Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 247 of 328
Found at i:73555049 original size:19 final size:19
Alignment explanation
Indices: 73555013--73555051 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
73555003 TTTTCATCAT
* *
73555013 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
73555032 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
73555051 A
1 A
73555052 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:73555556 original size:55 final size:55
Alignment explanation
Indices: 73555491--73555608 Score: 141
Period size: 55 Copynumber: 2.1 Consensus size: 55
73555481 AGCATGGCTG
* * *
73555491 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGA-ACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
73555547 CCAGAACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
73555602 CCAGAAC
1 CCAGAAC
73555609 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
54 1 0.02
55 32 0.59
56 21 0.39
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (55 bp):
CCAGAACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:73555573 original size:27 final size:27
Alignment explanation
Indices: 73555505--73555608 Score: 118
Period size: 28 Copynumber: 3.7 Consensus size: 27
73555495 ATACAGAAAA
* *
73555505 TGTGACAGAGTCACCAGATACAGATATTT
1 TGTGGCAGAGCCACCAGA-ACAGATA-TT
* *
73555534 TGTGGCAGTGCCACCAGAACAGATATA
1 TGTGGCAGAGCCACCAGAACAGATATT
* *
73555561 CGTGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCAGAGCCACCAGAACAGAT-ATT
*
73555589 TGTGGCATAGCCACCAGAAC
1 TGTGGCAGAGCCACCAGAAC
73555609 GCTTCCTCCA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 23 0.36
28 26 0.41
29 15 0.23
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
TGTGGCAGAGCCACCAGAACAGATATT
Found at i:73555757 original size:28 final size:28
Alignment explanation
Indices: 73555710--73555777 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
73555700 AAATTAACCC
* *
73555710 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
73555738 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
73555766 TAGGGGTATAAT
1 TAGGGGTATAAT
73555778 AGCACATCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:73557742 original size:2 final size:2
Alignment explanation
Indices: 73557735--73557759 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73557725 TAACATCGTG
73557735 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
73557760 GTGAATGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73563836 original size:40 final size:38
Alignment explanation
Indices: 73563792--73563934 Score: 160
Period size: 39 Copynumber: 3.6 Consensus size: 38
73563782 GTTCAAAACA
* ** * *
73563792 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
* *
73563832 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
*
73563872 CCTTCGGGCTTAGCCCGAGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCG-GTATCATAACTCGCACAATTG
73563911 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGG-TATCA
73563935 CTCGAACATT
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 48 0.53
40 41 0.46
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (38 bp):
CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTG
Found at i:73563906 original size:39 final size:39
Alignment explanation
Indices: 73563822--73563935 Score: 167
Period size: 39 Copynumber: 2.9 Consensus size: 39
73563812 TATGGTAACC
* *
73563822 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73563862 CGCACAATTGCCTTCGGGCTTAGCCC-GAGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGA-TATCACAACT
73563901 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
73563936 TCGAACATTC
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
38 2 0.03
39 46 0.69
40 19 0.28
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73567257 original size:40 final size:40
Alignment explanation
Indices: 73567202--73567403 Score: 282
Period size: 40 Copynumber: 5.0 Consensus size: 40
73567192 GATGATAACT
* * *
73567202 GGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCC
* *
73567242 GGGCTGAGTCCCGAAGGCATTTGTGCGAGCTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
73567282 GGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
73567322 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
73567362 GGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
73567402 GG
1 GG
73567404 TTAAATCCTG
Statistics
Matches: 147, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 3 0.02
40 144 0.98
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:73572990 original size:42 final size:39
Alignment explanation
Indices: 73572900--73573030 Score: 151
Period size: 39 Copynumber: 3.3 Consensus size: 39
73572890 TCTAGAGATG
73572900 AAGTCCCGAAGGCATTTGTGCGAGTTACTATATCGGGCT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTATATCGGGCT
73572939 AAGTCCCGAAGGCATTTGGTGCCCGAGTTTACTATATCGGGCT
1 AAGTCCCGAAGGCATTT-GTG--CGAG-TTACTATATCGGGCT
* * * * *
73572982 ATGT-CCGAAGGCATTCGAGCGAG-TAGCTATATCCGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCGGGCT
73573020 AA-TCCCGAAGG
1 AAGTCCCGAAGG
73573031 TACTTGGCTT
Statistics
Matches: 80, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
37 3 0.04
38 18 0.22
39 21 0.26
40 3 0.04
41 2 0.03
42 15 0.19
43 18 0.22
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACTATATCGGGCT
Found at i:73575282 original size:21 final size:21
Alignment explanation
Indices: 73575258--73575298 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73575248 AAAGCCGAGG
73575258 AGCTCATAAGGAGAAAAGGAA
1 AGCTCATAAGGAGAAAAGGAA
* * *
73575279 AGCTGATATGGAGCAAAGGA
1 AGCTCATAAGGAGAAAAGGA
73575299 GTTTCGTAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.10, G:0.32, T:0.12
Consensus pattern (21 bp):
AGCTCATAAGGAGAAAAGGAA
Found at i:73580970 original size:40 final size:41
Alignment explanation
Indices: 73580915--73581132 Score: 254
Period size: 40 Copynumber: 5.5 Consensus size: 41
73580905 TGGATGATAA
* *
73580915 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAG-TGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTGACTA-TAT
*
73580955 CCGGGCTGAGTCCCGAAGGCATTTGTGCGAGCT-ACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTGACTATAT
*
73580995 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTGACTATAT
* * *
73581035 CTGGGCTAAGTCCCGAAGGCATTGGTGCGAG-TTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTGACTATAT
* * *
73581075 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-T-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTGA-CTATAT
* *
73581115 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73581133 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 16 0.10
40 141 0.89
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTGACTATAT
Found at i:73585379 original size:43 final size:43
Alignment explanation
Indices: 73585331--73585700 Score: 379
Period size: 43 Copynumber: 8.7 Consensus size: 43
73585321 ATTGTAAAAA
*
73585331 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * * * * * * *
73585374 GTGTAAAACCCTATTTGGGATAGTGGAATCGATATGTG-TTCTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATT-AC
* * ** * *
73585417 GTGTAAGACCATATCTAGGATGTTGGTATCAATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * * *
73585460 ATGTAAGACCACGTTTGGGACGTTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * * * *
73585503 ATGTAAGACCCTATCTGGGATAGTGGCATCGATATGTG-TTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * * *
73585545 ATGTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATTAT
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * *
73585588 GTGTAAGACCATGTCTAGGACATCGGCATC-ATATTTGATT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * * *
73585629 GTGTAAGACCTTATTTGGGACAGTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
*
73585672 ATGTAAGACCATGTCTGGGACATTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
73585701 TGTACGATAT
Statistics
Matches: 265, Mismatches: 57, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
41 24 0.09
42 56 0.21
43 183 0.69
44 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
Found at i:73587054 original size:50 final size:51
Alignment explanation
Indices: 73586994--73587098 Score: 176
Period size: 50 Copynumber: 2.1 Consensus size: 51
73586984 TATGCATAAT
* * *
73586994 AGAATTTGTATTCAATGAATTGGTCTTATGTATGACCTTTGATACATTGTA
1 AGAATTTGTATTCAATGAATTAGCCTTATGTATGACCTTTGATACATTGCA
73587045 AGAA-TTGTATTCAATGAATTAGCCTTATGTATGACCTTTGATACATTGCA
1 AGAATTTGTATTCAATGAATTAGCCTTATGTATGACCTTTGATACATTGCA
73587095 AGAA
1 AGAA
73587099 AGGAGATATT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
50 47 0.92
51 4 0.08
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.39
Consensus pattern (51 bp):
AGAATTTGTATTCAATGAATTAGCCTTATGTATGACCTTTGATACATTGCA
Found at i:73594044 original size:30 final size:30
Alignment explanation
Indices: 73594010--73594067 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
73594000 CCATATACAT
*
73594010 ATATTTAGGATATTTT-ACAAATTAGTCCTC
1 ATATTT-GCATATTTTGACAAATTAGTCCTC
* *
73594040 ATATTTTCATATTTTGACAATTTAGTCC
1 ATATTTGCATATTTTGACAAATTAGTCC
73594068 CTAATTCACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.47
Consensus pattern (30 bp):
ATATTTGCATATTTTGACAAATTAGTCCTC
Found at i:73596608 original size:48 final size:49
Alignment explanation
Indices: 73596528--73596653 Score: 139
Period size: 48 Copynumber: 2.6 Consensus size: 49
73596518 TATGATAGCT
* * * **
73596528 AGTGTAAGACCATGTATGGGACATGGTATTAGCATTGATATGTG-TGCC
1 AGTGTAAGACCATATATGGGATATGGCATTAGCATCAATATGTGATGCC
* * * **
73596576 AGTGTAAGACCATATTTGGGATATGGCGTTAGCCTCAATATGTGATTTC
1 AGTGTAAGACCATATATGGGATATGGCATTAGCATCAATATGTGATGCC
*
73596625 A-TGTAAGACCATATCTGGGATATGGCATT
1 AGTGTAAGACCATATATGGGATATGGCATT
73596654 GATAGGAGAT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 62 0.95
49 3 0.05
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (49 bp):
AGTGTAAGACCATATATGGGATATGGCATTAGCATCAATATGTGATGCC
Found at i:73596678 original size:42 final size:42
Alignment explanation
Indices: 73596619--73596824 Score: 148
Period size: 42 Copynumber: 4.8 Consensus size: 42
73596609 CTCAATATGT
* * *
73596619 GATTTCATGTAAGACCATATCTGGGATATGGCATTGATAGGA
1 GATTTCGTGTAAGACCATGTCTGGGATATGGCATCGATAGGA
* *
73596661 GATTTCGTGTAAGACCATGTCTGGGACATGGCATCAAT-GTGA
1 GATTTCGTGTAAGACCATGTCTGGGATATGGCATCGATAG-GA
* ** * * *
73596703 GGTCCCGTGTAAGACCATGTTTGGGACATAGAATCGGCA-CTGACATGA
1 GATTTCGTGTAAGACCATGTCTGGG--AT---AT-GGCATC-GATAGGA
* * *
73596751 GATTTCGTATAAGACCATATCTGGGATATGGCATCGATATGTA
1 GATTTCGTGTAAGACCATGTCTGGGATATGGCATCGATA-GGA
** * *
73596794 GA-CCCATGTAAGACCATGTCTGGGACATGGC
1 GATTTCGTGTAAGACCATGTCTGGGATATGGC
73596825 TTTGGAATTC
Statistics
Matches: 125, Mismatches: 28, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
41 1 0.01
42 86 0.69
43 6 0.05
44 1 0.01
46 2 0.02
47 3 0.02
48 26 0.21
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGATATGGCATCGATAGGA
Found at i:73600378 original size:2 final size:2
Alignment explanation
Indices: 73600371--73600400 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
73600361 TTGTAAGCTC
73600371 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73600401 GTGTGTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73604895 original size:19 final size:18
Alignment explanation
Indices: 73604866--73604912 Score: 76
Period size: 19 Copynumber: 2.6 Consensus size: 18
73604856 GTATATATTT
73604866 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
73604884 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTAGGTAGA
*
73604903 TAAGTTTATT
1 TAAATTTATT
73604913 AATATTCTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:73604972 original size:42 final size:42
Alignment explanation
Indices: 73604922--73605015 Score: 118
Period size: 42 Copynumber: 2.3 Consensus size: 42
73604912 TAATATTCTA
** * * *
73604922 GAAA-TATTTTATTTTATCTTTTAGTGGTTTATTAGAATAAG
1 GAAACTATTTTACCTTATATTTTAGTAGTTTATTAAAATAAG
* *
73604963 GGAACTATTTTCCCTTATATTTTAGTAGTTTATTAAAATAAG
1 GAAACTATTTTACCTTATATTTTAGTAGTTTATTAAAATAAG
73605005 GAAACTATTTT
1 GAAACTATTTT
73605016 CCCAATTAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 3 0.07
42 41 0.93
ACGTcount: A:0.33, C:0.06, G:0.13, T:0.48
Consensus pattern (42 bp):
GAAACTATTTTACCTTATATTTTAGTAGTTTATTAAAATAAG
Found at i:73605016 original size:42 final size:42
Alignment explanation
Indices: 73604935--73605018 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
73604925 ATATTTTATT
* * * *
73604935 TTATCTTTTAGTGGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATATTTTAGTAGTTTATTAAAATAAGGAAACTATTTTCCC
73604977 TTATATTTTAGTAGTTTATTAAAATAAGGAAACTATTTTCCC
1 TTATATTTTAGTAGTTTATTAAAATAAGGAAACTATTTTCCC
73605019 AATTAAGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (42 bp):
TTATATTTTAGTAGTTTATTAAAATAAGGAAACTATTTTCCC
Found at i:73606362 original size:38 final size:38
Alignment explanation
Indices: 73606297--73606390 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
73606287 TCAATCATGC
* *
73606297 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
73606336 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
73606374 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
73606391 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 41 0.79
39 11 0.21
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:73606628 original size:24 final size:24
Alignment explanation
Indices: 73606582--73606676 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
73606572 GCTTTATCAT
*
73606582 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
73606607 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
73606631 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
73606654 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73606677 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73606661 original size:47 final size:49
Alignment explanation
Indices: 73606582--73606675 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
73606572 GCTTTATCAT
*
73606582 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
73606631 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
73606676 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:73606752 original size:20 final size:20
Alignment explanation
Indices: 73606727--73606786 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
73606717 TATGATTACC
73606727 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
73606747 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
73606767 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
73606787 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:73606861 original size:25 final size:25
Alignment explanation
Indices: 73606829--73606876 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73606819 ATACATAAAC
* * *
73606829 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73606854 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73606877 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73614655 original size:38 final size:38
Alignment explanation
Indices: 73614590--73614683 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
73614580 TCAATCATGC
* *
73614590 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
73614629 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
73614667 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
73614684 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 41 0.79
39 11 0.21
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:73614921 original size:24 final size:24
Alignment explanation
Indices: 73614875--73614969 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
73614865 GCTTTATCAT
*
73614875 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
73614900 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
73614924 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
73614947 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73614970 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73614954 original size:47 final size:49
Alignment explanation
Indices: 73614875--73614968 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
73614865 GCTTTATCAT
*
73614875 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
73614924 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
73614969 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:73615045 original size:20 final size:20
Alignment explanation
Indices: 73615020--73615079 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
73615010 TATGATTACC
73615020 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
73615040 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
73615060 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
73615080 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:73615154 original size:25 final size:25
Alignment explanation
Indices: 73615122--73615169 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73615112 ATACATAAAC
* * *
73615122 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73615147 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73615170 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73621473 original size:2 final size:2
Alignment explanation
Indices: 73621466--73621503 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
73621456 ACATTCCATT
73621466 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
73621504 TATATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:73625017 original size:2 final size:2
Alignment explanation
Indices: 73625010--73625046 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73625000 TTGTAAGCTC
73625010 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73625047 CGTGCATGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73628121 original size:10 final size:10
Alignment explanation
Indices: 73628106--73628155 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
73628096 TAATTTTAGG
73628106 ATTTAT-TTT
1 ATTTATCTTT
73628115 CATTTATCTTT
1 -ATTTATCTTT
73628126 ATTTATCTTT
1 ATTTATCTTT
73628136 ATTTAT-TTGT
1 ATTTATCTT-T
73628146 ATTTATCTTT
1 ATTTATCTTT
73628156 TAGAATTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:73628909 original size:17 final size:18
Alignment explanation
Indices: 73628877--73628910 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
73628867 TATTCCTCAT
73628877 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
73628895 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
73628911 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:73630200 original size:18 final size:20
Alignment explanation
Indices: 73630164--73630210 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
73630154 AGTTGTAAGT
73630164 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
73630184 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
73630203 ATGATATA
1 AT-ATATA
73630211 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:73630635 original size:50 final size:50
Alignment explanation
Indices: 73630557--73630902 Score: 374
Period size: 50 Copynumber: 6.9 Consensus size: 50
73630547 ATCCGTTGTG
* *
73630557 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
* * * * *
73630607 AGTCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACC-CATTAACTT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA-TA
* *
73630657 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
1 AG-TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
* * * * *
73630708 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CACG-TTAACTT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA-GATTGA-TA
* * * * * *
73630758 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
1 AG-TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
* ** *
73630809 AGTCATATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTGATA
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
* ** *
73630859 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
73630903 GAGCTTCGAT
Statistics
Matches: 243, Mismatches: 45, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
49 9 0.04
50 153 0.63
51 74 0.30
52 7 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATA
Found at i:73630736 original size:101 final size:101
Alignment explanation
Indices: 73630559--73630841 Score: 476
Period size: 101 Copynumber: 2.8 Consensus size: 101
73630549 CCGTTGTGAG
73630559 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACATGTGTAGTAC
*
73630624 TAAGTGTAGGCTACTATGCGTACCCATTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
* * *
73630660 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACATGTGTAGTAC
* *
73630725 TAAGTGCAGGCTACTATGCGTACACGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
* * * *
73630761 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCATATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACATGTGTAGTAC
73630826 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
73630842 CATGTACCGG
Statistics
Matches: 169, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 169 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
Found at i:73631123 original size:16 final size:16
Alignment explanation
Indices: 73631102--73631133 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73631092 AGAATAGAGT
73631102 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
73631118 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
73631134 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:73634609 original size:29 final size:29
Alignment explanation
Indices: 73634570--73634648 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
73634560 CTTAATAATC
*
73634570 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73634600 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73634629 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73634649 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73635308 original size:2 final size:2
Alignment explanation
Indices: 73635290--73635323 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
73635280 TGATGGCCGA
* *
73635290 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73635324 CAACTATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73637683 original size:20 final size:21
Alignment explanation
Indices: 73637644--73637691 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
73637634 GATTTGATAT
*
73637644 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
*
73637665 ACATGATATG-TATGTTATGC
1 ACATGATATGATATGATATGC
73637685 ACATGAT
1 ACATGAT
73637692 GTATTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:73638036 original size:31 final size:30
Alignment explanation
Indices: 73638001--73638082 Score: 96
Period size: 29 Copynumber: 2.7 Consensus size: 30
73637991 CGTTTACAGT
73638001 AAAGGCTTCGGCCCAGTGATATGAATT-ATG
1 AAAGGCTTCGGCCCAGT-ATATGAATTAATG
* * *
73638031 AAAAGGCTTCGTCCCAGTA-ATCATTTAATG
1 -AAAGGCTTCGGCCCAGTATATGAATTAATG
*
73638061 AAAGACTTCGGCCCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
73638083 TTGAGACTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 21 0.49
30 6 0.14
31 16 0.37
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGAATTAATG
Found at i:73644830 original size:2 final size:2
Alignment explanation
Indices: 73644823--73644850 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
73644813 CTGATTTTAA
73644823 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73644851 TCAGTAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73660833 original size:16 final size:16
Alignment explanation
Indices: 73660814--73660854 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
73660804 TAATTTTTTA
73660814 AAAATTATAAAGAT-AT
1 AAAATTATAAA-ATGAT
73660830 AAAA-TATTAAAATGAT
1 AAAATTA-TAAAATGAT
73660846 AAAATTATA
1 AAAATTATA
73660855 TTTTTACTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 4 0.18
16 16 0.73
17 2 0.09
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
AAAATTATAAAATGAT
Found at i:73662166 original size:15 final size:15
Alignment explanation
Indices: 73662148--73662179 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73662138 GTGTGGGATA
*
73662148 TAATTTAATTAATTT
1 TAATTTAATAAATTT
73662163 TAATTTAATAAATTT
1 TAATTTAATAAATTT
73662178 TA
1 TA
73662180 GAATATTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATTTAATAAATTT
Found at i:73664722 original size:20 final size:20
Alignment explanation
Indices: 73664686--73664743 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
73664676 TAGCTCGTCC
* * *
73664686 AGCTCACAACCATCTCAGCA
1 AGCTCACATCCAGCTCAACA
**
73664706 AGCTCAGTTCCAGCTCAACA
1 AGCTCACATCCAGCTCAACA
*
73664726 AGTTCACATCCAGCTCAA
1 AGCTCACATCCAGCTCAA
73664744 TTTCAGCTCA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.36, G:0.12, T:0.19
Consensus pattern (20 bp):
AGCTCACATCCAGCTCAACA
Found at i:73671279 original size:26 final size:26
Alignment explanation
Indices: 73671243--73671296 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
73671233 CCGAGAGGAG
73671243 ATGGGCTGTTTCAAGTTTTGGAACGA
1 ATGGGCTGTTTCAAGTTTTGGAACGA
* *
73671269 ATGGGTTGTTTCAAGTTTTGGAATGA
1 ATGGGCTGTTTCAAGTTTTGGAACGA
73671295 AT
1 AT
73671297 AAATGATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.07, G:0.30, T:0.39
Consensus pattern (26 bp):
ATGGGCTGTTTCAAGTTTTGGAACGA
Found at i:73674327 original size:36 final size:36
Alignment explanation
Indices: 73674280--73674357 Score: 147
Period size: 36 Copynumber: 2.2 Consensus size: 36
73674270 TTTAAAAGTT
*
73674280 TTATGTCAACAAGAAAGTTTAGTTTAAAACTACTTC
1 TTATTTCAACAAGAAAGTTTAGTTTAAAACTACTTC
73674316 TTATTTCAACAAGAAAGTTTAGTTTAAAACTACTTC
1 TTATTTCAACAAGAAAGTTTAGTTTAAAACTACTTC
73674352 TTATTT
1 TTATTT
73674358 AGGTTAATTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (36 bp):
TTATTTCAACAAGAAAGTTTAGTTTAAAACTACTTC
Found at i:73674733 original size:20 final size:20
Alignment explanation
Indices: 73674710--73674757 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
73674700 ATCCATCTTC
**
73674710 TTTATTTTTTTCCTTATTGT
1 TTTATTTTTTGACTTATTGT
* *
73674730 TTTAATCTTTGACTTATTGT
1 TTTATTTTTTGACTTATTGT
*
73674750 TCTATTTT
1 TTTATTTT
73674758 ATTTATCTTA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTATTTTTTGACTTATTGT
Found at i:73674772 original size:13 final size:13
Alignment explanation
Indices: 73674756--73674787 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
73674746 TTGTTCTATT
73674756 TTATTTATCTTAA
1 TTATTTATCTTAA
*
73674769 TTATTTATTTTAA
1 TTATTTATCTTAA
73674782 TTATTT
1 TTATTT
73674788 TACCTGACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (13 bp):
TTATTTATCTTAA
Found at i:73676767 original size:30 final size:30
Alignment explanation
Indices: 73676722--73676782 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
73676712 ATTTAATACG
*
73676722 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
73676752 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
73676782 A
1 A
73676783 GCTCGGGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:73681700 original size:6 final size:6
Alignment explanation
Indices: 73681689--73681723 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
73681679 TATGCATAGT
*
73681689 CAGATA CAGATA CAGATA CAGATA CAAATA CAGAT
1 CAGATA CAGATA CAGATA CAGATA CAGATA CAGAT
73681724 TTAATTTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.51, C:0.17, G:0.14, T:0.17
Consensus pattern (6 bp):
CAGATA
Found at i:73682545 original size:47 final size:47
Alignment explanation
Indices: 73682489--73682583 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
73682479 GGACAAAAAT
73682489 GGGCATGCATGGAAAATTTTGGAAGTTTAGTAAGGACAGACATTTTG
1 GGGCATGCATGGAAAATTTTGGAAGTTTAGTAAGGACAGACATTTTG
*
73682536 GGGCATGCATGGAAAATTTTGGAAGTTTAGTAAGGACAGGCATTTTG
1 GGGCATGCATGGAAAATTTTGGAAGTTTAGTAAGGACAGACATTTTG
73682583 G
1 G
73682584 TCATTTGGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GGGCATGCATGGAAAATTTTGGAAGTTTAGTAAGGACAGACATTTTG
Found at i:73683230 original size:19 final size:19
Alignment explanation
Indices: 73683206--73683264 Score: 118
Period size: 19 Copynumber: 3.1 Consensus size: 19
73683196 GGAGGTCGAC
73683206 CGTGGGAAACGAAAGGTTT
1 CGTGGGAAACGAAAGGTTT
73683225 CGTGGGAAACGAAAGGTTT
1 CGTGGGAAACGAAAGGTTT
73683244 CGTGGGAAACGAAAGGTTT
1 CGTGGGAAACGAAAGGTTT
73683263 CG
1 CG
73683265 GACTAACCGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.31, C:0.12, G:0.37, T:0.20
Consensus pattern (19 bp):
CGTGGGAAACGAAAGGTTT
Found at i:73689283 original size:46 final size:45
Alignment explanation
Indices: 73689233--73689408 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 45
73689223 ATGGTTGGCA
73689233 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAG-G
* * *
73689279 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAGG
*
73689324 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGG
* *
73689372 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73689409 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 67 0.60
47 30 0.27
48 4 0.04
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGG
Found at i:73689388 original size:93 final size:93
Alignment explanation
Indices: 73689229--73689400 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73689219 TAGGATGGTT
** *
73689229 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGTGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73689294 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
73689322 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73689387 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
73689401 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:73692394 original size:15 final size:15
Alignment explanation
Indices: 73692355--73692433 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
73692345 GTATCTTGGG
*
73692355 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
73692370 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
73692385 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
73692399 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
73692414 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
73692428 TTTCTT
1 TTTCTT
73692434 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73692418 original size:29 final size:29
Alignment explanation
Indices: 73692346--73692432 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
73692336 CATAGTATCG
* * * *
73692346 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
73692376 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
73692405 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
73692433 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:73694863 original size:46 final size:46
Alignment explanation
Indices: 73694808--73694988 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
73694798 TAGGATGGTT
73694808 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
73694854 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
73694900 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
73694947 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73694989 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:73694969 original size:93 final size:93
Alignment explanation
Indices: 73694810--73694980 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
73694800 GGATGGTTGA
* *
73694810 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73694875 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73694903 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73694968 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73694981 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73700111 original size:39 final size:39
Alignment explanation
Indices: 73700064--73700246 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
73700054 AATGTTCGAG
73700064 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
73700103 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
73700142 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
73700181 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
73700221 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
73700247 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:73703614 original size:29 final size:29
Alignment explanation
Indices: 73703581--73703741 Score: 214
Period size: 29 Copynumber: 5.6 Consensus size: 29
73703571 GTGACAAGAT
73703581 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73703610 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73703639 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
73703668 TGGCACTAAATGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
73703697 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
73703726 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
73703742 GGCTTAAATT
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 116 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:73706874 original size:24 final size:24
Alignment explanation
Indices: 73706847--73706909 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
73706837 CTTATTATGT
73706847 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
73706871 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
73706895 TCGCACACATAGTGC
1 TCGCACACATAGTGC
73706910 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:73709865 original size:43 final size:42
Alignment explanation
Indices: 73709787--73709898 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 42
73709777 TGAGATTATG
* * *
73709787 TGTAAGACCATATTTGGGATATGACATCGATATGAGA-CTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATC-CCA
* *
73709829 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCCA
73709872 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
73709899 TGGTATGGTG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
42 24 0.39
43 36 0.59
44 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:73712436 original size:29 final size:29
Alignment explanation
Indices: 73712403--73712565 Score: 204
Period size: 29 Copynumber: 5.6 Consensus size: 29
73712393 GTGTCGAGAT
73712403 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73712432 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
73712461 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
73712490 TGGCACTAAGTGTGCAAGCTGGAAAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG--AAATATA
** * *
73712521 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73712548 CGTGGCACTAAGTGTGCG
1 --TGGCACTAAGTGTGCG
73712566 AAATCGAGTA
Statistics
Matches: 118, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
27 2 0.02
28 3 0.03
29 91 0.77
31 22 0.19
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:73712561 original size:89 final size:87
Alignment explanation
Indices: 73712402--73712565 Score: 215
Period size: 89 Copynumber: 1.9 Consensus size: 87
73712392 GGTGTCGAGA
** * *
73712402 TTGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCAC
1 TTGGCACTAAGTGTGCAAGCTGGAAAAATATGGCACTAAGTGTGCGAGCTGGAAATATATGGCAC
73712467 TAAGTGTGCGTGCTGGAAATAT
66 TAAGTGTGCGTGCTGGAAATAT
** *
73712489 TTGGCACTAAGTGTGCAAGCTGGAAAAAAATATGGCACTGTGTGTGCGAGCT-TAAAT-TACGTG
1 TTGGCACTAAGTGTGCAAGCTGG--AAAAATATGGCACTAAGTGTGCGAGCTGGAAATATA--TG
73712552 GCACTAAGTGTGCG
62 GCACTAAGTGTGCG
73712566 AAATCGAGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
87 23 0.35
88 4 0.06
89 39 0.59
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (87 bp):
TTGGCACTAAGTGTGCAAGCTGGAAAAATATGGCACTAAGTGTGCGAGCTGGAAATATATGGCAC
TAAGTGTGCGTGCTGGAAATAT
Found at i:73727330 original size:29 final size:29
Alignment explanation
Indices: 73727297--73727356 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
73727287 CATCTAAGAC
73727297 AAATTACTTGGTACATCATTATTATGACT
1 AAATTACTTGGTACATCATTATTATGACT
73727326 AAATTACTTGGTACATCATTATTATGACT
1 AAATTACTTGGTACATCATTATTATGACT
73727355 AA
1 AA
73727357 CTTGTTGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (29 bp):
AAATTACTTGGTACATCATTATTATGACT
Found at i:73733366 original size:43 final size:43
Alignment explanation
Indices: 73733218--73733367 Score: 144
Period size: 42 Copynumber: 3.5 Consensus size: 43
73733208 ATGTGTTATT
* * * * * *
73733218 GTGTAAGACCACGTTTGGCACATTGACATTGACT-TATGATTTAT
1 GTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTAC
*
73733262 GTGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGATTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTAC
* * *
73733304 GTATAAGATCC-TGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGA-CCACGTCTGGGACATTGGCATCGATATTTGATTAC
* *
73733347 ATGTAAGACCACGTTTGGGAC
1 GTGTAAGACCACGTCTGGGAC
73733368 GTTGACATTG
Statistics
Matches: 87, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 30 0.34
43 30 0.34
44 27 0.31
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTAC
Found at i:73734625 original size:6 final size:7
Alignment explanation
Indices: 73734593--73734631 Score: 62
Period size: 7 Copynumber: 5.6 Consensus size: 7
73734583 TAATATTTAC
73734593 TTAAAAT
1 TTAAAAT
73734600 TTAAAAT
1 TTAAAAT
73734607 TTAAAAT
1 TTAAAAT
73734614 TTAAAA-
1 TTAAAAT
73734620 TTAAAAT
1 TTAAAAT
73734627 ATTAA
1 -TTAA
73734632 TACTAGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.20
7 20 0.67
8 4 0.13
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
TTAAAAT
Found at i:73739111 original size:40 final size:40
Alignment explanation
Indices: 73739055--73739168 Score: 185
Period size: 40 Copynumber: 2.9 Consensus size: 40
73739045 AAAAAAATAG
73739055 AACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
1 AACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
*
73739095 GACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
1 AACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
* * *
73739135 AAC-CGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 AACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
73739169 GTTACATCCG
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 28 0.41
40 41 0.59
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (40 bp):
AACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
Found at i:73747347 original size:40 final size:39
Alignment explanation
Indices: 73747277--73747383 Score: 171
Period size: 39 Copynumber: 2.7 Consensus size: 39
73747267 AAAAAATATA
*
73747277 ACCGGGTTAAGT-CCGATGGCATTCGTGCGGGTTATTAT
1 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
73747315 GACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
1 -ACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
* *
73747355 AACGGGTTAAGTCCCGAAGGCATTTGTGC
1 ACCGGGTTAAGTCCCGAAGGCATTCGTGC
73747384 TGTTTGTTAC
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
39 39 0.61
40 25 0.39
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.28
Consensus pattern (39 bp):
ACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAT
Found at i:73749776 original size:40 final size:40
Alignment explanation
Indices: 73749670--73749853 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
73749660 TGCTGGAAAT
* * * * * **
73749670 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
73749710 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
73749750 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
73749788 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
73749829 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
73749854 GTTTGAACAA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:73752732 original size:15 final size:15
Alignment explanation
Indices: 73752712--73752750 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
73752702 TATCATTTCA
73752712 ATATATAATTTAAAT
1 ATATATAATTTAAAT
*
73752727 ATATATAAATTTTAAT
1 ATATAT-AATTTAAAT
73752743 ATAT-TAAT
1 ATATATAAT
73752751 AATATATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 7 0.32
16 12 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATATAATTTAAAT
Found at i:73752740 original size:17 final size:14
Alignment explanation
Indices: 73752712--73752813 Score: 51
Period size: 13 Copynumber: 7.5 Consensus size: 14
73752702 TATCATTTCA
73752712 ATATATAATTTAAAT
1 ATATATAATTT-AAT
73752727 ATATATAAATTTTAAT
1 ATATAT-AA-TTTAAT
73752743 ATAT-TAA--TAAT
1 ATATATAATTTAAT
* *
73752754 ATAT-TAATATATT
1 ATATATAATTTAAT
73752767 A-ATA-ATATTTAAT
1 ATATATA-ATTTAAT
*
73752780 AATATATAA-ATAAT
1 -ATATATAATTTAAT
*
73752794 AT-TAATAATATAAT
1 ATAT-ATAATTTAAT
73752808 A-ATATA
1 ATATATA
73752814 GAAAGAAAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 26
0.70 0.04 0.26
Matches are distributed among these distances:
11 11 0.15
12 4 0.06
13 18 0.25
14 14 0.20
15 11 0.15
16 10 0.14
17 3 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATATATAATTTAAT
Found at i:73752751 original size:8 final size:9
Alignment explanation
Indices: 73752738--73752812 Score: 84
Period size: 8 Copynumber: 8.1 Consensus size: 9
73752728 TATATAAATT
73752738 TTAAT-ATA
1 TTAATAATA
73752746 TTAATAATATA
1 TTAAT-A-ATA
73752757 TTAAT-ATA
1 TTAATAATA
73752765 TTAATAATA
1 TTAATAATA
73752774 TTTAATAATA
1 -TTAATAATA
73752784 TATAAATAATA
1 T-T-AATAATA
73752795 TTAATAATA
1 TTAATAATA
73752804 -TAATAATA
1 TTAATAATA
73752812 T
1 T
73752813 AGAAAGAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 15
0.80 0.00 0.20
Matches are distributed among these distances:
8 21 0.36
9 11 0.19
10 11 0.19
11 16 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TTAATAATA
Found at i:73752755 original size:11 final size:11
Alignment explanation
Indices: 73752739--73752811 Score: 86
Period size: 11 Copynumber: 7.2 Consensus size: 11
73752729 ATATAAATTT
73752739 TAATATATTAA
1 TAATATATTAA
73752750 TAATATA-T--
1 TAATATATTAA
73752758 TAATATATTAA
1 TAATATATTAA
73752769 TAATAT-TTAA
1 TAATATATTAA
*
73752779 TAATATATAAA
1 TAATATATTAA
73752790 T-A-ATATTAA
1 TAATATATTAA
*
73752799 TAATATAATAA
1 TAATATATTAA
73752810 TA
1 TA
73752812 TAGAAAGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
8 7 0.13
9 8 0.15
10 13 0.25
11 25 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TAATATATTAA
Found at i:73752825 original size:30 final size:29
Alignment explanation
Indices: 73752733--73752825 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 29
73752723 AAATATATAT
* **
73752733 AAATTTTAAT-ATATTAATAATAT-ATTA
1 AAATATTAATAATATTAATAATATAAAAA
* *
73752760 ATATATTAATAATATTTAATAATATATAAA
1 AAATATTAATAATA-TTAATAATATAAAAA
*
73752790 TAATATTAATAATA-TAATAATATAGAAAGA
1 AAATATTAATAATATTAATAATATA-AAA-A
73752820 AAATAT
1 AAATAT
73752826 GCGTTATATA
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
27 8 0.15
28 13 0.25
29 12 0.23
30 19 0.37
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (29 bp):
AAATATTAATAATATTAATAATATAAAAA
Found at i:73754203 original size:31 final size:33
Alignment explanation
Indices: 73754139--73754245 Score: 116
Period size: 31 Copynumber: 3.4 Consensus size: 33
73754129 GAATAGGCCT
*
73754139 TTAAATTAATAATTTATTTTAATTATACTTAAA
1 TTAAATTAATAATTTATTCTAATTATACTTAAA
* *
73754172 TTAAATTATTAATTT-TTCTATTTA-ACTTAAA
1 TTAAATTAATAATTTATTCTAATTATACTTAAA
** *
73754203 TTAAA-TAATAATAAATTCTAAATATAC-TAAA
1 TTAAATTAATAATTTATTCTAATTATACTTAAA
73754234 TATAAA-TAATAA
1 T-TAAATTAATAA
73754246 CTAAATAATA
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
30 6 0.10
31 24 0.38
32 19 0.30
33 14 0.22
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.46
Consensus pattern (33 bp):
TTAAATTAATAATTTATTCTAATTATACTTAAA
Found at i:73754252 original size:11 final size:11
Alignment explanation
Indices: 73754236--73754293 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
73754226 ATACTAAATA
73754236 TAAATAATAAC
1 TAAATAATAAC
*
73754247 TAAATAATAAG
1 TAAATAATAAC
73754258 TAAATAGA-AATC
1 TAAATA-ATAA-C
73754270 T-AA-AAT--C
1 TAAATAATAAC
73754277 TAAATAATAAC
1 TAAATAATAAC
73754288 TAAATA
1 TAAATA
73754294 GAAATAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
7 2 0.05
8 2 0.05
9 4 0.11
10 1 0.03
11 27 0.71
12 2 0.05
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (11 bp):
TAAATAATAAC
Found at i:73754330 original size:25 final size:26
Alignment explanation
Indices: 73754296--73754389 Score: 97
Period size: 25 Copynumber: 3.6 Consensus size: 26
73754286 ACTAAATAGA
*
73754296 AATAAAAATATATAAAAAT-ATATAT
1 AATAATAATATATAAAAATAATATAT
73754321 AATAATAATATAT-AAAATAATATAT
1 AATAATAATATATAAAAATAATATAT
* *
73754346 AAATAGATAATATAATAATAGATAATAGAT
1 -AATA-ATAATAT-ATAA-AAATAATATAT
73754376 AAT-ATAATA-ATAAA
1 AATAATAATATATAAA
73754390 TAGATAGAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
24 6 0.10
25 22 0.37
26 4 0.07
27 13 0.22
28 2 0.03
29 4 0.07
30 9 0.15
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (26 bp):
AATAATAATATATAAAAATAATATAT
Found at i:73754375 original size:22 final size:21
Alignment explanation
Indices: 73754312--73754409 Score: 101
Period size: 22 Copynumber: 4.5 Consensus size: 21
73754302 AATATATAAA
*
73754312 AATATATATAATAATAATATAT
1 AATATA-ATAATAATAATAGAT
*
73754334 AAAATAAT-AT-ATAAATAGAT
1 AATATAATAATAAT-AATAGAT
73754354 AATATAATAATAGATAATAGAT
1 AATATAATAATA-ATAATAGAT
73754376 AATATAATAATAAATAGATAGAAT
1 AATATAATAAT-AATA-ATAG-AT
*
73754400 AATAAAATAA
1 AATATAATAA
73754410 ATAGTTGTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
19 2 0.03
20 15 0.23
21 4 0.06
22 26 0.40
23 7 0.11
24 11 0.17
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AATATAATAATAATAATAGAT
Found at i:73754403 original size:12 final size:12
Alignment explanation
Indices: 73754303--73754403 Score: 82
Period size: 12 Copynumber: 8.1 Consensus size: 12
73754293 AGAAATAAAA
*
73754303 ATATATAAAAAT
1 ATATATAATAAT
73754315 ATATATAATAAT
1 ATATATAATAAT
73754327 AATATATAA-AAT
1 -ATATATAATAAT
73754339 AATATATAAATAGAT
1 -ATATAT-AATA-AT
73754354 A-ATATAATAAT
1 ATATATAATAAT
*
73754365 AGATAATAGATAAT
1 ATAT-ATA-ATAAT
73754379 ATA-ATAATAAAT
1 ATATATAAT-AAT
* *
73754391 AGATAGAATAAT
1 ATATATAATAAT
73754403 A
1 A
73754404 AAATAAATAG
Statistics
Matches: 76, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
11 5 0.07
12 39 0.51
13 21 0.28
14 9 0.12
15 2 0.03
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:73756249 original size:40 final size:39
Alignment explanation
Indices: 73756081--73756251 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
73756071 AGAAATTGAA
* *
73756081 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
73756121 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
73756161 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
73756201 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
73756241 TGATATCCGGG
1 TGATATCCGGG
73756252 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:73757758 original size:14 final size:14
Alignment explanation
Indices: 73757739--73757779 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
73757729 TTATAAATCG
73757739 AAATATATTAATAT
1 AAATATATTAATAT
*
73757753 AAATATAATAATAT
1 AAATATATTAATAT
73757767 AAATATTATTAAT
1 AAATA-TATTAAT
73757780 TACTTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATTAATAT
Found at i:73757836 original size:26 final size:26
Alignment explanation
Indices: 73757745--73757837 Score: 81
Period size: 23 Copynumber: 3.8 Consensus size: 26
73757735 ATCGAAATAT
*
73757745 ATTAATA-TAAATA-TAATAATATAA
1 ATTAATATTAATTACTAATAATATAA
* *
73757769 A-TATTATTAATTACT--TAATAT-T
1 ATTAATATTAATTACTAATAATATAA
* * *
73757791 CTTAATATTAATAACAAATAATATAA
1 ATTAATATTAATTACTAATAATATAA
*
73757817 ATTAATATTAATTGCTAATAA
1 ATTAATATTAATTACTAATAA
73757838 CTTGTAATTT
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
23 21 0.41
24 6 0.12
25 7 0.14
26 17 0.33
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (26 bp):
ATTAATATTAATTACTAATAATATAA
Found at i:73759056 original size:19 final size:19
Alignment explanation
Indices: 73759034--73759073 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
73759024 TTAAACTTTT
* *
73759034 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
73759053 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
73759072 AT
1 AT
73759074 AAAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:73761795 original size:18 final size:19
Alignment explanation
Indices: 73761764--73761802 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
73761754 GGGAATTTGG
73761764 AATGGAGAAGAAGAAAGAA
1 AATGGAGAAGAAGAAAGAA
*
73761783 AATGGAG-AGAAGAGAGAA
1 AATGGAGAAGAAGAAAGAA
73761801 AA
1 AA
73761803 GATGTGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (19 bp):
AATGGAGAAGAAGAAAGAA
Found at i:73763826 original size:23 final size:22
Alignment explanation
Indices: 73763800--73763844 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
73763790 TTCTGTCGAA
73763800 AATAACCAAAATT-ACTCAAAATT
1 AATAA-CAAAATTAACT-AAAATT
*
73763823 AATAATAAAATTAACTAAAATT
1 AATAACAAAATTAACTAAAATT
73763845 CATCATGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (22 bp):
AATAACAAAATTAACTAAAATT
Found at i:73778052 original size:46 final size:45
Alignment explanation
Indices: 73777999--73778174 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
73777989 TATTTGGGCA
73777999 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
*** * * *
73778044 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAAGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-GAGC
* *
73778091 ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GC
* * *
73778139 T-CGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73778175 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
46 67 0.63
47 38 0.36
48 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:73778155 original size:93 final size:93
Alignment explanation
Indices: 73777996--73778166 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
73777986 GGATATTTGG
*
73777996 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
73778061 TGAGTCCGAGTTCGAGAGATGTAACTAA
66 TGAGTCCGAGTTCGAGAGATGTAACTAA
* * *
73778089 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC-T-CGAGCTTGTTGA
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GCGTCCGAACTCGTTGA
*
73778152 GTTGAGTCTGAGTTC
64 GTTGAGTCCGAGTTC
73778167 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
93 67 0.94
94 2 0.03
95 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAA
Found at i:73781267 original size:19 final size:19
Alignment explanation
Indices: 73781245--73781283 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73781235 TATATTAAGT
*
73781245 ATATATATAC-GTATTATAA
1 ATATATA-ACTGTATAATAA
73781264 ATATATAACTGTATAATAA
1 ATATATAACTGTATAATAA
73781283 A
1 A
73781284 ACATAAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
ATATATAACTGTATAATAA
Found at i:73781307 original size:3 final size:3
Alignment explanation
Indices: 73781299--73781381 Score: 166
Period size: 3 Copynumber: 27.7 Consensus size: 3
73781289 AACTAATACT
73781299 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
73781347 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
73781382 GTAGTAGTAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:73783562 original size:54 final size:55
Alignment explanation
Indices: 73783462--73783567 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
73783452 GCCCCGAGGC
* *
73783462 TCAACTCACCTCTAGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * * *
73783516 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
73783568 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:73783574 original size:13 final size:13
Alignment explanation
Indices: 73783547--73783580 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
73783537 GAGTTGATTC
*
73783547 TTGAACAACATAAA
1 TTGAA-AACAGAAA
73783561 TTGAAAACAGAAA
1 TTGAAAACAGAAA
73783574 TTGAAAA
1 TTGAAAA
73783581 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:73783654 original size:14 final size:14
Alignment explanation
Indices: 73783635--73783669 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
73783625 GCTGATTTTT
* *
73783635 TTGAAAAGTAGGAA
1 TTGAAAAGCAGAAA
73783649 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
73783663 TTGAAAA
1 TTGAAAA
73783670 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:73783760 original size:14 final size:14
Alignment explanation
Indices: 73783741--73783767 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73783731 AAAAATTAAA
73783741 AACAGAATTTGAAT
1 AACAGAATTTGAAT
73783755 AACAGAATTTGAA
1 AACAGAATTTGAA
73783768 ACTACCACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (14 bp):
AACAGAATTTGAAT
Found at i:73784231 original size:75 final size:72
Alignment explanation
Indices: 73783931--73784282 Score: 306
Period size: 73 Copynumber: 4.9 Consensus size: 72
73783921 AGAAATTAAA
* * * * *
73783931 AGGCTTAACTCACCTTTCGCAAGATGAGTCAATTTTCT-AAACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCATTTTTTTGAAACATAAACTAAAAATACCTCAGCG
* *
73783995 TGCCCCG
66 TGACCTG
** * * * * *
73784002 AGGCTCAACTCACCTCTCGCAATATGAGT--TGATTTTGGAACATAAATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCATTTTTTTGAAACATAAACTAAAAATACCTCAGCG
* *
73784065 TGTCTTG
66 TGACCTG
* * * * *
73784072 AGGCTCAATTCACCTCTTGCAATATGAG-C-TGATTTTTGAAACA-ACAGGAATTAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAT-TTTTTTGAAACATA-A--ACTAAAAATACCTC
73784134 AGCGTGACCTG
62 AGCGTGACCTG
**
73784145 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTC-ATTTTTTTGAAACATAAACTAAAAATACCTCAGC
73784210 GTGTGACCTG
65 --GTGACCTG
** * * * *
73784220 AGGCTCAACTCATTTCTCGCAATATGAGT--TGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAT-TTTTTTG-AAACATAAACTAAAAATACCTCAG
73784283 AGTACCCAAA
Statistics
Matches: 226, Mismatches: 41, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
69 3 0.01
70 53 0.23
71 36 0.16
72 1 0.00
73 64 0.28
74 22 0.10
75 45 0.20
76 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCATTTTTTTGAAACATAAACTAAAAATACCTCAGCG
TGACCTG
Found at i:73788585 original size:21 final size:21
Alignment explanation
Indices: 73788561--73788603 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73788551 AATTTCAAGA
73788561 TTCGTAACGGGCTTATTCATG
1 TTCGTAACGGGCTTATTCATG
73788582 TTCGTAACGGGCTTATTCATG
1 TTCGTAACGGGCTTATTCATG
73788603 T
1 T
73788604 CGTCAATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (21 bp):
TTCGTAACGGGCTTATTCATG
Found at i:73796635 original size:2 final size:2
Alignment explanation
Indices: 73796628--73796669 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
73796618 ACATGGAATA
* *
73796628 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73796670 GACTAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73797099 original size:19 final size:19
Alignment explanation
Indices: 73797077--73797115 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73797067 TATATTAAGT
*
73797077 ATATATATAC-GTATTATAA
1 ATATATA-ACTGTATAATAA
73797096 ATATATAACTGTATAATAA
1 ATATATAACTGTATAATAA
73797115 A
1 A
73797116 ACATTAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
ATATATAACTGTATAATAA
Found at i:73797137 original size:16 final size:16
Alignment explanation
Indices: 73797125--73797185 Score: 95
Period size: 16 Copynumber: 3.6 Consensus size: 16
73797115 AACATTAAAC
73797125 TAATATATAATTAATAA
1 TAATA-ATAATTAATAA
73797142 TAATAATAATAATAATAA
1 TAATAATAAT--TAATAA
73797160 TAATAATAATTAATAA
1 TAATAATAATTAATAA
73797176 TAATAATAAT
1 TAATAATAAT
73797186 AAATGTAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
16 21 0.50
17 5 0.12
18 16 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATAATAATTAATAA
Found at i:73797144 original size:3 final size:3
Alignment explanation
Indices: 73797125--73797187 Score: 99
Period size: 3 Copynumber: 20.0 Consensus size: 3
73797115 AACATTAAAC
73797125 TAA TATA TAA TTAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTAA
1 TAA TA-A TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
73797173 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
73797188 ATGTAATAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
3 48 0.84
4 9 0.16
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:73798340 original size:16 final size:16
Alignment explanation
Indices: 73798319--73798350 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73798309 TTTTGTGTAA
*
73798319 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
73798335 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
73798351 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:73799911 original size:15 final size:15
Alignment explanation
Indices: 73799872--73799951 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
73799862 GTATCTTGGG
* *
73799872 TTTCTTTATCCTGAA
1 TTTCTTTATTCTGGA
*
73799887 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
73799902 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
73799917 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
73799932 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
73799946 TTTCTT
1 TTTCTT
73799952 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
14 10 0.19
15 40 0.77
16 2 0.04
ACGTcount: A:0.11, C:0.19, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73802460 original size:79 final size:81
Alignment explanation
Indices: 73802369--73802552 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
73802359 ACGACTCGCT
** * *
73802369 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGC-CGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
73802431 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
73802448 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
73802512 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
73802528 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73802553 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 20 0.22
79 52 0.58
80 18 0.20
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:73802552 original size:40 final size:39
Alignment explanation
Indices: 73802362--73802552 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
73802352 GGATATAACG
* ** * *
73802362 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
73802402 ACTCGC-CGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
73802441 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
73802480 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
73802520 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
73802553 CATCATTCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
38 2 0.02
39 58 0.48
40 52 0.43
41 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:73805628 original size:46 final size:46
Alignment explanation
Indices: 73805578--73805752 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
73805568 TATTTGGGCA
*
73805578 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* *** * * * *
73805624 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAGCG
* *
73805671 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCA-AGCG
* *
73805717 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
73805753 CGCGGGTTAC
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 35 0.33
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
Found at i:73805733 original size:93 final size:93
Alignment explanation
Indices: 73805574--73805745 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
73805564 TGGATATTTG
* *
73805574 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
73805639 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
73805667 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGAACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCA-AACGCCCGAACTCGTTGA
73805731 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
73805746 ACTTATGCGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:73808888 original size:27 final size:27
Alignment explanation
Indices: 73808856--73809301 Score: 578
Period size: 27 Copynumber: 16.6 Consensus size: 27
73808846 AAGTACTCCT
*
73808856 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
**
73808883 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
73808910 AATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
73808937 -AGTTTACAGAATTATTGTTTTACCCTT
1 GA-TTTACAGAATTACCGTTTTACCCTC
**
73808964 GATTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
73808991 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
73809018 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
73809045 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
**
73809072 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
73809099 GATTTATAGAATTACCGTTTTATCCC-C
1 GATTTACAGAATTACCGTTTTA-CCCTC
* *
73809126 AATTTACATAATTACCGTTTTACCC-C
1 GATTTACAGAATTACCGTTTTACCCTC
* *
73809152 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
73809179 GATTTACAGAATTACCGTTTTGCCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
73809206 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
73809233 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
*
73809260 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
73809287 GATTTACAAAATTAC
1 GATTTACAGAATTAC
73809302 TAAAATACCC
Statistics
Matches: 370, Mismatches: 41, Indels: 16
0.87 0.10 0.04
Matches are distributed among these distances:
26 30 0.08
27 334 0.90
28 6 0.02
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:73810641 original size:9 final size:9
Alignment explanation
Indices: 73810629--73810685 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73810619 TTTGATAAAC
73810629 ATGATATGT
1 ATGATATGT
*
73810638 ATGATATGCAC
1 ATGATATG--T
*
73810649 ATGACATGT
1 ATGATATGT
*
73810658 ATGATATGCAC
1 ATGATATG--T
73810669 ATGATATGT
1 ATGATATGT
73810678 ATGATATG
1 ATGATATG
73810686 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:73810652 original size:20 final size:20
Alignment explanation
Indices: 73810627--73810689 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
73810617 ATTTTGATAA
73810627 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
73810647 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73810667 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73810687 ACA
1 ACA
73810690 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73810853 original size:23 final size:24
Alignment explanation
Indices: 73810743--73810932 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
73810733 GAGGAAGTGA
*
73810743 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
73810767 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
73810791 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
73810815 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
73810839 AAAA-GGCTTACGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
73810862 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
73810885 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
73810909 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73810933 ATGATAAAGC
Statistics
Matches: 152, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
22 3 0.02
23 33 0.22
24 105 0.69
25 11 0.07
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:73810872 original size:94 final size:97
Alignment explanation
Indices: 73810743--73810932 Score: 280
Period size: 94 Copynumber: 2.0 Consensus size: 97
73810733 GAGGAAGTGA
* * * *
73810743 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
*
73810808 AGTTATCAAAAG-GGCTTATGCC-CCAGTTATC
66 AGTTATCAAAAGAGGC-TAGGCCTCCAGTTATC
*
73810839 AAAA-GGCTTACGCCCCAATTATC-AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCC
1 AAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
*
73810902 AGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
66 AGTTATCAAAAGAGGCTAGGCCTCCAGTTAT
73810933 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
94 54 0.64
95 27 0.32
96 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (97 bp):
AAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
AGTTATCAAAAGAGGCTAGGCCTCCAGTTATC
Found at i:73811161 original size:31 final size:31
Alignment explanation
Indices: 73811126--73811207 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 31
73811116 CGTTTACCGT
*
73811126 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
73811157 AAAGGCTTCGGCTTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA-GTAATATGAAATATGA
73811189 AAAGGGCTAT-GGCCCAGTA
1 AAA-GGCT-TCGGCCCAGTA
73811208 CATGTTTGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
31 13 0.32
32 19 0.46
33 8 0.20
34 1 0.02
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:73815685 original size:29 final size:29
Alignment explanation
Indices: 73815652--73815782 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
73815642 GTGACGAGAT
73815652 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73815681 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
73815710 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
73815739 TGGCACTAAGTGTGCAAGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
73815767 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
73815783 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 14 0.15
29 80 0.85
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:73823748 original size:29 final size:29
Alignment explanation
Indices: 73823715--73823826 Score: 197
Period size: 29 Copynumber: 3.9 Consensus size: 29
73823705 GTGACGAGAT
73823715 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73823744 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
73823773 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
73823802 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
73823827 ATACGGCCCT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 80 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:73829196 original size:43 final size:43
Alignment explanation
Indices: 73829113--73829217 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 43
73829103 CGAAAAGCAT
* * * *
73829113 ATACAATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAACTGTCCCAGACGTGGTCCTACACGAAATCAA
*
73829155 ATATCGATGCC-ACTGTCCCAGACAG-GGTCCTACACGAAATCAG
1 ATA-CGATGCCAACTGTCCCAGAC-GTGGTCCTACACGAAATCAA
*
73829198 ATACGATGCCGA-TGTCCCAG
1 ATACGATGCCAACTGTCCCAG
73829218 GCATGGTCTT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
42 20 0.37
43 33 0.61
44 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (43 bp):
ATACGATGCCAACTGTCCCAGACGTGGTCCTACACGAAATCAA
Found at i:73832561 original size:38 final size:38
Alignment explanation
Indices: 73832512--73832587 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
73832502 TGGGTTGTGT
*
73832512 AAATTCCTGAACTTCCAAGTCTAATAGTTTGAACTGTA
1 AAATTCCTGAACTTCCAAGTCTAACAGTTTGAACTGTA
* *
73832550 AAATTCTTGAACTTCCAAGTTTAACAGTTTGAACTGTA
1 AAATTCCTGAACTTCCAAGTCTAACAGTTTGAACTGTA
73832588 GTTGTTAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (38 bp):
AAATTCCTGAACTTCCAAGTCTAACAGTTTGAACTGTA
Found at i:73835649 original size:27 final size:26
Alignment explanation
Indices: 73835560--73835673 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
73835550 AGCATGGCTG
*
73835560 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
73835586 CC-GATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
73835612 TCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATA-TTGTGACAGAGCCA
*
73835640 CCAGATCAGATATTTGTGACAGAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
*
73835667 CTAGAAC
1 CCAGAAC
73835674 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
25 2 0.03
26 22 0.29
27 34 0.45
28 18 0.24
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:73835650 original size:54 final size:54
Alignment explanation
Indices: 73835564--73835666 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
73835554 TGGCTGCCAG
* *
73835564 AACAGATATTGTGACAGAGTCACCGATACAGATA-TTGTGGCAGAGCCATCAGA
1 AACAGATATTGTGACAGAGCCACCGATACAGATATTTGTGACAGAGCCATCAGA
*
73835617 AACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGACAGAGCCA
1 AACAGATA-TTGTGACAGAGCCACC-GATACAGATATTTGTGACAGAGCCA
73835667 CTAGAACGCT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
53 8 0.18
54 20 0.45
55 16 0.36
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
AACAGATATTGTGACAGAGCCACCGATACAGATATTTGTGACAGAGCCATCAGA
Done.