Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 249 of 328
Found at i:74084827 original size:27 final size:27
Alignment explanation
Indices: 74084759--74084829 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
74084749 CGACTTGTAA
* *
74084759 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
74084786 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
74084813 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
74084830 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:74084855 original size:54 final size:53
Alignment explanation
Indices: 74084797--74084936 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
74084787 ATTACCGTTT
74084797 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
74084851 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
* *** * *
74084905 TACCATGGTTTGAAAAATTACTAAAATACCCT
1 TACCCTCAATTGTAAAATTACCAAAATACCCT
74084937 GTAGGGTAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 28 0.37
54 39 0.51
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:74084922 original size:26 final size:27
Alignment explanation
Indices: 74084813--74084936 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
74084803 CAATTTACAG
74084813 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
74084840 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
74084867 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
74084894 AATTACCAAAATA-CCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
74084920 AATTACTAAAATACCCT
1 AATTACCAAAATACCCT
74084937 GTAGGGTAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 21 0.26
27 61 0.74
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:74084947 original size:26 final size:27
Alignment explanation
Indices: 74084863--74084978 Score: 103
Period size: 26 Copynumber: 4.4 Consensus size: 27
74084853 CCCCTGGTTT
**
74084863 GTAAAATTACTAAAATACCCTTTGT-TT
1 GTAAAATTACTAAAATACCC-TTGTAGG
* * * * **
74084890 ATAAAATTACCAAAATACCATGGT-TT
1 GTAAAATTACTAAAATACCCTTGTAGG
*
74084916 GAAAAATTACTAAAATACCC-TGTAGG
1 GTAAAATTACTAAAATACCCTTGTAGG
* *
74084942 GTAAAATTACTGAAATACCCTTGTGGG
1 GTAAAATTACTAAAATACCCTTGTAGG
74084969 GTAAAATTAC
1 GTAAAATTAC
74084979 CATTTTGCCC
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
25 2 0.03
26 39 0.53
27 32 0.44
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCTTGTAGG
Found at i:74085631 original size:28 final size:28
Alignment explanation
Indices: 74085598--74085694 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
74085588 GCGTAGATCA
74085598 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74085626 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74085654 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
74085682 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
74085695 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:74091900 original size:40 final size:40
Alignment explanation
Indices: 74091855--74092021 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74091845 CGGAATATAA
74091855 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74091895 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
74091935 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74091975 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74092014 CCGGATAT
1 CCGGATAT
74092022 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74092005 original size:80 final size:79
Alignment explanation
Indices: 74091855--74092021 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
74091845 CGGAATATAA
* *
74091855 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
74091920 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
74091935 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
74091997 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
74092014 CCGGATAT
1 CCGGATAT
74092022 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:74092869 original size:17 final size:19
Alignment explanation
Indices: 74092846--74092891 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74092836 AAGAAGCATG
74092846 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74092864 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74092882 AATCATGCTC
1 AATCATGCTC
74092892 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74099906 original size:40 final size:40
Alignment explanation
Indices: 74099861--74100027 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74099851 CGGAATATAA
74099861 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74099901 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
74099941 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74099981 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74100020 CCGGATAT
1 CCGGATAT
74100028 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74100011 original size:80 final size:79
Alignment explanation
Indices: 74099861--74100027 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
74099851 CGGAATATAA
* *
74099861 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
74099926 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
74099941 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
74100003 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
74100020 CCGGATAT
1 CCGGATAT
74100028 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:74100874 original size:17 final size:19
Alignment explanation
Indices: 74100851--74100896 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74100841 AAGAAGCATG
74100851 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74100869 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74100887 AATCATGCTC
1 AATCATGCTC
74100897 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74109037 original size:40 final size:40
Alignment explanation
Indices: 74108992--74109158 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74108982 CGGAATATAA
74108992 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74109032 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
74109072 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74109112 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74109151 CCGGATAT
1 CCGGATAT
74109159 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74109142 original size:80 final size:79
Alignment explanation
Indices: 74108992--74109158 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
74108982 CGGAATATAA
* *
74108992 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
74109057 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
74109072 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
74109134 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
74109151 CCGGATAT
1 CCGGATAT
74109159 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:74110006 original size:17 final size:19
Alignment explanation
Indices: 74109983--74110028 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74109973 AAGAAGCATG
74109983 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74110001 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74110019 AATCATGCTC
1 AATCATGCTC
74110029 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74111482 original size:45 final size:45
Alignment explanation
Indices: 74111394--74111507 Score: 128
Period size: 45 Copynumber: 2.6 Consensus size: 45
74111384 TCGGCATTTC
* *
74111394 GCCTGTTAGGCTCG-AGGCCCG-ATATCAGTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGACATTATA
74111437 GCCTGCTAGGCTCGAAGGCCCGAATAGT-A-TCTCACCGACATTATA
1 GCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT-TCACCGACATTATA
** * *
74111482 GTTTGCTAAGCTCAAAGGCCCGAATA
1 GCCTGCTAGGCTCGAAGGCCCGAATA
74111508 ATCAAGTCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
43 13 0.21
44 8 0.13
45 39 0.64
46 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGACATTATA
Found at i:74111883 original size:43 final size:43
Alignment explanation
Indices: 74111835--74111989 Score: 274
Period size: 43 Copynumber: 3.6 Consensus size: 43
74111825 CCAGCATTAT
74111835 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
74111878 GCCTGCTAGGCATGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
74111921 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
74111964 GCCTGCTAGGCACAAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
74111990 TAATACCAGC
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:74112036 original size:38 final size:37
Alignment explanation
Indices: 74111987--74112060 Score: 112
Period size: 38 Copynumber: 2.0 Consensus size: 37
74111977 AAAGGCCCGA
* * *
74111987 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTGC-GGATTTAACCCAG
74112025 ATATAATACCAGCACGAAGCCTGCGGATTTAACCCA
1 ATATAATACCAGCACGAAGCCTGCGGATTTAACCCA
74112061 AATACACATC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 11 0.33
38 22 0.67
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (37 bp):
ATATAATACCAGCACGAAGCCTGCGGATTTAACCCAG
Found at i:74115094 original size:20 final size:21
Alignment explanation
Indices: 74115046--74115094 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
74115036 TTACTCATGT
*
74115046 TTTCCCTCCTTTGTTCCCTTA
1 TTTCCCTTCTTTGTTCCCTTA
* *
74115067 TTTTCCTTCTTT-TTCCCTTG
1 TTTCCCTTCTTTGTTCCCTTA
74115087 TTTCCCTT
1 TTTCCCTT
74115095 GTTTCCTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.02, C:0.35, G:0.04, T:0.59
Consensus pattern (21 bp):
TTTCCCTTCTTTGTTCCCTTA
Found at i:74115111 original size:28 final size:28
Alignment explanation
Indices: 74115045--74115111 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
74115035 TTTACTCATG
* * *
74115045 TTTTCCCTCCTTTGTTCCCTTATTTTCC
1 TTTTTCCTCCCTTGTTCCCTTAGTTTCC
*
74115073 TTCTTT-TTCCCTTGTTTCCCTT-GTTTCC
1 TT-TTTCCTCCCTTG-TTCCCTTAGTTTCC
74115101 TTTTTCCTCCC
1 TTTTTCCTCCC
74115112 ATTTGACTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
27 3 0.10
28 19 0.61
29 9 0.29
ACGTcount: A:0.01, C:0.36, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTTCCTCCCTTGTTCCCTTAGTTTCC
Found at i:74116480 original size:40 final size:40
Alignment explanation
Indices: 74116424--74116563 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 40
74116414 CTGCAACACC
* *
74116424 GGTGGCTTGTCTACAATACTGACAGCTTGTCTGTAATATT
1 GGTGGCTTGTCCACAATACTGACAGCTTGTCAGTAATATT
* * * *
74116464 GGTGGCTTGTCCACAATATTGGCAGCTTGTCCA-TAACACT
1 GGTGGCTTGTCCACAATACTGACAGCTTGT-CAGTAATATT
* * * * * * *
74116504 AGTGGCTTGTCCATAATCCT-AGCAGTTTATCAGCATTATT
1 GGTGGCTTGTCCACAATACTGA-CAGCTTGTCAGTAATATT
74116544 GGTGGCTTGTCCACAATACT
1 GGTGGCTTGTCCACAATACT
74116564 AGCAATTTAT
Statistics
Matches: 77, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
39 2 0.03
40 74 0.96
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (40 bp):
GGTGGCTTGTCCACAATACTGACAGCTTGTCAGTAATATT
Found at i:74116481 original size:20 final size:20
Alignment explanation
Indices: 74116458--74116516 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
74116448 GCTTGTCTGT
74116458 AATATTGGTGGCTTGTCCAC
1 AATATTGGTGGCTTGTCCAC
** *
74116478 AATATTGGCAGCTTGTCCAT
1 AATATTGGTGGCTTGTCCAC
* * *
74116498 AACACTAGTGGCTTGTCCA
1 AATATTGGTGGCTTGTCCA
74116517 TAATCCTAGC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (20 bp):
AATATTGGTGGCTTGTCCAC
Found at i:74116566 original size:40 final size:40
Alignment explanation
Indices: 74116505--74116604 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
74116495 CATAACACTA
* * * *
74116505 GTGGCTTGTCCATAATCCTAGCAGTTTATCAGCATTATTG
1 GTGGCTTGTCCACAATACTAGCAATTTATCAGCAATATTG
*
74116545 GTGGCTTGTCCACAATACTAGCAATTTATCTGCAATATTG
1 GTGGCTTGTCCACAATACTAGCAATTTATCAGCAATATTG
* * *
74116585 ATGGGTTTTCCACAA-ACTAG
1 GTGGCTTGTCCACAATACTAG
74116605 TGTGTTATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 5 0.10
40 47 0.90
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (40 bp):
GTGGCTTGTCCACAATACTAGCAATTTATCAGCAATATTG
Found at i:74117287 original size:27 final size:27
Alignment explanation
Indices: 74117248--74117652 Score: 298
Period size: 27 Copynumber: 14.9 Consensus size: 27
74117238 TAAATTTTAA
*
74117248 AAAATGACT-ATTTTGCCCTTATGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
*
74117275 AAAATGATGATTTTGCCCTTATGTGAT
1 AAAATGATGATTTTGCCCTTATGTGGT
** *
74117302 AAAATGACAATTTTGCCCTTATGTGGC
1 AAAATGATGATTTTGCCCTTATGTGGT
*
74117329 AAAATGACTG-TTTT-CCC-T-TGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
* *
74117353 AAAATGACGATTTTTCCCTTATGTGGT
1 AAAATGATGATTTTGCCCTTATGTGGT
* * *
74117380 AAAATGA-CAGTTTTGCCTTTATGTGGC
1 AAAATGATGA-TTTTGCCCTTATGTGGT
*
74117407 AAAATGATTG-TTTTGCCCTTATGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
* * * * **
74117434 AAAATAACGATTTTTCCATTATGTGAC
1 AAAATGATGATTTTGCCCTTATGTGGT
*
74117461 AAAATGACT-ATTTTGCCC-T-TGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
* *
74117486 AAAATGACAGGTTTT-CCCTTATGTGGT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
* *
74117513 AAAATGACGATTTTGCCCTTATATGGT
1 AAAATGATGATTTTGCCCTTATGTGGT
*
74117540 AAAATGACGGAATAACGGTTTTGCCCTTATGTGGT
1 AAAAT----G-AT---GATTTTGCCCTTATGTGGT
* **
74117575 -AAATGACGATTTTGCCCTTATAAGGT
1 AAAATGATGATTTTGCCCTTATGTGGT
74117601 AAAATGACT-ATTTTGCCCTTATGTGGT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
** *
74117628 AGGATAACTG-TTTTGCCCTTATGTG
1 AAAATGA-TGATTTTGCCCTTATGTG
74117653 ATGTATGTTT
Statistics
Matches: 302, Mismatches: 50, Indels: 52
0.75 0.12 0.13
Matches are distributed among these distances:
23 1 0.00
24 15 0.05
25 19 0.06
26 34 0.11
27 208 0.69
29 1 0.00
30 1 0.00
31 1 0.00
32 1 0.00
34 4 0.01
35 17 0.06
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (27 bp):
AAAATGATGATTTTGCCCTTATGTGGT
Found at i:74117306 original size:54 final size:54
Alignment explanation
Indices: 74117248--74117652 Score: 344
Period size: 54 Copynumber: 7.5 Consensus size: 54
74117238 TAAATTTTAA
* *
74117248 AAAATGACTATTTTGCCCTTATGTGTTAAAATGATGATTTTGCCCTTATGTGAT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGATGATTTTGCCCTTATGTGGT
* * *
74117302 AAAATGACAATTTTGCCCTTATGTGGCAAAATGACTG-TTTT-CCC-T-TGTGTT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGA-TGATTTTGCCCTTATGTGGT
* * * * *
74117353 AAAATGACGATTTTTCCCTTATGTGGTAAAATGA-CAGTTTTGCCTTTATGTGGC
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGATGA-TTTTGCCCTTATGTGGT
* * * * * * * **
74117407 AAAATGATTGTTTTGCCCTTATGTGTTAAAATAACGATTTTTCCATTATGTGAC
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGATGATTTTGCCCTTATGTGGT
* * *
74117461 AAAATGACTATTTTGCCC-T-TGTGTTAAAATGACAGGTTTT-CCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGA-TGATTTTGCCCTTATGTGGT
* * *
74117513 AAAATGACGATTTTGCCCTTATATGGTAAAATGACGGAATAACGGTTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAAT----G-AT---GATTTTGCCCTTATGTGGT
* **
74117575 -AAATGACGATTTTGCCCTTATAAGGTAAAATGACT-ATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGTAAAATGA-TGATTTTGCCCTTATGTGGT
** * *
74117628 AGGATAACTGTTTTGCCCTTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
74117653 ATGTATGTTT
Statistics
Matches: 288, Mismatches: 42, Indels: 42
0.77 0.11 0.11
Matches are distributed among these distances:
51 40 0.14
52 41 0.14
53 28 0.10
54 123 0.43
55 3 0.01
56 1 0.00
57 2 0.01
58 1 0.00
59 1 0.00
61 36 0.12
62 12 0.04
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (54 bp):
AAAATGACTATTTTGCCCTTATGTGGTAAAATGATGATTTTGCCCTTATGTGGT
Found at i:74117425 original size:132 final size:133
Alignment explanation
Indices: 74117248--74117546 Score: 419
Period size: 132 Copynumber: 2.3 Consensus size: 133
74117238 TAAATTTTAA
* *
74117248 AAAATGACTA-TTTTGCCCTTATGTGTTAAAATGATGATTTTGCCCTTATGTGATAAAATGACAA
1 AAAATGAC-AGTTTTGCCCTTATGTGGTAAAATGATGATTTTGCCCTTATGTGATAAAATAACAA
* * * *
74117312 TTTTGCCCTTATGTGGCAAAATGACTGTTTT-CCCTTGTGTTAAAATGAC-GATTTTTCCCTTAT
65 TTTTGCCATTATGTGACAAAATGACTATTTTGCCCTTGTGTTAAAATGACAG-GTTTTCCCTTAT
74117375 GTGGT
129 GTGGT
* * * *
74117380 AAAATGACAGTTTTGCCTTTATGTGGCAAAATGATTG-TTTTGCCCTTATGTGTTAAAATAACGA
1 AAAATGACAGTTTTGCCCTTATGTGGTAAAATGA-TGATTTTGCCCTTATGTGATAAAATAACAA
*
74117444 TTTTTCCATTATGTGACAAAATGACTATTTTGCCCTTGTGTTAAAATGACAGGTTTTCCCTTATG
65 TTTTGCCATTATGTGACAAAATGACTATTTTGCCCTTGTGTTAAAATGACAGGTTTTCCCTTATG
74117509 TGGT
130 TGGT
*
74117513 AAAATGAC-GATTTTGCCCTTATATGGTAAAATGA
1 AAAATGACAG-TTTTGCCCTTATGTGGTAAAATGA
74117547 CGGAATAACG
Statistics
Matches: 148, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
131 1 0.01
132 81 0.55
133 65 0.44
134 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (133 bp):
AAAATGACAGTTTTGCCCTTATGTGGTAAAATGATGATTTTGCCCTTATGTGATAAAATAACAAT
TTTGCCATTATGTGACAAAATGACTATTTTGCCCTTGTGTTAAAATGACAGGTTTTCCCTTATGT
GGT
Found at i:74117740 original size:7 final size:7
Alignment explanation
Indices: 74117725--74117755 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
74117715 TATGACATGA
*
74117725 CATGTTG
1 CATGATG
74117732 CATGATG
1 CATGATG
74117739 CATGATG
1 CATGATG
74117746 CATGATG
1 CATGATG
74117753 CAT
1 CAT
74117756 TGCATAGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (7 bp):
CATGATG
Found at i:74118016 original size:18 final size:18
Alignment explanation
Indices: 74117989--74118042 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
74117979 AGGACTTGCA
*
74117989 TACTGCTTACTGTTACTG
1 TACTGATTACTGTTACTG
*
74118007 TACTGATTACTATTACTG
1 TACTGATTACTGTTACTG
74118025 TACT-ATTTACTGTTACTG
1 TACTGA-TTACTGTTACTG
74118043 CTATGGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
17 1 0.03
18 31 0.97
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (18 bp):
TACTGATTACTGTTACTG
Found at i:74121975 original size:24 final size:23
Alignment explanation
Indices: 74121943--74122051 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
74121933 ACCAAACGTT
* **
74121943 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
74121967 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
74121991 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
74122015 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
74122039 GCACACATAGTGC
1 GCACACATAGTGC
74122052 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:74122017 original size:48 final size:48
Alignment explanation
Indices: 74121943--74122051 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
74121933 ACCAAACGTT
* **
74121943 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
74121991 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
74122039 GCACACATAGTGC
1 GCACACATAGTGC
74122052 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:74126320 original size:6 final size:6
Alignment explanation
Indices: 74126311--74126357 Score: 69
Period size: 6 Copynumber: 7.8 Consensus size: 6
74126301 CTGTCACGTA
*
74126311 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTC ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
74126358 CATTTTGGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
5 2 0.05
6 34 0.89
7 2 0.05
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:74128962 original size:27 final size:27
Alignment explanation
Indices: 74128932--74129172 Score: 294
Period size: 27 Copynumber: 9.0 Consensus size: 27
74128922 ACAATGACCA
74128932 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
74128959 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
74128986 AAATA-CCCCATA-AGCAAAATGGACTG
1 AAATACCCCCATAGGGTAAAAT-GACTG
* *
74129012 GAATA-CCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
74129038 AAATACCCCCATAGGGTAAAATGA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* *
74129065 AAATACCCCCATAGGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* * *
74129092 AAATACCCTCATAGGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
**
74129119 AAATACCCCTGTAGGGTAAAATGACT-
1 AAATACCCCCATAGGGTAAAATGACTG
* *
74129145 ATAATACCCCTATAAGGTAAAATGACTG
1 A-AATACCCCCATAGGGTAAAATGACTG
74129173 TTTTTCCCTT
Statistics
Matches: 187, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
25 6 0.03
26 31 0.17
27 150 0.80
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.18
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:74129275 original size:160 final size:160
Alignment explanation
Indices: 74129109--74129438 Score: 355
Period size: 160 Copynumber: 2.1 Consensus size: 160
74129099 CTCATAGGAT
* * * *
74129109 AAAATGACCGAA-ATACCCCTGTAGGGTAAAATGACTATAATACCCCTATAA-GGTAAAATGACT
1 AAAATGA-CGAATATACCCCTATAGGATAAAATGACGATAATACCCCTA-AATGGAAAAATGACT
* *
74129172 GTTTTTCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACT-ATTTTTCCCTTA
64 GTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGA-TGATTTTTCCCTTA
** *
74129236 TGTGTTAAAATGA-TGGTTTTGCCCTTATGTGGC
128 TGTGGAAAAATGACT-GTTTTGCCATTATGTGGC
* * * * * * * ** * *
74129269 AAAATGA-TAATTTTGCCCTTATATGATAAAATGGCGGTTTTGCCCTTAAATGGAAAAATGACTG
1 AAAATGACGAA-TATACCCCTATAGGATAAAATGACGATAATACCCCTAAATGGAAAAATGACTG
** * *
74129333 TTTTGCCCTTGTGTTAAAATGATGATTTTTCCCTTATGTGATAAAATGATGATTTTTCCCTTATG
65 TTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGATGATTTTTCCCTTATG
*
74129398 TGGAAAAATGACTGTTTTGCCATTATGTGGT
130 TGGAAAAATGACTGTTTTGCCATTATGTGGC
74129429 AAAATGACGA
1 AAAATGACGA
74129439 TTTTTCATTT
Statistics
Matches: 138, Mismatches: 26, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
158 2 0.01
159 3 0.02
160 131 0.95
161 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (160 bp):
AAAATGACGAATATACCCCTATAGGATAAAATGACGATAATACCCCTAAATGGAAAAATGACTGT
TTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGATGATTTTTCCCTTATGT
GGAAAAATGACTGTTTTGCCATTATGTGGC
Found at i:74129416 original size:133 final size:135
Alignment explanation
Indices: 74129188--74129481 Score: 346
Period size: 133 Copynumber: 2.2 Consensus size: 135
74129178 CCCTTGTGTT
* *
74129188 AAAATGACAATTTTGCCCTTATGTGGCAAAATGACTATTTTTCCCTTATGTGTTAAAATGATGGT
1 AAAATGACAATTTTGCCCTTATGTGGCAAAATGACTATTTTTCCCTTATGTGATAAAATGATGAT
* *
74129253 TTTGCCCTTATGTGGCAAAATGATAATTTTGCCCTTATATGATAAAATGGCGGTTTTGCCCTTAA
66 TTTGCCCTTATGTGGAAAAATGATAATTTTGCCATTATATGATAAAATGGCGGTTTTGCCCTTAA
74129318 ATGGA
131 ATGGA
** **
74129323 AAAATGACTGTTTTGCCC-T-TGTGTTAAAATGA-TGATTTTTCCCTTATGTGATAAAATGATGA
1 AAAATGACAATTTTGCCCTTATGTGGCAAAATGACT-ATTTTTCCCTTATGTGATAAAATGATGA
* * * * * * * **
74129385 TTTTTCCCTTATGTGGAAAAATGACT-GTTTTGCCATTATGTGGTAAAATGACGATTTTTCATTT
65 TTTTGCCCTTATGTGGAAAAATGA-TAATTTTGCCATTATATGATAAAATGGCGGTTTTGCCCTT
* *
74129449 ATGA-GGT
129 A-AATGGA
*
74129456 AAAATGACTATTTTGCCCTTATGTGG
1 AAAATGACAATTTTGCCCTTATGTGG
74129482 TAGGATGATT
Statistics
Matches: 133, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
132 1 0.01
133 108 0.81
134 4 0.03
135 20 0.15
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (135 bp):
AAAATGACAATTTTGCCCTTATGTGGCAAAATGACTATTTTTCCCTTATGTGATAAAATGATGAT
TTTGCCCTTATGTGGAAAAATGATAATTTTGCCATTATATGATAAAATGGCGGTTTTGCCCTTAA
ATGGA
Found at i:74129496 original size:27 final size:27
Alignment explanation
Indices: 74129160--74129500 Score: 295
Period size: 27 Copynumber: 12.8 Consensus size: 27
74129150 ACCCCTATAA
*
74129160 GGTAAAATGACTGTTTTTCCC-T-TGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* **
74129185 GTTAAAATGACAATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
74129212 GGCAAAATGACTATTTTTCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
74129239 GTTAAAATGA-TGGTTTTGCCCTTATGT
1 GGTAAAATGACT-GTTTTGCCCTTATGT
* * *
74129266 GGCAAAATGA-TAATTTTGCCCTTATAT
1 GGTAAAATGACT-GTTTTGCCCTTATGT
* * * **
74129293 GATAAAATGGCGGTTTTGCCCTTAAAT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
74129320 GGAAAAATGACTGTTTTGCCC-T-TGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* *
74129345 GTTAAAATGA-TGATTTTTCCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* *
74129372 GATAAAATGA-TGATTTTTCCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* *
74129399 GGAAAAATGACTGTTTTGCCATTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* ** *
74129426 GGTAAAATGAC-GATTTTTCATTTATGA
1 GGTAAAATGACTG-TTTTGCCCTTATGT
*
74129453 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** *
74129480 GGTAGGATGATTGTTTTGCCC
1 GGTAAAATGACTGTTTTGCCC
74129501 CTGTGTGATG
Statistics
Matches: 255, Mismatches: 51, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
24 2 0.01
25 33 0.13
26 5 0.02
27 213 0.84
28 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:74129500 original size:160 final size:160
Alignment explanation
Indices: 74129163--74129476 Score: 411
Period size: 160 Copynumber: 2.0 Consensus size: 160
74129153 CCTATAAGGT
* *
74129163 AAAATGACTGTTTTTCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACTATTT
1 AAAATGACTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGACTATTT
** * * *
74129228 TTCCCTTATGTGTTAAAATGATGGTTTTGCCCTTATGTGGCAAAATGATAATTTTGCCCTTATAT
66 TTCCCTTATGTGGAAAAATGATGGTTTTGCCATTATGTGGCAAAATGACAATTTTGCCATTATAT
* *
74129293 GATAAAATGGCGGTTTTGCCCTTAAATGGA
131 GATAAAATGACGATTTTGCCCTTAAATGGA
** * *
74129323 AAAATGACTGTTTTGCCCTTGTGTTAAAATGATGATTTTTCCCTTATGTGATAAAATGA-TGATT
1 AAAATGACTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGACT-ATT
* * *
74129387 TTTCCCTTATGTGGAAAAATGACT-GTTTTGCCATTATGTGGTAAAATGACGATTTT-TCATT-T
65 TTTCCCTTATGTGGAAAAATGA-TGGTTTTGCCATTATGTGGCAAAATGACAATTTTGCCATTAT
*
74129449 ATGAGGTAAAATGACTATTTTGCCCTTA
129 ATGA--TAAAATGACGATTTTGCCCTTA
74129477 TGTGGTAGGA
Statistics
Matches: 133, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
158 5 0.04
159 4 0.03
160 123 0.92
161 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (160 bp):
AAAATGACTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGACTATTT
TTCCCTTATGTGGAAAAATGATGGTTTTGCCATTATGTGGCAAAATGACAATTTTGCCATTATAT
GATAAAATGACGATTTTGCCCTTAAATGGA
Found at i:74146907 original size:44 final size:42
Alignment explanation
Indices: 74146833--74146984 Score: 121
Period size: 43 Copynumber: 3.5 Consensus size: 42
74146823 ATGTGTTTTT
* * *
74146833 GTGTAAGACCATGTCTGGGACGTTGGCATCG-ACTTCT-ATTTTAC
1 GTGTAAGACCATGTCTGGGACATCGACATCGTA--TCTGA-TTT-C
74146877 GTGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTC
* * * * * * *
74146919 GTGTAAGACCCTGTATGGGACAGT-GGCATCAATGTTTGATTAC
1 GTGTAAGACCATGTCTGGGACA-TCGACATC-GTATCTGATTTC
* *
74146962 ATGTAAGACCACGTCTGGGACAT
1 GTGTAAGACCATGTCTGGGACAT
74146985 TGGCATTGTA
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 27 0.30
43 33 0.37
44 29 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGACATCGTATCTGATTTC
Found at i:74149047 original size:32 final size:32
Alignment explanation
Indices: 74149006--74149066 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
74148996 TGTAACCCGC
*
74149006 CCATAAGTGAACTCGGTCTCAACTCAACGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGCAT
74149038 CCATAAGTGAACTCGGACTCAACTCAACG
1 CCATAAGTGAACTCGGACTCAACTCAACG
74149067 AGTTCGGATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (32 bp):
CCATAAGTGAACTCGGACTCAACTCAACGCAT
Found at i:74149160 original size:46 final size:47
Alignment explanation
Indices: 74149033--74149167 Score: 179
Period size: 46 Copynumber: 2.9 Consensus size: 47
74149023 CTCAACTCAA
*
74149033 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCT
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCT
* * *
74149080 AGTTACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CT
1 CG---CATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCT
74149126 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74149168 TGCCCAAATA
Statistics
Matches: 75, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 32 0.43
47 31 0.41
48 2 0.03
49 1 0.01
50 3 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (47 bp):
CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCT
Found at i:74151599 original size:15 final size:15
Alignment explanation
Indices: 74151599--74151638 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
74151589 AGAATAAAGA
74151599 AATAAAGAAATCCAG
1 AATAAAGAAATCCAG
*
74151614 AATAAAGAGATCCAG
1 AATAAAGAAATCCAG
*
74151629 GATAAAGAAA
1 AATAAAGAAA
74151639 CCCAAGATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.60, C:0.10, G:0.17, T:0.12
Consensus pattern (15 bp):
AATAAAGAAATCCAG
Found at i:74151612 original size:38 final size:38
Alignment explanation
Indices: 74151561--74151638 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 38
74151551 AAGAAAACCG
*
74151561 AATAAAGAAATCCA-AGATAGAGAAACCCAGAATAAAGA
1 AATAAAGAAATCCAGA-ATAAAGAAACCCAGAATAAAGA
* * *
74151599 AATAAAGAAATCCAGAATAAAGAGATCCAGGATAAAGA
1 AATAAAGAAATCCAGAATAAAGAAACCCAGAATAAAGA
74151637 AA
1 AA
74151639 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 34 0.97
39 1 0.03
ACGTcount: A:0.60, C:0.12, G:0.17, T:0.12
Consensus pattern (38 bp):
AATAAAGAAATCCAGAATAAAGAAACCCAGAATAAAGA
Found at i:74151647 original size:15 final size:15
Alignment explanation
Indices: 74151600--74151647 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
74151590 GAATAAAGAA
74151600 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
74151614 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
74151630 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
74151645 ATA
1 ATA
74151648 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:74158072 original size:37 final size:37
Alignment explanation
Indices: 74158006--74158083 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
74157996 TTCCAACCGA
* * * * *
74158006 AACATGCCAGATGCTCATAAGAGCTAATCCACTCGAT
1 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
*
74158043 AACACGCCAAATGTTCATAAGAGCCAATCCACCCAAT
1 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
74158080 AACA
1 AACA
74158084 TGTCAATTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.40, C:0.29, G:0.13, T:0.18
Consensus pattern (37 bp):
AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
Found at i:74159232 original size:21 final size:20
Alignment explanation
Indices: 74159208--74159247 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
74159198 TCTGAGCTTT
74159208 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
74159229 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
74159248 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:74159255 original size:20 final size:21
Alignment explanation
Indices: 74159213--74159255 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
74159203 GCTTTAATGA
*
74159213 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
74159234 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
74159254 TT
1 TT
74159256 TGTTAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:74164608 original size:17 final size:17
Alignment explanation
Indices: 74164583--74164616 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74164573 TATGTATGCA
*
74164583 GTGAAATCTATGTTTTG
1 GTGAAATCTATGGTTTG
*
74164600 GTGAGATCTATGGTTTG
1 GTGAAATCTATGGTTTG
74164617 ACAGATTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.06, G:0.29, T:0.44
Consensus pattern (17 bp):
GTGAAATCTATGGTTTG
Found at i:74167848 original size:29 final size:29
Alignment explanation
Indices: 74167813--74168005 Score: 314
Period size: 29 Copynumber: 6.7 Consensus size: 29
74167803 ATAAACGATC
*** *
74167813 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
74167842 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
74167871 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
74167900 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
* *
74167929 TTGCACACTTATTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
74167958 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
74167987 TCGCACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
74168006 CCTTCCAAGC
Statistics
Matches: 152, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 152 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.34
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:74167916 original size:87 final size:87
Alignment explanation
Indices: 74167813--74168032 Score: 316
Period size: 87 Copynumber: 2.5 Consensus size: 87
74167803 ATAAACGATC
* * *
74167813 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
74167878 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * * *
74167900 TCGCACACTTAGTGCCATATAATTTAAGTTTGCACACTTATTGCCATATAATTTAAGTTCGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
74167965 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * *
74167987 TCGCACACTTAGTGCCATAC-CTTCCAAGCCCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATACAATT-TAAGCTCGCACACATAGTGCCA
74168033 ATCTTGTCAC
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
86 2 0.02
87 115 0.98
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (87 bp):
TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
CTTAGTGCCATATAATTTAAGT
Found at i:74168021 original size:58 final size:58
Alignment explanation
Indices: 74167813--74168032 Score: 307
Period size: 58 Copynumber: 3.8 Consensus size: 58
74167803 ATAAACGATC
*** *
74167813 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
* *
74167871 TTGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
* * *
74167929 TTGCACACTTATTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
** * *
74167987 TCGCACACTTAGTGCCATA-CCTTCCAAGCCCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATAATT-TAAGCTCGCACACTTAGTGCCA
74168033 ATCTTGTCAC
Statistics
Matches: 147, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
57 2 0.01
58 145 0.99
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
Found at i:74168155 original size:17 final size:17
Alignment explanation
Indices: 74168133--74168177 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
74168123 TCATCATTCC
74168133 ATACACACACATTTTAT
1 ATACACACACATTTTAT
*
74168150 ATACACAC-CATCTTAT
1 ATACACACACATTTTAT
*
74168166 -TAAACACA-ATTT
1 ATACACACACATTT
74168178 GCATGGATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 7 0.29
17 8 0.33
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.33
Consensus pattern (17 bp):
ATACACACACATTTTAT
Found at i:74175297 original size:29 final size:29
Alignment explanation
Indices: 74175262--74175454 Score: 314
Period size: 29 Copynumber: 6.7 Consensus size: 29
74175252 ATAAACGATC
*** *
74175262 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
74175291 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
74175320 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
74175349 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
* *
74175378 TTGCACACTTATTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
74175407 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
74175436 TCGCACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
74175455 CCTTCCAAGC
Statistics
Matches: 152, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 152 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.34
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:74175365 original size:87 final size:87
Alignment explanation
Indices: 74175262--74175481 Score: 316
Period size: 87 Copynumber: 2.5 Consensus size: 87
74175252 ATAAACGATC
* * *
74175262 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
74175327 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * * *
74175349 TCGCACACTTAGTGCCATATAATTTAAGTTTGCACACTTATTGCCATATAATTTAAGTTCGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
74175414 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * *
74175436 TCGCACACTTAGTGCCATAC-CTTCCAAGCCCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATACAATT-TAAGCTCGCACACATAGTGCCA
74175482 ATCTTGTCAC
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
86 2 0.02
87 115 0.98
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (87 bp):
TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTCGCACA
CTTAGTGCCATATAATTTAAGT
Found at i:74175470 original size:58 final size:58
Alignment explanation
Indices: 74175262--74175481 Score: 307
Period size: 58 Copynumber: 3.8 Consensus size: 58
74175252 ATAAACGATC
*** *
74175262 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
* *
74175320 TTGCACACTTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
* * *
74175378 TTGCACACTTATTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
** * *
74175436 TCGCACACTTAGTGCCATA-CCTTCCAAGCCCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATAATT-TAAGCTCGCACACTTAGTGCCA
74175482 ATCTTGTCAC
Statistics
Matches: 147, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
57 2 0.01
58 145 0.99
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGT
Found at i:74178866 original size:42 final size:42
Alignment explanation
Indices: 74178747--74178908 Score: 157
Period size: 42 Copynumber: 3.8 Consensus size: 42
74178737 TACCATACAA
* * *
74178747 ATGCCATAT-CCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATACC-AAATATGGTCTTACACGTAGTCTCGTATCG
** * *
74178789 ATGCCA-ATAGCCCATCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCCATATA--CCAAATATGGTCTTACACGTAGTCTCGTATCG
** * * *
74178832 ATTTCATATACCAAATATGGTTTTACATGTAGTCTCGTATTG
1 ATGCCATATACCAAATATGGTCTTACACGTAGTCTCGTATCG
* *
74178874 ATGCCATATCCCAGATATGGTCTTACACGTAGTCT
1 ATGCCATATACCAAATATGGTCTTACACGTAGTCT
74178909 TAGTAACCCT
Statistics
Matches: 95, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.02
42 60 0.63
43 28 0.29
44 5 0.05
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (42 bp):
ATGCCATATACCAAATATGGTCTTACACGTAGTCTCGTATCG
Found at i:74180587 original size:25 final size:23
Alignment explanation
Indices: 74180533--74180592 Score: 93
Period size: 23 Copynumber: 2.5 Consensus size: 23
74180523 AAAGAAAATT
*
74180533 CTGAATTTTATAGGATATATGTG
1 CTGAATTTTATAGAATATATGTG
74180556 CTGAATTTTATAGAATATATGTG
1 CTGAATTTTATAGAATATATGTG
74180579 CTGTAAATTTTATA
1 CTG--AATTTTATA
74180593 TTAAAATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
23 25 0.74
25 9 0.26
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (23 bp):
CTGAATTTTATAGAATATATGTG
Found at i:74186375 original size:30 final size:30
Alignment explanation
Indices: 74186341--74186401 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74186331 TCCTTAACTC
74186341 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74186371 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74186401 A
1 A
74186402 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74189701 original size:40 final size:39
Alignment explanation
Indices: 74189656--74189863 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
74189646 CGGAATACAA
*
74189656 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74189696 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74189736 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
74189776 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
74189816 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
74189856 CCGGATAT
1 CCGGATAT
74189864 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74189796 original size:80 final size:80
Alignment explanation
Indices: 74189656--74189862 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
74189646 CGGAATACAA
* * *
74189656 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
74189720 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
74189736 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
74189800 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
74189816 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
74189863 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:74197754 original size:40 final size:39
Alignment explanation
Indices: 74197709--74197916 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
74197699 CGGAATACAA
*
74197709 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74197749 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74197789 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
74197829 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
74197869 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
74197909 CCGGATAT
1 CCGGATAT
74197917 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74197849 original size:80 final size:80
Alignment explanation
Indices: 74197709--74197915 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
74197699 CGGAATACAA
* * *
74197709 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
74197773 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
74197789 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
74197853 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
74197869 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
74197916 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:74200154 original size:15 final size:16
Alignment explanation
Indices: 74200128--74200157 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
74200118 ACATATAATT
74200128 TATTTCATTATACCAA
1 TATTTCATTATACCAA
74200144 TATTTCA-TATACCA
1 TATTTCATTATACCA
74200158 TAGTTTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTTCATTATACCAA
Found at i:74202108 original size:30 final size:30
Alignment explanation
Indices: 74202074--74202134 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74202064 TCCTTAACTC
74202074 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74202104 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74202134 A
1 A
74202135 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74203515 original size:30 final size:30
Alignment explanation
Indices: 74203449--74203535 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
74203439 CATGTATAAC
* *
74203449 AGAGAACATCTACAAAGGCTTCCA-ATTATT
1 AGAGAACAACCACAAAGGCTTCCACA-TATT
74203479 AGAGAACAACCACAAAGGCTTCCACATATCT
1 AGAGAACAACCACAAAGGCTTCCACATAT-T
* * *
74203510 A-AGAACACCCACACAGGATTCCACAT
1 AGAGAACAACCACAAAGGCTTCCACAT
74203536 TTCGATAATC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (30 bp):
AGAGAACAACCACAAAGGCTTCCACATATT
Found at i:74203810 original size:54 final size:54
Alignment explanation
Indices: 74203649--74203812 Score: 220
Period size: 54 Copynumber: 3.0 Consensus size: 54
74203639 ACATGATACG
* * * * ** *
74203649 ATAGTCCCAAACTAGGTCTTACACTATGTTGTCTTCATTTCCCTGTATGATGTG
1 ATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCTTTTCCCCATATGATGTC
* * *
74203703 ATAGTCCCAGACAAGGTCTTACAATATATGGTCTTCTTTTCCTCATATGATGTC
1 ATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCTTTTCCCCATATGATGTC
**
74203757 ATAGTTTCAGACTAGGTCTTACACTATATGGTCTTCTTTTCCCCATATGATGTC
1 ATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCTTTTCCCCATATGATGTC
74203811 AT
1 AT
74203813 TGTAACACCC
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 95 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (54 bp):
ATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCTTTTCCCCATATGATGTC
Found at i:74217225 original size:66 final size:65
Alignment explanation
Indices: 74217119--74217259 Score: 176
Period size: 66 Copynumber: 2.1 Consensus size: 65
74217109 ATGCTTGATC
* *
74217119 TTTAGCGGCACTTTTCAAAAAACGCCGCAAAAAATTTTGCATAATGCCA-TCATTTTATATTGAG
1 TTTAGTGGCACTTTTCAAAAAACGCCGCAAAAAATTTTGCA-AA-ACCAGTCATTTTATATTGAG
74217183 CT
64 CT
** * * * *
74217185 TTTAGTGGCACTTTTTTAAAAACGCTGCAAAAAGTTTTGCAAAACTATGTCGTTTTATATTGAGC
1 TTTAGTGGCACTTTTCAAAAAACGCCGCAAAAAATTTTGCAAAACCA-GTCATTTTATATTGAGC
74217250 T
65 T
74217251 TTTAGTGGC
1 TTTAGTGGC
74217260 TTTAGCGGCG
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
64 2 0.03
65 2 0.03
66 61 0.94
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (65 bp):
TTTAGTGGCACTTTTCAAAAAACGCCGCAAAAAATTTTGCAAAACCAGTCATTTTATATTGAGCT
Found at i:74218150 original size:21 final size:21
Alignment explanation
Indices: 74218126--74218172 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
74218116 TTAGGGTGTA
74218126 GGTTTAT-AGTCTAAGATTTAG
1 GGTTTATGA-TCTAAGATTTAG
* *
74218147 GGTTTATGATCTAGGATTTGG
1 GGTTTATGATCTAAGATTTAG
74218168 GGTTT
1 GGTTT
74218173 GGGGACTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.21, C:0.04, G:0.30, T:0.45
Consensus pattern (21 bp):
GGTTTATGATCTAAGATTTAG
Found at i:74218815 original size:9 final size:8
Alignment explanation
Indices: 74218797--74218918 Score: 55
Period size: 7 Copynumber: 15.8 Consensus size: 8
74218787 TTTATATGTT
74218797 AATTTAAA
1 AATTTAAA
74218805 AATTATAAA
1 AATT-TAAA
74218814 AATCTTCAAAAA
1 AAT-TT---AAA
74218826 AATTT-AA
1 AATTTAAA
*
74218833 AATTT-GA
1 AATTTAAA
74218840 AATTTAAA
1 AATTTAAA
74218848 AA--TAAA
1 AATTTAAA
*
74218854 GA-TTAAA
1 AATTTAAA
*
74218861 AA-TTCAA
1 AATTTAAA
*
74218868 AA-TTCAA
1 AATTTAAA
*
74218875 AA-TTCAA
1 AATTTAAA
*
74218882 AATTCAAA
1 AATTTAAA
*
74218890 AACTTAAA
1 AATTTAAA
74218898 AATTT-AA
1 AATTTAAA
*
74218905 TATTTAAA
1 AATTTAAA
*
74218913 ACTTTA
1 AATTTA
74218919 GTCCATATTT
Statistics
Matches: 92, Mismatches: 13, Indels: 18
0.75 0.11 0.15
Matches are distributed among these distances:
6 5 0.05
7 44 0.48
8 26 0.28
9 8 0.09
10 1 0.01
11 2 0.02
12 6 0.07
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.34
Consensus pattern (8 bp):
AATTTAAA
Found at i:74218836 original size:7 final size:7
Alignment explanation
Indices: 74218824--74218918 Score: 66
Period size: 7 Copynumber: 13.1 Consensus size: 7
74218814 AATCTTCAAA
74218824 AAAATTT
1 AAAATTT
74218831 AAAATTT
1 AAAATTT
*
74218838 GAAATTT
1 AAAATTT
*
74218845 AAAA-AT
1 AAAATTT
*
74218851 AAAGATTA
1 AAA-ATTT
*
74218859 AAAATTC
1 AAAATTT
*
74218866 AAAATTC
1 AAAATTT
*
74218873 AAAATTC
1 AAAATTT
*
74218880 AAAATTCA
1 AAAATT-T
*
74218888 AAAACTTA
1 AAAA-TTT
74218896 AAAATTT
1 AAAATTT
*
74218903 AATATTT
1 AAAATTT
74218910 AAAACTTT
1 AAAA-TTT
74218918 A
1 A
74218919 GTCCATATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
6 4 0.05
7 51 0.70
8 16 0.22
9 2 0.03
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (7 bp):
AAAATTT
Found at i:74224755 original size:35 final size:35
Alignment explanation
Indices: 74224685--74224756 Score: 85
Period size: 35 Copynumber: 2.1 Consensus size: 35
74224675 TTTAATTGTG
*
74224685 TTATTAATTTATTATTTTAAATTATAAATTTAAAT
1 TTATTAATTTATTATTTTAAATTATAAATTAAAAT
* *
74224720 TTATTAATTT-TTATATTT-AGTTTTAAAGTTAAAAT
1 TTATTAATTTATTAT-TTTAAATTATAAA-TTAAAAT
74224755 TT
1 TT
74224757 TAATAGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 11 0.34
35 21 0.66
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (35 bp):
TTATTAATTTATTATTTTAAATTATAAATTAAAAT
Found at i:74226093 original size:44 final size:44
Alignment explanation
Indices: 74226039--74226255 Score: 138
Period size: 47 Copynumber: 4.7 Consensus size: 44
74226029 ATACGTGCTG
74226039 ATGCATGTCCCAGACATGTCTTACACTAGCACAACTC-TT-A-GCCA
1 ATGCATGTCCCAGACATGTCTTACACT-GCAC-A-TCGTTGAGGCCA
* * * * *
74226083 ATGCTTGTCCCAGACACGTTTTACACTGGCTATCATCGTTGAGGTCG
1 ATGCATGTCCCAGACATGTCTTACACT-GC-A-CATCGTTGAGGCCA
* * * *
74226130 ATGCATGTCCCAGACATGTCTTACACTGCAC-TCGTCTCTATGTCG
1 ATGCATGTCCCAGACATGTCTTACACTGCACATCGT-T-GAGGCCA
* * * * * *
74226175 ATGCCATGTCCCAGGCGTGGTCTTATACTGGCAC-TCATAATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACT-GCACATCGT--TGAGGCCA
74226223 ATGCATGTCCCAGACATGTCTTACACTGGCACA
1 ATGCATGTCCCAGACATGTCTTACACT-GCACA
74226256 CAAGAAATCT
Statistics
Matches: 138, Mismatches: 23, Indels: 21
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.03
44 30 0.22
45 13 0.09
46 30 0.22
47 47 0.34
48 13 0.09
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTGCACATCGTTGAGGCCA
Found at i:74234200 original size:39 final size:40
Alignment explanation
Indices: 74234086--74234270 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74234076 GCTACTCGTT
*
74234086 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
74234126 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
74234166 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74234205 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
74234246 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74234271 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74234254 original size:79 final size:80
Alignment explanation
Indices: 74234086--74234270 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
74234076 GCTACTCGTT
* * *
74234086 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCAGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
74234150 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * * **
74234167 CAATGCCTT-TGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
74234230 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
74234246 CAAAGCCTTCAGGACTTAGCCCGGA
1 CAAAGCCTTCAGGACTTAGCCCGGA
74234271 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 23 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:74238643 original size:40 final size:40
Alignment explanation
Indices: 74238556--74238706 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
74238546 AATTGAATGA
* * * **
74238556 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
74238596 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
74238637 -ATCCGGGCTAAGACCCGAAGG-AATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
74238676 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
74238707 AAATCGTGAT
Statistics
Matches: 90, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
38 1 0.01
39 6 0.07
40 80 0.89
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:74238720 original size:40 final size:39
Alignment explanation
Indices: 74238555--74238738 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
74238545 AAATTGAATG
* * *
74238555 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
74238595 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * * *
74238635 ACATCCGGGCTAAGACCCGAAGGAATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
74238675 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
74238714 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
74238739 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 102 0.92
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:74248976 original size:40 final size:39
Alignment explanation
Indices: 74248931--74249060 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
74248921 CGGAATATAA
74248931 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
74248971 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74249011 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
74249051 CCGGATATAA
1 CCGGATATAA
74249061 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74249075 original size:40 final size:40
Alignment explanation
Indices: 74248947--74249098 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
74248937 ATAACCATGT
* * *
74248947 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
74248987 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
74249027 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
74249067 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
74249099 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:74249081 original size:80 final size:80
Alignment explanation
Indices: 74248947--74249096 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
74248937 ATAACCATGT
*
74248947 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
74249011 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
74249027 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
74249090 CCCGGAT
64 CCCGGAT
74249097 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:74258282 original size:40 final size:40
Alignment explanation
Indices: 74258161--74258303 Score: 193
Period size: 39 Copynumber: 3.6 Consensus size: 40
74258151 TATCCGGGTT
* ** * *
74258161 AAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGC-A
1 AAGTCCCGCAGGCATTTGTGCTGGTATTATATCCAGGCTA
74258200 AAGTCCCGCAGGCATTTGTGCTGGTATTATATCCAGGCTA
1 AAGTCCCGCAGGCATTTGTGCTGGTATTATATCCAGGCTA
74258240 AAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCAGGCTTA
1 AAGTCCCGCAGGCATTTGTGCTGGTATTATATCCAGGC-TA
* *
74258280 AAGTCCCGCATGC-TTTGTGGTGGT
1 AAGTCCCGCAGGCATTTGTGCTGGT
74258304 GATTGGATTT
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 57 0.60
40 38 0.40
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
AAGTCCCGCAGGCATTTGTGCTGGTATTATATCCAGGCTA
Found at i:74259284 original size:16 final size:15
Alignment explanation
Indices: 74259263--74259317 Score: 74
Period size: 16 Copynumber: 3.5 Consensus size: 15
74259253 GTTTGGTTCA
*
74259263 CTGTAATGAAATAGGG
1 CTGTAATG-AATAGAG
74259279 CTGTAATTGAATAGAG
1 CTGTAA-TGAATAGAG
74259295 CTGTAATGGAATAGAG
1 CTGTAAT-GAATAGAG
74259311 CTGTAAT
1 CTGTAAT
74259318 CAGTAATTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
15 1 0.03
16 33 0.92
17 2 0.06
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (15 bp):
CTGTAATGAATAGAG
Found at i:74259354 original size:46 final size:44
Alignment explanation
Indices: 74259302--74259390 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
74259292 GAGCTGTAAT
* *
74259302 GGAATAGAGCTGTAATCAGTAATTC-AGCTGTTTGGTTGAATGGAAC
1 GGAATAGAACTGTAAT-AGT-ATCCTAG-TGTTTGGTTGAATGGAAC
*
74259348 GGAATAGAACTGTAATAGTATCCTTGTGTTTGGTTGAATGGAA
1 GGAATAGAACTGTAATAGTATCCTAGTGTTTGGTTGAATGGAA
74259391 TGATATTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 20 0.51
45 4 0.10
46 15 0.38
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.33
Consensus pattern (44 bp):
GGAATAGAACTGTAATAGTATCCTAGTGTTTGGTTGAATGGAAC
Found at i:74259558 original size:59 final size:61
Alignment explanation
Indices: 74259488--74259663 Score: 207
Period size: 63 Copynumber: 2.9 Consensus size: 61
74259478 TATTAATTTA
* *
74259488 TAATAGAATTATTATTAAATATAATTTAAT-AATA-AATAATAAATAATTTAAT-CATACTT
1 TAATATAATTATTATTAAATATAATTTAATAAAGATAATAATAAATAATTTAATACATAC-T
* *
74259547 TAATATAATTATTATTAAATATAATTTAATAAAGATAATAATATATAATTTAATAACATTCT
1 TAATATAATTATTATTAAATATAATTTAATAAAGATAATAATAAATAATTTAAT-ACATACT
* * * *
74259609 TAATATAATTATTATTAAAATATGAA-TGAATAAAAATCATAATATATAATATTAA
1 TAATATAATTATTATT-AAATAT-AATTTAATAAAGATAATAATAAATAAT-TTAA
74259664 AAAATAGTAT
Statistics
Matches: 103, Mismatches: 7, Indels: 9
0.87 0.06 0.08
Matches are distributed among these distances:
59 29 0.28
60 3 0.03
61 17 0.17
62 17 0.17
63 31 0.30
64 6 0.06
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.41
Consensus pattern (61 bp):
TAATATAATTATTATTAAATATAATTTAATAAAGATAATAATAAATAATTTAATACATACT
Found at i:74273274 original size:30 final size:29
Alignment explanation
Indices: 74273195--74273276 Score: 74
Period size: 30 Copynumber: 2.7 Consensus size: 29
74273185 AGTGTAACAG
* *
74273195 AGAACAGTCACAGAGGCTTCCACTTATCAA
1 AGAACAGT-ACAAAGGCTTCCACATATCAA
* * * * *
74273225 AGAAAAGCCATAAATGCTTCCACATATCTA
1 AGAACAG-TACAAAGGCTTCCACATATCAA
74273255 AGAACAGATACAAAGGCTTCCA
1 AGAACAG-TACAAAGGCTTCCA
74273277 TATTTCAGTA
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (29 bp):
AGAACAGTACAAAGGCTTCCACATATCAA
Found at i:74273449 original size:51 final size:53
Alignment explanation
Indices: 74273394--74273532 Score: 185
Period size: 53 Copynumber: 2.7 Consensus size: 53
74273384 AGGCGACGTG
*
74273394 ATAGTCCTAGAATAGGTCTTACACTATATGGT-TTTT-CCCCCATATGATGCC
1 ATAGTCCTAGACTAGGTCTTACACTATATGGTCTTTTCCCCCCATATGATGCC
* * *
74273445 ATAGTCCGAGACTAGGTCTTACACT-TATGGTCTTTTCCCCCCCATTTGATGTC
1 ATAGTCCTAGACTAGGTCTTACACTATATGGTCTTTT-CCCCCCATATGATGCC
* * *
74273498 ATACTCTTAGACTAGATCTTACACTATATGGTCTT
1 ATAGTCCTAGACTAGGTCTTACACTATATGGTCTT
74273533 CTTGCCATGG
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
50 6 0.08
51 27 0.36
53 34 0.45
54 9 0.12
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (53 bp):
ATAGTCCTAGACTAGGTCTTACACTATATGGTCTTTTCCCCCCATATGATGCC
Found at i:74282587 original size:27 final size:27
Alignment explanation
Indices: 74282525--74282630 Score: 108
Period size: 27 Copynumber: 3.9 Consensus size: 27
74282515 CCACATAGGT
* * *
74282525 GTTCCTTTCACATTGCACCATAAAGGCA
1 GTTCCTTTCATATTGCACCACAAA-GAA
*
74282553 -TTTCTTTCATATTGCACCACAAAGAA
1 GTTCCTTTCATATTGCACCACAAAGAA
* *
74282579 GTTCATTTCATATCT-CATCACAAAGAA
1 GTTCCTTTCATAT-TGCACCACAAAGAA
* *
74282606 GTTCCTTTCATATTGCGCCATAAAG
1 GTTCCTTTCATATTGCACCACAAAG
74282631 GCTATCATAC
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 3 0.05
27 60 0.94
28 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (27 bp):
GTTCCTTTCATATTGCACCACAAAGAA
Found at i:74282876 original size:81 final size:82
Alignment explanation
Indices: 74282671--74282910 Score: 229
Period size: 81 Copynumber: 3.0 Consensus size: 82
74282661 ATTCTTTCGA
* *** ** *
74282671 AGTTCGCCACAAAGGCTCCCTTTTCAATGTT-AGCTGCAAAGGCTT-CTTTTTAAAAGTTAGCCA
1 AGTTCGCCACAAAGACTTTATTTTCAATGTTCA-CCACAAAGGCTTCCTTTTTAAGAGTTAGCCA
* *
74282734 TAAAGGCTT-TTTTTTAG
65 TAAAGGCTTCCTTTTCAG
* * * * *
74282751 TGTTCGCCATAAAGACTTTATTTTTAATGTTCACCAAAAAGGCTTCCTTTTT-AGAGTTAGCCAC
1 AGTTCGCCACAAAGACTTTATTTTCAATGTTCACCACAAAGGCTTCCTTTTTAAGAGTTAGCCAT
*
74282815 AAATGCTTCCTTTTCAG
66 AAAGGCTTCCTTTTCAG
* * * * * * *
74282832 AGTTTGCCACAAAGCCTTTCTTTTCAGA-GTTCGCCACAAAGGCTTCTTTTTTCAGAATTAGCCA
1 AGTTCGCCACAAAGACTTTATTTTCA-ATGTTCACCACAAAGGCTTCCTTTTTAAGAGTTAGCCA
74282896 TAAAGGCTTCCTTTT
65 TAAAGGCTTCCTTTT
74282911 TAGTGGTAGT
Statistics
Matches: 128, Mismatches: 27, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
80 50 0.39
81 54 0.42
82 24 0.19
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (82 bp):
AGTTCGCCACAAAGACTTTATTTTCAATGTTCACCACAAAGGCTTCCTTTTTAAGAGTTAGCCAT
AAAGGCTTCCTTTTCAG
Found at i:74282895 original size:28 final size:28
Alignment explanation
Indices: 74282671--74283011 Score: 186
Period size: 27 Copynumber: 12.8 Consensus size: 28
74282661 ATTCTTTCGA
* *
74282671 AGTTCGCCACAAAGGC-TCCCTTTTCA-
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
** * *
74282697 ATGTTAGCTGCAAAGGCTT-CTTTTTAAA
1 A-GTTAGCCACAAAGGCTTCCTTTTTCAG
* *
74282725 AGTTAGCCATAAAGGCTT--TTTTTTAG
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
* * * * **
74282751 TGTTCGCCATAAAGACTTTATTTTT-A-
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
*
74282777 ATGTTCA-CCAAAAAGGCTTCCTTTTT-AG
1 A-GTT-AGCCACAAAGGCTTCCTTTTTCAG
*
74282805 AGTTAGCCACAAATGCTTCC-TTTTCAG
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
* * *
74282832 AGTTTGCCACAAAGCCTTTC-TTTTCAG
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
* *
74282859 AGTTCGCCACAAAGGCTTCTTTTTTCAG
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
* *
74282887 AATTAGCCATAAAGGCTTCCTTTTT-AG
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
* * * *
74282914 TGGTAGTCATAAAGGCTTCAC----T-A-
1 AGTTAGCCACAAAGGCTTC-CTTTTTCAG
* *
74282937 A-TTAGTCACAAAGGTTTCC-TTTTCA-
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
* *
74282962 AATTAGCCACAAAGGCTTCATTTTT-AG
1 AGTTAGCCACAAAGGCTTCCTTTTTCAG
* * *
74282989 TGTTAGCAATAAAGGCTTCCTTT
1 AGTTAGCCACAAAGGCTTCCTTT
74283012 CCTAATGTGT
Statistics
Matches: 247, Mismatches: 49, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
21 1 0.00
22 14 0.06
24 3 0.01
25 2 0.01
26 43 0.17
27 147 0.60
28 37 0.15
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (28 bp):
AGTTAGCCACAAAGGCTTCCTTTTTCAG
Found at i:74282972 original size:26 final size:26
Alignment explanation
Indices: 74282936--74282985 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
74282926 AGGCTTCACT
* * *
74282936 AATTAGTCACAAAGGTTTCCTTTTCA
1 AATTAGCCACAAAGGCTTCATTTTCA
74282962 AATTAGCCACAAAGGCTTCATTTT
1 AATTAGCCACAAAGGCTTCATTTT
74282986 TAGTGTTAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (26 bp):
AATTAGCCACAAAGGCTTCATTTTCA
Found at i:74285106 original size:29 final size:29
Alignment explanation
Indices: 74284913--74285105 Score: 323
Period size: 29 Copynumber: 6.7 Consensus size: 29
74284903 GCTTGGAAGG
74284913 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
74284942 TATGGCACTAAGTGTGTGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
74284971 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
74285000 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
74285029 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * *
74285058 TATGGCACTATGTGTGCGAGCTTAAATTG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
74285087 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
74285106 GATCGTTTAT
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 153 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:74286985 original size:14 final size:14
Alignment explanation
Indices: 74286961--74287003 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
74286951 CTATTTGTTT
*
74286961 TTCTA-AAAATGGC
1 TTCTAGAAAATGAC
*
74286974 TTCTAGAAAATGAT
1 TTCTAGAAAATGAC
74286988 TTCTAGAAAATGAC
1 TTCTAGAAAATGAC
74287002 TT
1 TT
74287004 ACTTTTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 5 0.19
14 21 0.81
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (14 bp):
TTCTAGAAAATGAC
Found at i:74287776 original size:8 final size:8
Alignment explanation
Indices: 74287763--74287801 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
74287753 AAAATTTTAG
74287763 AATAATAA
1 AATAATAA
74287771 AATAATAA
1 AATAATAA
74287779 AATAATAA
1 AATAATAA
*
74287787 GAACTGATAA
1 -AA-TAATAA
74287797 AATAA
1 AATAA
74287802 AATATTAGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 18 0.67
9 4 0.15
10 5 0.19
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:74293791 original size:40 final size:40
Alignment explanation
Indices: 74293746--74293875 Score: 131
Period size: 40 Copynumber: 3.2 Consensus size: 40
74293736 CGGAATATAA
74293746 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74293786 CCGGATAGAA-TGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
74293826 CCGGATGTAGCCACTAGT--ACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-T-GTGCACAAATGCCTTCGGGTCTTAGC
74293866 CCGGATATAA
1 CCGGATATAA
74293876 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
39 2 0.03
40 66 0.94
42 1 0.01
43 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74293890 original size:40 final size:40
Alignment explanation
Indices: 74293762--74293913 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
74293752 ATAACCATGT
* * *
74293762 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
74293802 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
74293842 GTACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
74293882 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
74293914 CATTCAATTT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:74293896 original size:80 final size:80
Alignment explanation
Indices: 74293764--74293911 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
74293754 AACCATGTGC
*
74293764 ACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGCCC
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGCCC
74293828 GGATGTAGCCACTAGT
65 GGATGTAGCCACTAGT
* * * * *
74293844 ACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAGCC
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAGCC
74293907 CGGAT
64 CGGAT
74293912 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 55 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
ACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCCCG
GATGTAGCCACTAGT
Found at i:74296870 original size:24 final size:24
Alignment explanation
Indices: 74296843--74297016 Score: 198
Period size: 24 Copynumber: 7.3 Consensus size: 24
74296833 AAGGTCATGA
74296843 ATTGATTAAATGAAGGAATTTAAT
1 ATTGATTAAATGAAGGAATTTAAT
74296867 ATTGATTAAATGAAGGAATTTAAT
1 ATTGATTAAATGAAGGAATTTAAT
* *
74296891 ATTTATTAAATGAAAGAATTTAAT
1 ATTGATTAAATGAAGGAATTTAAT
* * *
74296915 CATTAATT--A-GCAAGG--TCATGA-
1 -ATTGATTAAATG-AAGGAAT-TTAAT
74296936 ATTGATTAAATGAAGGAATTTAAT
1 ATTGATTAAATGAAGGAATTTAAT
74296960 ATTGATTAAATGAAGGAATTTAAT
1 ATTGATTAAATGAAGGAATTTAAT
* *
74296984 ATTTATTAAATGAAAGAATTTAAT
1 ATTGATTAAATGAAGGAATTTAAT
*
74297008 CATTAATTA
1 -ATTGATTA
74297017 GCTACTTATT
Statistics
Matches: 128, Mismatches: 12, Indels: 19
0.81 0.08 0.12
Matches are distributed among these distances:
20 6 0.05
21 1 0.01
22 8 0.06
23 7 0.05
24 93 0.73
25 13 0.10
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.38
Consensus pattern (24 bp):
ATTGATTAAATGAAGGAATTTAAT
Found at i:74296992 original size:93 final size:93
Alignment explanation
Indices: 74296833--74297018 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
74296823 TTGTTGGGTA
74296833 AAGGTCATGAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAGGAATTTAATATTTATT
1 AAGGTCATGAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAGGAATTTAATATTTATT
74296898 AAATGAAAGAATTTAATCATTAATTAGC
66 AAATGAAAGAATTTAATCATTAATTAGC
74296926 AAGGTCATGAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAGGAATTTAATATTTATT
1 AAGGTCATGAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAGGAATTTAATATTTATT
74296991 AAATGAAAGAATTTAATCATTAATTAGC
66 AAATGAAAGAATTTAATCATTAATTAGC
74297019 TACTTATTTT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.37
Consensus pattern (93 bp):
AAGGTCATGAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAGGAATTTAATATTTATT
AAATGAAAGAATTTAATCATTAATTAGC
Found at i:74297013 original size:69 final size:71
Alignment explanation
Indices: 74296847--74297007 Score: 188
Period size: 69 Copynumber: 2.3 Consensus size: 71
74296837 TCATGAATTG
* *
74296847 ATTAAATGAAGGAATTTAATATTGATTAAATGAAGGAATTTAATATTTATTAAATGAAAGAATTT
1 ATTAAATGAAAGAATTT-A-ATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAAGAATTT
74296912 AATCATTA
64 AATCATTA
* * * *
74296920 ATT--A-GCAAG-GTCATGAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAGGAATTT
1 ATTAAATGAAAGAAT--TTAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAAGAATTT
*
74296981 AAT-ATTT
64 AATCATTA
74296988 ATTAAATGAAAGAATTTAAT
1 ATTAAATGAAAGAATTTAAT
74297008 CATTAATTAG
Statistics
Matches: 72, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
68 6 0.08
69 47 0.65
70 9 0.12
71 6 0.08
72 1 0.01
73 3 0.04
ACGTcount: A:0.47, C:0.02, G:0.14, T:0.37
Consensus pattern (71 bp):
ATTAAATGAAAGAATTTAATTGATTAAATGAAGGAATTTAATATTGATTAAATGAAAGAATTTAA
TCATTA
Found at i:74297494 original size:20 final size:20
Alignment explanation
Indices: 74297469--74297525 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
74297459 GTGTGGTCAC
*
74297469 ACACGCCTGTGTGACTCAAG
1 ACACGCCCGTGTGACTCAAG
**
74297489 ACACGCCCGTGTGACTCGGG
1 ACACGCCCGTGTGACTCAAG
*
74297509 ACACGCCCGTGTAACTC
1 ACACGCCCGTGTGACTC
74297526 TCTGACTATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (20 bp):
ACACGCCCGTGTGACTCAAG
Found at i:74302763 original size:51 final size:51
Alignment explanation
Indices: 74302705--74302865 Score: 268
Period size: 51 Copynumber: 3.2 Consensus size: 51
74302695 CTAATCACAT
*
74302705 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAG
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
74302756 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
74302807 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
74302858 TTGTCACT
1 TTATCACT
74302866 GATCAGAAGT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 105 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:74318180 original size:32 final size:32
Alignment explanation
Indices: 74318144--74318204 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
74318134 TGCATTTTAA
74318144 CATTTTAATAGTTAATGGATGATGGGCATTAG
1 CATTTTAATAGTTAATGGATGATGGGCATTAG
74318176 CATTTTAATAGTTAATGGATGATGGGCAT
1 CATTTTAATAGTTAATGGATGATGGGCAT
74318205 GGTAAGCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.38
Consensus pattern (32 bp):
CATTTTAATAGTTAATGGATGATGGGCATTAG
Found at i:74319709 original size:26 final size:26
Alignment explanation
Indices: 74319680--74319732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74319670 TTTACAGTTT
74319680 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
74319706 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
74319732 T
1 T
74319733 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:74326218 original size:32 final size:32
Alignment explanation
Indices: 74326182--74326246 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
74326172 TGTATGCATT
74326182 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74326214 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74326246 T
1 T
74326247 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:74327753 original size:26 final size:26
Alignment explanation
Indices: 74327724--74327776 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74327714 TTTACAATTT
74327724 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
74327750 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
74327776 T
1 T
74327777 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:74331652 original size:24 final size:24
Alignment explanation
Indices: 74331600--74331730 Score: 117
Period size: 24 Copynumber: 5.4 Consensus size: 24
74331590 CAGGTCATAT
* *
74331600 GAGCTTACTAATATATCAGCTCATAA
1 GAGCTTACTGAT-T-TCAGCTCGTAA
* *
74331626 GAGCTTACTGATCTCAGCTCGTCA
1 GAGCTTACTGATTTCAGCTCGTAA
74331650 GAGCTTACTG-TTTCCAGCTCGTAA
1 GAGCTTACTGATTT-CAGCTCGTAA
* *
74331674 TAGCTTACTGTTTTCAGCTCGTCAA
1 GAGCTTACTGATTTCAGCTCGT-AA
* *
74331699 -AGCTTAC-CATTTCAGCTC-AATA
1 GAGCTTACTGATTTCAGCTCGTA-A
74331721 GAGCTTACTG
1 GAGCTTACTG
74331731 TCCATCAGCT
Statistics
Matches: 88, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 18 0.20
24 52 0.59
25 5 0.06
26 11 0.12
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (24 bp):
GAGCTTACTGATTTCAGCTCGTAA
Found at i:74331941 original size:19 final size:19
Alignment explanation
Indices: 74331900--74331963 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
74331890 AAAAGCTATG
* * *
74331900 TGTTATATGGGTGAATTAT
1 TGTTATATGGATGAAGTAC
74331919 TGTTATATGGATGAAGTAC
1 TGTTATATGGATGAAGTAC
* *
74331938 TGTTTAAACGGATG-AGTTAC
1 TG-TTATATGGATGAAG-TAC
74331958 TGTTAT
1 TGTTAT
74331964 CGAATGATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
19 23 0.62
20 14 0.38
ACGTcount: A:0.28, C:0.05, G:0.25, T:0.42
Consensus pattern (19 bp):
TGTTATATGGATGAAGTAC
Found at i:74333141 original size:16 final size:17
Alignment explanation
Indices: 74333120--74333152 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
74333110 GTTTGAGTTT
74333120 AAATGATG-AATGTATG
1 AAATGATGTAATGTATG
74333136 AAATGATGTAATGTATG
1 AAATGATGTAATGTATG
74333153 CTAAATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.24, T:0.33
Consensus pattern (17 bp):
AAATGATGTAATGTATG
Found at i:74336647 original size:29 final size:29
Alignment explanation
Indices: 74336585--74336686 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 29
74336575 GTGACGAGAT
* * *
74336585 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
74336614 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * * **
74336643 TGGCATTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
74336672 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
74336687 ATGATTGAGT
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
28 3 0.05
29 53 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:74344576 original size:29 final size:29
Alignment explanation
Indices: 74344514--74344616 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
74344504 GTGACGAGAT
* * *
74344514 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
74344543 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
74344572 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
74344601 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74344617 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:74347103 original size:19 final size:17
Alignment explanation
Indices: 74347079--74347118 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
74347069 TTTTAATTAG
74347079 TATTATGAGATGAAAATAT
1 TATTATGAGA--AAAATAT
*
74347098 TATTATTAGAAAAATAT
1 TATTATGAGAAAAATAT
74347115 TATT
1 TATT
74347119 GTATGTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 11 0.55
19 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (17 bp):
TATTATGAGAAAAATAT
Found at i:74354163 original size:24 final size:24
Alignment explanation
Indices: 74354109--74354170 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
74354099 GATATAACAG
*
74354109 CTTGT-AAGAGCTTATTAATCTCAG
1 CTTGTCAA-AGCTTATTAATCTCAA
* * *
74354133 CTCGTCAAAGCTTATTATTTTCAA
1 CTTGTCAAAGCTTATTAATCTCAA
*
74354157 CTTGTCAGAGCTTA
1 CTTGTCAAAGCTTA
74354171 CCGTTTCAGC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
24 29 0.94
25 2 0.06
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (24 bp):
CTTGTCAAAGCTTATTAATCTCAA
Found at i:74354189 original size:23 final size:25
Alignment explanation
Indices: 74354163--74354220 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
74354153 TCAACTTGTC
*
74354163 AGAGCTTACCGT-T-TCAGCTCAAT
1 AGAGCTTACCGTCTATCAGCTCAAG
*
74354186 AGAGCTTACTGTCTATCAGCTCAAG
1 AGAGCTTACCGTCTATCAGCTCAAG
74354211 AGGAGCTTAC
1 A-GAGCTTAC
74354221 TAATCATAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 11 0.37
24 1 0.03
25 10 0.33
26 8 0.27
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
AGAGCTTACCGTCTATCAGCTCAAG
Found at i:74354924 original size:2 final size:2
Alignment explanation
Indices: 74354917--74354944 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
74354907 CTTTGGTTGC
74354917 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74354945 TCAAATATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74357579 original size:18 final size:18
Alignment explanation
Indices: 74357549--74357614 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
74357539 GGCCTATTTT
*
74357549 GTAAT-AGTAGCAGTGGCA
1 GTAATCAGT-GCAGTAGCA
*
74357567 GTAATCAGTGCAGTAACCA
1 GTAATCAGTGCAGT-AGCA
* *
74357586 -TGATCAATGCAGTAGCA
1 GTAATCAGTGCAGTAGCA
74357603 GTAATCAGTGCA
1 GTAATCAGTGCA
74357615 AAATGCAAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
17 3 0.08
18 30 0.79
19 5 0.13
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (18 bp):
GTAATCAGTGCAGTAGCA
Found at i:74358002 original size:27 final size:27
Alignment explanation
Indices: 74357956--74358018 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
74357946 GAACAAATCT
* *
74357956 GTCATTTTACCTTACCGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACA
*
74357983 GTCATTTTACCCTACAGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTACA
74358010 GTCATTTTA
1 GTCATTTTA
74358019 TCACATAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACA
Found at i:74358041 original size:27 final size:26
Alignment explanation
Indices: 74358010--74358136 Score: 137
Period size: 27 Copynumber: 4.7 Consensus size: 26
74358000 GGGTATTTCA
*
74358010 GTCATTTTATCACATAAAGGCAAAATT
1 GTCATTTTATCACAT-AAGGCAAAATC
* *
74358037 ATCATTTTATCACATAAGAGTAAAATC
1 GTCATTTTATCACATAAG-GCAAAATC
* *
74358064 GTCATTTTATCACATGAGGGAAAAATC
1 GTCATTTTATCACAT-AAGGCAAAATC
* *
74358091 GTCATTTTATCATATGAGGACAAAATC
1 GTCATTTTATCACATAAGG-CAAAATC
* *
74358118 TTTATTTTATCACATAAGG
1 GTCATTTTATCACATAAGG
74358137 GTTCAAGTAC
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
26 5 0.06
27 76 0.92
28 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (26 bp):
GTCATTTTATCACATAAGGCAAAATC
Found at i:74362055 original size:27 final size:27
Alignment explanation
Indices: 74361970--74362202 Score: 245
Period size: 27 Copynumber: 8.7 Consensus size: 27
74361960 TTACGTGTTT
* * * *
74361970 GCCAGAAAGCCTTCCTTTTCAAAATTA
1 GCCACAAAGGCTTCCTTTTCAGAGTTA
* *
74361997 GCCACAAAGG-TTCCTTTTCAGATTTT
1 GCCACAAAGGCTTCCTTTTCAGAGTTA
* *
74362023 TCCACAAAGGCTTCCTTTTTAGAGTTA
1 GCCACAAAGGCTTCCTTTTCAGAGTTA
** * * *
74362050 ATCACAAAGGCTTCCTTTTTAGTGTTC
1 GCCACAAAGGCTTCCTTTTCAGAGTTA
*
74362077 GCCACAAAGGCTTCCTTTTCAAAGTTA
1 GCCACAAAGGCTTCCTTTTCAGAGTTA
* * *
74362104 GTCATAAAGGCTTCGTTTTCA-ATGTTA
1 GCCACAAAGGCTTCCTTTTCAGA-GTTA
*
74362131 GCCACAAAAGCTTCCTTTTCAGAGTTA
1 GCCACAAAGGCTTCCTTTTCAGAGTTA
* * *
74362158 GCCACAAAGGCTTCTTTTTTAGTGTTA
1 GCCACAAAGGCTTCCTTTTCAGAGTTA
*
74362185 GCCTCAAAGGCTTCCTTT
1 GCCACAAAGGCTTCCTTT
74362203 CCTGACGTGT
Statistics
Matches: 171, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 23 0.13
27 147 0.86
28 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (27 bp):
GCCACAAAGGCTTCCTTTTCAGAGTTA
Found at i:74365597 original size:19 final size:19
Alignment explanation
Indices: 74365573--74365614 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
74365563 ACAAAAGACA
*
74365573 TAATAGTAAAATATGAAAT
1 TAATAGTAAAATATGAAAC
*
74365592 TAATAGTAAAATGTGAAAC
1 TAATAGTAAAATATGAAAC
74365611 TAAT
1 TAAT
74365615 TTTATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (19 bp):
TAATAGTAAAATATGAAAC
Found at i:74373064 original size:27 final size:27
Alignment explanation
Indices: 74373034--74373095 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
74373024 GGGCAAAATG
74373034 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
74373061 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
74373088 GTAATTTT
1 GTAATTTT
74373096 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:74373163 original size:27 final size:26
Alignment explanation
Indices: 74373078--74373163 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 26
74373068 TACCCTACAG
*
74373078 GGGTATTTTAGTAATTTTTCAAA-CCA
1 GGGTATTTTAGTAATTTTT-AAATCGA
* * *
74373104 TGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTAGTAATTTT-TAAATCGA
* *
74373132 AGGTATTTTTGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTT-TAAATCGA
74373159 GGGTA
1 GGGTA
74373164 AAATAGTAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (26 bp):
GGGTATTTTAGTAATTTTTAAATCGA
Found at i:74373200 original size:54 final size:54
Alignment explanation
Indices: 74373142--74373458 Score: 422
Period size: 54 Copynumber: 5.9 Consensus size: 54
74373132 AGGTATTTTT
* ** * * * * *
74373142 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * *
74373196 GTAATTCTATAAATCG-CGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * *
74373249 GTCATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
74373303 AT-ATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
74373356 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
74373410 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
74373459 CTTTGGTAAT
Statistics
Matches: 234, Mismatches: 27, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
53 92 0.39
54 142 0.61
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:74373241 original size:80 final size:81
Alignment explanation
Indices: 74373143--74373458 Score: 404
Period size: 80 Copynumber: 3.9 Consensus size: 81
74373133 GGTATTTTTG
* * * *
74373143 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATAA
1 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
*
74373208 ATCG-CGGTAAAACGA
66 ATCGAGGGTAAAACGA
* * *
74373223 TAATTTTGTAAATCGAGGGTAAAACAGTCATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAA
1 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
*
74373288 ATCGAGGGTAAAACAA
66 ATCGAGGGTAAAACGA
* * * * * *
74373304 T-ATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAA
1 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
*
74373368 ATCGAGGGTAAAACGG
66 ATCGAGGGTAAAACGA
* * ** *
74373384 TAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTA
1 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAG-TAATTCTATA
*
74373448 AATCGGGGGTA
65 AATCGAGGGTA
74373459 CTTTGGTAAT
Statistics
Matches: 208, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
80 132 0.63
81 76 0.37
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
ATCGAGGGTAAAACGA
Found at i:74373469 original size:27 final size:27
Alignment explanation
Indices: 74373142--74373458 Score: 377
Period size: 27 Copynumber: 11.8 Consensus size: 27
74373132 AGGTATTTTT
* **
74373142 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * **
74373169 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74373196 GTAATTCTATAAATCG-CGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74373222 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74373249 GTCATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74373276 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74373303 AT-ATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74373329 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
74373356 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74373383 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74373410 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74373437 ATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
74373459 CTTTGGTAAT
Statistics
Matches: 246, Mismatches: 42, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
26 40 0.16
27 206 0.84
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Done.