Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 25 of 328
Found at i:7309096 original size:26 final size:25
Alignment explanation
Indices: 7309046--7309102 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 25
7309036 TAAGTAAAAC
7309046 ATATTATTATATATATTAACTTTAA
1 ATATTATTATATATATTAACTTTAA
7309071 ATTATTATTATA-ATATATATAC-TTAA
1 A-TATTATTATATATAT-TA-ACTTTAA
7309097 ATATTA
1 ATATTA
7309103 AGTAAACTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
25 10 0.34
26 17 0.59
27 2 0.07
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
ATATTATTATATATATTAACTTTAA
Found at i:7310845 original size:6 final size:6
Alignment explanation
Indices: 7310836--7310869 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7310826 TCATCTTCAG
*
7310836 CATCAC CATCAC CATCAC CATCAC CCTCAC CATC
1 CATCAC CATCAC CATCAC CATCAC CATCAC CATC
7310870 TTCATCTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.18
Consensus pattern (6 bp):
CATCAC
Found at i:7313360 original size:118 final size:118
Alignment explanation
Indices: 7313152--7313388 Score: 456
Period size: 118 Copynumber: 2.0 Consensus size: 118
7313142 GATGCTCAGT
7313152 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
1 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
*
7313217 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTAGTTCTTTATCGCA
66 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
7313270 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
1 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
*
7313335 GCCGATTATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
66 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
7313388 T
1 T
7313389 TTTCCTTCTT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (118 bp):
TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
Found at i:7320387 original size:93 final size:93
Alignment explanation
Indices: 7320275--7320446 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
7320265 GCCCATAAGT
* *
7320275 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7320340 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
7320368 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7320433 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
7320447 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7320442 original size:46 final size:46
Alignment explanation
Indices: 7320267--7320442 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
7320257 TGTAACCCGC
* * * *
7320267 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
7320313 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
7320363 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
7320406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7320443 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:7320461 original size:46 final size:45
Alignment explanation
Indices: 7320318--7320461 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
7320308 CGCATCCATA
* *
7320318 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
7320366 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
7320411 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
7320457 AGTGA
1 AGTGA
7320462 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:7322424 original size:31 final size:31
Alignment explanation
Indices: 7322379--7322439 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
7322369 GTCACAAAAC
*
7322379 TATTCGTAAATTTTCATTTAAATTACTGAAT
1 TATTCGTAAATTTTCATTTAAATAACTGAAT
*
7322410 TATTCG-AAAGTTTTCATTTAAGTAACTGAA
1 TATTCGTAAA-TTTTCATTTAAATAACTGAA
7322440 CTGTTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (31 bp):
TATTCGTAAATTTTCATTTAAATAACTGAAT
Found at i:7322450 original size:31 final size:32
Alignment explanation
Indices: 7322376--7322463 Score: 85
Period size: 31 Copynumber: 2.8 Consensus size: 32
7322366 ACGGTCACAA
* *
7322376 AACTATTCGTAAA--TTTTCATTTAAATTACTG
1 AACTATTCG-AAAGGTTTTCATTTAAGTAACTG
*
7322407 AATTATTCGAAA-GTTTTCATTTAAGTAACTG
1 AACTATTCGAAAGGTTTTCATTTAAGTAACTG
* * *
7322438 AACTGTTTGAAAGGTTAT-ATTTAAGT
1 AACTATTCGAAAGGTTTTCATTTAAGT
7322464 CACTTAGTTG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
30 3 0.06
31 41 0.85
32 4 0.08
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.43
Consensus pattern (32 bp):
AACTATTCGAAAGGTTTTCATTTAAGTAACTG
Found at i:7327162 original size:16 final size:16
Alignment explanation
Indices: 7327141--7327174 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7327131 CCTTTCAAAT
* *
7327141 TTGAATTAATTTTGAG
1 TTGAATCAATTTCGAG
7327157 TTGAATCAATTTCGAG
1 TTGAATCAATTTCGAG
7327173 TT
1 TT
7327175 TAAATGGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (16 bp):
TTGAATCAATTTCGAG
Found at i:7327301 original size:43 final size:43
Alignment explanation
Indices: 7327202--7327384 Score: 233
Period size: 43 Copynumber: 4.3 Consensus size: 43
7327192 TTAAAAAAAA
* * * * ***
7327202 CGCCGCTAAAAGCCATGACTTTTAGCGACCTTTG-TAAAAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
* * * *
7327244 CGCAGCTAATAGTCATGGTTTTTAGCGACGTTTGTTGGGAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
*
7327287 CGCCTCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
*
7327330 CGCCGCTAAAAGTTATGGCTTTTAGCGGCGTTTGTTGGGAAAG
1 CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
*
7327373 TGCCGCTAAAAG
1 CGCCGCTAAAAG
7327385 CTAATTTTGA
Statistics
Matches: 123, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 28 0.23
43 95 0.77
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAG
Found at i:7327519 original size:32 final size:31
Alignment explanation
Indices: 7327442--7327523 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
7327432 ATTCCTGCAT
* * * *
7327442 TAAAATCCAACCAAATATAACACATATAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
* * *
7327473 TAAAATGCAGCCAAAAACAACAAATTTAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
7327504 TAAAAATACAACCAAAAACA
1 T-AAAATACAACCAAAAACA
7327524 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 26 0.62
32 16 0.38
ACGTcount: A:0.59, C:0.21, G:0.05, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATAGCA
Found at i:7327770 original size:21 final size:21
Alignment explanation
Indices: 7327746--7327800 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
7327736 TCTGCTGCCA
*
7327746 TCGCTGCTGCCTTTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
7327767 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
7327788 TCTCTGTTGCCTC
1 TCGCTGCTGCCTC
7327801 CGCTCTAAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.00, C:0.47, G:0.20, T:0.33
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:7328240 original size:13 final size:14
Alignment explanation
Indices: 7328215--7328243 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7328205 TGATGAATTG
7328215 AATTAAACAATTAT
1 AATTAAACAATTAT
7328229 AATTAAAC-ATTAT
1 AATTAAACAATTAT
7328242 AA
1 AA
7328244 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:7330726 original size:93 final size:93
Alignment explanation
Indices: 7330612--7330782 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
7330602 GCCCATAAGT
* * *
7330612 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7330677 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
7330705 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7330770 CGAGTTCGGATGC
66 CGAGTTCGGATGC
7330783 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7330798 original size:46 final size:46
Alignment explanation
Indices: 7330604--7330784 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
7330594 TGTAACCCGC
* * *
7330604 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
7330650 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
7330700 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
7330743 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
7330785 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:7336161 original size:9 final size:9
Alignment explanation
Indices: 7336126--7336207 Score: 69
Period size: 9 Copynumber: 9.1 Consensus size: 9
7336116 TATGTATTAC
*
7336126 GTAAGTTAA
1 GTAAGTTAT
7336135 GTAAGCTTA-
1 GTAAG-TTAT
7336144 GTAAGTTAT
1 GTAAGTTAT
7336153 GTAAGTTAT
1 GTAAGTTAT
* *
7336162 GTTA-TGAT
1 GTAAGTTAT
* *
7336170 ATACATTTAT
1 GTA-AGTTAT
*
7336180 GTAAGGTAT
1 GTAAGTTAT
*
7336189 GTAAGTTGT
1 GTAAGTTAT
7336198 GTAAGTTAT
1 GTAAGTTAT
7336207 G
1 G
7336208 ATATGATATA
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
8 7 0.12
9 43 0.74
10 8 0.14
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.41
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:7336292 original size:13 final size:13
Alignment explanation
Indices: 7336209--7336303 Score: 74
Period size: 13 Copynumber: 7.3 Consensus size: 13
7336199 TAAGTTATGA
7336209 TATGATATATATT
1 TATGATATATATT
*
7336222 TAAGATATATATT
1 TATGATATATATT
7336235 TATG-TAT-T-TT
1 TATGATATATATT
* * *
7336245 GTAAGGTATATAAGT
1 -TATGATATAT-ATT
7336260 TATG-TA-AGTTATT
1 TATGATATA--TATT
7336273 ATATGATATATATT
1 -TATGATATATATT
7336287 TATGATATATATT
1 TATGATATATATT
7336300 TATG
1 TATG
7336304 TATTATGTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 20
0.72 0.07 0.22
Matches are distributed among these distances:
10 2 0.03
11 4 0.06
12 7 0.11
13 37 0.56
14 12 0.18
15 3 0.05
16 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.51
Consensus pattern (13 bp):
TATGATATATATT
Found at i:7336324 original size:65 final size:65
Alignment explanation
Indices: 7336176--7336327 Score: 241
Period size: 65 Copynumber: 2.3 Consensus size: 65
7336166 TGATATACAT
*
7336176 TTATGTAAGGTATGTAAGTTGTGTAAGTTATGATATGATATATATTTAAGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGTAAGTTATGATATGATATATATTTAAGATATATATTTATGTA
* * * *
7336241 TTTTGTAAGGTATATAAGTTATGTAAGTTATTATATGATATATATTTATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGTAAGTTATGATATGATATATATTTAAGATATATATTTATGTA
* *
7336306 TTATGTAAGTTTTGTAAGTTAT
1 TTATGTAAGGTATGTAAGTTAT
7336328 TATATGATAT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 78 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.49
Consensus pattern (65 bp):
TTATGTAAGGTATGTAAGTTATGTAAGTTATGATATGATATATATTTAAGATATATATTTATGTA
Found at i:7337106 original size:89 final size:89
Alignment explanation
Indices: 7336924--7337118 Score: 221
Period size: 89 Copynumber: 2.2 Consensus size: 89
7336914 GGGCTTAATT
* * ** * * * * *
7336924 TTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTGA
1 TTTTTTTAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
** * * **
7336989 AAAAAAGTAGGGGTTTAATTACTT
66 AAAAAACAAGGAGCTTAATTACAA
7337013 TTTTTTTAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
1 TTTTTTTAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
*
7337078 AAAAGAACAAGGAGCTTAGTTA-AA
66 AAAA-AACAAGGAGCTTAATTACAA
7337102 TTTTTTTGAAAAAAATT
1 TTTTTTT-AAAAAAATT
7337119 AAGGGTTTTT
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
89 67 0.76
90 21 0.24
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (89 bp):
TTTTTTTAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
AAAAAACAAGGAGCTTAATTACAA
Found at i:7340538 original size:20 final size:19
Alignment explanation
Indices: 7340513--7340568 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
7340503 CTTCGGATGC
7340513 TTAGGGATTTGGGGGAAAAT
1 TTAGGGA-TTGGGGGAAAAT
*
7340533 TTAGGGATTAGGGG-AAAT
1 TTAGGGATTGGGGGAAAAT
* *
7340551 GTAGTGAATTGGGGGAAA
1 TTAG-GGATTGGGGGAAA
7340569 TCTGTTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 7 0.23
19 14 0.47
20 9 0.30
ACGTcount: A:0.32, C:0.00, G:0.41, T:0.27
Consensus pattern (19 bp):
TTAGGGATTGGGGGAAAAT
Found at i:7340962 original size:14 final size:14
Alignment explanation
Indices: 7340927--7340963 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
7340917 TATTATATCT
7340927 TAAATAATTTAATC
1 TAAATAATTTAATC
7340941 TAAA-AATTTAATC
1 TAAATAATTTAATC
7340954 TAAATAATTT
1 TAAATAATTT
7340964 CATTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:7341178 original size:14 final size:14
Alignment explanation
Indices: 7341139--7341169 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7341129 ATAAACCTTA
*
7341139 AACCCCTAACCCGT
1 AACCCATAACCCGT
7341153 AACCCATAACCCGT
1 AACCCATAACCCGT
7341167 AAC
1 AAC
7341170 TATTAACCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.45, G:0.06, T:0.13
Consensus pattern (14 bp):
AACCCATAACCCGT
Found at i:7341225 original size:8 final size:7
Alignment explanation
Indices: 7341201--7341325 Score: 80
Period size: 7 Copynumber: 17.9 Consensus size: 7
7341191 TCATAATTCA
7341201 TAAACCC
1 TAAACCC
7341208 TAAACCC
1 TAAACCC
7341215 TAAACCCC
1 TAAA-CCC
7341223 T-AACCC
1 TAAACCC
* *
7341229 TATACCA
1 TAAACCC
7341236 TAAACCC
1 TAAACCC
*
7341243 TAAAACCA
1 T-AAACCC
*
7341251 TAAACCT
1 TAAACCC
* *
7341258 TACA-CA
1 TAAACCC
7341264 TAAACCC
1 TAAACCC
7341271 TAAACCC
1 TAAACCC
7341278 -ATAACCC
1 TA-AACCC
*
7341285 GT-AACCT
1 -TAAACCC
*
7341292 TTAACCC
1 TAAACCC
*
7341299 TAAACCT
1 TAAACCC
7341306 TAAACCC
1 TAAACCC
*
7341313 -CAACCC
1 TAAACCC
7341319 TTAAACC
1 -TAAACC
7341326 ATAATTCTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
6 15 0.16
7 62 0.68
8 14 0.15
ACGTcount: A:0.42, C:0.39, G:0.01, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:7341239 original size:28 final size:28
Alignment explanation
Indices: 7341208--7341304 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
7341198 TCATAAACCC
*
7341208 TAAACCCTAAACCCCTAACCCTATACCA
1 TAAACCCTAAACCCATAACCCTATACCA
* *
7341236 TAAACCCTAAAACCATAAACCT-TACACA
1 TAAACCCTAAACCCATAACCCTATAC-CA
*
7341264 TAAACCCTAAACCCATAACCCGTA-ACCT
1 TAAACCCTAAACCCATAACCC-TATACCA
*
7341292 TTAACCCTAAACC
1 TAAACCCTAAACC
7341305 TTAAACCCCA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
27 3 0.05
28 53 0.90
29 3 0.05
ACGTcount: A:0.42, C:0.38, G:0.01, T:0.19
Consensus pattern (28 bp):
TAAACCCTAAACCCATAACCCTATACCA
Found at i:7341611 original size:14 final size:14
Alignment explanation
Indices: 7341594--7341632 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
7341584 AACCCCTGAC
7341594 CCTTAAACCATAAT
1 CCTTAAACCATAAT
7341608 CCTTAAACCCCATAAT
1 CCTTAAA--CCATAAT
*
7341624 CCCTAAACC
1 CCTTAAACC
7341633 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.23
Consensus pattern (14 bp):
CCTTAAACCATAAT
Found at i:7341622 original size:16 final size:16
Alignment explanation
Indices: 7341601--7341632 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7341591 GACCCTTAAA
*
7341601 CCATAATCCTTAAACC
1 CCATAATCCCTAAACC
7341617 CCATAATCCCTAAACC
1 CCATAATCCCTAAACC
7341633 TTAAAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.22
Consensus pattern (16 bp):
CCATAATCCCTAAACC
Found at i:7341853 original size:24 final size:23
Alignment explanation
Indices: 7341818--7341869 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
7341808 TTTAAAATTA
7341818 TTTTAAATAATAGTATTT-TATCAT
1 TTTTAAATAATA-TATTTCTAT-AT
*
7341842 TTTTAACA-AATATTTTTCTATAT
1 TTTTAA-ATAATATATTTCTATAT
7341865 TTTTA
1 TTTTA
7341870 CTTTCAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 11 0.44
24 13 0.52
25 1 0.04
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTTAAATAATATATTTCTATAT
Found at i:7350847 original size:119 final size:119
Alignment explanation
Indices: 7350636--7350874 Score: 433
Period size: 119 Copynumber: 2.0 Consensus size: 119
7350626 AGTGTACTTA
* * *
7350636 AATTTATGTTTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAATTCAAATAACAAAT
1 AATTTAAGTCTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAACTCAAATAACAAAT
7350701 TTATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGG
66 TTATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGG
*
7350755 AATTTAAGTCTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAACTCAAATGACAAAT
1 AATTTAAGTCTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAACTCAAATAACAAAT
*
7350820 TTATTAATGCAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGG
66 TTATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGG
7350874 A
1 A
7350875 GTTTTCTTGA
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 115 1.00
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.27
Consensus pattern (119 bp):
AATTTAAGTCTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAACTCAAATAACAAAT
TTATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGG
Found at i:7356386 original size:76 final size:77
Alignment explanation
Indices: 7356280--7356494 Score: 344
Period size: 76 Copynumber: 2.8 Consensus size: 77
7356270 TTTCTGTAAA
* * * *
7356280 TATTCAACTAAATCAATAATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAGTAAC
1 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATAAC
7356345 -TTTTTTTCAAT
66 ATTTTTTTCAAT
7356356 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAAT-ATATAATTAAAAACTTAAATAAC
1 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATAAC
*
7356420 ATTTTTTTTAAT
66 ATTTTTTTCAAT
* * *
7356432 TATTTACCTAAATGAATGGTAAATAAAATATAATTATAAATAATATAACTAAAAACTTAAATA
1 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATA
7356495 GCATATTGAA
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
75 22 0.17
76 87 0.67
77 20 0.16
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (77 bp):
TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATAAC
ATTTTTTTCAAT
Found at i:7362386 original size:39 final size:39
Alignment explanation
Indices: 7362332--7362409 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
7362322 AAAGAAAAGG
7362332 GAAATTTGGTCATTGAGAACTGATAATGCGCTGAATTGA
1 GAAATTTGGTCATTGAGAACTGATAATGCGCTGAATTGA
*
7362371 GAAATTTGTTCATTGAGAACTGATAATGCGCTGAATTGA
1 GAAATTTGGTCATTGAGAACTGATAATGCGCTGAATTGA
7362410 CATATTTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.32
Consensus pattern (39 bp):
GAAATTTGGTCATTGAGAACTGATAATGCGCTGAATTGA
Found at i:7364750 original size:30 final size:30
Alignment explanation
Indices: 7364682--7364750 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
7364672 CTAATTGTTG
*
7364682 AAAATTCAATTTAATCTATAAAATCAAATC
1 AAAATTCAATTTAATCTATAAAATCAAATA
* * * *
7364712 AAATTTCAATTTAGTCT-TGAAATTAAATTA
1 AAAATTCAATTTAATCTATAAAATCAAA-TA
7364742 AAAATTCAA
1 AAAATTCAA
7364751 ACACAAAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAATTCAATTTAATCTATAAAATCAAATA
Found at i:7364975 original size:42 final size:42
Alignment explanation
Indices: 7364882--7365027 Score: 170
Period size: 43 Copynumber: 3.4 Consensus size: 42
7364872 TAGAAAATGC
* * * * *
7364882 CGCTATAGAATATAACCTTTAGTGGCGCTTTTTTCACAAAC-A
1 CGCTATAGAACATGACCTTTAGCGGCTC-TTTTCCACAAACGA
7364924 CCGCTATAGAACATGACCTTTAGCGGCTCTTTTCCACAAACGA
1 -CGCTATAGAACATGACCTTTAGCGGCTCTTTTCCACAAACGA
* * *
7364967 CGTTATAGAACAAGACCTTTAGCGGCAT-TTTTCCCACAAACGG
1 CGCTATAGAACATGACCTTTAGCGGC-TCTTTT-CCACAAACGA
7365010 CGCTATAGAACATGACCT
1 CGCTATAGAACATGACCT
7365028 ACGCCACTAT
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
42 39 0.43
43 51 0.57
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
CGCTATAGAACATGACCTTTAGCGGCTCTTTTCCACAAACGA
Found at i:7365070 original size:150 final size:150
Alignment explanation
Indices: 7364896--7365174 Score: 332
Period size: 150 Copynumber: 1.9 Consensus size: 150
7364886 ATAGAATATA
* * ** *
7364896 ACCTTTAGTGGCGCTTTTTTCACAAACACCGCTATAGAACATGACCTTTAGCGGCTCTTTT-CCA
1 ACCTTTAGTGGCGCTTTTTTCACAAACACCGCTATAGAACAAGACATTTAGCAACACTTTTCCCA
* ** * *
7364960 CAAACGA-CGTTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGCGCTATAGAACATG
66 CAAA-AACCGTTATAGAACAAGACCTTTAGCGGC-GCTCTCCCACAAACGGAGCTATAGAACATG
7365024 ACCTACGCCACTATAAAACAAG
129 ACCTACGCCACTATAAAACAAG
** * *
7365046 ACCTTTAGT-G-GCTTTTTTCCCACAAATGCTGCTATAGAATAAGACATTTAGCAACACTTTTCC
1 ACCTTTAGTGGCGCTTTTTT--CACAAACACCGCTATAGAACAAGACATTTAGCAACACTTTTCC
* * * *
7365109 CACAAAAACCGTTGTAGAACATGACCTTTAGCGGCGCTCTCCCACAAATGTAGCTATAGAACATG
64 CACAAAAACCGTTATAGAACAAGACCTTTAGCGGCGCTCTCCCACAAACGGAGCTATAGAACATG
7365174 A
129 A
7365175 TCTTTAGCGG
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
148 8 0.07
149 1 0.01
150 67 0.63
151 31 0.29
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (150 bp):
ACCTTTAGTGGCGCTTTTTTCACAAACACCGCTATAGAACAAGACATTTAGCAACACTTTTCCCA
CAAAAACCGTTATAGAACAAGACCTTTAGCGGCGCTCTCCCACAAACGGAGCTATAGAACATGAC
CTACGCCACTATAAAACAAG
Found at i:7365127 original size:108 final size:107
Alignment explanation
Indices: 7364927--7365135 Score: 249
Period size: 108 Copynumber: 1.9 Consensus size: 107
7364917 ACAAACACCG
* * * * **
7364927 CTATAGAACATGACCTTTAGCGGCTCTTTTCCACAAACGACGTTATAGAACAAGACCTTTAGCGG
1 CTATAAAACAAGACCTTTAGCGGCTCTTTTCCACAAACGACGCTATAGAACAAGACATTTAGCAA
* ***
7364992 CATTTTTCCCACAAACGGCGCTATAGAACATGACCTACGCCA
66 CACTTTTCCCACAAAAACCGCTATAGAACATGACCTACGCCA
* * * *
7365034 CTATAAAACAAGACCTTTAGTGGCTTTTTTCCCACAAATG-CTGCTATAGAATAAGACATTTAGC
1 CTATAAAACAAGACCTTTAGCGGCTCTTTT-CCACAAACGAC-GCTATAGAACAAGACATTTAGC
* *
7365098 AACACTTTTCCCACAAAAACCGTTGTAGAACATGACCT
64 AACACTTTTCCCACAAAAACCGCTATAGAACATGACCT
7365136 TTAGCGGCGC
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
107 27 0.32
108 57 0.68
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (107 bp):
CTATAAAACAAGACCTTTAGCGGCTCTTTTCCACAAACGACGCTATAGAACAAGACATTTAGCAA
CACTTTTCCCACAAAAACCGCTATAGAACATGACCTACGCCA
Found at i:7365169 original size:42 final size:42
Alignment explanation
Indices: 7365123--7365306 Score: 162
Period size: 42 Copynumber: 4.4 Consensus size: 42
7365113 AAAACCGTTG
*
7365123 TAGAACATGACCTTTAGCGGCGCTCTCCCACAAATG-TAGCTA
1 TAGAACATGACCTTTAGCGGCGCTCTCCCACAAACGCT-GCTA
* *
7365165 TAGAACATGATCTTTAGCGGCGCTTTTCCCACAAACGCTGCTA
1 TAGAACATGACCTTTAGCGGCGC-TCTCCCACAAACGCTGCTA
* * * * **
7365208 TAGAACA-GACCTTTAGTGGCGCTTTTCCGAAAAACGCCACTA
1 TAGAACATGACCTTTAGCGGCGC-TCTCCCACAAACGCTGCTA
* * * *
7365250 TAAAACA-GACCTTTAGCGGCGTTTTTCCCAAAAACGCCT-CTA
1 TAGAACATGACCTTTAGCGGCG-CTCTCCCACAAACG-CTGCTA
*
7365292 AAGAACATGA-CTTTA
1 TAGAACATGACCTTTA
7365307 AAAAAATATT
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
42 95 0.79
43 25 0.21
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (42 bp):
TAGAACATGACCTTTAGCGGCGCTCTCCCACAAACGCTGCTA
Found at i:7384153 original size:35 final size:35
Alignment explanation
Indices: 7384107--7384176 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
7384097 TTTTTTCTTT
7384107 TTATTCTGTCACGG-TTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTT-GAGTCGTGGGCACGACGC
*
7384142 TTATTCTGTCACGGCTTGAGTTGTGGGCACGACGC
1 TTATTCTGTCACGGCTTGAGTCGTGGGCACGACGC
7384177 AGGGCACGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 31 0.94
36 2 0.06
ACGTcount: A:0.14, C:0.23, G:0.33, T:0.30
Consensus pattern (35 bp):
TTATTCTGTCACGGCTTGAGTCGTGGGCACGACGC
Found at i:7386032 original size:29 final size:29
Alignment explanation
Indices: 7385999--7386057 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7385989 GGTTATTTTA
7385999 CCTTCCGCCTAACTCAATAACCACATGGG
1 CCTTCCGCCTAACTCAATAACCACATGGG
7386028 CCTTCCGCCTAACTCAATAACCACATGGG
1 CCTTCCGCCTAACTCAATAACCACATGGG
7386057 C
1 C
7386058 TGAACTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.39, G:0.14, T:0.20
Consensus pattern (29 bp):
CCTTCCGCCTAACTCAATAACCACATGGG
Found at i:7391685 original size:13 final size:13
Alignment explanation
Indices: 7391666--7391699 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
7391656 AGATAATGTT
7391666 CAAAAAAAAAG-A
1 CAAAAAAAAAGCA
7391678 CAAAAAAAAAGCA
1 CAAAAAAAAAGCA
7391691 CAAAAAAAA
1 CAAAAAAAA
7391700 GAAAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.82, C:0.12, G:0.06, T:0.00
Consensus pattern (13 bp):
CAAAAAAAAAGCA
Found at i:7391737 original size:13 final size:13
Alignment explanation
Indices: 7391667--7391753 Score: 54
Period size: 13 Copynumber: 6.8 Consensus size: 13
7391657 GATAATGTTC
*
7391667 AAAAAAAAAG-AC
1 AAAAAAAAAGAAA
*
7391679 AAAAAAAAAG-CA
1 AAAAAAAAAGAAA
*
7391691 CAAAAAAAAGAAA
1 AAAAAAAAAGAAA
* ***
7391704 AAATAATTCGAAA
1 AAAAAAAAAGAAA
7391717 AAAGAAAAAA-AAA
1 AAA-AAAAAAGAAA
**
7391730 GAAAAAAAAAGTTA
1 -AAAAAAAAAGAAA
7391744 AAAAAAAAAG
1 AAAAAAAAAG
7391754 GTTTGATGAT
Statistics
Matches: 56, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
12 19 0.34
13 31 0.55
14 6 0.11
ACGTcount: A:0.80, C:0.05, G:0.09, T:0.06
Consensus pattern (13 bp):
AAAAAAAAAGAAA
Found at i:7391746 original size:12 final size:10
Alignment explanation
Indices: 7391667--7391751 Score: 71
Period size: 10 Copynumber: 7.9 Consensus size: 10
7391657 GATAATGTTC
7391667 AAAAAAAAAG
1 AAAAAAAAAG
7391677 ACAAAAAAAAAG
1 --AAAAAAAAAG
7391689 CACAAAAAAAAG
1 -A-AAAAAAAAG
* *
7391701 AAAAAATAAT
1 AAAAAAAAAG
***
7391711 TCGAAAAAAG
1 AAAAAAAAAG
7391721 AAAAAAAAAG
1 AAAAAAAAAG
7391731 AAAAAAAAAG
1 AAAAAAAAAG
7391741 TTAAAAAAAAA
1 --AAAAAAAAA
7391752 AGGTTTGATG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
10 29 0.48
11 3 0.05
12 28 0.47
ACGTcount: A:0.81, C:0.05, G:0.08, T:0.06
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:7392523 original size:35 final size:35
Alignment explanation
Indices: 7392477--7392547 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
7392467 TTTTTTCTTT
*
7392477 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
7392512 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
7392547 T
1 T
7392548 GGGCACGACG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Found at i:7400115 original size:11 final size:11
Alignment explanation
Indices: 7400101--7400149 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
7400091 AGATAAATAT
7400101 TATTTTATTAA
1 TATTTTATTAA
*
7400112 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
7400125 TATTTTATTAT
1 TATTTTATTAA
7400136 TATTTTATTAA
1 TATTTTATTAA
7400147 TAT
1 TAT
7400150 ATAAAGAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 19 0.59
12 6 0.19
13 7 0.22
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7400128 original size:24 final size:24
Alignment explanation
Indices: 7400101--7400151 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7400091 AGATAAATAT
7400101 TATTTTATTAATATTTTAATAAGA
1 TATTTTATTAATATTTTAATAAGA
* * *
7400125 TATTTTATTATTATTTTATTAATA
1 TATTTTATTAATATTTTAATAAGA
7400149 TAT
1 TAT
7400152 AAAGAAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTTTATTAATATTTTAATAAGA
Found at i:7401999 original size:46 final size:46
Alignment explanation
Indices: 7401947--7402251 Score: 407
Period size: 46 Copynumber: 6.6 Consensus size: 46
7401937 GCTCTCTGAA
** ** *
7401947 ATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
*
7401993 ATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATAGCAACATGAC
1 ATGAAATGA-ATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
* * *
7402039 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
** * *
7402085 GGGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
* * *
7402131 ATGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
*
7402177 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
* *
7402223 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAATAAGACCATGGTTGAAAGA
7402252 CACTATGGCA
Statistics
Matches: 229, Mismatches: 27, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
45 1 0.00
46 227 0.99
47 1 0.00
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
Found at i:7402197 original size:138 final size:138
Alignment explanation
Indices: 7401957--7402251 Score: 455
Period size: 138 Copynumber: 2.1 Consensus size: 138
7401947 ATGAAATGTG
* * **
7401957 TAAGACCATGGTTGAAAGATACCACGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
* * *
7402022 TACCATAGCAACATGACATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGACGG
66 TACCATAGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
*
7402087 GAAATGAA
131 AAAATGAA
* * *
7402095 TAAGACCATGGTTGAAAGATACCATAGCAGCGTGACATGAAATAAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
* *
7402160 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
66 TACCATAGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
*
7402225 AAAATGAG
131 AAAATGAA
*
7402233 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
7402252 CACTATGGCA
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 142 1.00
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.19
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
TACCATAGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
AAAATGAA
Found at i:7411431 original size:20 final size:19
Alignment explanation
Indices: 7411401--7411438 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7411391 TAATATTTTT
*
7411401 TAATAATAATAATTATATC
1 TAATAATAATAAATATATC
7411420 TAATATATAATAAATATAT
1 TAATA-ATAATAAATATAT
7411439 TTAAACTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAATAATAATAAATATATC
Found at i:7418771 original size:18 final size:18
Alignment explanation
Indices: 7418733--7418771 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7418723 TTTATTTTAA
*
7418733 TATTATATTAAAAACTTT
1 TATTATATTAAAAACTGT
7418751 TATTATTATTAAAAA-TGT
1 TATTA-TATTAAAAACTGT
7418769 TAT
1 TAT
7418772 GTGTCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TATTATATTAAAAACTGT
Found at i:7419537 original size:27 final size:29
Alignment explanation
Indices: 7419507--7419563 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
7419497 ATTATTAGAT
7419507 TAATAATT-TAATATAAAT-ATAAATATA
1 TAATAATTATAATATAAATAATAAATATA
*
7419534 TAATAATTAGTAATATATATAATAAATATA
1 TAATAATTA-TAATATAAATAATAAATATA
7419564 ATATTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 8 0.31
29 9 0.35
30 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (29 bp):
TAATAATTATAATATAAATAATAAATATA
Found at i:7419551 original size:19 final size:18
Alignment explanation
Indices: 7419519--7419567 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
7419509 ATAATTTAAT
7419519 ATAAATATAA-ATATATA
1 ATAAATATAATATATATA
*
7419536 ATAATTAGTAATATATATA
1 ATAAATA-TAATATATATA
7419555 ATAAATATAATAT
1 ATAAATATAATAT
7419568 TTTTATAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 6 0.21
18 9 0.32
19 13 0.46
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
ATAAATATAATATATATA
Found at i:7425085 original size:35 final size:36
Alignment explanation
Indices: 7425019--7425093 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 36
7425009 TGTAACGTCA
* *
7425019 ATAAATAATTTAAAAATTAAAAAAAATTATAAAGTTC
1 ATAAATAATTTAAAAA-TAAAAAAAAGTATAAAGTAC
7425056 ATAAA-AATTTAAAAA-AAAAAAAGAGTATAAAGTAC
1 ATAAATAATTTAAAAATAAAAAAA-AGTATAAAGTAC
7425091 ATA
1 ATA
7425094 TGGATTGCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 7 0.20
35 13 0.37
36 10 0.29
37 5 0.14
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (36 bp):
ATAAATAATTTAAAAATAAAAAAAAGTATAAAGTAC
Found at i:7435111 original size:28 final size:28
Alignment explanation
Indices: 7435052--7435114 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
7435042 TAGTGATAGT
* *
7435052 AATAATAATGTTAAAAAAGATATAATAT
1 AATAATAATATTAAAAAAGATATAATAA
* *
7435080 AATAGTAATATTAAAATAAGATA-ATTAA
1 AATAATAATATTAAAA-AAGATATAATAA
7435108 AATAATA
1 AATAATA
7435115 CTATACCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (28 bp):
AATAATAATATTAAAAAAGATATAATAA
Found at i:7437161 original size:20 final size:20
Alignment explanation
Indices: 7437136--7437180 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
7437126 TCATGTTAAT
* * *
7437136 AAATATTTTAAAAATTATAA
1 AAATATTTCAAAAAATAAAA
7437156 AAATA-TTCAAAAAATAAAA
1 AAATATTTCAAAAAATAAAA
7437175 AAATAT
1 AAATAT
7437181 AAAAAGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATATTTCAAAAAATAAAA
Found at i:7437195 original size:19 final size:18
Alignment explanation
Indices: 7437144--7437208 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
7437134 ATAAATATTT
7437144 TAAAAATT-ATAAAAATA
1 TAAAAATTAATAAAAATA
*
7437161 TTCAAAAAATAA-AAAAATA
1 -T-AAAAATTAATAAAAATA
*
7437180 TAAAAAGTTAATAAAAATT
1 TAAAAA-TTAATAAAAATA
7437199 TAATAAATTA
1 TAA-AAATTA
7437209 GCATGAAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 5 0.13
18 5 0.13
19 25 0.64
20 4 0.10
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAAAATTAATAAAAATA
Found at i:7439049 original size:19 final size:20
Alignment explanation
Indices: 7439021--7439059 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7439011 TCCCATTATT
7439021 TATTTATTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
*
7439040 TATTTGTTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
7439060 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:7439077 original size:25 final size:23
Alignment explanation
Indices: 7439040--7439085 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
7439030 TTTGTTTTAA
*
7439040 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
7439063 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
7439086 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:7443824 original size:21 final size:21
Alignment explanation
Indices: 7443798--7443847 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7443788 TAAAATATAG
7443798 TTACTATAG-AGATGAGATTAA
1 TTACTATAGCA-ATGAGATTAA
*
7443819 TTACTACAGCAATGAGATTAA
1 TTACTATAGCAATGAGATTAA
*
7443840 GTACTATA
1 TTACTATA
7443848 ACGGTGAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (21 bp):
TTACTATAGCAATGAGATTAA
Found at i:7457803 original size:2 final size:2
Alignment explanation
Indices: 7457796--7457822 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7457786 CTTTTAGGTA
7457796 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7457823 GACATGTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7459266 original size:20 final size:20
Alignment explanation
Indices: 7459223--7459259 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7459213 AGCAGGGAAA
7459223 AAAGAAAGAAAGGAGAAAAG
1 AAAGAAAGAAAGGAGAAAAG
7459243 AAAG-AAGAAAGG-GAAAA
1 AAAGAAAGAAAGGAGAAAA
7459260 TTGAAAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (20 bp):
AAAGAAAGAAAGGAGAAAAG
Found at i:7460804 original size:12 final size:12
Alignment explanation
Indices: 7460787--7460811 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7460777 GCTGACTACT
7460787 GTTACTGTTACC
1 GTTACTGTTACC
7460799 GTTACTGTTACC
1 GTTACTGTTACC
7460811 G
1 G
7460812 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:7461060 original size:18 final size:18
Alignment explanation
Indices: 7461039--7461076 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7461029 TAGCTGATTA
*
7461039 TTACTGAATAATTTACTG
1 TTACTGAATAATTGACTG
*
7461057 TTACTGGATAATTGACTG
1 TTACTGAATAATTGACTG
7461075 TT
1 TT
7461077 TGTAACACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.45
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:7462156 original size:48 final size:48
Alignment explanation
Indices: 7462102--7462764 Score: 1021
Period size: 48 Copynumber: 13.9 Consensus size: 48
7462092 ACACATTTCC
*
7462102 TACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
7462150 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
7462200 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
7462248 TACATATATTTCACATTAGCCA-----C-ATA-TACATAT-C---TCAT-A
1 TAC--ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC-TCA
*
7462287 T--ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
7462333 TACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
7462381 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
7462429 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
7462477 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
7462527 TATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
7462577 TATATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
7462625 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
7462673 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
7462721 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
7462765 ATTTATCTTG
Statistics
Matches: 577, Mismatches: 17, Indels: 42
0.91 0.03 0.07
Matches are distributed among these distances:
35 17 0.03
39 4 0.01
40 2 0.00
41 2 0.00
42 7 0.01
43 7 0.01
44 2 0.00
45 2 0.00
46 4 0.01
48 372 0.64
50 158 0.27
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:7462297 original size:35 final size:36
Alignment explanation
Indices: 7462230--7462304 Score: 125
Period size: 35 Copynumber: 2.1 Consensus size: 36
7462220 TTCGGCTTTA
*
7462230 CCACATATACGTATCTCATACATATATTTCACATTAG
1 CCACATATACATATCTCATA-ATATATTTCACATTAG
7462267 CCACATATACATATCTCAT-ATATATTTCACATTAG
1 CCACATATACATATCTCATAATATATTTCACATTAG
7462302 CCA
1 CCA
7462305 TTCGGCTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
35 19 0.51
37 18 0.49
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.35
Consensus pattern (36 bp):
CCACATATACATATCTCATAATATATTTCACATTAG
Found at i:7462649 original size:244 final size:239
Alignment explanation
Indices: 7462102--7462764 Score: 1069
Period size: 244 Copynumber: 2.8 Consensus size: 239
7462092 ACACATTTCC
*
7462102 TACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
* *
7462167 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACC
* * *
7462232 ACATATACGTATCTCATACATA--T---AT-----TTC-ACATTAGCCACATATACATATCTCAT
129 ACATATACATATCTCATACATATTTCACATAGCCATTCGGCTTTA-CCACATATACATATCTCAT
*
7462286 ATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
193 ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
7462333 TACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
7462398 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
7462463 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
131 ATATACATATCTCATACATATTTCACA-TAGCCATTCGGCTTTACCACATATACATATCTC--AT
7462528 ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
193 ATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
7462577 TATATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
7462642 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
7462707 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
131 ATATACATATCTCATACATATTTCACA-TAGCCATTCGGCTTTACCACATATACATAT
7462765 ATTTATCTTG
Statistics
Matches: 402, Mismatches: 14, Indels: 19
0.92 0.03 0.04
Matches are distributed among these distances:
229 52 0.13
231 93 0.23
234 1 0.00
235 1 0.00
240 20 0.05
241 4 0.01
242 47 0.12
244 184 0.46
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (239 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
ATATACATATCTCATACATATTTCACATAGCCATTCGGCTTTACCACATATACATATCTCATATA
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:7464585 original size:2 final size:2
Alignment explanation
Indices: 7464578--7464613 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7464568 ACATTCGGCA
7464578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7464614 TAATGACTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7465661 original size:19 final size:17
Alignment explanation
Indices: 7465637--7465682 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7465627 GAATGACTGC
7465637 TACTGAATAACTTAATTGT
1 TACTGAATAAC-TAATT-T
* *
7465656 TACTGAATATCTGATTT
1 TACTGAATAACTAATTT
7465673 TACTGAATAA
1 TACTGAATAA
7465683 TTGGCTGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.42
18 4 0.17
19 10 0.42
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (17 bp):
TACTGAATAACTAATTT
Found at i:7465778 original size:36 final size:36
Alignment explanation
Indices: 7465542--7465793 Score: 136
Period size: 36 Copynumber: 6.8 Consensus size: 36
7465532 GGGCTGTCAC
* * *
7465542 ACTGTTACTGGAT-ATTAGACTGTTACGGAATAACTG
1 ACTGTTACTGAATAATT-GATTGTTACTGAATAACTG
* * ** *
7465578 AATATTACTGAATAATTGATCATTAATGAATAACTG
1 ACTGTTACTGAATAATTGATTGTTACTGAATAACTG
* * * * *
7465614 ATTGTCACTGAATGAA-TGACTGCTACTGAATAACTTA
1 ACTGTTACTGAAT-AATTGATTGTTACTGAATAAC-TG
* *
7465651 ATTGTTACTGAAT-ATCTGATT-TTACTGAATAATTG
1 ACTGTTACTGAATAAT-TGATTGTTACTGAATAACTG
* * *
7465686 GCTGTTACTGGATAACCAATTAATTGATCGATACTGAATAACTG
1 ACTGTTACT-G------AA-TAATTGATTGTTACTGAATAACTG
** * * *
7465730 GTTATTATTGAATAATTGATTGTTACCGAATAACTG
1 ACTGTTACTGAATAATTGATTGTTACTGAATAACTG
* *
7465766 ACTGTTACTGAATAAATAATTGTT-CTGA
1 ACTGTTACTGAATAATTGATTGTTACTGA
7465794 GAGTTAATGA
Statistics
Matches: 161, Mismatches: 40, Indels: 31
0.69 0.17 0.13
Matches are distributed among these distances:
35 12 0.07
36 97 0.60
37 24 0.15
42 2 0.01
43 6 0.04
44 20 0.12
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (36 bp):
ACTGTTACTGAATAATTGATTGTTACTGAATAACTG
Found at i:7465789 original size:18 final size:18
Alignment explanation
Indices: 7465562--7465793 Score: 90
Period size: 18 Copynumber: 12.5 Consensus size: 18
7465552 GATATTAGAC
* * *
7465562 TGTTACGGAATAACTGAA
1 TGTTACTGAATAAATGAT
* *
7465580 TATTACTGAATAATTGAT
1 TGTTACTGAATAAATGAT
** * *
7465598 CATTAATGAATAACTGAT
1 TGTTACTGAATAAATGAT
* * *
7465616 TGTCACTGAATGAATGAC
1 TGTTACTGAATAAATGAT
* * *
7465634 TGCTACTGAATAACTTAAT
1 TGTTACTGAATAA-ATGAT
**
7465653 TGTTACTGAATATCTGAT
1 TGTTACTGAATAAATGAT
* **
7465671 T-TTACTGAATAATTGGC
1 TGTTACTGAATAAATGAT
* *
7465688 TGTTACTGGATAACCAATTAAT
1 TGTTACTGAAT-A--AA-TGAT
* *
7465710 TGATCGATACTGAATAACTGGT
1 TG-T---TACTGAATAAATGAT
* * *
7465732 TATTATTGAATAATTGAT
1 TGTTACTGAATAAATGAT
* * *
7465750 TGTTACCGAATAACTGAC
1 TGTTACTGAATAAATGAT
*
7465768 TGTTACTGAATAAATAAT
1 TGTTACTGAATAAATGAT
7465786 TGTT-CTGA
1 TGTTACTGA
7465794 GAGTTAATGA
Statistics
Matches: 154, Mismatches: 50, Indels: 21
0.68 0.22 0.09
Matches are distributed among these distances:
17 17 0.11
18 105 0.68
19 14 0.09
21 2 0.01
22 6 0.04
23 2 0.01
25 1 0.01
26 7 0.05
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TGTTACTGAATAAATGAT
Found at i:7466707 original size:16 final size:17
Alignment explanation
Indices: 7466686--7466720 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7466676 AATTAATTTA
*
7466686 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
7466702 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
7466719 AA
1 AA
7466721 CACAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:7470193 original size:21 final size:21
Alignment explanation
Indices: 7470169--7470234 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 21
7470159 TAAAAATTTT
7470169 AAATTAATTAATTTTAACATA
1 AAATTAATTAATTTTAACATA
* *
7470190 AAA-TATTTATTATTTTAACGATT
1 AAATTAATTA--ATTTTAAC-ATA
*
7470213 AAATTAATT-TTTTTAA-ATA
1 AAATTAATTAATTTTAACATA
7470232 AAA
1 AAA
7470235 AAATGGAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
19 5 0.14
20 5 0.14
21 9 0.25
22 8 0.22
23 5 0.14
24 4 0.11
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (21 bp):
AAATTAATTAATTTTAACATA
Found at i:7470759 original size:15 final size:14
Alignment explanation
Indices: 7470739--7470768 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7470729 ATTGGGTGGC
7470739 TTTCTTTTTTCTTTT
1 TTTCTTTTTT-TTTT
7470754 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
7470768 T
1 T
7470769 ATGATATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:7475271 original size:24 final size:24
Alignment explanation
Indices: 7475240--7475312 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
7475230 CTGAAAAGTT
7475240 GAACAGTAAGCTCATACGAGCTGA
1 GAACAGTAAGCTCATACGAGCTGA
* *
7475264 GAACAGTAAGCTCTTATGAGCTGA
1 GAACAGTAAGCTCATACGAGCTGA
* *
7475288 TATATCGGTAAGCTCATACGAGCTG
1 GA-A-CAGTAAGCTCATACGAGCTG
7475313 TGGTGAATCC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 23 0.56
25 1 0.02
26 17 0.41
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (24 bp):
GAACAGTAAGCTCATACGAGCTGA
Found at i:7476068 original size:17 final size:17
Alignment explanation
Indices: 7476038--7476072 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7476028 AGAATACGAA
7476038 ATAACAATCACAAAAAC
1 ATAACAATCACAAAAAC
7476055 ATAA-AATCATCAAAAAC
1 ATAACAATCA-CAAAAAC
7476072 A
1 A
7476073 GAGCTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.20, G:0.00, T:0.14
Consensus pattern (17 bp):
ATAACAATCACAAAAAC
Found at i:7477902 original size:19 final size:19
Alignment explanation
Indices: 7477878--7477919 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
7477868 AATCGTAACA
7477878 CAAAAAGGATATTTAAACC
1 CAAAAAGGATATTTAAACC
7477897 CAAAAAGGATATTTAAACC
1 CAAAAAGGATATTTAAACC
7477916 CAAA
1 CAAA
7477920 CCTCACTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.55, C:0.17, G:0.10, T:0.19
Consensus pattern (19 bp):
CAAAAAGGATATTTAAACC
Found at i:7483103 original size:13 final size:13
Alignment explanation
Indices: 7483085--7483118 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
7483075 TAAATAATAA
7483085 TAAAATATCTTAT
1 TAAAATATCTTAT
7483098 TAAAATATCTTAT
1 TAAAATATCTTAT
7483111 TAAAATAT
1 TAAAATAT
7483119 TAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAAATATCTTAT
Found at i:7484613 original size:22 final size:22
Alignment explanation
Indices: 7484587--7484631 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7484577 CACAAAATGG
7484587 AAACTATAACTTTC-TAATGGGA
1 AAACT-TAACTTTCTTAATGGGA
* *
7484609 AAACTTTACTTTCTTTATGGGA
1 AAACTTAACTTTCTTAATGGGA
7484631 A
1 A
7484632 CCAAAACCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
AAACTTAACTTTCTTAATGGGA
Found at i:7488369 original size:21 final size:20
Alignment explanation
Indices: 7488335--7488373 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7488325 TTTTAAACAT
*
7488335 AAATTTTAAAATTATAAAAA
1 AAATTTAAAAATTATAAAAA
7488355 AAATTTAAAACATTATAAA
1 AAATTTAAAA-ATTATAAA
7488374 TATTATTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATTTAAAAATTATAAAAA
Found at i:7489229 original size:96 final size:96
Alignment explanation
Indices: 7489065--7489253 Score: 360
Period size: 96 Copynumber: 2.0 Consensus size: 96
7489055 ACTAGTCTAT
*
7489065 ACATATGATATATTCTCTAGTATATACCACTAAGATTGACTATACAAATAAGCAAATTTCATACT
1 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
7489130 CTTTAAGCCTTGTCAGCAATGATATGATAAC
66 CTTTAAGCCTTGTCAGCAATGATATGATAAC
7489161 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
1 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
*
7489226 CTTTAAGCCTTGTTAGCAATGATATGAT
66 CTTTAAGCCTTGTCAGCAATGATATGAT
7489254 TTTAAAAAGG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (96 bp):
ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
CTTTAAGCCTTGTCAGCAATGATATGATAAC
Found at i:7492549 original size:64 final size:64
Alignment explanation
Indices: 7492470--7492597 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
7492460 CTGTTAGAAG
*
7492470 TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTTAACCAGAGATGGC
1 TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
* *
7492534 TTAGAACAAAGCATGTCCTAGATTAATTATTTGCAATCCGGATATATCCTCAACCAGATATGGC
1 TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
7492598 CAATTCATTT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (64 bp):
TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
Found at i:7493854 original size:38 final size:37
Alignment explanation
Indices: 7493804--7493875 Score: 108
Period size: 38 Copynumber: 1.9 Consensus size: 37
7493794 TTAATTCATA
* *
7493804 TAATAATAATTATATTAAGAATGTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATATGATTAAATTATATT
*
7493842 TAATAATAATTATGTTAAAATATGATTAAATTAT
1 TAATAATAATTATATTAAAATATGATTAAATTAT
7493876 TTATTATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 14 0.45
38 17 0.55
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (37 bp):
TAATAATAATTATATTAAAATATGATTAAATTATATT
Found at i:7494126 original size:32 final size:33
Alignment explanation
Indices: 7494086--7494156 Score: 110
Period size: 32 Copynumber: 2.2 Consensus size: 33
7494076 TTGAATTACT
*
7494086 AATTACAACTCCATTCAATTACAGCTCTA-TTC
1 AATTACAACTCCATTCAATTACAGCCCTATTTC
*
7494118 AATTACAACTCTATTCAATTACAGCCCTATTTC
1 AATTACAACTCCATTCAATTACAGCCCTATTTC
7494151 -ATTACA
1 AATTACA
7494157 GTGAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 33 0.92
33 3 0.08
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (33 bp):
AATTACAACTCCATTCAATTACAGCCCTATTTC
Found at i:7494147 original size:16 final size:16
Alignment explanation
Indices: 7494086--7494157 Score: 92
Period size: 16 Copynumber: 4.5 Consensus size: 16
7494076 TTGAATTACT
* *
7494086 AATTACAACTCCATTC
1 AATTACAGCTCTATTC
7494102 AATTACAGCTCTATTC
1 AATTACAGCTCTATTC
*
7494118 AATTACAACTCTATTC
1 AATTACAGCTCTATTC
*
7494134 AATTACAGCCCTATTTC
1 AATTACAGCTCTA-TTC
7494151 -ATTACAG
1 AATTACAG
7494158 TGAACCAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
16 47 0.94
17 3 0.06
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (16 bp):
AATTACAGCTCTATTC
Found at i:7496884 original size:49 final size:49
Alignment explanation
Indices: 7496827--7496974 Score: 242
Period size: 49 Copynumber: 3.0 Consensus size: 49
7496817 GTTTGTGTAT
7496827 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
*
7496876 TCATAACAATTTGGTACCAAAGCCCATCACAATAGGCAATGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
* * * * *
7496925 TCATAACAATTTCGTACCAAAGCCTACCACAACAGGCAACGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
7496974 T
1 T
7496975 GTTGTTACAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 93 1.00
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.24
Consensus pattern (49 bp):
TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
Found at i:7499799 original size:12 final size:12
Alignment explanation
Indices: 7499782--7499820 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
7499772 AATATGGTTC
7499782 TTTTCTTTTTTT
1 TTTTCTTTTTTT
7499794 TTTTC-TTTTTT
1 TTTTCTTTTTTT
*
7499805 CTTTCTTTTTTT
1 TTTTCTTTTTTT
7499817 TTTT
1 TTTT
7499821 TTAAAGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:7499802 original size:11 final size:11
Alignment explanation
Indices: 7499782--7499819 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
7499772 AATATGGTTC
7499782 TTTTCTTTTTTT
1 TTTTC-TTTTTT
7499794 TTTTCTTTTTT
1 TTTTCTTTTTT
*
7499805 CTTTCTTTTTT
1 TTTTCTTTTTT
7499816 TTTT
1 TTTT
7499820 TTTAAAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:7499806 original size:19 final size:19
Alignment explanation
Indices: 7499782--7499822 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7499772 AATATGGTTC
7499782 TTTTCTTT-TTTTTTTTCTT
1 TTTTCTTTCTTTTTTTT-TT
7499801 TTTTCTTTCTTTTTTTTTT
1 TTTTCTTTCTTTTTTTTTT
7499820 TTT
1 TTT
7499823 AAAGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (19 bp):
TTTTCTTTCTTTTTTTTTT
Found at i:7502838 original size:2 final size:2
Alignment explanation
Indices: 7502831--7502871 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7502821 AAAAAGTTAA
7502831 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7502872 CAGTAAATGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7509383 original size:33 final size:33
Alignment explanation
Indices: 7509303--7509387 Score: 84
Period size: 33 Copynumber: 2.5 Consensus size: 33
7509293 TAGATTTTAA
7509303 TTTTTTTTAATATTTTAAATTTAAAAAAATATTT
1 TTTTTTTTAAT-TTTTAAATTTAAAAAAATATTT
* * * * *
7509337 TTATTCTTT-ATTTTTGAATTTTAAAGAGT-TGTT
1 TT-TTTTTTAATTTTTAAATTTAAAAAAATAT-TT
7509370 TTTTTTTTAATTTTTAAA
1 TTTTTTTTAATTTTTAAA
7509388 AAAAGTAAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
32 6 0.15
33 26 0.63
34 4 0.10
35 5 0.12
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.62
Consensus pattern (33 bp):
TTTTTTTTAATTTTTAAATTTAAAAAAATATTT
Found at i:7509587 original size:10 final size:10
Alignment explanation
Indices: 7509572--7509598 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7509562 AGTATGAACT
7509572 GGTTAAATCG
1 GGTTAAATCG
7509582 GGTTAAATCG
1 GGTTAAATCG
7509592 GGTTAAA
1 GGTTAAA
7509599 AAATCAGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (10 bp):
GGTTAAATCG
Found at i:7519530 original size:16 final size:17
Alignment explanation
Indices: 7519495--7519535 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
7519485 CTTGACATAT
7519495 TTTACAAATTTTAATCAA
1 TTTA-AAATTTTAATCAA
7519513 -TTAAAATATTTAAT-AA
1 TTTAAAAT-TTTAATCAA
7519529 TTTAAAA
1 TTTAAAA
7519536 AAAACAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTAAAATTTTAATCAA
Found at i:7521453 original size:28 final size:28
Alignment explanation
Indices: 7521419--7521476 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
7521409 ATTAAATAAA
*
7521419 ATTATTTTCCAATTATTTAAATATTATC
1 ATTATTTTCAAATTATTTAAATATTATC
*
7521447 ATTATTTTTAAATTATTTAAATATTATC
1 ATTATTTTCAAATTATTTAAATATTATC
7521475 AT
1 AT
7521477 AATTATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (28 bp):
ATTATTTTCAAATTATTTAAATATTATC
Found at i:7521492 original size:28 final size:28
Alignment explanation
Indices: 7521433--7521493 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
7521423 TTTTCCAATT
* * *
7521433 ATTTAAATATTATCATTATTTTTAAATT
1 ATTTAAATATTATCATAATTATTAAATA
*
7521461 ATTTAAATATTATCATAATTATTGAATA
1 ATTTAAATATTATCATAATTATTAAATA
7521489 ATTTA
1 ATTTA
7521494 CTTAATTACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (28 bp):
ATTTAAATATTATCATAATTATTAAATA
Found at i:7522677 original size:18 final size:18
Alignment explanation
Indices: 7522646--7522680 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7522636 TTGTTGGCCA
7522646 TATGAACAAATGCAATGG
1 TATGAACAAATGCAATGG
* *
7522664 TATGACCAATTGCAATG
1 TATGAACAAATGCAATG
7522681 TGTAAGGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (18 bp):
TATGAACAAATGCAATGG
Found at i:7532312 original size:28 final size:28
Alignment explanation
Indices: 7532261--7532331 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
7532251 CTTAATGTAT
* *
7532261 ACTTTAATCCTTAAAGTATATTTTTTTCC
1 ACTTTAATCC-TAAAATATATTTTTATCC
* *
7532290 ACTTTGATCCTAAAATTTATTTTTATCC
1 ACTTTAATCCTAAAATATATTTTTATCC
7532318 ACTTTAATCTCTAA
1 ACTTTAATC-CTAA
7532332 TATTGAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 23 0.64
29 13 0.36
ACGTcount: A:0.30, C:0.18, G:0.03, T:0.49
Consensus pattern (28 bp):
ACTTTAATCCTAAAATATATTTTTATCC
Found at i:7533490 original size:2 final size:2
Alignment explanation
Indices: 7533485--7533514 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7533475 TTTTAAAGTT
7533485 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7533515 ACAAGGTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7535764 original size:2 final size:2
Alignment explanation
Indices: 7535757--7535787 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7535747 AAGTTAAAGT
7535757 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7535788 TTGACAATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7538023 original size:13 final size:13
Alignment explanation
Indices: 7538000--7538034 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
7537990 TCTTAACAGT
7538000 CAATAAATTGATCA
1 CAAT-AATTGATCA
7538014 CAATAATTGATCA
1 CAATAATTGATCA
7538027 CAATAATT
1 CAATAATT
7538035 TGTAGATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 17 0.81
14 4 0.19
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (13 bp):
CAATAATTGATCA
Found at i:7538245 original size:14 final size:14
Alignment explanation
Indices: 7538204--7538236 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7538194 ACTTTTTGAT
7538204 TAATGGAAACATAA
1 TAATGGAAACATAA
*
7538218 TAATGGAGACATAA
1 TAATGGAAACATAA
7538232 TAATG
1 TAATG
7538237 TAAATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.24
Consensus pattern (14 bp):
TAATGGAAACATAA
Found at i:7548684 original size:2 final size:2
Alignment explanation
Indices: 7548679--7548706 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7548669 TTTAACACAC
7548679 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7548707 GTATTTCGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7550625 original size:9 final size:9
Alignment explanation
Indices: 7550599--7550647 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
7550589 ATATTTTGTG
*
7550599 ATGATAATC
1 ATGATCATC
* *
7550608 ATCACCATC
1 ATGATCATC
7550617 ATGATCATC
1 ATGATCATC
*
7550626 ATGATCACC
1 ATGATCATC
*
7550635 ATGATCATG
1 ATGATCATC
7550644 ATGA
1 ATGA
7550648 AGGTGGTAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (9 bp):
ATGATCATC
Found at i:7558432 original size:20 final size:20
Alignment explanation
Indices: 7558407--7558471 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 20
7558397 AAGTTTTAAT
7558407 AAAATATTTAAAATTTAG-AA
1 AAAATATTTAAAATTT-GTAA
7558427 AAAATA--TAAAATTTGTAA
1 AAAATATTTAAAATTTGTAA
*
7558445 AAAA-ATTATAAAA-ATGTAA
1 AAAATATT-TAAAATTTGTAA
7558464 AGAAATAT
1 A-AAATAT
7558472 AAAATTCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
17 2 0.05
18 14 0.37
19 6 0.16
20 14 0.37
21 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (20 bp):
AAAATATTTAAAATTTGTAA
Found at i:7558436 original size:18 final size:17
Alignment explanation
Indices: 7558401--7558495 Score: 73
Period size: 19 Copynumber: 5.0 Consensus size: 17
7558391 ATGATTAAGT
*
7558401 TTTAATAAAATATTTAAAA
1 TTTAA-AAAA-ATATAAAA
7558420 TTTAGAAAAAATATAAAA
1 TTTA-AAAAAATATAAAA
7558438 TTTGTAAAAAAATTATAAAAA
1 -TT-TAAAAAAA-TAT-AAAA
* *
7558459 TGTAAAGAAATATAAAA
1 TTTAAAAAAATATAAAA
7558476 TTCATTAAAAAAATATAAAA
1 -T--TTAAAAAAATATAAAA
7558496 ATTATCGTAC
Statistics
Matches: 63, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
17 4 0.06
18 11 0.17
19 23 0.37
20 21 0.33
21 4 0.06
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (17 bp):
TTTAAAAAAATATAAAA
Found at i:7558457 original size:38 final size:37
Alignment explanation
Indices: 7558376--7558495 Score: 95
Period size: 38 Copynumber: 3.2 Consensus size: 37
7558366 ATAAAAATAA
* * * *
7558376 ATAAAAAGTATAAAAATGATTAAGTT-TTAATAAAATATT
1 ATAAAATGTAAAAAAAT-ATAAAATTATTAA-AAAA-ATT
*
7558415 -TAAAATTTAGAAAAAATATAAAATT-TGTAAAAAAATT
1 ATAAAATGTA-AAAAAATATAAAATTAT-TAAAAAAATT
*
7558452 ATAAAAATGTAAAGAAATATAAAATTCATTAAAAAAA-T
1 AT-AAAATGTAAAAAAATATAAAATT-ATTAAAAAAATT
7558490 ATAAAA
1 ATAAAA
7558496 ATTATCGTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
37 7 0.10
38 36 0.53
39 24 0.35
40 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (37 bp):
ATAAAATGTAAAAAAATATAAAATTATTAAAAAAATT
Found at i:7558489 original size:20 final size:20
Alignment explanation
Indices: 7558425--7558500 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
7558415 TAAAATTTAG
7558425 AAAAAATATAAAATT-TGTA
1 AAAAAATATAAAATTATGTA
7558444 AAAAAATTATAAAA--ATGTA
1 AAAAAA-TATAAAATTATGTA
*
7558463 AAGAAATATAAAATTCAT-TA
1 AAAAAATATAAAATT-ATGTA
7558483 AAAAAATATAAAAATTAT
1 AAAAAATAT-AAAATTAT
7558501 CGTACTAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
18 7 0.14
19 15 0.31
20 19 0.39
21 8 0.16
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (20 bp):
AAAAAATATAAAATTATGTA
Found at i:7558678 original size:11 final size:11
Alignment explanation
Indices: 7558664--7558763 Score: 52
Period size: 11 Copynumber: 9.3 Consensus size: 11
7558654 TTTTGATGCA
7558664 TTTTATAATTT
1 TTTTATAATTT
*
7558675 TTTTCTAATTAT
1 TTTTATAATT-T
**
7558687 AAATTATAAATATT
1 -TTTTAT-AAT-TT
7558701 TTTTAT-ATTT
1 TTTTATAATTT
*
7558711 TTATTA-AA--A
1 TT-TTATAATTT
*
7558720 TTTAATAA-TT
1 TTTTATAATTT
7558730 T-TTATAATTT
1 TTTTATAATTT
*
7558740 TTAT-TAATTT
1 TTTTATAATTT
7558750 TTTTATAATTT
1 TTTTATAATTT
7558761 TTT
1 TTT
7558764 GCCACATGCC
Statistics
Matches: 66, Mismatches: 12, Indels: 22
0.66 0.12 0.22
Matches are distributed among these distances:
8 2 0.03
9 9 0.14
10 17 0.26
11 25 0.38
12 1 0.02
13 7 0.11
14 4 0.06
15 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:7558714 original size:28 final size:27
Alignment explanation
Indices: 7558683--7558749 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
7558673 TTTTTTCTAA
*
7558683 TTATAAATTATAAATATTTTTTAT-ATTT
1 TTATAAATT-T-AATAATTTTTATAATTT
7558711 TTATTAAAATTTAATAATTTTTATAATTT
1 TTA-T-AAATTTAATAATTTTTATAATTT
*
7558740 TTATTAATTT
1 TTATAAATTT
7558750 TTTTATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
27 5 0.15
28 15 0.44
29 9 0.26
30 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TTATAAATTTAATAATTTTTATAATTT
Found at i:7558733 original size:10 final size:10
Alignment explanation
Indices: 7558698--7558762 Score: 53
Period size: 10 Copynumber: 6.6 Consensus size: 10
7558688 AATTATAAAT
*
7558698 ATTTTTTAT-
1 ATTTTTAATA
*
7558707 ATTTTTATTA
1 ATTTTTAATA
**
7558717 AAATTTAATA
1 ATTTTTAATA
7558727 ATTTTT-ATA
1 ATTTTTAATA
*
7558736 ATTTTTATTA
1 ATTTTTAATA
*
7558746 ATTTTTTTATA
1 A-TTTTTAATA
7558757 ATTTTT
1 ATTTTT
7558763 TGCCACATGC
Statistics
Matches: 43, Mismatches: 10, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
9 16 0.37
10 19 0.44
11 8 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:7558752 original size:12 final size:11
Alignment explanation
Indices: 7558728--7558763 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
7558718 AATTTAATAA
7558728 TTTTTATAATT
1 TTTTTATAATT
*
7558739 TTTAT-TAATT
1 TTTTTATAATT
7558749 TTTTTATAATT
1 TTTTTATAATT
7558760 TTTT
1 TTTT
7558764 GCCACATGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:7558763 original size:10 final size:9
Alignment explanation
Indices: 7558700--7558762 Score: 56
Period size: 9 Copynumber: 6.6 Consensus size: 9
7558690 TTATAAATAT
7558700 TTTTTAT-A
1 TTTTTATAA
7558708 TTTTTATTAAA
1 TTTTTA-T-AA
* *
7558719 ATTTAATAA
1 TTTTTATAA
7558728 TTTTTATAA
1 TTTTTATAA
7558737 TTTTTATTAA
1 TTTTTA-TAA
7558747 TTTTTTTATAA
1 --TTTTTATAA
7558758 TTTTT
1 TTTTT
7558763 TGCCACATGC
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.13
9 21 0.47
10 4 0.09
11 8 0.18
12 6 0.13
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7559059 original size:90 final size:88
Alignment explanation
Indices: 7558897--7559058 Score: 218
Period size: 90 Copynumber: 1.8 Consensus size: 88
7558887 GCTTTTTTTT
* * * * *
7558897 TTTTTTTGAAAAAGTTTGATGTCTTTTTAATGCATTTTAAAAGTTTAAGTACCAAATTGAGTGCA
1 TTTTTTTGAAAAAGTTTAAGGTCTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTGCA
*
7558962 AACAAAAAGTAGGGCTTAATTGC
66 AAAAAAAAGTAGGGCTTAATTGC
* * *
7558985 TTTTTTTGAAAAAGTTTAAAGGTATTTTTTGATGCATTGTGAAAGTTGAAGTACC-AAGTGAGTG
1 TTTTTTTGAAAAAGTTT-AAGGT-CTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTG
7559049 CAAAAAAAAA
64 CAAAAAAAAA
7559059 AAAAGTTGGG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
88 17 0.27
89 20 0.32
90 26 0.41
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (88 bp):
TTTTTTTGAAAAAGTTTAAGGTCTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTGCA
AAAAAAAAGTAGGGCTTAATTGC
Found at i:7583743 original size:21 final size:21
Alignment explanation
Indices: 7583719--7583758 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7583709 TAATTGAGTT
7583719 TTTCTATTATTTCAATATGTA
1 TTTCTATTATTTCAATATGTA
*
7583740 TTTCTTTTATTTCAATATG
1 TTTCTATTATTTCAATATG
7583759 AACAATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.10, G:0.05, T:0.60
Consensus pattern (21 bp):
TTTCTATTATTTCAATATGTA
Found at i:7586468 original size:13 final size:12
Alignment explanation
Indices: 7586452--7586522 Score: 52
Period size: 15 Copynumber: 5.1 Consensus size: 12
7586442 CAACATATAC
7586452 TTTATTTATATTT
1 TTTATTT-TATTT
7586465 TTTATTTTATTAT
1 TTTATTTTATT-T
7586478 TATTATTATTATTAT
1 T-TTATT-TTATT-T
7586493 TATTATTATTATTAT
1 T-TTATT-TTATT-T
7586508 TATTATTATTATTT
1 T-TTATT-TTATTT
7586522 T
1 T
7586523 CAAATGTAGT
Statistics
Matches: 55, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
12 4 0.07
13 9 0.16
14 7 0.13
15 35 0.64
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:7586472 original size:7 final size:8
Alignment explanation
Indices: 7586456--7586520 Score: 71
Period size: 9 Copynumber: 7.8 Consensus size: 8
7586446 ATATACTTTA
7586456 TTTA-TAT
1 TTTATTAT
7586463 TTT-TTAT
1 TTTATTAT
7586470 TTTATTAT
1 TTTATTAT
7586478 TATTATTAT
1 T-TTATTAT
7586487 TATTATTAT
1 T-TTATTAT
7586496 TATTATTAT
1 T-TTATTAT
7586505 TATTATTAT
1 T-TTATTAT
7586514 TATTATT
1 T-TTATT
7586521 TTCAAATGTA
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
7 9 0.16
8 5 0.09
9 41 0.75
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTATTAT
Found at i:7586479 original size:3 final size:3
Alignment explanation
Indices: 7586466--7586520 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
7586456 TTTATATTTT
7586466 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7586513 TTA TTA TT
1 TTA TTA TT
7586521 TTCAAATGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7588529 original size:73 final size:73
Alignment explanation
Indices: 7588404--7588548 Score: 231
Period size: 73 Copynumber: 2.0 Consensus size: 73
7588394 ACAAACCATG
*
7588404 TGGAACTCTTTCAGATGAGTGTGGGAGTTCTCGTTTTTCAAACCGCAGAAAGTAGGCAATAAATG
1 TGGAACTCTTTCAGATGAGTGTGGGAGTTCTCGTTTTTCAAACCACAGAAAGTAGGCAATAAATG
7588469 AATTAATT
66 AATTAATT
* *
7588477 TGGAACTCTTTCGGATGAGTGT-GGAGGTTCTTGTTTTTCAAACCAC-GAAAAGTAGGCAATAAA
1 TGGAACTCTTTCAGATGAGTGTGGGA-GTTCTCGTTTTTCAAACCACAG-AAAGTAGGCAATAAA
7588540 TGAATTAAT
64 TGAATTAAT
7588549 CCTGACATTA
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
72 4 0.06
73 63 0.94
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (73 bp):
TGGAACTCTTTCAGATGAGTGTGGGAGTTCTCGTTTTTCAAACCACAGAAAGTAGGCAATAAATG
AATTAATT
Found at i:7598309 original size:26 final size:26
Alignment explanation
Indices: 7598280--7598389 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7598270 TGATACAAAT
*
7598280 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7598306 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7598332 TGATAATTGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7598358 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7598384 TGATAA
1 TGATAA
7598390 CAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7599922 original size:26 final size:25
Alignment explanation
Indices: 7599870--7599922 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
7599860 TTTACAGTTT
7599870 TACCCCTAGTAGGTAAATTACCGAAA
1 TACCCCTAG-AGGTAAATTACCGAAA
*
7599896 TACCCCTAG-GGTTAAATTGACCTAAA
1 TACCCCTAGAGG-TAAATT-ACCGAAA
7599922 T
1 T
7599923 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGGTAAATTACCGAAA
Found at i:7605307 original size:14 final size:15
Alignment explanation
Indices: 7605288--7605317 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7605278 TTCGTTATCA
7605288 TTTGCCAT-TTTTAT
1 TTTGCCATGTTTTAT
7605302 TTTGCCATGTTTTAT
1 TTTGCCATGTTTTAT
7605317 T
1 T
7605318 CACTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.63
Consensus pattern (15 bp):
TTTGCCATGTTTTAT
Found at i:7609223 original size:26 final size:26
Alignment explanation
Indices: 7609172--7609225 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
7609162 AACAAATTAA
*
7609172 AAATACATTAAAAAAATTTTATACTT
1 AAATACATTAAAAAAATTGTATACTT
* *
7609198 AAATAACATTAAGATAATTGTA-ACTT
1 AAAT-ACATTAAAAAAATTGTATACTT
7609224 AA
1 AA
7609226 CAAATAAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATACATTAAAAAAATTGTATACTT
Found at i:7609296 original size:3 final size:3
Alignment explanation
Indices: 7609288--7609342 Score: 55
Period size: 3 Copynumber: 19.7 Consensus size: 3
7609278 AAAATATCCA
* * *
7609288 AAT AAT AAT AAT AAT AA- AAT AGT AAC AAT -AT AAT AAT AA- AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7609333 AAT AA- AAT AA
1 AAT AAT AAT AA
7609343 CAACAGAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
2 8 0.19
3 34 0.81
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:7609308 original size:11 final size:11
Alignment explanation
Indices: 7609288--7609342 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
7609278 AAAATATCCA
7609288 AATAATAATAAT
1 AATAA-AATAAT
*
7609300 AATAAAATAGT
1 AATAAAATAAT
* *
7609311 AACAATATAAT
1 AATAAAATAAT
*
7609322 AATAAAATGAT
1 AATAAAATAAT
7609333 AATAAAATAA
1 AATAAAATAA
7609343 CAACAGAAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
11 30 0.86
12 5 0.14
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Done.