Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 250 of 328
Found at i:74373485 original size:27 final size:27
Alignment explanation
Indices: 74373464--74373553 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
74373454 GGGTACTTTG
*
74373464 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
74373491 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
74373518 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
74373545 GTAATTTTA
1 GTAATTTTA
74373554 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:74373495 original size:81 final size:81
Alignment explanation
Indices: 74373142--74373512 Score: 280
Period size: 80 Copynumber: 4.6 Consensus size: 81
74373132 AGGTATTTTT
** * * * * * * * * *
74373142 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
*
74373207 AATCG-CGGTAAAACG
66 AATCGAGGGTAAAACG
* ** * * * * * * * *
74373222 ATAATTTTGTAAATCGAGGGTAAAACAGTCATTCTGTAAATCAAGGGTAAAACGGTAATTTTATA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
*
74373287 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAACG
* * ** * * *
74373303 AT-ATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
74373367 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
** * * * *
74373383 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGT
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAG-TAATTCTGT
* ****
74373447 AAATCGGGGGTACTTTG
65 AAATCGAGGGTAAAACG
* *** * *
74373464 GTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTA
74373513 TTTCAGTATT
Statistics
Matches: 246, Mismatches: 42, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
80 132 0.54
81 114 0.46
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:74373505 original size:54 final size:54
Alignment explanation
Indices: 74373447--74373553 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
74373437 ATAATTCTGT
* * *
74373447 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
74373501 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
74373554 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:74373567 original size:27 final size:27
Alignment explanation
Indices: 74373464--74373568 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
74373454 GGGTACTTTG
* *
74373464 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
74373491 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
74373518 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
74373545 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
74373569 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:74376689 original size:550 final size:550
Alignment explanation
Indices: 74375649--74376748 Score: 2155
Period size: 550 Copynumber: 2.0 Consensus size: 550
74375639 CGGATCTGAT
74375649 GCGCCACATTGGTGCGTTCAAAACACTTAGTTTGGAAAAGCTGAGTTGGTGTTGTAAAAGATACT
1 GCGCCACATTGGTGCGTTCAAAACACTTAGTTTGGAAAAGCTGAGTTGGTGTTGTAAAAGATACT
*
74375714 TTTAAAAGAAGGTTAAAGTGAATGGAAGCTGTGCACCAGGTAGGAAACCAGGAAAAAGAGGAGGT
66 TTTAAAAGAAGGTTAAAGTGAATGGAAGCTGTGCACCAGGAAGGAAACCAGGAAAAAGAGGAGGT
74375779 GAGTCCGTCGGACTGCTTAAGTACCAAGCTCTCTTCGGATCCAATCCTAGACATGCACACCGCCA
131 GAGTCCGTCGGACTGCTTAAGTACCAAGCTCTCTTCGGATCCAATCCTAGACATGCACACCGCCA
74375844 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAAACCGTTTGATTATGACCATCTTAAGAAA
196 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAAACCGTTTGATTATGACCATCTTAAGAAA
74375909 ATGATTAAGGTTGCAAAACGTTTGCTTAAAGATATTTATTTTTCTTGGGAAAACATTTACTTTGC
261 ATGATTAAGGTTGCAAAACGTTTGCTTAAAGATATTTATTTTTCTTGGGAAAACATTTACTTTGC
74375974 GGAAACTTTGCTCGTCATCGTGATCTTTTTAAAAACAAGTAGTTTATATAAAATGAACCCTAGTG
326 GGAAACTTTGCTCGTCATCGTGATCTTTTTAAAAACAAGTAGTTTATATAAAATGAACCCTAGTG
74376039 CTAGCCAGTTTAATAATCCCCAAAATAAAAGTAATTAAAAAGAGCGGACTTATTACAACCTTAAG
391 CTAGCCAGTTTAATAATCCCCAAAATAAAAGTAATTAAAAAGAGCGGACTTATTACAACCTTAAG
74376104 CATAATAAAAATAAAATAATCCAAATTAAAGGCTAAACTTATTTAAAATCGTCAATCAATCTTCA
456 CATAATAAAAATAAAATAATCCAAATTAAAGGCTAAACTTATTTAAAATCGTCAATCAATCTTCA
74376169 TGGCCACTCTGAATCCCGCCCAGCTCCAAG
521 TGGCCACTCTGAATCCCGCCCAGCTCCAAG
74376199 GCGCCACATTGGTGCGTTCAAAACACTTAGTTTGGAAAAGCTGAGTTGGTGTTGTAAAAGATACT
1 GCGCCACATTGGTGCGTTCAAAACACTTAGTTTGGAAAAGCTGAGTTGGTGTTGTAAAAGATACT
74376264 TTTAAAAGAAGGTTAAAGTGAATGGAAGCTGTGCACCAGGAAGGAAACCAGGAAAAAGAGGAGGT
66 TTTAAAAGAAGGTTAAAGTGAATGGAAGCTGTGCACCAGGAAGGAAACCAGGAAAAAGAGGAGGT
*
74376329 GAGTCCGTCGGACTGCTTAAGTACCAAGCTCTCTTTGGATCCAATCCTAGACATGCACACCGCCA
131 GAGTCCGTCGGACTGCTTAAGTACCAAGCTCTCTTCGGATCCAATCCTAGACATGCACACCGCCA
74376394 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAAACCGTTTGATTATGACCATCTTAAGAAA
196 TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAAACCGTTTGATTATGACCATCTTAAGAAA
74376459 ATGATTAAGGTTGCAAAACGTTTGCTTAAAGATATTTATTTTTCTTGGGAAAACATTTACTTTGC
261 ATGATTAAGGTTGCAAAACGTTTGCTTAAAGATATTTATTTTTCTTGGGAAAACATTTACTTTGC
* *
74376524 GGAAACTTTGCTCGTCATCTTGATCTTTTTAAAAACAAGTAGTTTTTATAAAATGAACCCTAGTG
326 GGAAACTTTGCTCGTCATCGTGATCTTTTTAAAAACAAGTAGTTTATATAAAATGAACCCTAGTG
*
74376589 CTAGCCAGTTTAATAATCCCCAAAATAAAAGTAATTAAAAAGAGCGGCCTTATTACAACCTTAAG
391 CTAGCCAGTTTAATAATCCCCAAAATAAAAGTAATTAAAAAGAGCGGACTTATTACAACCTTAAG
74376654 CATAATAAAAATAAAATAATCCAAATTAAAGGCTAAACTTATTTAAAATCGTCAATCAATCTTCA
456 CATAATAAAAATAAAATAATCCAAATTAAAGGCTAAACTTATTTAAAATCGTCAATCAATCTTCA
74376719 TGGCCACTCTGAATCCCGCCCAGCTCCAAG
521 TGGCCACTCTGAATCCCGCCCAGCTCCAAG
74376749 TCCACCAATT
Statistics
Matches: 545, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
550 545 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (550 bp):
GCGCCACATTGGTGCGTTCAAAACACTTAGTTTGGAAAAGCTGAGTTGGTGTTGTAAAAGATACT
TTTAAAAGAAGGTTAAAGTGAATGGAAGCTGTGCACCAGGAAGGAAACCAGGAAAAAGAGGAGGT
GAGTCCGTCGGACTGCTTAAGTACCAAGCTCTCTTCGGATCCAATCCTAGACATGCACACCGCCA
TTGCCACACTCTAACATCTCGTATAATTTTGAGAAAAACCGTTTGATTATGACCATCTTAAGAAA
ATGATTAAGGTTGCAAAACGTTTGCTTAAAGATATTTATTTTTCTTGGGAAAACATTTACTTTGC
GGAAACTTTGCTCGTCATCGTGATCTTTTTAAAAACAAGTAGTTTATATAAAATGAACCCTAGTG
CTAGCCAGTTTAATAATCCCCAAAATAAAAGTAATTAAAAAGAGCGGACTTATTACAACCTTAAG
CATAATAAAAATAAAATAATCCAAATTAAAGGCTAAACTTATTTAAAATCGTCAATCAATCTTCA
TGGCCACTCTGAATCCCGCCCAGCTCCAAG
Found at i:74377979 original size:27 final size:27
Alignment explanation
Indices: 74377949--74378010 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
74377939 GGGCAAAATG
74377949 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
74377976 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
74378003 GTAATTTT
1 GTAATTTT
74378011 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:74378078 original size:27 final size:27
Alignment explanation
Indices: 74377993--74378078 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
74377983 TACCCTACAG
* * *
74377993 GGGTATTTTAGTAATTTTTCAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
74378019 TGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATCGA
* **
74378047 AGGTATTTCT-GTAATTTTGTAAATCGA
1 GGGTATTT-TGGTAATTTTACAAATCGA
74378074 GGGTA
1 GGGTA
74378079 AAATAGTAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
27 46 0.96
28 2 0.04
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:74378115 original size:54 final size:54
Alignment explanation
Indices: 74378057--74378373 Score: 442
Period size: 54 Copynumber: 5.9 Consensus size: 54
74378047 AGGTATTTCT
* ** * * * * *
74378057 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
74378111 GTAATTCTATAAATCG-GCGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAG-GGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
74378165 GTAATTCTGTAAATC-AAGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
74378218 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
74378272 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * *
74378326 GTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
74378374 CTTTGGTAAT
Statistics
Matches: 239, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
53 79 0.33
54 160 0.67
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:74378367 original size:134 final size:134
Alignment explanation
Indices: 74378057--74378373 Score: 444
Period size: 134 Copynumber: 2.4 Consensus size: 134
74378047 AGGTATTTCT
* * * * *
74378057 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
74378122 AATCGGCGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGTAA
66 AATCGGCGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGTAA
74378187 AACG
131 AACG
* * *
74378191 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* * *
74378256 AATCGAG-GGTAAAAC-AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGG
66 AATCG-GCGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AAGG
74378319 TAAAACG
128 TAAAACG
* *
74378326 GTAATTATGTAAATCG-GGGTAAAAC-GATAATTCTGTAAATCGGGGGTA
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTA
74378374 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
133 2 0.01
134 137 0.84
135 25 0.15
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (134 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCGGCGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGTAA
AACG
Found at i:74378384 original size:27 final size:27
Alignment explanation
Indices: 74378057--74378373 Score: 397
Period size: 27 Copynumber: 11.8 Consensus size: 27
74378047 AGGTATTTCT
* **
74378057 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * **
74378084 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74378111 GTAATTCTATAAATCG-GCGGTAAAACG
1 GTAATTCTGTAAATCGAG-GGTAAAACG
* * *
74378138 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74378165 GTAATTCTGTAAATC-AAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74378191 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
74378218 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74378245 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
74378272 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74378299 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74378326 GTAATTATGTAAATCG-GGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74378352 ATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
74378374 CTTTGGTAAT
Statistics
Matches: 251, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 47 0.19
27 203 0.81
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:74378400 original size:27 final size:27
Alignment explanation
Indices: 74378379--74378468 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
74378369 GGGTACTTTG
*
74378379 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
74378406 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
74378433 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
74378460 GTAATTTTA
1 GTAATTTTA
74378469 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:74378408 original size:134 final size:134
Alignment explanation
Indices: 74378057--74378427 Score: 415
Period size: 134 Copynumber: 2.8 Consensus size: 134
74378047 AGGTATTTCT
* * * * * * ** * *
74378057 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
**
74378122 AATCGGCGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGTA
66 AATCGAAGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGTA
74378186 AAACG
130 AAACG
* *
74378191 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATA
1 GTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
* * * * *
74378256 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
66 AATCGAAGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AAGGTA
74378321 AAACG
130 AAACG
* * ****
74378326 GTAATTATGTAAATCG-GGGTAAAAC-GATAATTCTGTAAATCGGGGGTACTTTGGTAATTTTAC
1 GTAATTATATAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
* *** **
74378389 AAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
65 AAATCGAAGGTAAAACAGTAATTTTGTAAATCGAGGGTA
74378428 TTTCAGTATT
Statistics
Matches: 204, Mismatches: 30, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
133 1 0.00
134 178 0.87
135 25 0.12
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (134 bp):
GTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
AATCGAAGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGTAA
AACG
Found at i:74378410 original size:80 final size:81
Alignment explanation
Indices: 74378057--74378427 Score: 300
Period size: 80 Copynumber: 4.6 Consensus size: 81
74378047 AGGTATTTCT
** * * * * * * * * *
74378057 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
74378122 AATCG-GCGGTAAAACG
66 AATCGAG-GGTAAAACG
* ** * * * * * * *
74378138 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AAGGTAAAACGGTAATTTTATA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
*
74378202 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAACG
* ** * * *
74378218 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
74378283 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
** * * *
74378299 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCG-GGGTAAAAC-GATAATTCTGT
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAG-TAATTCTGT
* ****
74378362 AAATCGGGGGTACTTTG
65 AAATCGAGGGTAAAACG
* *** * *
74378379 GTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTA
74378428 TTTCAGTATT
Statistics
Matches: 248, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.00
80 128 0.52
81 119 0.48
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:74378427 original size:54 final size:54
Alignment explanation
Indices: 74378362--74378468 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
74378352 ATAATTCTGT
* * *
74378362 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
74378416 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
74378469 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:74378482 original size:27 final size:27
Alignment explanation
Indices: 74378379--74378483 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
74378369 GGGTACTTTG
* *
74378379 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
74378406 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
74378433 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
74378460 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
74378484 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:74381854 original size:24 final size:21
Alignment explanation
Indices: 74381821--74381867 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
74381811 AGTTTTCCCA
74381821 TGAAATAGGGTCACACACCCATG
1 TGAAATAGGG--ACACACCCATG
*
74381844 TGAACATAGGGACACACCCGTG
1 TGAA-ATAGGGACACACCCATG
74381866 TG
1 TG
74381868 CCTTTGGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 4 0.18
24 6 0.27
ACGTcount: A:0.32, C:0.26, G:0.26, T:0.17
Consensus pattern (21 bp):
TGAAATAGGGACACACCCATG
Found at i:74386233 original size:79 final size:80
Alignment explanation
Indices: 74386150--74386297 Score: 174
Period size: 80 Copynumber: 1.9 Consensus size: 80
74386140 TATGGTAACC
* * * *
74386150 CGCACCAAGGCCTACGGGACTTA-ACCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAGACCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
74386213 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
74386229 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAGACCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
74386294 CCGG
66 CCGG
74386298 TTATAATTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
79 20 0.36
80 36 0.64
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAGACCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:74386239 original size:40 final size:38
Alignment explanation
Indices: 74386190--74386297 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
74386180 ATCACGATTT
*
74386190 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
74386230 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
74386270 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
74386298 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:74394345 original size:79 final size:80
Alignment explanation
Indices: 74394262--74394409 Score: 174
Period size: 80 Copynumber: 1.9 Consensus size: 80
74394252 TATGGTAACC
* * * *
74394262 CGCACCAAGGCCTACGGGACTTA-ACCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAGACCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
74394325 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
74394341 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAGACCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
74394406 CCGG
66 CCGG
74394410 TTATAATTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
79 20 0.36
80 36 0.64
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAGACCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:74394351 original size:40 final size:38
Alignment explanation
Indices: 74394302--74394409 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
74394292 ATCACGATTT
*
74394302 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
74394342 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
74394382 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
74394410 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:74404311 original size:40 final size:40
Alignment explanation
Indices: 74404267--74404445 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
74404257 GCTCGATTGT
* * * *
74404267 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
74404307 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
74404347 CTTTGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * * *
74404387 CTTTGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
74404428 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
74404446 ATACCATTCG
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 90 0.76
41 26 0.22
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:74413788 original size:46 final size:46
Alignment explanation
Indices: 74413738--74413913 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74413728 TGGTTGAGCA
74413738 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74413784 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
74413829 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74413877 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74413914 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74413894 original size:93 final size:93
Alignment explanation
Indices: 74413735--74413906 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74413725 GGATGGTTGA
* *
74413735 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74413800 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
74413828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74413893 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
74413907 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74420884 original size:46 final size:46
Alignment explanation
Indices: 74420834--74421009 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74420824 TGGTTGAGCA
74420834 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74420880 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
74420925 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74420973 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74421010 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74420990 original size:93 final size:93
Alignment explanation
Indices: 74420831--74421002 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74420821 GGATGGTTGA
* *
74420831 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74420896 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
74420924 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74420989 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
74421003 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74429324 original size:46 final size:45
Alignment explanation
Indices: 74429085--74429444 Score: 221
Period size: 46 Copynumber: 7.6 Consensus size: 45
74429075 GTAGAATACT
*
74429085 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCATCCATCAA-GTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCAT--ATCAAGGCC
* ** * * * *
74429132 GATGCCATGTCCCAAACATGGTCTTACACTATCTATCGAAACCGAGGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TC-ATATCAAGGCC
* * * *
74429181 GACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCTATGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TC--ATATCAAGGCC
* * **
74429231 GATGCCATGTCCCAGACCTAGTCTTACACT-G--ACATATCTTGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATATCAAG--GCC
* *
74429277 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATATCAAGGCC
* * * * * *
74429323 GATGCATGTCCCAGACATGTGTTACACTAGCTCTCGTTTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-TCATATCAAGGCC
* *
74429369 GATGCCATGTCCCAGACATAGTCTTACACTGGC-TCTTAT-AATGTGGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATATCAA---GGCC
74429417 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
74429445 AGCACACAAA
Statistics
Matches: 254, Mismatches: 42, Indels: 35
0.77 0.13 0.11
Matches are distributed among these distances:
44 16 0.06
45 15 0.06
46 66 0.26
47 59 0.23
48 25 0.10
49 39 0.15
50 34 0.13
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATATCAAGGCC
Found at i:74429393 original size:94 final size:92
Alignment explanation
Indices: 74429083--74429447 Score: 293
Period size: 94 Copynumber: 3.9 Consensus size: 92
74429073 GGGTAGAATA
* *
74429083 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA-GTCGATGCCATGTCCCAA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--ATCAAGGCCGATGCCATGTCCCAG
* * ***
74429147 ACATGGTCTTACACTATCTATCGAAACCGAG
64 ACATAGTCTTACACTAGCTATCG-TTTC-AG
* * * * *
74429178 GTCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCTATGCCGATGCCATGTCC
1 CT-GATGCCATGTCCCAGACATGGTCTTACACT-G-GCTC--ATATCAAGGCCGATGCCATGTCC
*
74429243 CAGACCTAGTCTTACACT-GACATATC-TTGT-AG
61 CAGACATAGTCTTACACTAG-C-TATCGTT-TCAG
* * *
74429275 CCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATCTCAAGGCCGATG-CATGTCCCAG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATATCAAGGCCGATGCCATGTCCCAG
* *
74429337 ACAT-GTGTTACACTAGCTCTCGTTTCAATG
64 ACATAGTCTTACACTAGCTATCGTTTC-A-G
* * *
74429367 CTGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTTAT-AATGTGGTCGATG-CATGTCCCA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCAA---GGCCGATGCCATGTCCCA
74429430 GACAT-GTCTTACACTAGC
63 GACATAGTCTTACACTAGC
74429448 ACACAAATAA
Statistics
Matches: 220, Mismatches: 29, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
89 4 0.02
90 12 0.05
91 17 0.08
92 22 0.10
93 16 0.07
94 57 0.26
95 14 0.06
96 32 0.15
97 3 0.01
98 7 0.03
99 30 0.14
100 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCAAGGCCGATGCCATGTCCCAGAC
ATAGTCTTACACTAGCTATCGTTTCAG
Found at i:74429439 original size:140 final size:143
Alignment explanation
Indices: 74429083--74429447 Score: 422
Period size: 140 Copynumber: 2.6 Consensus size: 143
74429073 GGGTAGAATA
* ** *
74429083 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ATCCATCAAGTCGATGCCATGTCCCAA
1 CTGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTAT-CATGTAGTCGATG-CATGTCCCAG
* * *
74429147 ACATGGTCTTACACTATCTATCGAAACCGAGGTCGACGCCATGTCCCAGACATGGTCTTACACTA
64 ACAT-GTCTTACACTAGCTATC-AAACCAAGGCCGACGCCATGTCCCAGACATGGTCTTACACTA
*
74429212 GCTCTCGTATATCTATG
127 GCTCTCGTATATCAATG
* * * * * * *
74429229 CCGATGCCATGTCCCAGACCTAGTCTTACACTGAC-ATATCTTGTAGCCGATGCATGTCCTAGAC
1 CTGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTATCATGTAGTCGATGCATGTCCCAGAC
* * * *
74429293 ATGTCTTACACTGGCT-T-ACATCTCAAGGCCGATG-CATGTCCCAGACAT-GTGTTACACTAGC
66 ATGTCTTACACTAGCTATCA-AAC-CAAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGC
74429354 TCTCGT-T-TCAATG
129 TCTCGTATATCAATG
* *
74429367 CTGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTTATAATGTGGTCGATGCATGTCCCAGA
1 CTGATGCCATGTCCCAGACATAGTCTTACACTGGCTC-TATCATGTAGTCGATGCATGTCCCAGA
74429432 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
74429448 ACACAAATAA
Statistics
Matches: 185, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
138 37 0.20
139 1 0.01
140 56 0.30
141 16 0.09
142 9 0.05
143 12 0.06
144 12 0.06
145 9 0.05
146 33 0.18
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (143 bp):
CTGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTATCATGTAGTCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTATCAAACCAAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTC
TCGTATATCAATG
Found at i:74432060 original size:423 final size:423
Alignment explanation
Indices: 74431248--74432098 Score: 1077
Period size: 423 Copynumber: 2.0 Consensus size: 423
74431238 ACTTCAATCA
* *
74431248 AGCGATTATGCTTCCAATAGCTAAAATATGGATGCAGTTTATTTGCACTAAAATTACACCATCTC
1 AGCGACTATGCTTCCAATAGCTAAAATATGGATGCAGTTTATTTGCACTAAAATTACACCAACTC
*
74431313 TGAATGTCTTAATGTCAATACTTTTCGAGCTATGTTGCTATATGGAATTTTACAGAAAAATCAAA
66 TAAATGTCTTAATGTCAATACTTTTCGAGCTATGTTGCTATATGGAATTTTACAGAAAAATCAAA
*
74431378 TATGCATTGGAGAATGGATCCATCAAAATATGAAACGATGTGTTAGCGGCTAGAAGCTTAGGATT
131 TATGCATTGGAGAAGGGATCCATCAAAATATGAAACGATGTGTTAGCGGCTAGAAGCTTAGGATT
** * * *
74431443 TTCTTTCCCCATCTTGTAATGACATTAGACAAATAAGCTAGAGATCTTATAAAAGAGAATGAGCA
196 TTCTTTCCCCATCTTGTAACAACAATAGACAAACAAGCTAGAGATCCTATAAAAGAGAATGAGCA
* *** * * * *
74431508 GTTTATGTGACCGGTAAAGAGCCTAATAGGCTACTCTATCTACACATAGTACGTAGAGCACAATC
261 GTTTATATGACCAAAAAAGAGCCTAATAGGCTACTCTATCTACACACAATACGTAAAGCACAACC
* * * * * * *
74431573 GGAAACAGATTAAAGATTGGAACCAAATGAGAAAAGTAAAGACGGGCATCCTGACTTCGCTTAAA
326 AGAAACAAATTAAAGATAGAAACCAAAGGAGAAAAGAAAAGACGGACATCCTGACTTCGCTTAAA
* * *
74431638 TGAAAAGTAAGACCGACACCTTGAAAAGAAATT
391 CGAAAAGTAAGACCAACACCTTGAAAAGAAACT
* * * *
74431671 AGCGACTATGCTTTCAATAGCTAAAATGTGGATGCAGTTTATTTGTACTAGAATTACACCAACTC
1 AGCGACTATGCTTCCAATAGCTAAAATATGGATGCAGTTTATTTGCACTAAAATTACACCAACTC
* *
74431736 TAAATGTCTTTAATGTCAATACTTTTCGAGCTATTTTGCTATATGGAATTTTGCAGAAAAAAT-A
66 TAAATGTC-TTAATGTCAATACTTTTCGAGCTATGTTGCTATATGGAATTTTACAG-AAAAATCA
* * *
74431800 AATATGCATTGGAGAAGGGATCCATCAGAATATGAAACGATGCT-TTAGCTGCTAGAAGGTTA-G
129 AATATGCATTGGAGAAGGGATCCATCAAAATATGAAACGATG-TGTTAGCGGCTAGAAGCTTAGG
* * * * * *
74431863 ATTTTCTTTCCTCATCTTGTGACAACAATATG-TAAACATGTTAGAGTTCCTATAGAAA-AGAAT
193 ATTTTCTTTCCCCATCTTGTAACAACAATA-GACAAACAAGCTAGAGATCCTATA-AAAGAGAAT
* * * * *
74431926 GAGTAGTTTATATGACCAAAAAAGAGCTTAATAGG-TGACTCTATGTACACACAATTCGTAAAGT
256 GAGCAGTTTATATGACCAAAAAAGAGCCTAATAGGCT-ACTCTATCTACACACAATACGTAAAGC
* * * * * * * *
74431990 TCAACCAGAAACAAATTAAAGATAGAAACTATAGGAGAAAAGAAAATATGGACGT-CTTAGCTTT
320 ACAACCAGAAACAAATTAAAGATAGAAACCAAAGGAGAAAAGAAAAGACGGACATCCTGA-CTTC
* *
74432054 GCTTAAACGAAAAGTAAGATCAACGCCTTGAAAAGAAACT
384 GCTTAAACGAAAAGTAAGACCAACACCTTGAAAAGAAACT
74432094 AGCGA
1 AGCGA
74432099 GAGTAGCATT
Statistics
Matches: 364, Mismatches: 57, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
422 4 0.01
423 247 0.68
424 106 0.29
425 7 0.02
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (423 bp):
AGCGACTATGCTTCCAATAGCTAAAATATGGATGCAGTTTATTTGCACTAAAATTACACCAACTC
TAAATGTCTTAATGTCAATACTTTTCGAGCTATGTTGCTATATGGAATTTTACAGAAAAATCAAA
TATGCATTGGAGAAGGGATCCATCAAAATATGAAACGATGTGTTAGCGGCTAGAAGCTTAGGATT
TTCTTTCCCCATCTTGTAACAACAATAGACAAACAAGCTAGAGATCCTATAAAAGAGAATGAGCA
GTTTATATGACCAAAAAAGAGCCTAATAGGCTACTCTATCTACACACAATACGTAAAGCACAACC
AGAAACAAATTAAAGATAGAAACCAAAGGAGAAAAGAAAAGACGGACATCCTGACTTCGCTTAAA
CGAAAAGTAAGACCAACACCTTGAAAAGAAACT
Found at i:74437516 original size:2 final size:2
Alignment explanation
Indices: 74437509--74437546 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
74437499 TGAAGCTTAC
* *
74437509 AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74437547 TTAAATGTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:74438900 original size:34 final size:32
Alignment explanation
Indices: 74438862--74438940 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 32
74438852 TTTTAGAATT
74438862 TTTTATATTTTTATAATTTTTATTTTAAAAAAT-A
1 TTTTATATTTTTATAA--TTT-TTTTAAAAAATAA
*
74438896 TTTTAT-TTTTATTTAATTTTTTTAAAAAATAA
1 TTTTATATTTT-TATAATTTTTTTAAAAAATAA
* *
74438928 TTATATACTTTTA
1 TTTTATATTTTTA
74438941 AAGGATAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
31 11 0.29
32 10 0.26
33 7 0.18
34 10 0.26
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (32 bp):
TTTTATATTTTTATAATTTTTTTAAAAAATAA
Found at i:74438916 original size:17 final size:17
Alignment explanation
Indices: 74438861--74438916 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
74438851 TTTTTAGAAT
74438861 TTTTTATATTTT-TATAA
1 TTTTTAT-TTTTATATAA
* *
74438878 TTTTTA-TTTTAAAAAA
1 TTTTTATTTTTATATAA
*
74438894 TATTTTATTTTTATTTAA
1 T-TTTTATTTTTATATAA
74438912 TTTTT
1 TTTTT
74438917 TTAAAAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 4 0.13
16 4 0.13
17 15 0.48
18 8 0.26
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTATTTTTATATAA
Found at i:74438917 original size:18 final size:18
Alignment explanation
Indices: 74438858--74438917 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
74438848 GCATTTTTAG
74438858 AATTTTTTATATTTT-TAT
1 AATTTTTTAT-TTTTATAT
* *
74438876 AA-TTTTTA-TTTTAAAA
1 AATTTTTTATTTTTATAT
* *
74438892 AATATTTTATTTTTATTT
1 AATTTTTTATTTTTATAT
74438910 AATTTTTT
1 AATTTTTT
74438918 TAAAAAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
15 4 0.12
16 3 0.09
17 11 0.34
18 14 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
AATTTTTTATTTTTATAT
Found at i:74439587 original size:11 final size:10
Alignment explanation
Indices: 74439547--74439598 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
74439537 ATTATTAAAA
74439547 ATAATTTAAT
1 ATAATTTAAT
* *
74439557 AAAATAATAA-
1 ATAAT-TTAAT
74439567 ATAATTTAAT
1 ATAATTTAAT
*
74439577 CATATTTTAAT
1 -ATAATTTAAT
74439588 ATAATTTAAT
1 ATAATTTAAT
74439598 A
1 A
74439599 AAAATAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
9 3 0.09
10 18 0.55
11 12 0.36
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (10 bp):
ATAATTTAAT
Found at i:74439592 original size:41 final size:44
Alignment explanation
Indices: 74439534--74439639 Score: 121
Period size: 41 Copynumber: 2.5 Consensus size: 44
74439524 TTTTAATGGG
* *
74439534 ATAATTA-TTAAAAATAATTTAAT-AAAAT-AATAAATAATTTA
1 ATAATTATTTTAATATAATTTAATAAAAATAAATAAATAATTTA
* *
74439575 ATCA-TATTTTAATATAATTTAATAAAAATAAAAATATATAATTTA
1 ATAATTATTTTAATATAATTTAATAAAAAT--AAATAAATAATTTA
*
74439620 ATAATTTTTTTAATATAATT
1 ATAATTATTTTAATATAATT
74439640 ATTTTTATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 2 0.04
41 17 0.32
42 5 0.09
45 15 0.28
46 14 0.26
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (44 bp):
ATAATTATTTTAATATAATTTAATAAAAATAAATAAATAATTTA
Found at i:74440070 original size:13 final size:13
Alignment explanation
Indices: 74440052--74440083 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
74440042 CCAGTTTGGC
74440052 AATGCTTTTAAAA
1 AATGCTTTTAAAA
74440065 AATGCTTTTAAAA
1 AATGCTTTTAAAA
*
74440078 AGTGCT
1 AATGCT
74440084 GTGGAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (13 bp):
AATGCTTTTAAAA
Found at i:74440099 original size:39 final size:39
Alignment explanation
Indices: 74440056--74440132 Score: 91
Period size: 39 Copynumber: 2.0 Consensus size: 39
74440046 TTTGGCAATG
*
74440056 CTTTTAAAAAATGCTTTTAAAAAGTGCTGTGGAAAAATA
1 CTTTTAAAAAATACTTTTAAAAAGTGCTGTGGAAAAATA
* * * * * *
74440095 CTTTTGAGAAGTACTTTTGAGAAGTGCTTTGGAAAAAT
1 CTTTTAAAAAATACTTTTAAAAAGTGCTGTGGAAAAAT
74440133 TTAAGTGTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (39 bp):
CTTTTAAAAAATACTTTTAAAAAGTGCTGTGGAAAAATA
Found at i:74440109 original size:13 final size:13
Alignment explanation
Indices: 74440093--74440124 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
74440083 TGTGGAAAAA
74440093 TACTTTTGAGAAG
1 TACTTTTGAGAAG
74440106 TACTTTTGAGAAG
1 TACTTTTGAGAAG
*
74440119 TGCTTT
1 TACTTT
74440125 GGAAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (13 bp):
TACTTTTGAGAAG
Found at i:74440673 original size:8 final size:9
Alignment explanation
Indices: 74440654--74440679 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
74440644 AGCTTATCCT
74440654 AAAAATTAA
1 AAAAATTAA
74440663 AAAAATTAA
1 AAAAATTAA
74440672 AAAAATTA
1 AAAAATTA
74440680 CCCTATATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATTAA
Found at i:74440720 original size:17 final size:17
Alignment explanation
Indices: 74440698--74440731 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
74440688 GTATTGTTCG
74440698 GTAC-TTTTAAAAGAAAA
1 GTACTTTTTAAAA-AAAA
74440715 GTACTTTTTAAAAAAAA
1 GTACTTTTTAAAAAAAA
74440732 TTTATCCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (17 bp):
GTACTTTTTAAAAAAAA
Found at i:74450465 original size:34 final size:34
Alignment explanation
Indices: 74450423--74450498 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
74450413 TTAGCCCATT
*
74450423 TTTCAGTAACAGTACCAGTCTAGGCATGAGCCCA
1 TTTCAGTAACAGAACCAGTCTAGGCATGAGCCCA
* ** * * *
74450457 TTTCAGTAATAGAAGTAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGAACCAGTCTAGGCATGAGCCCA
74450491 TTTCAGTA
1 TTTCAGTA
74450499 TAGTATGTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (34 bp):
TTTCAGTAACAGAACCAGTCTAGGCATGAGCCCA
Found at i:74451889 original size:3 final size:3
Alignment explanation
Indices: 74451881--74451908 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
74451871 AGAGAAAAGG
74451881 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA A
74451909 TATGCTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:74454913 original size:48 final size:48
Alignment explanation
Indices: 74454861--74455082 Score: 246
Period size: 48 Copynumber: 4.6 Consensus size: 48
74454851 AGATCCTGTA
* * * * *
74454861 TAAGACCATATTTGGGATATGGCATCGGTATTGATACGTGATCCCATG
1 TAAGACCATGTTTGGGATATGGCATTGGCATCGATATGTGATCCCATG
* * * *
74454909 TAAGACCATGGTTGGGACATGGCATTGGCATCGATATGTGGTCCCGTG
1 TAAGACCATGTTTGGGATATGGCATTGGCATCGATATGTGATCCCATG
* *
74454957 TAAGACCATGTTTGGGATATGGTATTGGCATCGTTATGTGATCCCATG
1 TAAGACCATGTTTGGGATATGGCATTGGCATCGATATGTGATCCCATG
* * * ** * *
74455005 TAAGACCATGTCTGGGACATGGTATTGGCATCGATAAATGGTCCCATA
1 TAAGACCATGTTTGGGATATGGCATTGGCATCGATATGTGATCCCATG
* ***
74455053 TAAGACCATATCCAGGATATGGCATTGGCA
1 TAAGACCATGTTTGGGATATGGCATTGGCA
74455083 CCCTACTATG
Statistics
Matches: 147, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 147 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
TAAGACCATGTTTGGGATATGGCATTGGCATCGATATGTGATCCCATG
Found at i:74455025 original size:96 final size:96
Alignment explanation
Indices: 74454859--74455082 Score: 288
Period size: 96 Copynumber: 2.3 Consensus size: 96
74454849 TGAGATCCTG
* *
74454859 TATAAGACCATATTTGGGATATGGCATCGGTATTGATACGTGATCCCATGTAAGACCATGGTTGG
1 TATAAGACCATATTTGGGATATGGCATCGGCATCGATACGTGATCCCATGTAAGACCATGGTTGG
** *
74454924 GACATGGCATTGGCATCGATATGTGGTCCCG
66 GACATGGCATTGGCATCGATAAATGGTCCCA
* * * * * *
74454955 TGTAAGACCATGTTTGGGATATGGTATTGGCATCGTTATGTGATCCCATGTAAGACCAT-GTCTG
1 TATAAGACCATATTTGGGATATGGCATCGGCATCGATACGTGATCCCATGTAAGACCATGGT-TG
*
74455019 GGACATGGTATTGGCATCGATAAATGGTCCCA
65 GGACATGGCATTGGCATCGATAAATGGTCCCA
*** *
74455051 TATAAGACCATATCCAGGATATGGCATTGGCA
1 TATAAGACCATATTTGGGATATGGCATCGGCA
74455083 CCCTACTATG
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 2 0.02
96 107 0.98
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (96 bp):
TATAAGACCATATTTGGGATATGGCATCGGCATCGATACGTGATCCCATGTAAGACCATGGTTGG
GACATGGCATTGGCATCGATAAATGGTCCCA
Found at i:74457420 original size:16 final size:17
Alignment explanation
Indices: 74457379--74457424 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
74457369 CTAAATTTTA
*
74457379 AAATCCCCAACTCGTCC
1 AAATCCCCAAATCGTCC
* *
74457396 AATTCCCCAAATCGT-G
1 AAATCCCCAAATCGTCC
74457412 AAATCCCCAAATC
1 AAATCCCCAAATC
74457425 CATAACATCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.35, C:0.39, G:0.07, T:0.20
Consensus pattern (17 bp):
AAATCCCCAAATCGTCC
Found at i:74457544 original size:23 final size:23
Alignment explanation
Indices: 74457513--74457564 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
74457503 TACATTCTTT
* *
74457513 ATCCTTTAGAACCAAATTGTGAA
1 ATCCCTTAGAACCAAATCGTGAA
**
74457536 ATCCCTTAGAAGTAAATCGTGAA
1 ATCCCTTAGAACCAAATCGTGAA
74457559 ATCCCT
1 ATCCCT
74457565 AATCTTTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (23 bp):
ATCCCTTAGAACCAAATCGTGAA
Found at i:74457583 original size:29 final size:29
Alignment explanation
Indices: 74457541--74457600 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
74457531 GTGAAATCCC
74457541 TTAGAAGTAAATCGTGAAATCCCTAATCT
1 TTAGAAGTAAATCGTGAAATCCCTAATCT
74457570 TTAGAAGTAAATCGTGAAATCCCTAATCT
1 TTAGAAGTAAATCGTGAAATCCCTAATCT
74457599 TT
1 TT
74457601 CTTCAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (29 bp):
TTAGAAGTAAATCGTGAAATCCCTAATCT
Found at i:74458808 original size:48 final size:47
Alignment explanation
Indices: 74458756--74458882 Score: 195
Period size: 46 Copynumber: 2.7 Consensus size: 47
74458746 CATTGGTGTA
*
74458756 TTCCAAAACCAGAATGTTGTAGGCTCAAAATGTGACTACTATCTTGT
1 TTCCAAAACCAGAATGTTGTAGGCTCAAAATGTGACTACCATCTTGT
74458803 GTTCCAAAACCAGAATG--GTAGGCTCAAAATGTGACTACCATCTTGT
1 -TTCCAAAACCAGAATGTTGTAGGCTCAAAATGTGACTACCATCTTGT
* *
74458849 ATCCTAAAACCAAAATGTTGTAGGCTCAAAATGT
1 TTCC-AAAACCAGAATGTTGTAGGCTCAAAATGT
74458883 TGTAGAGAGA
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
45 3 0.04
46 39 0.53
48 31 0.42
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (47 bp):
TTCCAAAACCAGAATGTTGTAGGCTCAAAATGTGACTACCATCTTGT
Found at i:74463215 original size:29 final size:27
Alignment explanation
Indices: 74463182--74463283 Score: 96
Period size: 29 Copynumber: 3.6 Consensus size: 27
74463172 ACTCAATCAT
*
74463182 GCACACTTAGTGCCATGTGATTCAAGCCC
1 GCACACTTAGTGCCAT-T-ATTCAAGCTC
* * *
74463211 GCACACATAGTGCCATATAGTCCAAACTC
1 GCACACTTAGTGCCAT-TA-TTCAAGCTC
*
74463240 GCACACTTAGTGCCATACATTACAAGCTC
1 GCACACTTAGTGCCAT-TATT-CAAGCTC
*
74463269 GCACACTCAGTGCCA
1 GCACACTTAGTGCCA
74463284 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (27 bp):
GCACACTTAGTGCCATTATTCAAGCTC
Found at i:74465012 original size:13 final size:13
Alignment explanation
Indices: 74464990--74465021 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
74464980 AGTATACGGA
*
74464990 CGTGTAGCATGGT
1 CGTGTGGCATGGT
74465003 CGTGTGGCATGGT
1 CGTGTGGCATGGT
74465016 CGTGTG
1 CGTGTG
74465022 TGCAAGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.09, C:0.16, G:0.44, T:0.31
Consensus pattern (13 bp):
CGTGTGGCATGGT
Found at i:74465447 original size:16 final size:16
Alignment explanation
Indices: 74465426--74465457 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74465416 TTATGATAGT
*
74465426 GTGATGACTCTTGATC
1 GTGATGACTCCTGATC
74465442 GTGATGACTCCTGATC
1 GTGATGACTCCTGATC
74465458 ATTTTAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.34
Consensus pattern (16 bp):
GTGATGACTCCTGATC
Found at i:74469003 original size:25 final size:25
Alignment explanation
Indices: 74468956--74469004 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
74468946 TCCAAGCTAA
*
74468956 TCAGGAAACTCATAAGAGTTTTTAC
1 TCAGGAAACTCATAAGAGCTTTTAC
*
74468981 TCAGGAAGCTCAT-AGAGCCTTTTA
1 TCAGGAAACTCATAAGAG-CTTTTA
74469005 GATATCTGCG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (25 bp):
TCAGGAAACTCATAAGAGCTTTTAC
Found at i:74470168 original size:19 final size:17
Alignment explanation
Indices: 74470136--74470170 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
74470126 ATAAGATGAT
74470136 ATTATCTATTTAATTTA
1 ATTATCTATTTAATTTA
74470153 ATTATCATATTTTAATTT
1 ATTATC-TA-TTTAATTT
74470171 TGTCACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTATCTATTTAATTTA
Found at i:74474538 original size:29 final size:29
Alignment explanation
Indices: 74474477--74474575 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
74474467 ACAGTAAGTC
74474477 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
74474505 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
74474534 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
74474562 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74474576 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:74475697 original size:17 final size:18
Alignment explanation
Indices: 74475660--74475697 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
74475650 CACTTTTTTT
74475660 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
74475679 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
74475696 TT
1 TT
74475698 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:74482414 original size:6 final size:6
Alignment explanation
Indices: 74482403--74482429 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
74482393 CACAAGATGA
74482403 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
74482430 TGTTCATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:74492002 original size:31 final size:31
Alignment explanation
Indices: 74491967--74492030 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
74491957 CCTTTTCATA
*
74491967 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCAAATTTCATAATACTGGGCCGAAGCCT
*
74491998 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAATACTGGGCCGAAGCCT
74492029 TT
1 TT
74492031 ACGGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAATACTGGGCCGAAGCCT
Found at i:74492276 original size:24 final size:24
Alignment explanation
Indices: 74492224--74492437 Score: 308
Period size: 24 Copynumber: 9.0 Consensus size: 24
74492214 GCTTTATCAT
* *
74492224 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
74492249 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
* *
74492273 ATAACTGAGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
**
74492296 ATAACTGGGGTGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
74492320 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
74492344 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
74492368 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
74492392 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
74492415 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74492438 CACTTCCTCC
Statistics
Matches: 173, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
23 41 0.24
24 120 0.69
25 12 0.07
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:74492509 original size:9 final size:9
Alignment explanation
Indices: 74492495--74492551 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
74492485 ATCTCGTGTG
74492495 CATATCATA
1 CATATCATA
*
74492504 CATATCATGTG
1 CATATCA--TA
74492515 CATATCATA
1 CATATCATA
* *
74492524 CATGTCATGTG
1 CATATCA--TA
74492535 CATATCATA
1 CATATCATA
74492544 CATATCAT
1 CATATCAT
74492552 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:74492514 original size:20 final size:20
Alignment explanation
Indices: 74492491--74492553 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
74492481 GAACATCTCG
74492491 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
74492511 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
74492531 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
74492551 TGT
1 TGT
74492554 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:74492636 original size:25 final size:25
Alignment explanation
Indices: 74492590--74492637 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
74492580 ATATATAAAC
* * * *
74492590 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74492615 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74492638 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74493888 original size:27 final size:27
Alignment explanation
Indices: 74493797--74493880 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
74493787 GGGCATATTC
* *
74493797 GTCATTTTACCATACAAGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
74493824 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
74493851 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
74493878 GTC
1 GTC
74493881 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:74493897 original size:27 final size:26
Alignment explanation
Indices: 74493797--74493890 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
74493787 GGGCATATTC
* *
74493797 GTCATTTTACCATACAAGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
74493824 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
74493851 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
74493878 GTCTTTTTACCTA
1 GTCACTTTACCTA
74493891 ATAGGGGTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.07
27 53 0.88
28 3 0.05
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:74493972 original size:27 final size:26
Alignment explanation
Indices: 74493942--74493997 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 26
74493932 GTAAATCTAC
74493942 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCAATAATTTT-T
* *
74493969 AAACCAATGGTATTTCTATAATTTTT
1 AAACCAAGGGTATTTCAATAATTTTT
74493995 AAA
1 AAA
74493998 AAGTCAAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (26 bp):
AAACCAAGGGTATTTCAATAATTTTT
Found at i:74494045 original size:27 final size:26
Alignment explanation
Indices: 74494015--74494129 Score: 90
Period size: 27 Copynumber: 4.3 Consensus size: 26
74494005 GGGTATTCCT
*
74494015 GTAACTTTGTAAATCAGGGGTATTTTG
1 GTAA-TTTATAAATCAGGGGTATTTTG
* * *
74494042 GTAATTTTAAAAAT-TGAGGGTATTTCG
1 GTAA-TTTATAAATCAG-GGGTATTTTG
* * *
74494069 GTAATTTCACAAACCAGTGGTATTTTG
1 GTAATTT-ATAAATCAGGGGTATTTTG
*
74494096 GTAATTT-TACAAACTAGGGGTATTTTG
1 GTAATTTATA-AATC-AGGGGTATTTTG
74494123 GTAATTT
1 GTAATTT
74494130 TACAAATTGA
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
25 1 0.01
26 7 0.10
27 61 0.87
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (26 bp):
GTAATTTATAAATCAGGGGTATTTTG
Found at i:74494143 original size:27 final size:27
Alignment explanation
Indices: 74494032--74494147 Score: 146
Period size: 27 Copynumber: 4.3 Consensus size: 27
74494022 TGTAAATCAG
*
74494032 GGGTATTTTGGTAATTTTAAAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
* * **
74494059 GGGTATTTCGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATTGA
*
74494085 GTGGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTGGTAATTTTACAAATTGA
74494112 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATTGA
74494140 GGGTATTT
1 GGGTATTT
74494148 CTATAAATCT
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
26 2 0.03
27 72 0.95
28 2 0.03
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:74494169 original size:27 final size:27
Alignment explanation
Indices: 74494151--74494400 Score: 140
Period size: 27 Copynumber: 8.9 Consensus size: 27
74494141 GGTATTTCTA
74494151 TAAATCTGTAAATCAAGGGTAAAATAG
1 TAAATCTGTAAATCAAGGGTAAAATAG
*
74494178 TAATTCTGTAAATCAAGGGTAAAATAG
1 TAAATCTGTAAATCAAGGGTAAAATAG
* * * * * *
74494205 TAATTCTATAAATCGATGGTAAAACAA
1 TAAATCTGTAAATCAAGGGTAAAATAG
* * * **
74494232 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAAATCTGTAAATCAAGGGTAAAATAG
* * *
74494259 TAATTCTGTAAGTCGAGGGTAAAACGGGGTAAAATGG
1 TAAATCTGTAAATCAAGGGTAAAA-----T---A--G
* * ** *
74494296 TAATTATGTAAATCGGGGGTAAAATGG
1 TAAATCTGTAAATCAAGGGTAAAATAG
* *
74494323 TAATTCTGTAAATCAAGGGTAAAACAG
1 TAAATCTGTAAATCAAGGGTAAAATAG
* * **
74494350 TAATTCTATAAATCAAGGGTAAAACGG
1 TAAATCTGTAAATCAAGGGTAAAATAG
** * *
74494377 TACTTCTATAAATCGAGGGTAAAA
1 TAAATCTGTAAATCAAGGGTAAAA
74494401 CGATAATTAT
Statistics
Matches: 185, Mismatches: 28, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
27 162 0.88
32 1 0.01
37 22 0.12
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAAATCTGTAAATCAAGGGTAAAATAG
Found at i:74494181 original size:81 final size:81
Alignment explanation
Indices: 74494030--74494182 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 81
74494020 TTTGTAAATC
* * ***
74494030 AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGATAATTTCACAAACAAGTGGTAAAAT
*
74494095 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
* * *
74494111 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTATAAATCTGT-A-AATCAAG-GGTAA
1 AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGAT-AAT-T-TCACAAACAAGTGGTAA
74494173 AATAGTAATT
63 AATAGTAATT
74494183 CTGTAAATCA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
81 49 0.82
82 8 0.13
83 2 0.03
84 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCGATAATTTCACAAACAAGTGGTAAAAT
AGTAATTTTACAAACT
Found at i:74494208 original size:81 final size:81
Alignment explanation
Indices: 74494123--74494424 Score: 226
Period size: 81 Copynumber: 3.6 Consensus size: 81
74494113 GGGTATTTTG
* * *** * *
74494123 GTAATTTTACAAATTGAGGGTATTTCTATAAATCTGTAAATCAAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTACAAATCGAGGGTAAAACAATAAATCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
74494188 AATCAAGGGTAAAATA
66 AATCAAGGGTAAAATA
* * * * * *
74494204 GTAATTCTATAAATCGATGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTACAAATCGAGGGTAAAACAATAAATCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
* *
74494269 AGTCGAGGGTAAAACGGGGTAAAATG
66 A----A---T-CAA--GGGTAAAATA
* ** * *** * *
74494295 GTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTACAAATCGAGGGTAAAACAATAAATCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
**
74494360 AATCAAGGGTAAAACG
66 AATCAAGGGTAAAATA
* * * * * *
74494376 GTACTTCTATAAATCGAGGGTAAAACGATAATTATGTAAATCAGGGGTA
1 GTAATTCTACAAATCGAGGGTAAAACAATAAATCTGTAAATCAAGGGTA
74494425 CTTTGGTAAT
Statistics
Matches: 175, Mismatches: 36, Indels: 20
0.76 0.16 0.09
Matches are distributed among these distances:
81 103 0.59
83 2 0.01
84 1 0.01
85 1 0.01
87 1 0.01
88 1 0.01
89 2 0.01
91 64 0.37
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTCTACAAATCGAGGGTAAAACAATAAATCTGTAAATCAAGGGTAAAACAGTAATTCTGTA
AATCAAGGGTAAAATA
Found at i:74494217 original size:54 final size:54
Alignment explanation
Indices: 74494159--74494424 Score: 237
Period size: 54 Copynumber: 4.7 Consensus size: 54
74494149 TATAAATCTG
* * **
74494159 TAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTA
1 TAAATCAAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTA
* * * * * *
74494213 TAAATCGATGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCAAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTA
* * ** * *
74494267 TAAGTCGAGGGTAAAACGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTG
1 TAAATCAAGGGTAAAAC--------A--GTAATTATGTAAATCAAGGGTAAAACGGTAATTCTA
* * *
74494331 TAAATCAAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTACTTCTA
1 TAAATCAAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTA
* *
74494385 TAAATCGAGGGTAAAAC-GATAATTATGTAAATCAGGGGTA
1 TAAATCAAGGGTAAAACAG-TAATTATGTAAATCAAGGGTA
74494425 CTTTGGTAAT
Statistics
Matches: 173, Mismatches: 28, Indels: 22
0.78 0.13 0.10
Matches are distributed among these distances:
53 1 0.01
54 123 0.71
56 1 0.01
62 1 0.01
64 47 0.27
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (54 bp):
TAAATCAAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTA
Found at i:74494289 original size:37 final size:38
Alignment explanation
Indices: 74494239--74494319 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 38
74494229 CAATAATTTT
* * *
74494239 GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
* *
74494277 GTAAAACG-GGGTAAAATGGTAATTATGTAAATCGGGG
1 GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
74494314 GTAAAA
1 GTAAAA
74494320 TGGTAATTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
37 31 0.82
38 7 0.18
ACGTcount: A:0.38, C:0.07, G:0.31, T:0.23
Consensus pattern (38 bp):
GTAAAACGAGGGTAAAACGGTAATTATGTAAATCGAGG
Found at i:74494308 original size:91 final size:91
Alignment explanation
Indices: 74494194--74494376 Score: 240
Period size: 91 Copynumber: 2.0 Consensus size: 91
74494184 TGTAAATCAA
* * * * *
74494194 GGGTAAAATAGTAATTCTATAAATCGATGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTATATAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAG
* * *
74494259 TAATTCTGTAAGTCGAGGGTAAAACG
66 TAATTCTATAAATCAAGGGTAAAACG
* * * ***
74494285 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTATATAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAG
74494350 TAATTCTATAAATCAAGGGTAAAACG
66 TAATTCTATAAATCAAGGGTAAAACG
74494376 G
1 G
74494377 TACTTCTATA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
91 78 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (91 bp):
GGGTAAAATAGTAATTATATAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACAG
TAATTCTATAAATCAAGGGTAAAACG
Found at i:74494375 original size:118 final size:118
Alignment explanation
Indices: 74494167--74494402 Score: 337
Period size: 118 Copynumber: 2.0 Consensus size: 118
74494157 TGTAAATCAA
* * *
74494167 GGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGATGGTAAAACAA
1 GGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAA
* * * * *
74494232 TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACG
66 TAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* ** * * *
74494285 GGGTAAAATGGTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAA
*
74494350 TAATTCTATAAATCAAGGGTAAAACGGTACTTCTATAAATCGAGGGTAAAACG
66 TAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
74494403 ATAATTATGT
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 103 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (118 bp):
GGGTAAAATAGTAATTATGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAA
TAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:74494401 original size:27 final size:27
Alignment explanation
Indices: 74494285--74494424 Score: 154
Period size: 27 Copynumber: 5.2 Consensus size: 27
74494275 GGGTAAAACG
* * * **
74494285 GGGTAAAATGGTAATTATGTAAATCGG
1 GGGTAAAACGGTAATTCTATAAATCAA
* *
74494312 GGGTAAAATGGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTATAAATCAA
*
74494339 GGGTAAAACAGTAATTCTATAAATCAA
1 GGGTAAAACGGTAATTCTATAAATCAA
* *
74494366 GGGTAAAACGGTACTTCTATAAATCGA
1 GGGTAAAACGGTAATTCTATAAATCAA
* * * *
74494393 GGGTAAAACGATAATTATGTAAATCAG
1 GGGTAAAACGGTAATTCTATAAATCAA
74494420 GGGTA
1 GGGTA
74494425 CTTTGGTAAT
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.27
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTATAAATCAA
Found at i:74494424 original size:145 final size:145
Alignment explanation
Indices: 74494157--74494421 Score: 397
Period size: 145 Copynumber: 1.8 Consensus size: 145
74494147 TCTATAAATC
* * *
74494157 TGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAT
1 TGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
* * * * *
74494222 GGTAAAACAATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGGG
66 GGTAAAACAATAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGG
74494287 GTAAAATGGTAATTA
131 GTAAAATGGTAATTA
** *
74494302 TGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
1 TGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
** *
74494367 GGTAAAACGGTACTTCTATAAATCGAGGGTAAAACGATAATTATGTAAATC-AGGG
66 GGTAAAACAATAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGG
74494422 GTACTTTGGT
Statistics
Matches: 106, Mismatches: 14, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
144 4 0.04
145 102 0.96
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.28
Consensus pattern (145 bp):
TGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCAAG
GGTAAAACAATAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAACGGG
GTAAAATGGTAATTA
Found at i:74497430 original size:13 final size:13
Alignment explanation
Indices: 74497412--74497440 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74497402 TTTATTTTAA
74497412 TTAGTTAATTAGT
1 TTAGTTAATTAGT
74497425 TTAGTTAATTAGT
1 TTAGTTAATTAGT
74497438 TTA
1 TTA
74497441 ATAAGCAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:74502271 original size:27 final size:26
Alignment explanation
Indices: 74502206--74502318 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
74502196 TAGCATGGCT
* **
74502206 ACCAGAACAGATAATGTGACAGAGTT
1 ACCAGAACAGATAATGTGGCAGAGCC
*
74502232 ACTAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
*
74502260 ACCAGAATAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
74502287 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
74502314 ACCAG
1 ACCAG
74502319 GACGCTTACT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 15 0.20
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:74502272 original size:54 final size:54
Alignment explanation
Indices: 74502206--74502318 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
74502196 TAGCATGGCT
** *
74502206 ACCAGAACAGATA-ATGTGACAGAGTTACTAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * * *
74502260 ACCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
74502314 ACCAG
1 ACCAG
74502319 GACGCTTACT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 35 0.69
55 16 0.31
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:74502761 original size:8 final size:8
Alignment explanation
Indices: 74502734--74502764 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
74502724 TCAAAATACT
74502734 GGCTTTTC
1 GGCTTTTC
*
74502742 GGCATTTC
1 GGCTTTTC
74502750 GGCTTTTC
1 GGCTTTTC
74502758 GGCTTTT
1 GGCTTTT
74502765 ACCGATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GGCTTTTC
Found at i:74505722 original size:9 final size:9
Alignment explanation
Indices: 74505710--74505766 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
74505700 TTTGATAAAC
74505710 ATGATATGT
1 ATGATATGT
*
74505719 ATGATATGCAC
1 ATGATATG--T
*
74505730 ATGACATGT
1 ATGATATGT
*
74505739 ATGATATGCAC
1 ATGATATG--T
74505750 ATGATATGT
1 ATGATATGT
74505759 ATGATATG
1 ATGATATG
74505767 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:74505733 original size:20 final size:20
Alignment explanation
Indices: 74505708--74505778 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
74505698 ATTTTGATAA
74505708 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74505728 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
74505748 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74505768 ACATGAGATGT
1 ACATGATATGT
74505779 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74505755 original size:11 final size:11
Alignment explanation
Indices: 74505719--74505773 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74505709 CATGATATGT
74505719 ATGATATGCAC
1 ATGATATGCAC
* *
74505730 ATGACATG--T
1 ATGATATGCAC
74505739 ATGATATGCAC
1 ATGATATGCAC
*
74505750 ATGATATG--T
1 ATGATATGCAC
74505759 ATGATATGCAC
1 ATGATATGCAC
74505770 ATGA
1 ATGA
74505774 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74505880 original size:24 final size:24
Alignment explanation
Indices: 74505823--74506013 Score: 280
Period size: 24 Copynumber: 8.0 Consensus size: 24
74505813 GGAGGAAGTG
*
74505823 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74505847 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
74505870 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
74505894 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
74505918 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74505942 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
74505965 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
74505989 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
74506014 ATGATAAAGC
Statistics
Matches: 155, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 101 0.65
25 11 0.07
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:74505892 original size:47 final size:47
Alignment explanation
Indices: 74505823--74505992 Score: 295
Period size: 47 Copynumber: 3.6 Consensus size: 47
74505813 GGAGGAAGTG
*
74505823 CAAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
74505870 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
74505918 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
74505965 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
74505993 AGAGGCTAGG
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
47 71 0.61
48 46 0.39
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:74505947 original size:71 final size:71
Alignment explanation
Indices: 74505823--74506013 Score: 278
Period size: 71 Copynumber: 2.7 Consensus size: 71
74505813 GGAGGAAGTG
* *
74505823 CAAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
74505888 AGTTAT
66 AGTTAT
*
74505894 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCC
74505958 CAGTTAT
65 CAGTTAT
* * *
74505965 TAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
74506014 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
71 76 0.69
72 34 0.31
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:74506242 original size:31 final size:31
Alignment explanation
Indices: 74506206--74506269 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
74506196 CGTTTACAGC
* *
74506206 AAAGGCTTCGGGCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
74506237 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74506268 AA
1 AA
74506270 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:74508685 original size:16 final size:17
Alignment explanation
Indices: 74508654--74508696 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
74508644 CGTACATGAG
74508654 AGAAACAAAAACAAAGAA
1 AGAAA-AAAAACAAAGAA
74508672 AGAAAAAAAA-AAAGAA
1 AGAAAAAAAACAAAGAA
74508688 AGGAAAAAA
1 A-GAAAAAA
74508697 GTGTTCATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.29
17 12 0.50
18 5 0.21
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAACAAAGAA
Found at i:74509140 original size:40 final size:40
Alignment explanation
Indices: 74509081--74509187 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
74509071 CAATTGAATG
* * * *
74509081 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
74509121 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
74509161 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
74509188 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:74509207 original size:40 final size:39
Alignment explanation
Indices: 74509122--74509248 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
74509112 CTGGAAATTA
* * *
74509122 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
74509160 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
74509202 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
74509242 TATCCGG
1 TATCCGG
74509249 TTGTATTCTG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:74511795 original size:40 final size:38
Alignment explanation
Indices: 74511746--74511889 Score: 137
Period size: 40 Copynumber: 3.7 Consensus size: 38
74511736 TGCTGGAAAT
* * *
74511746 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTCG
*
74511785 CTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTC-G
* * *
74511826 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAATCG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
* * *
74511864 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
74511890 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 26 0.30
40 58 0.67
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
Found at i:74511915 original size:79 final size:80
Alignment explanation
Indices: 74511751--74511934 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 80
74511741 GAAATTATAA
* * * *
74511751 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
74511816 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAT
* * * * *
74511831 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
* *
74511894 GTGCGGGTTA-CCATAT
65 GTGCGAGTCATCC-TAT
* * *
74511910 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
74511935 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.68
80 26 0.30
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAT
Found at i:74513913 original size:596 final size:595
Alignment explanation
Indices: 74512740--74513930 Score: 1997
Period size: 596 Copynumber: 2.0 Consensus size: 595
74512730 AAATTTGTAG
* * * * *
74512740 GAATGGTATTAAATAGTGAATCAGCTATGTAAATGAACTTGATGAGTCTATTTTCATATGGAAGA
1 GAATGGTATTAAATAATGAATAAACTATGTAAATGAACTTAATGAGTCTACTTTCATATGGAAGA
* * * *
74512805 AACGAAATGGTCATAGGAGTTACTTGTTAAGAGATATTAAAGCTATTGTGAGACAGGGCCAGAAT
66 AACGAAACGGTCATAGGAGTTACATGTTAAGAGATATTAAAGCTATTGTGAGACAGGACCAGAAC
74512870 GGTTTCTGGGTCCCCTGTCGCAACTTTAAAAATTTACTATAAATTATCCAGAAAGAATTAGGAGT
131 GGTTTCTGGGTCCCCTGTCGCAACTTTAAAAATTTACTATAAATTATCCAGAAAGAATTAGGAGT
*
74512935 CATTCCTTATATGTGCAGATTCCATTTTGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATT
196 CATTCCTTATATGTACAGATTCCATTTTGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATT
*
74513000 AAAGCCCTGTACAGAGAGATATTCAAGTTGTAACACGTGAAGGTCAGAGCAGTCGATCCCTGTAA
261 AAAGCCCTGTACAGAGAGATATTCAAGTTGTAACACGCGAAGGTCAGAGCAGTCGATCCCTGTAA
* *
74513065 CATGGGTGACTTTAACTAATAAACTGTACAAATTGGCCTGACAAAAAATTCTAGAAATAAATCCA
326 CATGGGTGACTTTAAATAATAAACTGTACAAATTGGCCCGACAAAAAATTCTAGAAATAAATCCA
* *
74513130 TGGATGGATATATGAGTCTAAATTCAGGGAAAATTTACGAAACCAGTTTCTGAGTTTTGAAACTC
391 TGGATGGATATATGAGTCTAAATTCAGGAAAAATTTACGAAACCAGTTTCCGAGTTTTGAAACTC
*
74513195 GAGATATGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCCGACTGGAAATGTCAAATTGGTG
456 GAGATATGATTTTTAAGGCGACAGTGACGCAGATTTCCAGCCCGACTGGAAATGTCAAATTGGTG
*
74513260 GGCAAAATATGTGGACTTGGCTTGTTAACCCCTCGTGTCCGACACCGGTGATGGTCTCGGGATT-
521 GGCAAAATATGTGGACTTGGCTTGTTAACCCCTCGTGTCCGACACCGGCGATGGTCTCGGG-TTC
74513324 GGGGTGTTACA
585 GGGGTGTTACA
* * * *
74513335 GAATGGTATTAAATAATGAATAAATTATGTAAATGAACCTTAATGAGTCTACTTTCGTGTGGAAT
1 GAATGGTATTAAATAATGAATAAACTATGTAAATGAA-CTTAATGAGTCTACTTTCATATGGAAG
*
74513400 AAACGAAACGGTCATAGGAGTTACATGTTAAGAGATATTAAAGCTATTGTGAGATAGGACCAGAA
65 AAACGAAACGGTCATAGGAGTTACATGTTAAGAGATATTAAAGCTATTGTGAGACAGGACCAGAA
* *
74513465 CGGTTTCTGGGTCCCCTGTTGCAACTTTAAAAATTTATTATAAATTATCCAGAAAGAATTAGGAG
130 CGGTTTCTGGGTCCCCTGTCGCAACTTTAAAAATTTACTATAAATTATCCAGAAAGAATTAGGAG
*
74513530 TCATTCCTTATATGTACAGATTCCATTTTGAGTCTAGTTTCATTAGAAATAAACGGCACCAGTAT
195 TCATTCCTTATATGTACAGATTCCATTTTGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTAT
**
74513595 TAAAGCCCTGTACAGAGAGATATTCAAGTTGTAACGTGCGAAGGTCAGAGCAGTCGATCCCTGTA
260 TAAAGCCCTGTACAGAGAGATATTCAAGTTGTAACACGCGAAGGTCAGAGCAGTCGATCCCTGTA
* * *
74513660 ACATGGGTGACTTTAAATAATAAACTGTACCAATTGGCCCGACCAAAAATTCTAGAATTAAATCC
325 ACATGGGTGACTTTAAATAATAAACTGTACAAATTGGCCCGACAAAAAATTCTAGAAATAAATCC
* * *
74513725 ATGGATGTATATATGAGTCTAAATTCAGGAAAAATTTACGGAATCAGTTTCCGAGTTTTGAAACT
390 ATGGATGGATATATGAGTCTAAATTCAGGAAAAATTTACGAAACCAGTTTCCGAGTTTTGAAACT
* * * *
74513790 CGAGATATGATTTTTAAGGTGATAGTGACGCAGATTTCCAGCCTGTCTGGAAATGTCAAATTGGT
455 CGAGATATGATTTTTAAGGCGACAGTGACGCAGATTTCCAGCCCGACTGGAAATGTCAAATTGGT
** *
74513855 GGGTGAAATATGTGGATTTGGCTTGTTAACCCCTCGTGTCCGACACCGGCGATGGTCTCGGGTTC
520 GGGCAAAATATGTGGACTTGGCTTGTTAACCCCTCGTGTCCGACACCGGCGATGGTCTCGGGTTC
74513920 GGGGTGTTACA
585 GGGGTGTTACA
74513931 AGGCCCACTA
Statistics
Matches: 554, Mismatches: 40, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
595 35 0.06
596 519 0.94
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (595 bp):
GAATGGTATTAAATAATGAATAAACTATGTAAATGAACTTAATGAGTCTACTTTCATATGGAAGA
AACGAAACGGTCATAGGAGTTACATGTTAAGAGATATTAAAGCTATTGTGAGACAGGACCAGAAC
GGTTTCTGGGTCCCCTGTCGCAACTTTAAAAATTTACTATAAATTATCCAGAAAGAATTAGGAGT
CATTCCTTATATGTACAGATTCCATTTTGAGTCTAGTTTCATTAGAAACAAACGGCACCAGTATT
AAAGCCCTGTACAGAGAGATATTCAAGTTGTAACACGCGAAGGTCAGAGCAGTCGATCCCTGTAA
CATGGGTGACTTTAAATAATAAACTGTACAAATTGGCCCGACAAAAAATTCTAGAAATAAATCCA
TGGATGGATATATGAGTCTAAATTCAGGAAAAATTTACGAAACCAGTTTCCGAGTTTTGAAACTC
GAGATATGATTTTTAAGGCGACAGTGACGCAGATTTCCAGCCCGACTGGAAATGTCAAATTGGTG
GGCAAAATATGTGGACTTGGCTTGTTAACCCCTCGTGTCCGACACCGGCGATGGTCTCGGGTTCG
GGGTGTTACA
Found at i:74515795 original size:13 final size:13
Alignment explanation
Indices: 74515777--74515805 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74515767 TTTAGTTTAA
74515777 TTAGTTAATTAGT
1 TTAGTTAATTAGT
74515790 TTAGTTAATTAGT
1 TTAGTTAATTAGT
74515803 TTA
1 TTA
74515806 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:74541436 original size:22 final size:19
Alignment explanation
Indices: 74541411--74541458 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 19
74541401 TACTATTTCG
74541411 ATTAAATTCTTGTCAAAAAATA
1 ATTAAATT-TT-T-AAAAAATA
*
74541433 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTAAAAAATA
74541451 ATTAAATT
1 ATTAAATT
74541459 ATACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.42
19 5 0.21
20 2 0.08
21 4 0.17
22 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (19 bp):
ATTAAATTTTTAAAAAATA
Found at i:74544390 original size:110 final size:110
Alignment explanation
Indices: 74544197--74544418 Score: 444
Period size: 110 Copynumber: 2.0 Consensus size: 110
74544187 GTATGTACTA
74544197 AAACCCTATAAGGACTTAGTATATGAAAAGATATGTATTTGGATAAGCATGTGTATATGAATAGG
1 AAACCCTATAAGGACTTAGTATATGAAAAGATATGTATTTGGATAAGCATGTGTATATGAATAGG
74544262 GAAAGTAAGTATATGTATGACATAATGAAAAGTATCATAATGGAT
66 GAAAGTAAGTATATGTATGACATAATGAAAAGTATCATAATGGAT
74544307 AAACCCTATAAGGACTTAGTATATGAAAAGATATGTATTTGGATAAGCATGTGTATATGAATAGG
1 AAACCCTATAAGGACTTAGTATATGAAAAGATATGTATTTGGATAAGCATGTGTATATGAATAGG
74544372 GAAAGTAAGTATATGTATGACATAATGAAAAGTATCATAATGGAT
66 GAAAGTAAGTATATGTATGACATAATGAAAAGTATCATAATGGAT
74544417 AA
1 AA
74544419 GAAATTATGC
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 112 1.00
ACGTcount: A:0.43, C:0.06, G:0.21, T:0.30
Consensus pattern (110 bp):
AAACCCTATAAGGACTTAGTATATGAAAAGATATGTATTTGGATAAGCATGTGTATATGAATAGG
GAAAGTAAGTATATGTATGACATAATGAAAAGTATCATAATGGAT
Found at i:74551154 original size:53 final size:53
Alignment explanation
Indices: 74550976--74551182 Score: 182
Period size: 53 Copynumber: 3.8 Consensus size: 53
74550966 ATTAGGGTTT
* * * *
74550976 AAGGACACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGACACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
74551030 AAGGAAATCATGTAAGAACATGTCAAGACATGGCACTGATAAACTACGATAAGGC
1 AAGGACACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
** * * * *
74551085 AAAAATC-CCATATAAGACCATGCCAAGGCATTGCAATGGTGAGTTCATAAGGC
1 AAGGA-CACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
74551138 AAGGACACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGACACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
74551183 TAAAAAGGAA
Statistics
Matches: 115, Mismatches: 34, Indels: 9
0.73 0.22 0.06
Matches are distributed among these distances:
52 1 0.01
53 41 0.36
54 37 0.32
55 36 0.31
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (53 bp):
AAGGACACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:74565768 original size:39 final size:39
Alignment explanation
Indices: 74565719--74565796 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
74565709 ATAATAATAG
74565719 CTTTCAATCGAGTATCAAAATGGCACCTTATGAGGCTTT
1 CTTTCAATCGAGTATCAAAATGGCACCTTATGAGGCTTT
*
74565758 CTTTCAATCGAGTATCAAAATGTCACCTTATGAGGCTTT
1 CTTTCAATCGAGTATCAAAATGGCACCTTATGAGGCTTT
74565797 GTATGGTCGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.35
Consensus pattern (39 bp):
CTTTCAATCGAGTATCAAAATGGCACCTTATGAGGCTTT
Found at i:74566416 original size:14 final size:15
Alignment explanation
Indices: 74566397--74566426 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
74566387 GTTTATTATA
74566397 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
74566411 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
74566426 T
1 T
74566427 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:74568638 original size:19 final size:19
Alignment explanation
Indices: 74568611--74568652 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
74568601 ACAAATTAAG
*
74568611 TTTAATTCCATTT-AAAATA
1 TTTAATTCC-TTTGAAAACA
*
74568630 TTTATTTCCTTTGAAAACA
1 TTTAATTCCTTTGAAAACA
74568649 TTTA
1 TTTA
74568653 CGTTGCGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (19 bp):
TTTAATTCCTTTGAAAACA
Found at i:74569129 original size:28 final size:27
Alignment explanation
Indices: 74569026--74569129 Score: 84
Period size: 28 Copynumber: 3.6 Consensus size: 27
74569016 ATTTAGTGTT
* *
74569026 ATCTGGGCCTTAGCCCATATCAATATTA
1 ATCTGGGCC-TAGCCCATATCAGTATCA
*
74569054 ATCTGGGCCATAGCCCCT-TACAGTATCAGA
1 ATCTGGGCC-TAGCCCATAT-CAGTATC--A
*
74569084 GTATACTTGGCCTAGCCCATATCAGTATCA
1 --AT-CTGGGCCTAGCCCATATCAGTATCA
74569114 ATCTGGGCCGTAGCCC
1 ATCTGGGCC-TAGCCC
74569130 TATACAAGTC
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
27 7 0.11
28 29 0.48
30 2 0.03
32 16 0.26
33 7 0.11
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (27 bp):
ATCTGGGCCTAGCCCATATCAGTATCA
Found at i:74570675 original size:24 final size:23
Alignment explanation
Indices: 74570643--74570751 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
74570633 ACCAAACGTT
* **
74570643 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
74570667 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
74570691 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
74570715 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
74570739 GCACACATAGTGC
1 GCACACATAGTGC
74570752 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:74570717 original size:48 final size:48
Alignment explanation
Indices: 74570643--74570751 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
74570633 ACCAAACGTT
* **
74570643 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
74570691 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
74570739 GCACACATAGTGC
1 GCACACATAGTGC
74570752 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:74573452 original size:15 final size:15
Alignment explanation
Indices: 74573432--74573461 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74573422 TTAGTATAAT
74573432 GAAAAAGAGAAAATA
1 GAAAAAGAGAAAATA
*
74573447 GAAAAATAGAAAATA
1 GAAAAAGAGAAAATA
74573462 AGATATGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (15 bp):
GAAAAAGAGAAAATA
Found at i:74578578 original size:40 final size:39
Alignment explanation
Indices: 74578521--74578705 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
74578511 ATTAAATGAT
* * *
74578521 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
74578561 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
74578601 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
74578641 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
74578681 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
74578706 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:74578657 original size:80 final size:80
Alignment explanation
Indices: 74578520--74578726 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
74578510 AATTAAATGA
* * ** * *
74578520 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
74578585 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
74578598 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
74578663 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
74578680 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
74578727 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:74578711 original size:40 final size:39
Alignment explanation
Indices: 74578519--74578726 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
74578509 CAATTAAATG
* * ** *
74578519 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
74578559 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
74578599 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
74578639 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
74578679 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
74578719 ATATCCGG
1 ATATCCGG
74578727 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:74586577 original size:40 final size:39
Alignment explanation
Indices: 74586520--74586704 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
74586510 ATTAAATGAT
* * *
74586520 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
74586560 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
74586600 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
74586640 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
74586680 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
74586705 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:74586656 original size:80 final size:80
Alignment explanation
Indices: 74586519--74586725 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
74586509 AATTAAATGA
* * ** * *
74586519 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
74586584 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
74586597 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
74586662 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
74586679 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
74586726 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:74586710 original size:40 final size:39
Alignment explanation
Indices: 74586518--74586725 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
74586508 CAATTAAATG
* * ** *
74586518 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
74586558 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
74586598 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
74586638 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
74586678 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
74586718 ATATCCGG
1 ATATCCGG
74586726 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:74588898 original size:37 final size:37
Alignment explanation
Indices: 74588848--74588936 Score: 178
Period size: 37 Copynumber: 2.4 Consensus size: 37
74588838 CCATTCCAAT
74588848 CCAACCAACACACCATGTGGGGATTAAATCGACCCAC
1 CCAACCAACACACCATGTGGGGATTAAATCGACCCAC
74588885 CCAACCAACACACCATGTGGGGATTAAATCGACCCAC
1 CCAACCAACACACCATGTGGGGATTAAATCGACCCAC
74588922 CCAACCAACACACCA
1 CCAACCAACACACCA
74588937 ATATTGCAGC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.37, C:0.38, G:0.13, T:0.11
Consensus pattern (37 bp):
CCAACCAACACACCATGTGGGGATTAAATCGACCCAC
Found at i:74589234 original size:27 final size:27
Alignment explanation
Indices: 74589204--74589374 Score: 93
Period size: 27 Copynumber: 6.4 Consensus size: 27
74589194 GGGCATAATC
*
74589204 GTCATATTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* * ***
74589231 GTCATTTTGCTC-TATAAGGGTATTTTA
1 GTCATTTTAC-CATACAAGGGTATTACG
* * *
74589258 GTAATTTTA-CACTATAAGGGTATTTCG
1 GTCATTTTACCA-TACAAGGGTATTACG
74589285 GTCATTTTACCCAT--AAGGGTATTACG
1 GTCATTTTA-CCATACAAGGGTATTACG
* * * *
74589311 ATCATTTTA-CAGACCAAGGGTATTTCA
1 GTCATTTTACCATA-CAAGGGTATTACG
* * * *
74589338 GTAATTTT-GCAAATCAAGGGTATTTCG
1 GTCATTTTACCATA-CAAGGGTATTACG
*
74589365 GTAATTTTAC
1 GTCATTTTAC
74589375 AAATTGAGAG
Statistics
Matches: 112, Mismatches: 22, Indels: 19
0.73 0.14 0.12
Matches are distributed among these distances:
24 2 0.02
25 1 0.01
26 19 0.17
27 86 0.77
28 2 0.02
29 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:74589377 original size:27 final size:26
Alignment explanation
Indices: 74589244--74589378 Score: 126
Period size: 27 Copynumber: 5.1 Consensus size: 26
74589234 ATTTTGCTCT
** *
74589244 ATAAGGGTATTTTAGTAATTTTACACT
1 ATAAGGGTATTTCGGTAATTTTACA-A
* **
74589271 ATAAGGGTATTTCGGTCATTTTACCC
1 ATAAGGGTATTTCGGTAATTTTACAA
* * *
74589297 ATAAGGGTATTACGATCATTTTACAGA
1 ATAAGGGTATTTCGGTAATTTTACA-A
** * *
74589324 CCAAGGGTATTTCAGTAATTTTGCAA
1 ATAAGGGTATTTCGGTAATTTTACAA
74589350 ATCAAGGGTATTTCGGTAATTTTACAA
1 AT-AAGGGTATTTCGGTAATTTTACAA
74589377 AT
1 AT
74589379 TGAGAGTATT
Statistics
Matches: 86, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 23 0.27
27 63 0.73
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38
Consensus pattern (26 bp):
ATAAGGGTATTTCGGTAATTTTACAA
Found at i:74589387 original size:27 final size:27
Alignment explanation
Indices: 74589314--74589389 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
74589304 TATTACGATC
* * *
74589314 ATTTTACAGACCAAGGGTATTTCAGTA
1 ATTTTACAAATCAAGAGTATTTCAGTA
* * *
74589341 ATTTTGCAAATCAAGGGTATTTCGGTA
1 ATTTTACAAATCAAGAGTATTTCAGTA
**
74589368 ATTTTACAAATTGAGAGTATTT
1 ATTTTACAAATCAAGAGTATTT
74589390 ATGATGCATC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
ATTTTACAAATCAAGAGTATTTCAGTA
Found at i:74591966 original size:22 final size:23
Alignment explanation
Indices: 74591936--74591980 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
74591926 ACCTGATCAG
*
74591936 AATATGACACAT-AAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
74591958 AATACGACACATAAAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
74591981 TCAGTAAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (23 bp):
AATACGACACATAAAGTGCCTGA
Found at i:74592202 original size:21 final size:23
Alignment explanation
Indices: 74592151--74592229 Score: 106
Period size: 23 Copynumber: 3.4 Consensus size: 23
74592141 GATTCCATCC
* *
74592151 AAACACACCAAAAT-ATCCAACCA
1 AAACACACCAATATAATCC-TCCA
*
74592174 AAACACACCAATATAATCCTCTA
1 AAACACACCAATATAATCCTCCA
*
74592197 AAACACACCAGTATAATCCTCCA
1 AAACACACCAATATAATCCTCCA
74592220 AAACACACCA
1 AAACACACCA
74592230 GTATCATATA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
23 46 0.92
24 4 0.08
ACGTcount: A:0.51, C:0.34, G:0.01, T:0.14
Consensus pattern (23 bp):
AAACACACCAATATAATCCTCCA
Found at i:74592240 original size:28 final size:26
Alignment explanation
Indices: 74592171--74592285 Score: 118
Period size: 23 Copynumber: 4.5 Consensus size: 26
74592161 AAATATCCAA
74592171 CCAAAACACACC--A-ATATAATCCT
1 CCAAAACACACCAGATATATAATCCT
*
74592194 CTAAAACACACCAG---TATAATCCT
1 CCAAAACACACCAGATATATAATCCT
74592217 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG-AT-ATATAATCCT
74592245 CTC-AAACACACCAGAATAATATAATCCAT
1 C-CAAAACACACCAG-AT-ATATAATCC-T
74592274 CCAAAACACACC
1 CCAAAACACACC
74592286 TACCAAAGAG
Statistics
Matches: 78, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
23 33 0.42
28 33 0.42
29 12 0.15
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.18
Consensus pattern (26 bp):
CCAAAACACACCAGATATATAATCCT
Found at i:74595606 original size:40 final size:40
Alignment explanation
Indices: 74595561--74595690 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
74595551 CGGAATATAA
74595561 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74595601 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74595641 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
74595681 CCGGATATAA
1 CCGGATATAA
74595691 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74595705 original size:40 final size:40
Alignment explanation
Indices: 74595577--74595728 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
74595567 ATAAGCATGT
* * *
74595577 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
74595617 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
74595657 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
74595697 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
74595729 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:74595711 original size:80 final size:80
Alignment explanation
Indices: 74595577--74595728 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
74595567 ATAAGCATGT
* *
74595577 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
74595642 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
74595657 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
74595720 CCCGGATAT
64 CCCGGATAT
74595729 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:74603634 original size:40 final size:40
Alignment explanation
Indices: 74603589--74603716 Score: 124
Period size: 40 Copynumber: 3.2 Consensus size: 40
74603579 CGGAATATAA
74603589 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74603629 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
74603669 CCGGATAT-AGC-CGCTAGCACAATTGCCTTC-GGTCTTA-A
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
74603707 CCGGATATAA
1 CCGGATATAA
74603717 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
38 9 0.12
39 9 0.12
40 52 0.72
41 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Done.