Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 248 of 328
Found at i:73843452 original size:27 final size:28
Alignment explanation
Indices: 73843397--73843508 Score: 153
Period size: 27 Copynumber: 4.2 Consensus size: 28
73843387 AGCATGACTG
*
73843397 CCAGA-ACAGATA-TTGTA-CAGAGTCA
1 CCAGATACAGATATTTGTAGCAGAGCCA
* *
73843422 CCAGATACAGATA-TTGTGGCAGAGCTA
1 CCAGATACAGATATTTGTAGCAGAGCCA
*
73843449 CCAGAAACAGATATTTGTAGCAGAGCCA
1 CCAGATACAGATATTTGTAGCAGAGCCA
73843477 CCAGAT-CAGATATTTGTAGCAGAGCCA
1 CCAGATACAGATATTTGTAGCAGAGCCA
73843504 CCAGA
1 CCAGA
73843509 ACACTTCCTC
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
25 5 0.06
26 11 0.14
27 44 0.57
28 17 0.22
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (28 bp):
CCAGATACAGATATTTGTAGCAGAGCCA
Found at i:73843479 original size:55 final size:53
Alignment explanation
Indices: 73843397--73843509 Score: 158
Period size: 55 Copynumber: 2.1 Consensus size: 53
73843387 AGCATGACTG
* * *
73843397 CCAG-AACAGATATTGTACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCTA
1 CCAGAAACAGATATTGTACAGAGCCACCAGAT-CAGATATTTGTAGCAGAGCCA
73843449 CCAGAAACAGATATTTGTAGCAGAGCCACCAGATCAGATATTTGTAGCAGAGCCA
1 CCAGAAACAGATA-TTGTA-CAGAGCCACCAGATCAGATATTTGTAGCAGAGCCA
73843504 CCAGAA
1 CCAGAA
73843510 CACTTCCTCC
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
52 4 0.07
53 8 0.15
54 11 0.20
55 31 0.57
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (53 bp):
CCAGAAACAGATATTGTACAGAGCCACCAGATCAGATATTTGTAGCAGAGCCA
Found at i:73843642 original size:26 final size:26
Alignment explanation
Indices: 73843613--73843675 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 26
73843603 AAAATTAACC
73843613 CTAGGGGTATAATGGTAATTTTACAT-
1 CTAGGGGTATAATGGTAATTTT-CATA
73843639 CTAGGGGTATAATGGTAATTTTCATA
1 CTAGGGGTATAATGGTAATTTTCATA
73843665 CTTAGGGGTAT
1 C-TAGGGGTAT
73843676 TTTAGTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.09
26 23 0.66
27 9 0.26
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (26 bp):
CTAGGGGTATAATGGTAATTTTCATA
Found at i:73856927 original size:24 final size:24
Alignment explanation
Indices: 73856900--73856945 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
73856890 TCAAGGAATG
*
73856900 GATTATGGAGAAAATCAAGGAGAA
1 GATTAGGGAGAAAATCAAGGAGAA
* * *
73856924 GATTGGGGAGGAAATCATGGAG
1 GATTAGGGAGAAAATCAAGGAG
73856946 GGATTTTAAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.41, C:0.04, G:0.37, T:0.17
Consensus pattern (24 bp):
GATTAGGGAGAAAATCAAGGAGAA
Found at i:73858946 original size:54 final size:54
Alignment explanation
Indices: 73858881--73858983 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
73858871 TATGTTGATT
* *
73858881 ATGACTTTGTGCAAATCGTATTTAC-CAGTGGCTATGTGCCTATCATATTTATTG
1 ATGACTCTGTGCAAATCGTATTTACTCA-TGGCTATGTGCCAATCATATTTATTG
** * *
73858935 ATGACTCTGTGCCGATCGTATTTACTCATGGCTGTGTGCCAATTATATT
1 ATGACTCTGTGCAAATCGTATTTACTCATGGCTATGTGCCAATCATATT
73858984 ACCGTCGCTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 40 0.95
55 2 0.05
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Consensus pattern (54 bp):
ATGACTCTGTGCAAATCGTATTTACTCATGGCTATGTGCCAATCATATTTATTG
Found at i:73858972 original size:27 final size:27
Alignment explanation
Indices: 73858895--73858974 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
73858885 CTTTGTGCAA
*
73858895 ATCGTATTTAC-CAGTGGCTATGTGCCT
1 ATCGTATTTACTCA-TGGCTATGTGCCG
* * * * *
73858922 ATCATATTTATTGATGACTCTGTGCCG
1 ATCGTATTTACTCATGGCTATGTGCCG
*
73858949 ATCGTATTTACTCATGGCTGTGTGCC
1 ATCGTATTTACTCATGGCTATGTGCC
73858975 AATTATATTA
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 40 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (27 bp):
ATCGTATTTACTCATGGCTATGTGCCG
Found at i:73858983 original size:27 final size:27
Alignment explanation
Indices: 73858888--73858983 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 27
73858878 ATTATGACTT
* *
73858888 TGTGCAAATCGTATTTAC-CAGTGGCTA
1 TGTGCCAATCATATTTACTCA-TGGCTA
* * * * *
73858915 TGTGCCTATCATATTTATTGATGACTC
1 TGTGCCAATCATATTTACTCATGGCTA
* * *
73858942 TGTGCCGATCGTATTTACTCATGGCTG
1 TGTGCCAATCATATTTACTCATGGCTA
*
73858969 TGTGCCAATTATATT
1 TGTGCCAATCATATT
73858984 ACCGTCGCTG
Statistics
Matches: 52, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.40
Consensus pattern (27 bp):
TGTGCCAATCATATTTACTCATGGCTA
Found at i:73859064 original size:32 final size:32
Alignment explanation
Indices: 73858962--73859064 Score: 100
Period size: 32 Copynumber: 3.2 Consensus size: 32
73858952 GTATTTACTC
* * *
73858962 ATGGCTGTGTGCCAATTATATTACCGTCGCTG
1 ATGGCTTTGTGCCAATTATATTACCGTTGTTG
* * * * *
73858994 ATGGCTATATGCCAAATT-TATTACAGTTATCG
1 ATGGCTTTGTGCC-AATTATATTACCGTTGTTG
*
73859026 ATGGCTTTGTGCCAATTATAATACCGTTGTTG
1 ATGGCTTTGTGCCAATTATATTACCGTTGTTG
*
73859058 AAGGCTT
1 ATGGCTT
73859065 AAAGCCGTAT
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
31 4 0.07
32 47 0.85
33 4 0.07
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.37
Consensus pattern (32 bp):
ATGGCTTTGTGCCAATTATATTACCGTTGTTG
Found at i:73861871 original size:11 final size:12
Alignment explanation
Indices: 73861843--73861871 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
73861833 TACTCATATT
73861843 GATTTTTTTTTG
1 GATTTTTTTTTG
73861855 GATTTTTTTTTG
1 GATTTTTTTTTG
73861867 G-TTTT
1 GATTTT
73861872 GCACTTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.07, C:0.00, G:0.17, T:0.76
Consensus pattern (12 bp):
GATTTTTTTTTG
Found at i:73864015 original size:48 final size:48
Alignment explanation
Indices: 73863944--73864111 Score: 148
Period size: 48 Copynumber: 3.5 Consensus size: 48
73863934 TATGTGTGCT
* *
73863944 AGACCATGTTTGGGACATGGCATCGGCCACATT-ATA-A-GAGCCAGTGTA
1 AGACCATGTCT-GGACATGGCATCGG-C-CATTGAGACATGAGCCAGTGTA
*
73863992 AGACCATGTCTCGGACATGGCATCGG-CATTGAGACATGAGCTAGTGTA
1 AGACCATGTCT-GGACATGGCATCGGCCATTGAGACATGAGCCAGTGTA
* * * **
73864040 AGACCATGTCTGAGACATGGCATCGG-CGTCGACATGTGAGCCAGTGTA
1 AGACCATGTCTG-GACATGGCATCGGCCATTGAGACATGAGCCAGTGTA
* * *
73864088 AAACCATATCTGGGATATGGCATC
1 AGACCATGTCT-GGACATGGCATC
73864112 AGCAATTTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
45 4 0.04
46 2 0.02
47 2 0.02
48 93 0.91
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
AGACCATGTCTGGACATGGCATCGGCCATTGAGACATGAGCCAGTGTA
Found at i:73865604 original size:24 final size:24
Alignment explanation
Indices: 73865572--73865625 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
73865562 TTTATATTAT
73865572 GAAAGAAAGAATAATTAAAATAAG
1 GAAAGAAAGAATAATTAAAATAAG
73865596 GAAAGAAAGAATAATTAAAATAAG
1 GAAAGAAAGAATAATTAAAATAAG
73865620 GAAAGA
1 GAAAGA
73865626 GTGATAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.15
Consensus pattern (24 bp):
GAAAGAAAGAATAATTAAAATAAG
Found at i:73867973 original size:22 final size:22
Alignment explanation
Indices: 73867946--73868019 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
73867936 CACGCATATG
73867946 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
73867968 TGTGATGAATG-TGACAT-GCATATA
1 TGTGAT-AAGGCCGA-ATGGC-CA-A
73867992 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
73868014 TGTGAT
1 TGTGAT
73868020 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
22 17 0.43
23 12 0.30
24 11 0.28
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:73868037 original size:93 final size:94
Alignment explanation
Indices: 73867822--73868116 Score: 414
Period size: 93 Copynumber: 3.1 Consensus size: 94
73867812 TTAGGATTTT
** * * * *
73867822 ATGTGATGAATGTGAATGTGT-ATATATGAGATGAGGTCGAATGGCAAATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAACAT-TCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* *
73867886 CTGTATATATATGCGTGATAAGGCCGAATGGCCA
65 ATG--CATATAT--GTGATAAGGCCGAATGGCCA
** *
73867920 ATGTGATGAATGTGAACACGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-ACA
1 ATGTGATGAATGTGAACATTCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
73867984 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
73868013 ATGTGATGAATGTGAACATTCATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATTCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
73868078 CGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
73868107 ATGTGATGAA
1 ATGTGATGAA
73868117 CGTGGAAGTG
Statistics
Matches: 179, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
93 77 0.43
94 41 0.23
95 6 0.03
97 4 0.02
98 51 0.28
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATTCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73868079 original size:140 final size:143
Alignment explanation
Indices: 73867822--73868134 Score: 463
Period size: 140 Copynumber: 2.2 Consensus size: 143
73867812 TTAGGATTTT
* * * *
73867822 ATGTGATGAATGTGAATGTGTATATATGAGATGAGGTCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAA-GTGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
* *
73867887 TGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCATATGTGTGAT
65 TGTACATATAT-CGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCATATATGTGAT
73867952 AAGGCCGAATGGCCA
129 AAGGCCGAATGGCCA
* *
73867967 ATGTGATGAATGTGACA-TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGA-AGTGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
*
73868031 T-T-CATATAT-GTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACACGCATATATGTGATA
65 TGTACATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCATATATGTGATA
73868093 AGGCCGAATGGCCA
130 AGGCCGAATGGCCA
* *
73868107 ATGTGATGAACGTGGAAGTGTATATATG
1 ATGTGATGAATGT-GAAGTGCATATATG
73868135 TGGCGAAGCC
Statistics
Matches: 154, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
140 78 0.51
141 11 0.07
142 6 0.04
143 1 0.01
144 42 0.27
145 15 0.10
146 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (143 bp):
ATGTGATGAATGTGAAGTGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACAT
GTACATATATCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCATATATGTGATAA
GGCCGAATGGCCA
Found at i:73868088 original size:25 final size:25
Alignment explanation
Indices: 73868013--73868091 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
73868003 CGAATGGCCA
**
73868013 ATGTGATGAATGTGAACATTCATAT
1 ATGTGATGAATGTGAACACGCATAT
* ** *
73868038 ATGTGAT-AAGGCTGAA-TGGC-CA-
1 ATGTGATGAATG-TGAACACGCATAT
73868060 ATGTGATGAATGTGAACACGCATAT
1 ATGTGATGAATGTGAACACGCATAT
73868085 ATGTGAT
1 ATGTGAT
73868092 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 5 0.12
25 18 0.45
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAACACGCATAT
Found at i:73868151 original size:47 final size:47
Alignment explanation
Indices: 73867822--73868136 Score: 411
Period size: 47 Copynumber: 6.6 Consensus size: 47
73867812 TTAGGATTTT
** * * * *
73867822 ATGTGATGAATGTGAATGTGTATATATGAGATGAGGTCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
73867869 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
* * *
73867920 ATGTGATGAATGTGAACACGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
73867967 ATGTGATGAATGTG-ACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
73868013 ATGTGATGAATGTGAACAT-TCATATATGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGT-ATATATGTGATAAGGCCGAATGGCCA
* *
73868060 ATGTGATGAATGTGAACACGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
73868107 ATGTGATGAACGTGGAA-GTGTATATATGTG
1 ATGTGATGAATGT-GAACATGTATATATGTG
73868137 GCGAAGCCGA
Statistics
Matches: 239, Mismatches: 21, Indels: 16
0.87 0.08 0.06
Matches are distributed among these distances:
46 44 0.18
47 146 0.61
48 3 0.01
49 12 0.05
51 34 0.14
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:73868194 original size:46 final size:46
Alignment explanation
Indices: 73868140--73868246 Score: 169
Period size: 46 Copynumber: 2.3 Consensus size: 46
73868130 ATATGTGGCG
*
73868140 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGAATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGAATATGAGGTA
* * *
73868186 AAGTCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGAATATGAGGTA
*
73868232 AAGCCAAATGGCTAA
1 AAGCCGAATGGCTAA
73868247 GTTGAGATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.23
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGAATATGAGGTA
Found at i:73868260 original size:46 final size:45
Alignment explanation
Indices: 73868140--73868266 Score: 130
Period size: 46 Copynumber: 2.8 Consensus size: 45
73868130 ATATGTGGCG
* * *
73868140 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGAATATGAGGTA
1 AAGCCAAATGGCTAATGAGAAA-CTGTATGAGATGAATATGAGGTA
* * * * *
73868186 AAGTCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTA
1 AAGCCAAATGGCTAATGAGAAAC-TGTATGAGATGAATATGAGGTA
*
73868232 AAGCCAAATGGCTAAGTTGAGATA-TGTATGAGATG
1 AAGCCAAATGGCTAA--TGAGAAACTGTATGAGATG
73868267 TGTATATATA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 65 0.93
48 5 0.07
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (45 bp):
AAGCCAAATGGCTAATGAGAAACTGTATGAGATGAATATGAGGTA
Found at i:73869822 original size:40 final size:40
Alignment explanation
Indices: 73869773--73870003 Score: 351
Period size: 40 Copynumber: 5.8 Consensus size: 40
73869763 GAGTTATATA
*
73869773 TCCGGGCTAAGTCCCGAAGAGTATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
*
73869813 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
73869853 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
* *
73869893 TCCGGGCTATGT-CCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
** *
73869932 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTAATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
* *
73869972 TCCGGGCTAA-ACCTCAAAG-GCATTCGTGCTGG
1 TCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
73870004 AATTATAAGG
Statistics
Matches: 179, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 52 0.29
40 127 0.71
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
Found at i:73870010 original size:79 final size:80
Alignment explanation
Indices: 73869769--73870003 Score: 375
Period size: 79 Copynumber: 3.0 Consensus size: 80
73869759 TTGAGAGTTA
*
73869769 TATATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTGGTGTTATGTCCGGGCTAAGTCTCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCTCGAAGAG
73869834 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
* *
73869849 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTATGTC-CGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCTCGAAGAG
73869913 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
** * ** *
73869928 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTAATATATCCGGGCTAAACCTCAAAG-G
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCTCGAAGAG
73869992 CATTCGTGCTGG
66 CATTCGTGCTGG
73870004 AATTATAAGG
Statistics
Matches: 143, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
79 85 0.59
80 58 0.41
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCTCGAAGAG
CATTCGTGCTGGTGT
Found at i:73873776 original size:22 final size:22
Alignment explanation
Indices: 73873751--73873873 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
73873741 ACATGCATAT
73873751 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
73873773 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
73873797 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
73873820 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
73873844 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
73873867 ATGTGAT
1 ATGTGAT
73873874 GAACGTGGAA
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:73873906 original size:141 final size:141
Alignment explanation
Indices: 73873535--73873916 Score: 543
Period size: 141 Copynumber: 2.7 Consensus size: 141
73873525 TTAGGATTTT
* * * * * *
73873535 ATGTGATGAATGTGAATGTGTATATATGAGATGAGGCCGAATGGCAAATGTGATGAATGTGAACT
1 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAT
* * *
73873600 GTATATATATCCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
66 GTATATATGT--G-GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATA
73873665 AGGCCGAATGACCA
128 AGGCCGAATGACCA
*
73873679 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTAATGAATGTGAACA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A
*
73873744 TGCATATATGT-GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAG
65 TGTATATATGTGGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAG
*
73873808 GCCGAATGGCCA
130 GCCGAATGACCA
* * *
73873820 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGGAAG
1 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAAA
** *
73873885 TGTATATATGTGGCGAA-GCCGAATGGCTAATG
65 TGTATATATGTGGATAAGGCCGAATGGCCAATG
73873917 CGAAATGTGT
Statistics
Matches: 215, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
141 143 0.67
142 6 0.03
144 57 0.27
145 9 0.04
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAT
GTATATATGTGGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
CCGAATGACCA
Found at i:73873911 original size:47 final size:47
Alignment explanation
Indices: 73873535--73873876 Score: 533
Period size: 47 Copynumber: 7.2 Consensus size: 47
73873525 TTAGGATTTT
** * * * *
73873535 ATGTGATGAATGTGAATGTGTATATATGAGATGAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
73873582 ATGTGATGAATGTGAAC-TGTATATATATCCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* * *
73873632 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
73873679 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
73873726 ATGTAATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73873773 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73873820 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73873867 ATGTGATGAA
1 ATGTGATGAA
73873877 CGTGGAAGTG
Statistics
Matches: 275, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
46 2 0.01
47 226 0.82
48 7 0.03
49 4 0.01
50 34 0.12
51 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73873950 original size:46 final size:46
Alignment explanation
Indices: 73873900--73874026 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
73873890 ATATGTGGCG
73873900 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGAATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGAATATGAGGTA
* * *
73873946 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGAATATGAGGTA
* * * *
73873992 AAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
73874027 TGTATATATA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGAATATGAGGTA
Found at i:73877828 original size:46 final size:45
Alignment explanation
Indices: 73877742--73877913 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 45
73877732 CCACATTATG
* *
73877742 AGTGTAAGACCATGTCTAGGATATGGCATCGGCATTGAGACGAGTGC
1 AGTGTAAGACCATGTCTAGGACAT-GCATCGGCATCGAGACGAGT-C
* * * *
73877789 TAGTGTAAG-GCATGTCTGGGACATGCATCGGCCTCGAGACATAAGTC
1 -AGTGTAAGACCATGTCTAGGACATGCATCGGCATCGAGAC--GAGTC
* * * * *
73877836 AGCGTAATA-CATGTCT-GAGACATGCATCGGCTTCGAGATGTGTC
1 AGTGTAAGACCATGTCTAG-GACATGCATCGGCATCGAGACGAGTC
*
73877880 AGTGTAAGACCATGTCTAGGACACGGCATCGGCA
1 AGTGTAAGACCATGTCTAGGACA-TGCATCGGCA
73877914 CAGATATGCT
Statistics
Matches: 101, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.10
45 12 0.12
46 55 0.54
47 13 0.13
48 11 0.11
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTAGGACATGCATCGGCATCGAGACGAGTC
Found at i:73883588 original size:40 final size:39
Alignment explanation
Indices: 73883505--73883696 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
73883495 TCGAATGATG
* * * * *
73883505 TCCGGGCTAAGTCCCGAAGGCCTT-GTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
73883545 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
73883585 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
73883624 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
73883665 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
73883697 CGTTATATCC
Statistics
Matches: 125, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 33 0.26
40 85 0.68
41 7 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:73883644 original size:79 final size:82
Alignment explanation
Indices: 73883505--73883689 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
73883495 TCGAATGATG
* * * *
73883505 TCCGGGCTAAGTCCCGAAGGC-CTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
73883569 CGTGCGAGTTAATA-AA
66 CGTGCGAGTTAATATAA
* **
73883585 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
73883647 TCGTGCGAGTTACTATAA
65 TCGTGCGAGTTAATATAA
**
73883665 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73883690 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTAATATAA
Found at i:73886310 original size:46 final size:47
Alignment explanation
Indices: 73886242--73886336 Score: 174
Period size: 46 Copynumber: 2.0 Consensus size: 47
73886232 CTCTTTGTGA
73886242 AAAAAAAAGATGGTTTGATGAGATTGTGCATAAATTATCGGCAGCTT
1 AAAAAAAAGATGGTTTGATGAGATTGTGCATAAATTATCGGCAGCTT
*
73886289 AAAAAAAA-ATGGTTTGATGAGATTGTGCATAGATTATCGGCAGCTT
1 AAAAAAAAGATGGTTTGATGAGATTGTGCATAAATTATCGGCAGCTT
73886335 AA
1 AA
73886337 CAAGGTGACT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 39 0.83
47 8 0.17
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (47 bp):
AAAAAAAAGATGGTTTGATGAGATTGTGCATAAATTATCGGCAGCTT
Found at i:73890613 original size:29 final size:29
Alignment explanation
Indices: 73890581--73890687 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
73890571 ATACCCTCCG
**
73890581 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* * * *
73890610 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATTTTTCC
* *
73890639 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCGTATTTTTCC
*
73890668 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
73890688 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATTTTTCC
Found at i:73891599 original size:144 final size:143
Alignment explanation
Indices: 73891326--73891624 Score: 571
Period size: 144 Copynumber: 2.1 Consensus size: 143
73891316 TAATTCTATA
73891326 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
73891391 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
73891456 AGGAAGACAACAT
131 AGGAAAACAACAT
*
73891469 GCATGGCCGAATACTCATGCACACACACACATAATAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCC-T
73891534 TTTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACC
65 TTTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACC
73891599 AAGGAAAACAACAT
130 AAGGAAAACAACAT
73891613 GCATGGCCGAAT
1 GCATGGCCGAAT
73891625 TTTAACTCAC
Statistics
Matches: 153, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
143 62 0.41
144 91 0.59
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.22
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:73897803 original size:18 final size:18
Alignment explanation
Indices: 73897780--73897815 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
73897770 TACATGACAC
73897780 AAATTATGGCCACCTTAT
1 AAATTATGGCCACCTTAT
73897798 AAATTATGGCCACCTTAT
1 AAATTATGGCCACCTTAT
73897816 CAAAATTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
AAATTATGGCCACCTTAT
Found at i:73898561 original size:29 final size:29
Alignment explanation
Indices: 73898529--73898662 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
73898519 ATACCCTCCG
** * *
73898529 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * *
73898558 AGCTTGCACACATAGTGTCATAT-TTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
73898586 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
73898615 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
73898644 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
73898663 GATCTCGTCA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
28 23 0.25
29 69 0.75
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:73898614 original size:57 final size:58
Alignment explanation
Indices: 73898475--73898663 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
73898465 TACTCGATTT
* * * *** *
73898475 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** *
73898533 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
73898590 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
73898648 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
73898664 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
56 4 0.04
57 46 0.44
58 55 0.52
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:73899581 original size:144 final size:143
Alignment explanation
Indices: 73899306--73899604 Score: 571
Period size: 144 Copynumber: 2.1 Consensus size: 143
73899296 AAATTCTATA
73899306 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
*
73899371 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
73899436 AGGAAGACAACAT
131 AGGAAAACAACAT
73899449 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCC-T
73899514 TTTTGTTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACC
65 TTTTGTTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACC
73899579 AAGGAAAACAACAT
130 AAGGAAAACAACAT
73899593 GCATGGCCGAAT
1 GCATGGCCGAAT
73899605 TTTAACTCAC
Statistics
Matches: 153, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
143 63 0.41
144 90 0.59
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.22
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:73902335 original size:29 final size:29
Alignment explanation
Indices: 73902302--73902363 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
73902292 AGAAAAGAGA
73902302 TTGAGTATCAAGTTGGTGACAAAGTGTTC
1 TTGAGTATCAAGTTGGTGACAAAGTGTTC
73902331 TTGAGTATCAAGTTGGTGACAAAGTGTTC
1 TTGAGTATCAAGTTGGTGACAAAGTGTTC
73902360 TTGA
1 TTGA
73902364 AAGTGTCCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.35
Consensus pattern (29 bp):
TTGAGTATCAAGTTGGTGACAAAGTGTTC
Found at i:73904086 original size:53 final size:53
Alignment explanation
Indices: 73903904--73904112 Score: 197
Period size: 53 Copynumber: 3.9 Consensus size: 53
73903894 ATTAGGGTTT
* * * *
73903904 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCAAGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * ** * *
73903958 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTCATAAACTACGATAAGGC
1 AAGGATACCAAGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
73904013 AAAGAT-CCTATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACC-AAGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
*
73904066 AAGGATACCACAG-AAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCA-AGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCA
73904113 AAAAGGAAAT
Statistics
Matches: 123, Mismatches: 27, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
53 44 0.36
54 41 0.33
55 38 0.31
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCAAGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:73910576 original size:44 final size:44
Alignment explanation
Indices: 73910523--73910611 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
73910513 ATTTATTCTC
73910523 ATGAAAAGACTGAGCATTCAGAGCATTTGAGAAC-GATTTTACAG
1 ATGAAAAGACTGAGCATTCAGAGCATTTGAGAACAG-TTTTACAG
73910567 ATGAAAAGACTGAGCATTCAGAGCATTTGAGAACAGTTTTACAG
1 ATGAAAAGACTGAGCATTCAGAGCATTTGAGAACAGTTTTACAG
73910611 A
1 A
73910612 CTTTGAGAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 43 0.98
45 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.25
Consensus pattern (44 bp):
ATGAAAAGACTGAGCATTCAGAGCATTTGAGAACAGTTTTACAG
Found at i:73914157 original size:54 final size:54
Alignment explanation
Indices: 73914082--73914277 Score: 175
Period size: 54 Copynumber: 3.6 Consensus size: 54
73914072 AGGATACCAA
* * *
73914082 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTTTATAAGGCAAGGAAATCAT
* * * * **
73914136 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC-A--AAATCCCAT
1 GTAAGACCATGCCAAGACATGGCAATGGT-AAGTTTTATAAGGCAAGGAAAT--CAT
* * * * * * *
73914190 GTAAGACCATGCCAAGGCATTGCAATGGTGAG-TTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTTTATAAGGCAAGGAAATCAT
* *
73914243 GTAAGACCATGTCAAGACATGGAAATGGTAAGTTT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTT
73914278 AAAGGAAAGG
Statistics
Matches: 110, Mismatches: 25, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
52 11 0.10
53 31 0.28
54 56 0.51
55 12 0.11
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (54 bp):
GTAAGACCATGCCAAGACATGGCAATGGTAAGTTTTATAAGGCAAGGAAATCAT
Found at i:73917166 original size:77 final size:76
Alignment explanation
Indices: 73917006--73917204 Score: 281
Period size: 77 Copynumber: 2.6 Consensus size: 76
73916996 GTGTGAGATA
* ** *
73917006 TATATCCGGGCTAATTCCTAAAGGCGTTTGTGCTGGTGTTATATTCAGGTTAAGTCCCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTGTTATA-TCAGGGTAAGTCCCGAAGGCA
73917071 TTCGTGCCGGTGT
64 TTCGTGCCGGTGT
* * *
73917084 TATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGTAAGTCCCGAAGGCAT
1 TATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTGTTATATCAGGGTAAGTCCCGAAGGCAT
*
73917149 TCGTGCTGGTGT
65 TCGTGCCGGTGT
* *
73917161 TATATCTGGGCTAAGTCCCGAAGGCTTTGTGCTGGTATTATATC
1 TATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTGTTATATC
73917205 CGGGCTTAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
76 17 0.16
77 54 0.50
78 37 0.34
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (76 bp):
TATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTGTTATATCAGGGTAAGTCCCGAAGGCATT
CGTGCCGGTGT
Found at i:73917210 original size:38 final size:39
Alignment explanation
Indices: 73917006--73917210 Score: 270
Period size: 39 Copynumber: 5.3 Consensus size: 39
73916996 GTGTGAGATA
* ** * *
73917006 TATATCCGGGCTAATTCCTAAAGGCGTTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
73917045 TATATTCAGGTTAAGTCCCGAAGGCATTCGTGCCGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
73917084 TATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
73917123 TATATCTGGG-TAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
73917161 TATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
73917199 TATATCCGGGCT
1 TATATCCGGGCT
73917211 TAAAGTCTCG
Statistics
Matches: 146, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 60 0.41
39 86 0.59
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:73917231 original size:40 final size:38
Alignment explanation
Indices: 73916973--73917210 Score: 221
Period size: 39 Copynumber: 6.2 Consensus size: 38
73916963 AGGATTTTAA
* * *
73916973 CCGGGCTAAGACCCGCAGGCCTTGTG-TGAG-ATATATAT
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTG-GTAT-TATAT
* ** *
73917011 CCGGGCTAATTCCTAAAGGCGTTTGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTATTATAT
* * * * * *
73917050 TCAGGTTAAGTCCCGAAGGCATTCGTGCCGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTATTATAT
* * *
73917089 CCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTATTATAT
* * *
73917128 CTGGG-TAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTGGTATTATAT
*
73917166 CTGGGCTAAGTCCCGAAGGCTTTGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTATTATAT
73917204 CCGGGCT
1 CCGGGCT
73917211 TAAAGTCTCG
Statistics
Matches: 170, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
38 75 0.44
39 92 0.54
40 3 0.02
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTGGTATTATAT
Found at i:73920909 original size:40 final size:40
Alignment explanation
Indices: 73920809--73920937 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 40
73920799 ACTTAAATTC
** *
73920809 TCGCACACTAAGTGCCAATACATAGCTGAAGCTAT-TACAA
1 TCGCACACTAAGTGCC-ATACATAGCCAAAGCTATCTAGAA
* * *
73920849 TCTCACACACTAAGTGCCATATATAGCCAAAGCTATCTGGAA
1 --TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTAGAA
* * *
73920891 TCGCACACTAAGTGCCATACATAGACAACGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTAGAA
73920931 TCGCACA
1 TCGCACA
73920938 ATATGTGACA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
40 42 0.56
41 15 0.20
42 18 0.24
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCAAAGCTATCTAGAA
Found at i:73922637 original size:28 final size:28
Alignment explanation
Indices: 73922595--73922693 Score: 96
Period size: 28 Copynumber: 3.5 Consensus size: 28
73922585 AATATATGCT
**
73922595 CTATGTGTGTAAGATTAGTAACCGAGCA
1 CTATGTGTGCGAGATTAGTAACCGAGCA
*
73922623 CTATGTGTGCGAGATCAGGTGTAA--G-GCA
1 CTATGTGTGCGAGATTA---GTAACCGAGCA
* *
73922651 CTATGTGTGCGAAATTATTAACCGAGCA
1 CTATGTGTGCGAGATTAGTAACCGAGCA
*
73922679 CTCTGTGTGCGAGAT
1 CTATGTGTGCGAGAT
73922694 CGGGTGTAAG
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 3 0.05
27 1 0.02
28 48 0.84
29 1 0.02
31 4 0.07
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
CTATGTGTGCGAGATTAGTAACCGAGCA
Found at i:73922686 original size:56 final size:56
Alignment explanation
Indices: 73922595--73922715 Score: 181
Period size: 56 Copynumber: 2.2 Consensus size: 56
73922585 AATATATGCT
*
73922595 CTATGTGTGTAAGATTAGTAACCGAGCACTATGTGTGCGAGATCAGGTGTAAGGCA
1 CTATGTGTGGAAGATTAGTAACCGAGCACTATGTGTGCGAGATCAGGTGTAAGGCA
* * *
73922651 CTATGTGTGCGAA-ATTATTAACCGAGCACTCTGTGTGCGAGATCGGGTGTAAGGCA
1 CTATGTGTG-GAAGATTAGTAACCGAGCACTATGTGTGCGAGATCAGGTGTAAGGCA
*
73922707 CTGTGTGTG
1 CTATGTGTG
73922716 TGCAAAATTA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 57 0.97
57 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (56 bp):
CTATGTGTGGAAGATTAGTAACCGAGCACTATGTGTGCGAGATCAGGTGTAAGGCA
Found at i:73922707 original size:28 final size:27
Alignment explanation
Indices: 73922620--73922715 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 27
73922610 TAGTAACCGA
73922620 GCACTATGTGTGCGAGATCAGGTGTAAG
1 GCACTATGTGTGCGAGATC-GGTGTAAG
* **
73922648 GCACTATGTGTGCGAAAT-TAT-TAACCG
1 GCACTATGTGTGCGAGATCGGTGTAA--G
*
73922675 AGCACTCTGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATC-GGTGTAAG
*
73922704 GCACTGTGTGTG
1 GCACTATGTGTG
73922716 TGCAAAATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 44 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCGGTGTAAG
Found at i:73924003 original size:24 final size:24
Alignment explanation
Indices: 73923971--73924026 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
73923961 TTGAAAGTGT
73923971 AGCGCCTGCTCCCGCGCAAGGGAC
1 AGCGCCTGCTCCCGCGCAAGGGAC
73923995 AGCGCCTGCTCCCGCGCAAGGGAC
1 AGCGCCTGCTCCCGCGCAAGGGAC
73924019 AGCGCCTG
1 AGCGCCTG
73924027 TTGAACCTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.16, C:0.41, G:0.34, T:0.09
Consensus pattern (24 bp):
AGCGCCTGCTCCCGCGCAAGGGAC
Found at i:73929328 original size:83 final size:83
Alignment explanation
Indices: 73929189--73929356 Score: 336
Period size: 83 Copynumber: 2.0 Consensus size: 83
73929179 GTTGAGTTTG
73929189 TTTTGATGCTTATAACATGACCCATGAGTTAATTTTTGAGTTTTTGGTATATGAAACATTCGGTT
1 TTTTGATGCTTATAACATGACCCATGAGTTAATTTTTGAGTTTTTGGTATATGAAACATTCGGTT
73929254 ATGTTCTTATATGTTAAA
66 ATGTTCTTATATGTTAAA
73929272 TTTTGATGCTTATAACATGACCCATGAGTTAATTTTTGAGTTTTTGGTATATGAAACATTCGGTT
1 TTTTGATGCTTATAACATGACCCATGAGTTAATTTTTGAGTTTTTGGTATATGAAACATTCGGTT
73929337 ATGTTCTTATATGTTAAA
66 ATGTTCTTATATGTTAAA
73929355 TT
1 TT
73929357 GATGGTGTTT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (83 bp):
TTTTGATGCTTATAACATGACCCATGAGTTAATTTTTGAGTTTTTGGTATATGAAACATTCGGTT
ATGTTCTTATATGTTAAA
Found at i:73930365 original size:28 final size:28
Alignment explanation
Indices: 73930330--73930427 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
73930320 ATGAATATAT
73930330 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* * * **
73930358 GCGCTATGTGTGTGAAAT--TAT-TAACCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
73930385 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
*
73930414 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
73930428 CAAAATTATT
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 43 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.21, C:0.15, G:0.36, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:73931220 original size:2 final size:2
Alignment explanation
Indices: 73931208--73931238 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
73931198 TGTTCAGGTG
*
73931208 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73931239 CTATTATGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:73931811 original size:16 final size:17
Alignment explanation
Indices: 73931790--73931821 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
73931780 AATTTAGCCT
73931790 AAAATTTACA-ATTTGG
1 AAAATTTACACATTTGG
73931806 AAAATTTACACATTTG
1 AAAATTTACACATTTG
73931822 CCGCTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (17 bp):
AAAATTTACACATTTGG
Found at i:73934826 original size:40 final size:40
Alignment explanation
Indices: 73934782--73935005 Score: 193
Period size: 40 Copynumber: 5.5 Consensus size: 40
73934772 TGACAAATCA
*
73934782 GCTATATGTGGCACTTAGTGTGCAATTCGAA-ATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCAATTC-AAGATAGCTTCG
* *
73934822 GCTATATATGGCACTTAGTGTCCAAGATCAAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCAA-TTCAAGATAGCTTCG
* * * *
73934863 GCTATGTATGGCACTTAATGTGCGATTCAAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCAATTCAAGATAGCTTCG
* * * ** * *
73934903 GCTATGTATGACACTTAGTGCGTGATTCGAGATAGCTACG
1 GCTATATATGGCACTTAGTGTGCAATTCAAGATAGCTTCG
* * * *
73934943 GATATATAAT-GCACTTAGTGTGTGAGATT-AAAATAGCTTCA
1 GCTATAT-ATGGCACTTAGTGTG-CA-ATTCAAGATAGCTTCG
* *
73934984 GCTATGTATTGACACTTAGTGT
1 GCTATATA-TGGCACTTAGTGT
73935006 ACAAGAATTC
Statistics
Matches: 148, Mismatches: 29, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
40 87 0.59
41 48 0.32
42 13 0.09
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCAATTCAAGATAGCTTCG
Found at i:73937197 original size:95 final size:95
Alignment explanation
Indices: 73937034--73937228 Score: 381
Period size: 95 Copynumber: 2.1 Consensus size: 95
73937024 TCCTTCGATT
73937034 TTCATTTATTCAAACGAAATTAAACACTTCTCAAGTGTTATCGGATATTCAATCAATTTTACATA
1 TTCATTTATTCAAACGAAATTAAACACTTCTCAAGTGTTATCGGATATTCAATCAATTTTACATA
73937099 TACATGACATTAACATTGATAATTACACAA
66 TACATGACATTAACATTGATAATTACACAA
*
73937129 TTCATTTATTCAAACGGAATTAAACACTTCTCAAGTGTTATCGGATATTCAATCAATTTTACATA
1 TTCATTTATTCAAACGAAATTAAACACTTCTCAAGTGTTATCGGATATTCAATCAATTTTACATA
73937194 TACATGACATTAACATTGATAATTACACAA
66 TACATGACATTAACATTGATAATTACACAA
73937224 TTCAT
1 TTCAT
73937229 ATATACAACA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 99 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (95 bp):
TTCATTTATTCAAACGAAATTAAACACTTCTCAAGTGTTATCGGATATTCAATCAATTTTACATA
TACATGACATTAACATTGATAATTACACAA
Found at i:73939703 original size:13 final size:13
Alignment explanation
Indices: 73939687--73939719 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
73939677 GCACACACGT
73939687 CCGTGTGACCAGC
1 CCGTGTGACCAGC
73939700 CCGTGTGACCAGC
1 CCGTGTGACCAGC
73939713 CCGTGTG
1 CCGTGTG
73939720 CCCTTCGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (13 bp):
CCGTGTGACCAGC
Found at i:73944709 original size:16 final size:16
Alignment explanation
Indices: 73944684--73944715 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73944674 AAGTTCAGGA
*
73944684 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
73944700 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
73944716 GCGTTACATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:73948313 original size:79 final size:80
Alignment explanation
Indices: 73948170--73948377 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
73948160 ACCTTCGGAG
* * ** * * * *
73948170 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
73948234 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
73948249 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
73948311 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
73948328 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
73948378 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:73948322 original size:40 final size:40
Alignment explanation
Indices: 73948270--73948377 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
73948260 TATCACGATT
** *
73948270 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
73948310 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
73948350 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
73948378 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:73956381 original size:39 final size:39
Alignment explanation
Indices: 73956333--73956464 Score: 117
Period size: 39 Copynumber: 3.4 Consensus size: 39
73956323 GGCCTACGGA
*
73956333 CTTAACCCGGATATCACGA-TTGCACAAATGCCTTCGGGT
1 CTTAACCCGGATAT-ACGACTAGCACAAATGCCTTCGGGT
* * * * *
73956372 CTTAGCCCGGATAGAATGACTCGCACGAATGCCTTC-GGT
1 CTTAACCCGGATA-TACGACTAGCACAAATGCCTTCGGGT
* * * *
73956411 CTTAGCCC-GATATAGCCACTAGCACCATTGCCTTCGGGT
1 CTTAACCCGGATATA-CGACTAGCACAAATGCCTTCGGGT
*
73956450 CTTAACCCGGTTATA
1 CTTAACCCGGATATA
73956465 ATTTCCAGCA
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
37 1 0.01
38 19 0.25
39 36 0.48
40 19 0.25
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (39 bp):
CTTAACCCGGATATACGACTAGCACAAATGCCTTCGGGT
Found at i:73956397 original size:78 final size:78
Alignment explanation
Indices: 73956315--73956459 Score: 168
Period size: 78 Copynumber: 1.9 Consensus size: 78
73956305 TATGGTAACC
* * *
73956315 CGCACCAAGGCCTACGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGC
1 CGCACCAAGGCCTACGGACTTAACCC-GATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAAC
73956378 CCGGATAGAATGACT
64 CCGGATAGAATGACT
* * * * * * *
73956393 CGCACGAATGCCTTCGGTCTTAGCCCGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCC
1 CGCACCAAGGCCTACGGACTTAACCCGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAACCC
73956458 GG
66 GG
73956460 TTATAATTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
76 1 0.02
77 7 0.13
78 47 0.85
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (78 bp):
CGCACCAAGGCCTACGGACTTAACCCGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAACCC
GGATAGAATGACT
Found at i:73959042 original size:42 final size:42
Alignment explanation
Indices: 73958995--73959079 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
73958985 GTAGTCAGAG
73958995 TTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAGAGATA
1 TTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAGAGATA
73959037 TTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAGAGATA
1 TTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAGAGATA
73959079 T
1 T
73959080 CATATCTTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (42 bp):
TTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAGAGATA
Found at i:73963658 original size:22 final size:22
Alignment explanation
Indices: 73963633--73963674 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
73963623 CTAAGGGCAT
73963633 TAGCTACCACATTAGCCTTATC
1 TAGCTACCACATTAGCCTTATC
73963655 TAGCTACCACATTAGCCTTA
1 TAGCTACCACATTAGCCTTA
73963675 CCCAGATGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (22 bp):
TAGCTACCACATTAGCCTTATC
Found at i:73966695 original size:20 final size:20
Alignment explanation
Indices: 73966670--73966708 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
73966660 ATTCATTATC
73966670 GTACGTACCTGTACCATCTT
1 GTACGTACCTGTACCATCTT
73966690 GTACGTACCTGTACCATCT
1 GTACGTACCTGTACCATCT
73966709 CGTAGTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (20 bp):
GTACGTACCTGTACCATCTT
Found at i:73972861 original size:42 final size:42
Alignment explanation
Indices: 73972810--73972901 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
73972800 TGGCCCATAG
* ** *
73972810 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
* *
73972852 GCCTATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
73972894 GCCCATTT
1 GCCCATTT
73972902 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:73973110 original size:26 final size:26
Alignment explanation
Indices: 73973032--73973155 Score: 189
Period size: 26 Copynumber: 4.8 Consensus size: 26
73973022 ATCTGAAGGC
**
73973032 AAACTGGGGCA-AAGCCCTTTTCGGT
1 AAACTGGGGCATAAGCCCTTTTCAAT
73973057 AAACTGGGGCA-AAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCTTTTCAAT
* **
73973082 AAACTGGGGCATAAGGCCTTTTCGGT
1 AAACTGGGGCATAAGCCCTTTTCAAT
73973108 AAACTGGGGCATAAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCTTTTCAAT
73973134 AAACTGGGGCATAAGCCCTTTT
1 AAACTGGGGCATAAGCCCTTTT
73973156 GCTCTTCCTC
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 34 0.38
26 56 0.62
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (26 bp):
AAACTGGGGCATAAGCCCTTTTCAAT
Found at i:73973140 original size:52 final size:51
Alignment explanation
Indices: 73973032--73973155 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 51
73973022 ATCTGAAGGC
73973032 AAACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAAT
*
73973082 AAACTGGGGCATAAGGCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAAT
73973134 AAACTGGGGCATAAGCCCTTTT
1 AAACTGGGGCATAAGCCCTTTT
73973156 GCTCTTCCTC
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 11 0.16
51 24 0.34
52 35 0.50
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (51 bp):
AAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAAT
Found at i:73974025 original size:27 final size:27
Alignment explanation
Indices: 73973964--73974029 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
73973954 GGCGTATTCA
*
73973964 TCATTTTATCATACAGGGGTATTACGG
1 TCATTTTATCCTACAGGGGTATTACGG
*
73973991 TCACTTTATCCTACAGGGGCT-TTACGG
1 TCATTTTATCCTACAGGGG-TATTACGG
*
73974018 TCTTTTTA-CCTA
1 TCATTTTATCCTA
73974030 TTAAGGGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.12
27 29 0.85
28 1 0.03
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (27 bp):
TCATTTTATCCTACAGGGGTATTACGG
Found at i:73974111 original size:27 final size:27
Alignment explanation
Indices: 73974058--73974363 Score: 190
Period size: 27 Copynumber: 11.3 Consensus size: 27
73974048 TTTCATCCTA
* * * *
73974058 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
73974085 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
73974112 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* *
73974141 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * *
73974168 CAGGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
73974195 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
73974222 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * * * * *
73974249 TAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
73974275 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* * *
73974302 CGAGCGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * *
73974329 CAAATGTATTTTAGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
73974356 CAAGGGTA
1 CAAGGGTA
73974364 AAACAGTAAT
Statistics
Matches: 218, Mismatches: 52, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
26 23 0.11
27 164 0.75
28 16 0.07
29 15 0.07
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:73974363 original size:107 final size:108
Alignment explanation
Indices: 73974090--73974363 Score: 272
Period size: 107 Copynumber: 2.5 Consensus size: 108
73974080 CAAACCAAGG
* *
73974090 GTATTTTAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTCT
1 GTATTTTGGTAATTTTGTAAACCAATGGTATTT-TAGTAA-TTTTACAAA-TCAAGGGTATTTCT
* ** * *
73974154 GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTAAAAATTGAGG
63 GCAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAATCGAGC
* *** * * *
73974200 GTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTT-TAG
1 GTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTTACAAATC-AAGGGTATTTCT-G
* ***
73974263 CAATTTTACAGA-CTA-GGGTATTTTGGTAATTTTACTGATCGAGC
64 CAATTTTACAAATC-AGGGGTATTTTGGTAATTTTAAAAATCGAGC
*
73974307 GTATTTTGGTAATTTTGTAAACCAAAT-GTATTTTAGTAATTTTATAAATCAAGGGTA
1 GTATTTTGGTAATTTTGTAAACC-AATGGTATTTTAGTAATTTTACAAATCAAGGGTA
73974364 AAACAGTAAT
Statistics
Matches: 132, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
107 71 0.54
108 22 0.17
109 9 0.07
110 30 0.23
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (108 bp):
GTATTTTGGTAATTTTGTAAACCAATGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCTGCA
ATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAATCGAGC
Found at i:73974373 original size:54 final size:54
Alignment explanation
Indices: 73974315--73974435 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
73974305 GCGTATTTTG
* **** *
73974315 GTAATTTTGTAAACCAAATGTATTTTAGTAATTTTATAAATCAAGGGTAAAACA
1 GTAATTTTGTAAACCAAAGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
* * * *
73974369 GTAATTCTGTAAATCAAAGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAACCAAAGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
*
73974423 GTAATTTTATAAA
1 GTAATTTTGTAAA
73974436 TTGAGGGTAC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (54 bp):
GTAATTTTGTAAACCAAAGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACA
Found at i:73974444 original size:27 final size:27
Alignment explanation
Indices: 73974341--73974436 Score: 138
Period size: 27 Copynumber: 3.6 Consensus size: 27
73974331 AATGTATTTT
*
73974341 AGTAATTTTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* *
73974368 AGTAATTCTGTAAATCAAAGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
*
73974395 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* *
73974422 GGTAATTTTATAAAT
1 AGTAATTCTATAAAT
73974437 TGAGGGTACT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (27 bp):
AGTAATTCTATAAATCAAGGGTAAAAC
Found at i:73974452 original size:27 final size:27
Alignment explanation
Indices: 73974421--73974483 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
73974411 GAGGGTAAAA
* *
73974421 CGGTAATTTTATAAATTGAGGGTACTTT
1 CGGTAATTTTACAAATTGAGGGCA-TTT
* *
73974449 -GGTAACTTTACAATTTGAGGGCATTT
1 CGGTAATTTTACAAATTGAGGGCATTT
73974475 CGGTAATTT
1 CGGTAATTT
73974484 GGTAAACTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (27 bp):
CGGTAATTTTACAAATTGAGGGCATTT
Found at i:73976978 original size:26 final size:26
Alignment explanation
Indices: 73976935--73977031 Score: 160
Period size: 26 Copynumber: 3.8 Consensus size: 26
73976925 TCTTTTAATT
73976935 ACTGGGGCA-AAGCCCTTTTCGGTAA
1 ACTGGGGCATAAGCCCTTTTCGGTAA
73976960 ACTGGGGCATAAGCCCTTTTCGGTAA
1 ACTGGGGCATAAGCCCTTTTCGGTAA
**
73976986 ACTGGGGCATAAGCCCTTTTCAATAA
1 ACTGGGGCATAAGCCCTTTTCGGTAA
*
73977012 ACTAGGGCATAAGCCCTTTT
1 ACTGGGGCATAAGCCCTTTT
73977032 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
25 9 0.13
26 59 0.87
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
ACTGGGGCATAAGCCCTTTTCGGTAA
Found at i:73977903 original size:27 final size:28
Alignment explanation
Indices: 73977844--73977918 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 28
73977834 CGTATTCATA
73977844 ATTTT-CCCATACAGGGGTATTACGGTC
1 ATTTTACCCATACAGGGGTATTACGGTC
*
73977871 ACTTTACCC-TACAGGGGCT-TTACGGTC
1 ATTTTACCCATACAGGGG-TATTACGGTC
* * *
73977898 TTTTTACCTAT-TAGGGGTATT
1 ATTTTACCCATACAGGGGTATT
73977919 TTAGTTATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
26 1 0.03
27 33 0.85
28 5 0.13
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (28 bp):
ATTTTACCCATACAGGGGTATTACGGTC
Found at i:73978062 original size:27 final size:27
Alignment explanation
Indices: 73978022--73978260 Score: 216
Period size: 27 Copynumber: 8.9 Consensus size: 27
73978012 AGAAAGTCAA
* * *
73978022 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
*
73978049 GGGTATTTTGGTAATTTTATAAA-TTG
1 GGGTATTTTGGTAATTTTATAAACTAG
* * * *
73978075 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTATAAACTAG
* *
73978103 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACTAG
* *
73978130 GGGTATTTGGGTAATTTTATAAA-TTG
1 GGGTATTTTGGTAATTTTATAAACTAG
* * * *
73978156 AGGGTATTTCGGTAATTTTACAAACCAT
1 -GGGTATTTTGGTAATTTTATAAACTAG
* * *
73978184 GGGTATTTTAGCAATTTTATAGACTA-
1 GGGTATTTTGGTAATTTTATAAACTAG
* * *
73978210 GGGTATTTTGGTAATTTTACTGATCGA-
1 GGGTATTTTGGTAATTTTA-TAAACTAG
*
73978237 GGGTATTTTGGTAATTTTGTAAAC
1 GGGTATTTTGGTAATTTTATAAAC
73978261 CAATGGTAAA
Statistics
Matches: 171, Mismatches: 36, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
26 24 0.14
27 146 0.85
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACTAG
Found at i:73978143 original size:81 final size:81
Alignment explanation
Indices: 73978022--73978253 Score: 317
Period size: 81 Copynumber: 2.9 Consensus size: 81
73978012 AGAAAGTCAA
* * *
73978022 GGGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGG
1 GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGG
73978087 TAATTTCACAAACCA-
66 TAATTTCACAAACCAT
* * *
73978102 GTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTGGGTAATTTTATAAATTGAGGGTATTTCG
1 G-GGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCG
*
73978167 GTAATTTTACAAACCAT
65 GTAATTTCACAAACCAT
* * * * *
73978184 GGGTATTTTAGCAATTTTATAGACTA-GGGTATTTTGGTAATTTTACT-GATCGAGGGTATTTTG
1 GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTA-TAAATTGAGGGTATTTCG
73978247 GTAATTT
65 GTAATTT
73978254 TGTAAACCAA
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
80 39 0.29
81 95 0.70
82 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGG
TAATTTCACAAACCAT
Found at i:73978268 original size:27 final size:27
Alignment explanation
Indices: 73977936--73978268 Score: 215
Period size: 27 Copynumber: 12.3 Consensus size: 27
73977926 TTTCATCCTA
* * * *
73977936 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*** *
73977963 CAAGGGTATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
73977990 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
73978019 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
73978046 TAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
73978073 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
73978100 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * * *
73978127 TAGGGGTATTTGGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * *
73978154 TGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
73978181 CATGGGTATTTTAGCAATTTTATAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
73978207 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
73978234 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
73978261 CAATGGTA
1 CAAGGGTA
73978269 AAACAGTAAT
Statistics
Matches: 239, Mismatches: 58, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
26 23 0.10
27 187 0.78
28 16 0.07
29 13 0.05
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:73978277 original size:27 final size:27
Alignment explanation
Indices: 73978247--73978349 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
73978237 GGGTATTTTG
* * *
73978247 GTAATTTTGTAAACCAATGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACA
73978274 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACA
* * *
73978301 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACA
* *
73978328 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTA
73978350 CTTTGGTAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACA
Found at i:73978357 original size:27 final size:27
Alignment explanation
Indices: 73978301--73978363 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
73978291 GGGTAAAACA
* ****
73978301 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTATTTTG
* *
73978328 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTATTTTG
73978355 GTAATTTTA
1 GTAATTTTA
73978364 CAATTTGAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.35
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTATTTTG
Found at i:73978359 original size:54 final size:54
Alignment explanation
Indices: 73978232--73978360 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 54
73978222 AATTTTACTG
* * * * *
73978232 ATCGAGGGTATTTTGGTAATTTTGTAAACCAATGGTAAAACAGTAATTCTGTAA
1 ATCGAGGGTAATTTGGTAATTCTATAAACCAAGGGTAAAACAGTAATTCTATAA
* **** * * *
73978286 ATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAA
1 ATCGAGGGTAATTTGGTAATTCTATAAACCAAGGGTAAAACAGTAATTCTATAA
*
73978340 ATCGAGGGTACTTTGGTAATT
1 ATCGAGGGTAATTTGGTAATT
73978361 TTACAATTTG
Statistics
Matches: 56, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (54 bp):
ATCGAGGGTAATTTGGTAATTCTATAAACCAAGGGTAAAACAGTAATTCTATAA
Found at i:73981204 original size:27 final size:28
Alignment explanation
Indices: 73981174--73981243 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
73981164 ATAGTGAATC
*
73981174 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
73981201 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
73981229 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73981244 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:73989061 original size:27 final size:28
Alignment explanation
Indices: 73989031--73989100 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
73989021 ATAGTGAATC
*
73989031 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
73989058 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
73989086 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73989101 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:73993861 original size:40 final size:40
Alignment explanation
Indices: 73993816--73993983 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
73993806 CGGAATATAA
*
73993816 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
73993856 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73993896 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
73993936 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
73993976 CCGGATAT
1 CCGGATAT
73993984 CATTCAATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 104 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73993966 original size:80 final size:80
Alignment explanation
Indices: 73993832--73993983 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
73993822 ATAACCATGT
* *
73993832 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
73993897 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
73993912 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
73993975 CCCGGATAT
64 CCCGGATAT
73993984 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:73999710 original size:40 final size:40
Alignment explanation
Indices: 73999666--73999846 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
73999656 GCTCGATTGT
* * *
73999666 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGATT-TAGTAACTCGCACAAATGC
73999706 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
73999746 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
73999786 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
73999827 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACATAGCCCGGAT
73999847 ACATTCGAAT
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 87 0.74
41 27 0.23
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:73999764 original size:80 final size:81
Alignment explanation
Indices: 73999666--73999844 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 81
73999656 GCTCGATTGT
* * * *
73999666 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAG
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAG
* *
73999730 TAAC-TCGCACAAATGC
65 TAACTTAGCACAAAAGC
* * *
73999746 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
*
73999811 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
73999827 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
73999845 ATACATTCGA
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 58 0.67
81 28 0.33
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGT
AACTTAGCACAAAAGC
Found at i:74002496 original size:16 final size:15
Alignment explanation
Indices: 74002477--74002508 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
74002467 TTCCATCATT
74002477 TTTTTTTCTTTTCTCC
1 TTTTTTTCTTTT-TCC
74002493 TTTTTTTCTTTTTCC
1 TTTTTTTCTTTTTCC
74002508 T
1 T
74002509 ACCCTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTTCTTTTTCC
Found at i:74004650 original size:39 final size:40
Alignment explanation
Indices: 74004604--74004742 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
74004594 GGACTAGGAT
*
74004604 CCGAAGGCATTCGTGCGAGTTAATAAATCTGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTAATAAACCTGGGCTAAGTC
* * * *
74004643 CCGAAGGCATTTGTGCAAGTTACTAAACCTGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCTGGGCTAAGTC
* * * *
74004683 CCAAAGGCATTCGTGCGAGTCACTATAACC-GGGCTTCA-TC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCTGGGC-TAAGTC
* *
74004723 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
74004743 CGTTATATCC
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 33 0.40
40 44 0.53
41 6 0.07
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCTGGGCTAAGTC
Found at i:74004694 original size:79 final size:80
Alignment explanation
Indices: 74004551--74004702 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 80
74004541 TCGAATGATG
* * *
74004551 TCTGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCTGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCAAAGGCATTC
74004616 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
74004631 TCTGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTA-AACCTGGGTTAAG-TCCCAAAGGCA
1 TCTGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACC-GGACTAAGAT-CCAAAGGCA
74004692 TTCGTGCGAGT
63 TTCGTGCGAGT
74004703 CACTATAACC
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
78 4 0.06
79 41 0.65
80 18 0.29
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCTGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCAAAGGCATTC
GTGCGAGTTAATAAA
Found at i:74006665 original size:40 final size:40
Alignment explanation
Indices: 74006538--74006667 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
74006528 ATGCTGGAAA
* *
74006538 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
74006578 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
74006618 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
74006658 TTATATCCGG
1 TTATATCCGG
74006668 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:74010123 original size:27 final size:26
Alignment explanation
Indices: 74010076--74010133 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
74010066 ATCAATATAA
**
74010076 TAGAAAAAAAAAGTTCGATATC-ATT
1 TAGAAAAAAAAAGTTAAATATCAATT
*
74010101 CTAGAAAAAAAAATTATAAATATCAATT
1 -TAGAAAAAAAAAGT-TAAATATCAATT
74010129 TAGAA
1 TAGAA
74010134 TAAATGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.48
27 11 0.41
28 3 0.11
ACGTcount: A:0.57, C:0.07, G:0.09, T:0.28
Consensus pattern (26 bp):
TAGAAAAAAAAAGTTAAATATCAATT
Found at i:74011329 original size:66 final size:66
Alignment explanation
Indices: 74011225--74011349 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
74011215 GGTTCCCTTA
* * *
74011225 GTATTGTAATTATGGGTTTGAATTGAATTTCAAGGCAAGAATATACCTCATCTTATTTTTCCCTC
1 GTATTGTAATTACGGGTTTGAATTGAATTTCAAAGCAAGAATATACCTCATCTCATTTTTCCCTC
74011290 G
66 G
* * * *
74011291 GTATTGTACTTACGTGTTTGAATTGAATTGT-AAAGCAAGAATATGCTTCATCTCATTTT
1 GTATTGTAATTACGGGTTTGAATTGAATT-TCAAAGCAAGAATATACCTCATCTCATTTT
74011350 AAGCTCATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 50 0.98
67 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (66 bp):
GTATTGTAATTACGGGTTTGAATTGAATTTCAAAGCAAGAATATACCTCATCTCATTTTTCCCTC
G
Found at i:74014624 original size:18 final size:20
Alignment explanation
Indices: 74014587--74014625 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
74014577 TGTGTGATGC
*
74014587 ACAAATTTATTATATTAATA
1 ACAAATATATTATATTAATA
74014607 ACAAATATA-TAT-TTAATA
1 ACAAATATATTATATTAATA
74014625 A
1 A
74014626 ATTAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 3 0.17
20 8 0.44
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
ACAAATATATTATATTAATA
Found at i:74015010 original size:3 final size:3
Alignment explanation
Indices: 74015002--74015027 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
74014992 TGAATCAAGC
74015002 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
74015028 TAAATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:74015371 original size:18 final size:18
Alignment explanation
Indices: 74015348--74015386 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
74015338 GATGCAATAT
74015348 AAATT-ATATAAAATTTTA
1 AAATTAATATAAAA-TTTA
74015366 AAATTAATATAAAATTTA
1 AAATTAATATAAAATTTA
74015384 AAA
1 AAA
74015387 GAGTAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATTAATATAAAATTTA
Found at i:74020370 original size:23 final size:22
Alignment explanation
Indices: 74020344--74020393 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
74020334 TCTTTTTAAG
74020344 AAAACA-TCATTTAAGAACATAAT
1 AAAACATTC-TTTAA-AACATAAT
*
74020367 AAAAAATTCTTTAAAACATAAT
1 AAAACATTCTTTAAAACATAAT
*
74020389 TAAAC
1 AAAAC
74020394 CTTTAAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 11 0.48
23 10 0.43
24 2 0.09
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (22 bp):
AAAACATTCTTTAAAACATAAT
Found at i:74024048 original size:40 final size:40
Alignment explanation
Indices: 74024000--74024134 Score: 182
Period size: 40 Copynumber: 3.4 Consensus size: 40
74023990 GCTTTCGGGT
*
74024000 CTTAGCCCGGATATAGTCACTAGCATAAATGCCTTCAGGA
1 CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGA
*
74024040 CTTAGCCCGGATATAGTTACTAGCACAAATGCCTTCA-GA
1 CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGA
* * * * *
74024079 TCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGA
1 -CTTAGCCCGGATATAGTCAC-TAGCACAAATGCCTTCAGGA
74024121 CTTAGCCCGGATAT
1 CTTAGCCCGGATAT
74024135 CATTCGAGTA
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 51 0.62
41 27 0.33
42 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGA
Found at i:74043171 original size:17 final size:17
Alignment explanation
Indices: 74043149--74043188 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
74043139 ATATCTTAGG
74043149 AGTTCCTACTGGGATTT
1 AGTTCCTACTGGGATTT
74043166 AGTTCCTACTGGGATTT
1 AGTTCCTACTGGGATTT
74043183 AGTTCC
1 AGTTCC
74043189 ATTAATGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (17 bp):
AGTTCCTACTGGGATTT
Found at i:74051865 original size:2 final size:2
Alignment explanation
Indices: 74051858--74051892 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
74051848 GAGACTAGTC
74051858 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74051893 CATGTCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:74053925 original size:30 final size:30
Alignment explanation
Indices: 74053889--74053949 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 30
74053879 TCCTTAACTC
74053889 AAACTTTGGCAATATTATA-A-TTTTGCCCCT
1 AAACTTTGGC-ATATT-TACACTTTTGCCCCT
*
74053919 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCATATTTACACTTTTGCCCCT
74053949 A
1 A
74053950 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 2 0.07
29 6 0.21
30 20 0.71
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (30 bp):
AAACTTTGGCATATTTACACTTTTGCCCCT
Found at i:74058999 original size:27 final size:27
Alignment explanation
Indices: 74058953--74059008 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
74058943 TAAGCATTTT
* **
74058953 ATGCTTAGTAAGTTTGTATAATGGAAA
1 ATGCTTAGTAACTTCATATAATGGAAA
74058980 ATGCTTAGTAACTTCATATAATGGAAA
1 ATGCTTAGTAACTTCATATAATGGAAA
74059007 AT
1 AT
74059009 AAACTTACCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (27 bp):
ATGCTTAGTAACTTCATATAATGGAAA
Found at i:74062538 original size:21 final size:21
Alignment explanation
Indices: 74062492--74062536 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
74062482 GTATTTTGAT
*
74062492 GTTTAATGATAGATTATAAAA
1 GTTTGATGATAGATTATAAAA
*
74062513 GTTTGATGATAG-TTATAGAA
1 GTTTGATGATAGATTATAAAA
74062533 GTTT
1 GTTT
74062537 TGTTAAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (21 bp):
GTTTGATGATAGATTATAAAA
Found at i:74064578 original size:29 final size:29
Alignment explanation
Indices: 74064545--74064603 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
74064535 GTCACACGGG
* *
74064545 TGTGTGTCCCCTGTTTTATGCAAAAATTT
1 TGTGTGTCCCCTATTTTATGAAAAAATTT
74064574 TGTGTGTCCCCTATTTTATGAAAAAATTT
1 TGTGTGTCCCCTATTTTATGAAAAAATTT
74064603 T
1 T
74064604 CTAAGAGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (29 bp):
TGTGTGTCCCCTATTTTATGAAAAAATTT
Found at i:74067266 original size:13 final size:13
Alignment explanation
Indices: 74067248--74067272 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74067238 TCCCATACTT
74067248 ACACACATTATAG
1 ACACACATTATAG
74067261 ACACACATTATA
1 ACACACATTATA
74067273 ACATCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (13 bp):
ACACACATTATAG
Found at i:74068741 original size:26 final size:26
Alignment explanation
Indices: 74068709--74068791 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
74068699 AGCTCTCTGG
74068709 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * *
74068735 TACACAT-G-CGACCTATCAATCT-G--G
1 TACACATAGTAG-CCT-GCACT-TAGTAC
74068759 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
74068785 TACACAT
1 TACACAT
74068792 GTGACTTAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 16
0.63 0.12 0.25
Matches are distributed among these distances:
23 1 0.02
24 12 0.29
25 8 0.20
26 19 0.46
27 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:74068763 original size:50 final size:50
Alignment explanation
Indices: 74068704--74068947 Score: 319
Period size: 50 Copynumber: 4.9 Consensus size: 50
74068694 ACCGAAGCTC
*
74068704 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
74068754 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * ** *
74068804 TCTGATAGACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* **
74068856 -CAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
74068905 TCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
74068948 TTACAACGGA
Statistics
Matches: 165, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 3 0.02
50 123 0.75
51 38 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:74068891 original size:101 final size:100
Alignment explanation
Indices: 74068708--74068947 Score: 322
Period size: 101 Copynumber: 2.4 Consensus size: 100
74068698 AAGCTCTCTG
* * ** *
74068708 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGCC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACAAATCAATCAGGTACACATAGTAGCC
* *
74068773 TGCACTTAGTACTACACATGTGACTTAACCATCT-
66 TGCACTTAGTACTACACATGTGACCTAACAATCTA
* * **
74068807 GATAGACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAA-CAGGTATGCATAGTA
1 G-TACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CAAA-TCAATCAGGTACACATAGTA
*
74068871 GCCTGCACTTAGTACTACACATGTGACCTATCAATCTA
63 GCCTGCACTTAGTACTACACATGTGACCTAACAATCTA
*
74068909 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGAC
74068948 TTACAACGGA
Statistics
Matches: 123, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
99 1 0.01
100 35 0.28
101 83 0.67
102 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (100 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACAAATCAATCAGGTACACATAGTAGCC
TGCACTTAGTACTACACATGTGACCTAACAATCTA
Found at i:74069108 original size:13 final size:14
Alignment explanation
Indices: 74069090--74069119 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
74069080 GCCACATCTC
74069090 AAATAATAACA-AA
1 AAATAATAACATAA
74069103 AAATAATAACATAA
1 AAATAATAACATAA
74069117 AAA
1 AAA
74069120 GAATCGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (14 bp):
AAATAATAACATAA
Found at i:74069323 original size:19 final size:20
Alignment explanation
Indices: 74069295--74069341 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74069285 AAGAACATGT
74069295 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
74069316 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
74069335 TATATAT
1 TATATAT
74069342 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:74071941 original size:15 final size:15
Alignment explanation
Indices: 74071921--74071959 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
74071911 AACCAGGATC
74071921 TCCAAGAT-AGAGAAA
1 TCCAAGATAAG-GAAA
74071936 TCCAAGATAAGGAAA
1 TCCAAGATAAGGAAA
74071951 TCCAAGATA
1 TCCAAGATA
74071960 CAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAGGAAA
Found at i:74075356 original size:50 final size:50
Alignment explanation
Indices: 74075133--74075520 Score: 370
Period size: 50 Copynumber: 7.7 Consensus size: 50
74075123 ACCAAAGCTC
* * * *
74075133 TCTGGTACGCATAGTAACCTGCACTTAGTACTAGACATGTGATCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
** * * * *
74075183 TCTGGTACATGTAGTAGCCTGCA-TTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
** * * * ** *
74075232 TCTTATACCCATAATAGCATGCACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * *
74075284 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
74075333 TCTGGTACACATAGTAGCCTGCACTTAGTACTAAACACGTG-CCTTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-TATCAA
* * * * ** *
74075383 TCTGATACACGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * *
74075435 T-GGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* *
74075484 TCTGGTACACGTAGTAGCTTGCACTTAGTACTACACA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
74075521 CGTCACTCAC
Statistics
Matches: 270, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
49 45 0.17
50 149 0.55
51 71 0.26
52 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:74075449 original size:151 final size:151
Alignment explanation
Indices: 74075136--74075523 Score: 589
Period size: 151 Copynumber: 2.6 Consensus size: 151
74075126 AAAGCTCTCT
* * * * *
74075136 GGTACGCATAGTAACCTGCACTTAGTACTAGACATGTGATCTATCAATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
74075201 CTGCA-TTAGTACTACACACGTGACTTAACCATCTTATACCCATAATAGCATGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACATAATAACATGCACTTAGTACTA
*
74075265 CACATGTGATCAAAGTTAACG
131 CACACGTGATCAAAGTTAACG
*
74075286 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
74075351 CTGCACTTAGTACTAAACACGTGCCTTAACAATCTGATACACGTAGTAACCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACATAATAACATGCACTTAGTACTA
* *
74075416 CACACGTGATCGAAGTTAATG
131 CACACGTGATCAAAGTTAACG
*
74075437 GGTACGCGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
74075502 TTGCACTTAGTACTACACACGT
66 CTGCACTTAGTACTACACACGT
74075524 CACTCACAAC
Statistics
Matches: 215, Mismatches: 22, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
150 64 0.30
151 151 0.70
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACATAATAACATGCACTTAGTACTA
CACACGTGATCAAAGTTAACG
Found at i:74075523 original size:101 final size:100
Alignment explanation
Indices: 74075133--74075523 Score: 405
Period size: 101 Copynumber: 3.9 Consensus size: 100
74075123 ACCAAAGCTC
* * * *
74075133 TCTGGTACGCATAGTAACCTGCACTTAGTACTAGACATGTGATCTATCAATCTGGTACATGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
* *
74075198 AGCCTGCA-TTAGTACTACACACGTGACTTAA-CCA
66 AGCCTGCACTTAGTACTACACACGTGAC-CAATCAA
** * * * ** * * * *
74075232 TCTTATACCCATAATAGCATGCACTTAGTACTACACATGTGATCAAAGTTAA-CGGGTACGCATA
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACGTA
* * *
74075296 GTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
64 GTAGCCTGCACTTAGTACTACACACGTGACCAATCAA
* * * * *
74075333 TCTGGTACACATAGTAGCCTGCACTTAGTACTAAACACGTG-CCTTAACAATCTGATACACGTAG
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC-TATCAATCTGGTACACGTAG
* * *
74075397 TAACCTGCACTTAGTACTACACACGTGATCGAAGTTAA
65 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCAA
* * *
74075435 T-GGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
*
74075499 AGCTTGCACTTAGTACTACACACGT
66 AGCCTGCACTTAGTACTACACACGT
74075524 CACTCACAAC
Statistics
Matches: 232, Mismatches: 51, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
99 38 0.16
100 55 0.24
101 133 0.57
102 6 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGT
AGCCTGCACTTAGTACTACACACGTGACCAATCAA
Found at i:74078068 original size:46 final size:46
Alignment explanation
Indices: 74077959--74078130 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
74077949 TCAACAAGCT
* * * * * *
74077959 GATGCCATGTCTCAGACAGGTCTTACACTAGCTTATCTATCTCGAGGTT
1 GATG-CATGTCCCAGACATGTCTTACACTAGC-TCTC-ATCTCAATGTC
*
74078008 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTC
* *
74078054 GATGCATGTTCCAGACATGTCTTACACTGGCTCTCA--T-AATGTGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAA--T-GTC
74078100 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
74078131 ACACATATCA
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 1 0.01
46 72 0.67
47 3 0.03
48 25 0.23
49 4 0.04
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTC
Found at i:74080687 original size:27 final size:27
Alignment explanation
Indices: 74080619--74080689 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
74080609 CGACTTGTAA
* *
74080619 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
74080646 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
74080673 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
74080690 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:74080696 original size:27 final size:27
Alignment explanation
Indices: 74080673--74080796 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
74080663 CAATTTACAG
74080673 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
74080700 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
74080727 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
**
74080754 AATTACCAAAATACCAATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
74080781 AATTACTAAAATACCC
1 AATTACCAAAATACCC
74080797 CTGTAGGGTA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 81 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:74080715 original size:54 final size:53
Alignment explanation
Indices: 74080657--74080768 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
74080647 ATTACCGTTT
74080657 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
74080711 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
74080765 TACC
1 TACC
74080769 AATGGTTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
53 2 0.04
54 39 0.78
55 7 0.14
56 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:74080775 original size:54 final size:54
Alignment explanation
Indices: 74080673--74080796 Score: 194
Period size: 54 Copynumber: 2.3 Consensus size: 54
74080663 CAATTTACAG
* ** *
74080673 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
* *
74080727 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
74080781 AATTACTAAAATACCC
1 AATTACTAAAATACCC
74080797 CTGTAGGGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCAATGGTTTGAAA
Found at i:74080809 original size:27 final size:27
Alignment explanation
Indices: 74080779--74080840 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
74080769 AATGGTTTGA
74080779 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
74080806 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
74080833 AAAATTAC
1 AAAATTAC
74080841 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:74080809 original size:54 final size:54
Alignment explanation
Indices: 74080673--74080822 Score: 151
Period size: 54 Copynumber: 2.8 Consensus size: 54
74080663 CAATTTACAG
* ** * ** *
74080673 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
74080727 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCAATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
* **
74080781 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACC
74080823 CTTGTGGGGT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 79 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCAATGGTTTGAAA
Found at i:74080825 original size:81 final size:81
Alignment explanation
Indices: 74080673--74080825 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
74080663 CAATTTACAG
** **
74080673 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
74080738 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
74080754 AATTACCAAAATACCAATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCAATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
74080817 AATACCCTT
64 AATACCCTT
74080826 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 60 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCAATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:74081489 original size:28 final size:28
Alignment explanation
Indices: 74081456--74081552 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
74081446 GCGTAGATCA
74081456 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74081484 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74081512 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
74081540 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
74081553 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Done.