAAAATCAACAAAAATGA
Found at i:73436126 original size:39 final size:40
Alignment explanation
Indices: 73436005--73436140 Score: 152
Period size: 40 Copynumber: 3.4 Consensus size: 40
73435995 GGATATAACG
* * * *
73436005 ACTCGCTCAAATGCCTTCGGTAC-AAACCCCGG-TTATAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
73436045 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * *
73436085 ACTCGCACAAATGCCTTCGGG-CTTAACTCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
*
73436124 ACTCGCACGAACGCCTT
1 ACTCGCACGAATGCCTT
73436141 TGGATTTTAG
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 30 0.36
40 50 0.60
41 4 0.05
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:73440176 original size:71 final size:71
Alignment explanation
Indices: 73440092--73440255 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73440082 CGATTTGTCT
73440092 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73440157 CTTTCA
66 CTTTCA
73440163 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73440228 CTTTCA
66 CTTTCA
73440234 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
73440256 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:73440293 original size:71 final size:70
Alignment explanation
Indices: 73440092--73440289 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
73440082 CGATTTGTCT
* * * *
73440092 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73440157 CTTTCA
65 CTTTCA
* * * *
73440163 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73440228 CTTTCA
65 CTTTCA
* *
73440234 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
73440290 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:73447754 original size:71 final size:71
Alignment explanation
Indices: 73447668--73447831 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73447658 CGATTTGTCT
73447668 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73447733 CTTTCA
66 CTTTCA
73447739 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73447804 CTTTCA
66 CTTTCA
73447810 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
73447832 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:73447869 original size:71 final size:70
Alignment explanation
Indices: 73447668--73447865 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
73447658 CGATTTGTCT
* * * *
73447668 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73447733 CTTTCA
65 CTTTCA
* * * *
73447739 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73447804 CTTTCA
65 CTTTCA
* *
73447810 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
73447866 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:73454521 original size:39 final size:40
Alignment explanation
Indices: 73454386--73454524 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
73454376 GGATATAACG
* * *
73454386 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
73454426 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * *
73454466 ACT-GACACAAATGCCTTCGGG-CTTAACCCGGATTTATTG
1 ACTCG-CACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
*
73454505 ACTCGCACGAACGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
73454525 ATCTTAGTCC
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
39 32 0.37
40 50 0.58
41 4 0.05
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:73459488 original size:20 final size:20
Alignment explanation
Indices: 73459448--73459489 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
73459438 TATGAAAGAC
*
73459448 AAAAAAATTATTTTAATCTT
1 AAAAAAATTAATTTAATCTT
73459468 AAAAAAATTAAATTTAA-CTT
1 AAAAAAATT-AATTTAATCTT
73459488 AA
1 AA
73459490 TTGAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAAAATTAATTTAATCTT
Found at i:73459689 original size:19 final size:19
Alignment explanation
Indices: 73459655--73459693 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
73459645 TGAGAATATC
*
73459655 AAAAAATTTAGAAGAACTTG
1 AAAAAATTGAGAAGAA-TTG
73459675 AAAAAATTGAG-AGAATTG
1 AAAAAATTGAGAAGAATTG
73459693 A
1 A
73459694 GAGAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.56, C:0.03, G:0.18, T:0.23
Consensus pattern (19 bp):
AAAAAATTGAGAAGAATTG
Found at i:73461768 original size:2 final size:2
Alignment explanation
Indices: 73461761--73461797 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73461751 ATGCTAGCTT
73461761 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73461798 TAAGTGGTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73463124 original size:11 final size:10
Alignment explanation
Indices: 73463103--73463146 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
73463093 AAATATTATT
*
73463103 TTTTTTACTA
1 TTTTTTGCTA
73463113 TTTTATTGCTA
1 TTTT-TTGCTA
*
73463124 TTTTTTACT-
1 TTTTTTGCTA
73463133 TTTTTTGCTA
1 TTTTTTGCTA
73463143 TTTT
1 TTTT
73463147 ATTGTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 8 0.28
10 12 0.41
11 9 0.31
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (10 bp):
TTTTTTGCTA
Found at i:73463138 original size:30 final size:30
Alignment explanation
Indices: 73463102--73463167 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
73463092 AAAATATTAT
73463102 TTTTTTTACTATTTTATTGCTATTTTTT-AC
1 TTTTTTTACTATTTTATTG-TATTTTTTCAC
* *
73463132 TTTTTTTGCTATTTTATTGTTTTTTTTCAC
1 TTTTTTTACTATTTTATTGTATTTTTTCAC
*
73463162 TATTTT
1 TTTTTT
73463168 GCTACCATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (30 bp):
TTTTTTTACTATTTTATTGTATTTTTTCAC
Found at i:73463157 original size:19 final size:19
Alignment explanation
Indices: 73463103--73463146 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 19
73463093 AAATATTATT
73463103 TTTTTTACTATTTTATTGCTA
1 TTTTTTACT-TTTT-TTGCTA
73463124 TTTTTTACTTTTTTTGCTA
1 TTTTTTACTTTTTTTGCTA
73463143 TTTT
1 TTTT
73463147 ATTGTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 10 0.43
20 4 0.17
21 9 0.39
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTTTACTTTTTTTGCTA
Found at i:73465575 original size:17 final size:17
Alignment explanation
Indices: 73465553--73465603 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
73465543 TGTACACACG
73465553 ATATAGGTAAAAAATAA
1 ATATAGGTAAAAAATAA
* *
73465570 ATATAGGCGTAAAAATTAT
1 ATATA-G-GTAAAAAATAA
*
73465589 ATATAAG-AAAAAATA
1 ATATAGGTAAAAAATA
73465604 TATCAAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 7 0.25
17 6 0.21
18 1 0.04
19 14 0.50
ACGTcount: A:0.61, C:0.02, G:0.12, T:0.25
Consensus pattern (17 bp):
ATATAGGTAAAAAATAA
Found at i:73465699 original size:19 final size:19
Alignment explanation
Indices: 73465668--73465705 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
73465658 ATATATATCG
73465668 AAAATATATTTTTCATTAT
1 AAAATATATTTTTCATTAT
73465687 AAAATTATATTTTT-ATTAT
1 AAAA-TATATTTTTCATTAT
73465706 TCTATTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (19 bp):
AAAATATATTTTTCATTAT
Found at i:73465732 original size:21 final size:19
Alignment explanation
Indices: 73465708--73465747 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
73465698 TTTATTATTC
73465708 TATTAATATAAATAAAGAATT
1 TATTAAT-TAAA-AAAGAATT
*
73465729 TATTAATTAAAAATGAATT
1 TATTAATTAAAAAAGAATT
73465748 AAAAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
TATTAATTAAAAAAGAATT
Found at i:73467670 original size:24 final size:26
Alignment explanation
Indices: 73467609--73467675 Score: 83
Period size: 24 Copynumber: 2.8 Consensus size: 26
73467599 AATTATTGCA
73467609 AATATTTGTATATTTT--TATATGTGT
1 AATA-TTGTATATTTTAATATATGTGT
73467634 AATATT-TAT-TTTTAATATAT-TGT
1 AATATTGTATATTTTAATATATGTGT
73467657 -ATATTGTATATTTTAATAT
1 AATATTGTATATTTTAATAT
73467676 TATATATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
22 9 0.24
23 9 0.24
24 16 0.42
25 4 0.11
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (26 bp):
AATATTGTATATTTTAATATATGTGT
Found at i:73467676 original size:22 final size:22
Alignment explanation
Indices: 73467614--73467683 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
73467604 TTGCAAATAT
*
73467614 TTGTATATTTTTATATGTGTAATA
1 TTGTATATTTTAATAT-TGT-ATA
73467638 TT-TAT-TTTTAATATATTGTATA
1 TTGTATATTTT-A-ATATTGTATA
*
73467660 TTGTATATTTTAATATTATATA
1 TTGTATATTTTAATATTGTATA
73467682 TT
1 TT
73467684 TTTATATGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
22 20 0.50
23 10 0.25
24 10 0.25
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.61
Consensus pattern (22 bp):
TTGTATATTTTAATATTGTATA
Found at i:73467681 original size:15 final size:14
Alignment explanation
Indices: 73467648--73467690 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
73467638 TTTATTTTTA
*
73467648 ATATATTGTATATT
1 ATATATTTTATATT
*
73467662 GTATATTTTAATATT
1 ATATATTTT-ATATT
73467677 ATATATTTTTATAT
1 ATATA-TTTTATAT
73467691 GTGCATTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 7 0.29
15 13 0.54
16 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (14 bp):
ATATATTTTATATT
Found at i:73467986 original size:19 final size:20
Alignment explanation
Indices: 73467962--73468006 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
73467952 ATAATGATAA
73467962 ATATAATAA-TATTTT-TATT
1 ATATAATAATTATTTTAT-TT
*
73467981 ATATAATTATTATTTTATTT
1 ATATAATAATTATTTTATTT
73468001 ATATAA
1 ATATAA
73468007 ATAAAGGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 14 0.61
21 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATATAATAATTATTTTATTT
Found at i:73468089 original size:2 final size:2
Alignment explanation
Indices: 73468046--73468070 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73468036 TAACATAATG
73468046 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
73468071 ATTTTTCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73468633 original size:19 final size:19
Alignment explanation
Indices: 73468603--73468653 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
73468593 TTATAAATAA
73468603 ATAAATAAAATTCA-AGAAAT
1 ATAAA-AAAATT-AGAGAAAT
*
73468623 ATAAAAAAATTAGAGAATT
1 ATAAAAAAATTAGAGAAAT
*
73468642 ATAAAAACATTA
1 ATAAAAAAATTA
73468654 ATCAAAGGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 1 0.04
19 22 0.79
20 5 0.18
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (19 bp):
ATAAAAAAATTAGAGAAAT
Found at i:73471293 original size:22 final size:23
Alignment explanation
Indices: 73471253--73471301 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
73471243 TCCACATGTA
*
73471253 TTTTATGCTATTTTGTTTTTGAAT
1 TTTTATGC-ATTTTGTTTTTAAAT
*
73471277 TTTTATG-ATTTTTTTTTTAAAT
1 TTTTATGCATTTTGTTTTTAAAT
73471299 TTT
1 TTT
73471302 AATTTTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 16 0.70
24 7 0.30
ACGTcount: A:0.18, C:0.02, G:0.08, T:0.71
Consensus pattern (23 bp):
TTTTATGCATTTTGTTTTTAAAT
Found at i:73471331 original size:17 final size:17
Alignment explanation
Indices: 73471309--73471345 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
73471299 TTTAATTTTG
*
73471309 ATTTTTTTAATTTTTAA
1 ATTTTTATAATTTTTAA
73471326 ATTTTTATAATTTTTAA
1 ATTTTTATAATTTTTAA
73471343 ATT
1 ATT
73471346 ATTTCTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTATAATTTTTAA
Found at i:73471341 original size:9 final size:8
Alignment explanation
Indices: 73471290--73471345 Score: 55
Period size: 8 Copynumber: 7.2 Consensus size: 8
73471280 TATGATTTTT
73471290 TTTTTAAA
1 TTTTTAAA
73471298 -TTTT-AA
1 TTTTTAAA
* *
73471304 -TTTTGAT
1 TTTTTAAA
*
73471311 TTTTTTAA
1 TTTTTAAA
73471319 TTTTTAAA
1 TTTTTAAA
73471327 TTTTTATAA
1 TTTTTA-AA
73471336 TTTTTAAA
1 TTTTTAAA
73471344 TT
1 TT
73471346 ATTTCTTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
6 6 0.15
7 5 0.12
8 22 0.54
9 8 0.20
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (8 bp):
TTTTTAAA
Found at i:73472657 original size:128 final size:128
Alignment explanation
Indices: 73472520--73472778 Score: 500
Period size: 128 Copynumber: 2.0 Consensus size: 128
73472510 CGATGTATAT
73472520 TACCATTGTACTGATTAAAATTATTATTTTTAAGATTCAAACACATAATTTTCACAACTTGGTGG
1 TACCATTGTACTGATTAAAATTATTATTTTTAAGATTCAAACACATAATTTTCACAACTTGGTGG
73472585 TGAGAAAGATATGAATAAATGATTTGATCCTTCAAATAATTATGTTTCTTTTAAGGACATAGA
66 TGAGAAAGATATGAATAAATGATTTGATCCTTCAAATAATTATGTTTCTTTTAAGGACATAGA
* *
73472648 TACCATTGTACTGATTAAAATTATTATTTTTGAGATTCAAATACATAATTTTCACAACTTGGTGG
1 TACCATTGTACTGATTAAAATTATTATTTTTAAGATTCAAACACATAATTTTCACAACTTGGTGG
73472713 TGAGAAAGATATGAATAAATGATTTGATCCTTCAAATAATTATGTTTCTTTTAAGGACATAGA
66 TGAGAAAGATATGAATAAATGATTTGATCCTTCAAATAATTATGTTTCTTTTAAGGACATAGA
73472776 TAC
1 TAC
73472779 GTAATATTTT
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 129 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.39
Consensus pattern (128 bp):
TACCATTGTACTGATTAAAATTATTATTTTTAAGATTCAAACACATAATTTTCACAACTTGGTGG
TGAGAAAGATATGAATAAATGATTTGATCCTTCAAATAATTATGTTTCTTTTAAGGACATAGA
Found at i:73472914 original size:2 final size:2
Alignment explanation
Indices: 73472907--73472947 Score: 73
Period size: 2 Copynumber: 20.0 Consensus size: 2
73472897 CCATGATCTA
73472907 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
73472948 GTATTAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73476628 original size:41 final size:41
Alignment explanation
Indices: 73476575--73476659 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
73476565 CACAGCCGGG
73476575 GATGGTTTGGAGAAAAAAGACAGAAATTTCAGACCTTGGAT
1 GATGGTTTGGAGAAAAAAGACAGAAATTTCAGACCTTGGAT
73476616 GATGGTTTGGAGAAAAAAGACAGAAATTTCAGACCTTGGAT
1 GATGGTTTGGAGAAAAAAGACAGAAATTTCAGACCTTGGAT
73476657 GAT
1 GAT
73476660 CGTTGAAAGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.39, C:0.09, G:0.27, T:0.25
Consensus pattern (41 bp):
GATGGTTTGGAGAAAAAAGACAGAAATTTCAGACCTTGGAT
Found at i:73490070 original size:42 final size:43
Alignment explanation
Indices: 73489968--73490080 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 43
73489958 AGCTCGTACA
* * * *
73489968 ATGCCAAC-GTCCCAAACATGGTCTTACATGTAATTAAATATTG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGAAATCAAATATAG
* *
73490011 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCATATA-AG
1 ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAATATAG
* * *
73490053 ATGGCAGTGTCCCAGACATAGTCTTACA
1 ATGCCACTGTCCCAGACATGGTCTTACA
73490081 CGTAAATCTC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAATATAG
Found at i:73491474 original size:42 final size:42
Alignment explanation
Indices: 73491363--73491517 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
73491353 GGGCTGGTAC
* * *
73491363 ATGCCATATCCCAGACATGGTCTTACATGTAA-TCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATAG
* *
73491405 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATAG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
* * *
73491448 ATGCCATATCCCAGATATGGTATTACACGAAGTCTCATTTTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
73491490 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
73491518 ATAGTCCTAG
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 66 0.66
43 34 0.34
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
Found at i:73500219 original size:29 final size:29
Alignment explanation
Indices: 73500186--73500259 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
73500176 CCTTCGAGCT
73500186 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
73500215 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73500244 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73500260 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73500220 original size:58 final size:58
Alignment explanation
Indices: 73500127--73500259 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
73500117 ATACTCGATT
* * * * *
73500127 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
73500185 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
73500243 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
73500260 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:73509729 original size:29 final size:29
Alignment explanation
Indices: 73509688--73509848 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
73509678 CCCTCGAACT
** * * *
73509688 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
73509717 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73509746 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73509775 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73509804 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73509833 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73509849 ATCTCGTCAC
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73511782 original size:30 final size:30
Alignment explanation
Indices: 73511748--73511808 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73511738 TTGAATTTTG
73511748 TAATTGATATTCAAGTTAAACTGAAAAACT
1 TAATTGATATTCAAGTTAAACTGAAAAACT
** * * *
73511778 TAATTTTTATTCAAGTTGATCTGAATAACT
1 TAATTGATATTCAAGTTAAACTGAAAAACT
73511808 T
1 T
73511809 GATTAACTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (30 bp):
TAATTGATATTCAAGTTAAACTGAAAAACT
Found at i:73516814 original size:40 final size:40
Alignment explanation
Indices: 73516749--73516889 Score: 232
Period size: 40 Copynumber: 3.5 Consensus size: 40
73516739 ACCCAAGTAT
*
73516749 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
*
73516788 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
*
73516828 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
73516868 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
73516890 CATCCGAATA
Statistics
Matches: 96, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 11 0.11
40 84 0.88
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:73538666 original size:12 final size:12
Alignment explanation
Indices: 73538649--73538675 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73538639 ACACATGCCT
73538649 GTGTGCTAGGCC
1 GTGTGCTAGGCC
73538661 GTGTGCTAGGCC
1 GTGTGCTAGGCC
73538673 GTG
1 GTG
73538676 CCAAACCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.44, T:0.26
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:73540864 original size:39 final size:39
Alignment explanation
Indices: 73540820--73540979 Score: 302
Period size: 39 Copynumber: 4.1 Consensus size: 39
73540810 AATTATGTTA
*
73540820 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73540859 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73540898 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
73540937 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73540976 CCAG
1 CCAG
73540980 TGTCTTGCTT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:73547600 original size:39 final size:39
Alignment explanation
Indices: 73547556--73547681 Score: 198
Period size: 39 Copynumber: 3.1 Consensus size: 39
73547546 AATTATGTTA
*
73547556 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73547595 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTA-----GCCCGGATACATTT
73547639 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73547678 CCAG
1 CCAG
73547682 TGTCTTGCTT
Statistics
Matches: 81, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
39 42 0.52
44 39 0.48
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:73547644 original size:44 final size:44
Alignment explanation
Indices: 73547556--73547669 Score: 184
Period size: 44 Copynumber: 2.7 Consensus size: 44
73547546 AATTATGTTA
*
73547556 CCAGCACAAAGCCTGCGGGACTTTA-----GCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGCCCGGATACATTT
73547595 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGCCCGGATACATTT
73547639 CCAGCACGAAGCCTGCGGGACTTTAGCCCGG
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGG
73547670 ATACATTTCC
Statistics
Matches: 69, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
39 24 0.35
44 45 0.65
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (44 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGCCCGGATACATTT
Found at i:73551751 original size:48 final size:48
Alignment explanation
Indices: 73551680--73552024 Score: 635
Period size: 48 Copynumber: 7.3 Consensus size: 48
73551670 AGATAAATAT
73551680 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73551728 ATATGTATATGTGGTAAAGCCGAATGGC---TGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73551773 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73551821 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
73551869 ATATATATATGTGGTAAAGCCGAATGGCTAA-GTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
73551916 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
73551964 ATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73552012 ATATGTATATGTG
1 ATATGTATATGTG
73552025 TGAAATATAT
Statistics
Matches: 289, Mismatches: 4, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
45 45 0.16
47 47 0.16
48 197 0.68
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:73551947 original size:95 final size:96
Alignment explanation
Indices: 73551680--73552024 Score: 635
Period size: 95 Copynumber: 3.6 Consensus size: 96
73551670 AGATAAATAT
73551680 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
73551745 AGCCGAATGGC---TGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
73551773 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
73551838 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
* *
73551869 ATATATATATGTGGTAAAGCCGAATGGCTAA-GTGAAATATGTATGAGATATATATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
73551933 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
*
73551964 ATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
73552025 TGAAATATAT
Statistics
Matches: 243, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
93 76 0.31
95 92 0.38
96 75 0.31
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:73551982 original size:143 final size:141
Alignment explanation
Indices: 73551680--73552189 Score: 744
Period size: 143 Copynumber: 3.7 Consensus size: 141
73551670 AGATAAATAT
73551680 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
73551745 AGCCGAATGGCTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 AGCCGAATGGCTGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAA
73551810 ATATGTATGAG
131 ATATGTATGAG
*
73551821 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
73551886 AGCCGAATGGCTAAGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTG
66 AGCCGAATGGCT--GTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTG
73551951 AAATATGTATGAG
129 AAATATGTATGAG
*
73551964 ATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT-GT--
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * * *
73552026 ----GAA--------ATATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAA
66 AGCCGAATGGCTGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTG-A
*
73552079 ATATATATATGAG
130 A-ATATGTATGAG
* *
73552092 ATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
73552157 AGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
66 AGCCGAATGGC---TGTGAAATATGTATGAGAT
73552190 GTGTGTACAT
Statistics
Matches: 331, Mismatches: 16, Indels: 39
0.86 0.04 0.10
Matches are distributed among these distances:
126 43 0.13
127 2 0.01
128 67 0.20
129 2 0.01
135 3 0.01
136 3 0.01
141 76 0.23
142 2 0.01
143 121 0.37
146 12 0.04
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (141 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAA
ATATGTATGAG
Found at i:73552023 original size:17 final size:17
Alignment explanation
Indices: 73552001--73552052 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
73551991 CTAATGTGAA
73552001 ATATGTATGAGATATGT
1 ATATGTATGAGATATGT
*
73552018 ATATGTGTGA-A-A--T
1 ATATGTATGAGATATGT
*
73552031 ATATATATGAGATATGT
1 ATATGTATGAGATATGT
73552048 ATATG
1 ATATG
73552053 CGGTAAAGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
13 9 0.33
14 1 0.04
15 2 0.07
16 1 0.04
17 14 0.52
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (17 bp):
ATATGTATGAGATATGT
Found at i:73552052 original size:78 final size:80
Alignment explanation
Indices: 73551953--73552104 Score: 245
Period size: 78 Copynumber: 1.9 Consensus size: 80
73551943 CTAATGTGAA
* * *
73551953 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATAT
1 ATATATATGAGATATGCATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATAT
73552016 GTATATGTGTGAAAT
66 GTATATGTGTGAAAT
* *
73552031 ATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATAT
1 ATATATATGAGATATGCATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATAT
73552096 GTATATGTG
66 GTATATGTG
73552105 GTAAAGCCAA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
78 42 0.63
79 2 0.03
80 23 0.34
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (80 bp):
ATATATATGAGATATGCATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATAT
GTATATGTGTGAAAT
Found at i:73552120 original size:176 final size:173
Alignment explanation
Indices: 73551858--73552189 Score: 538
Period size: 176 Copynumber: 1.9 Consensus size: 173
73551848 CTAATGTGAA
* * *
73551858 ATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAAGTGAAATATGTATGAGATATATA
1 ATATATATGAGATATATATATGCGGTAAAGCCGAATGGCTAAGTGAAATATATATGAGATATATA
*
73551923 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAA
66 TATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAA
*
73551988 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGTGAAAT
131 TGGCTAATGTGAAATATGTAGGAGATATGTATATGTGTGAAAT
* *
73552031 ATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATAT
1 ATATATATGAGATATATATATGCGGTAAAGCCGAATGGCTA-AGTG-AA-ATATATATGAGATAT
* * *
73552096 GTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
63 ATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCC
*
73552161 GAATGGCTAGTGTGAAATATGTAGGAGAT
128 GAATGGCTAATGTGAAATATGTAGGAGAT
73552190 GTGTGTACAT
Statistics
Matches: 145, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
173 38 0.26
174 3 0.02
175 2 0.01
176 102 0.70
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (173 bp):
ATATATATGAGATATATATATGCGGTAAAGCCGAATGGCTAAGTGAAATATATATGAGATATATA
TATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATATGTAGGAGATATGTATATGTGTGAAAT
Found at i:73552136 original size:128 final size:126
Alignment explanation
Indices: 73551905--73552152 Score: 406
Period size: 128 Copynumber: 2.0 Consensus size: 126
73551895 GCTAAGTGAA
* * *
73551905 ATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATATATGAGATATATATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGC
*
73551970 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGTGAAAT
66 ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGTGAAAT
* *
73552031 ATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATAT
1 ATATATATGAGATATATATATGCGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATAT
* *
73552096 GTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTG
64 GCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
73552153 GTAAAGCCGA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
126 42 0.38
127 2 0.02
128 68 0.61
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (126 bp):
ATATATATGAGATATATATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGC
ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGTGAAAT
Found at i:73552183 original size:48 final size:50
Alignment explanation
Indices: 73552022--73552180 Score: 277
Period size: 50 Copynumber: 3.2 Consensus size: 50
73552012 ATATGTATAT
*
73552022 GTGTGAAATATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTA
1 GTGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
73552072 GTGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTA
1 GTGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
73552122 GTGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 GTGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
73552170 GTGTGAAATAT
1 GTGTGAAATAT
73552181 GTAGGAGATG
Statistics
Matches: 103, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
48 44 0.43
49 4 0.04
50 55 0.53
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (50 bp):
GTGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
Found at i:73552189 original size:48 final size:48
Alignment explanation
Indices: 73552022--73552189 Score: 255
Period size: 48 Copynumber: 3.4 Consensus size: 48
73552012 ATATGTATAT
* *
73552022 GTGTGAAATATATATATGAGATATGTATATGCGGTAAAGCCGAATGGCTA
1 GTGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
73552072 GTGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCAAATGGCTA
1 GTGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
73552122 GTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 GTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
73552170 GTGTGAAATATGTAGGAGAT
1 GTGTGAAATATGTATGAGAT
73552190 GTGTGTACAT
Statistics
Matches: 113, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
48 58 0.51
49 2 0.02
50 53 0.47
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
GTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
Found at i:73552380 original size:37 final size:37
Alignment explanation
Indices: 73552330--73552432 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
73552320 GGAAATATAT
73552330 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73552367 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
73552404 CCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
73552433 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Done.