Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 251 of 328
Found at i:74607105 original size:23 final size:23
Alignment explanation
Indices: 74607079--74607139 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 23
74607069 ATTAAATATC
*
74607079 CTACAGCCA-TTTAATTTGTCTAG
1 CTACAG-CATTTTAATGTGTCTAG
74607102 CTACAGCATTTTAATGTGTCTTAAG
1 CTACAGCATTTTAATGTGTC-T-AG
*
74607127 CTA-AACATTTTAA
1 CTACAGCATTTTAA
74607140 ATATAGGTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 2 0.06
23 16 0.48
24 10 0.30
25 5 0.15
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.39
Consensus pattern (23 bp):
CTACAGCATTTTAATGTGTCTAG
Found at i:74609594 original size:20 final size:19
Alignment explanation
Indices: 74609556--74609595 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
74609546 AAGGCCTGTG
*
74609556 AGAAAAAAAAAAGAGTGAA
1 AGAAAAAAAAAAAAGTGAA
*
74609575 AGAAAAAAAAAGAAATTGAA
1 AGAAAAAAAAA-AAAGTGAA
74609595 A
1 A
74609596 AAGAAAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.07
Consensus pattern (19 bp):
AGAAAAAAAAAAAAGTGAA
Found at i:74615238 original size:48 final size:48
Alignment explanation
Indices: 74615159--74615251 Score: 116
Period size: 48 Copynumber: 1.9 Consensus size: 48
74615149 TGATTAACGA
* * *
74615159 GATCCCGTGTATGACCATGTCTGGGACATGGCATCGGCATCGATATGC
1 GATCCCGTGTATGACCATATCAGGGACATGGCATCAGCATCGATATGC
* * *
74615207 GATCCTGTGTAAT-ACCATATCAGGGATATGGCTTCAGCATCGATA
1 GATCCCGTGT-ATGACCATATCAGGGACATGGCATCAGCATCGATA
74615252 AATGATTTCG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 36 0.95
49 2 0.05
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (48 bp):
GATCCCGTGTATGACCATATCAGGGACATGGCATCAGCATCGATATGC
Found at i:74615334 original size:90 final size:89
Alignment explanation
Indices: 74615194--74615418 Score: 238
Period size: 90 Copynumber: 2.5 Consensus size: 89
74615184 ACATGGCATC
* * * * * * *
74615194 GGCATCGATATGCGATCCTGTGTAATACCATATCAGGGATATGGCTTCAGCA-TCGA-TAAATGA
1 GGCATCGATATGAG-TCCCGTGTAAGACCATGTCTGGGACATGGCGTCAGCACT-GATTAAA-GA
* *
74615257 TTTCGTATAAGACCATATCTAGGACAT
63 CTTCGTATAAGACAATATCTAGGACAT
**
74615284 GGCATCGATATGAAGTCCCGTGTAAGACCATGTCTGGGACATGGCGTCAGCACTGATTTGAGACT
1 GGCATCGATATG-AGTCCCGTGTAAGACCATGTCTGGGACATGGCGTCAGCACTGATTAAAGACT
* *
74615349 TCGTATAAGACAATATCTGGGATAT
65 TCGTATAAGACAATATCTAGGACAT
* * * *
74615374 GGCATCGATGTGTGGTCCCATGTAAGACCATGTTTGGGACATGGC
1 GGCATCGATATG-AGTCCCGTGTAAGACCATGTCTGGGACATGGC
74615419 TTTGGCACCC
Statistics
Matches: 114, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
90 110 0.96
91 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (89 bp):
GGCATCGATATGAGTCCCGTGTAAGACCATGTCTGGGACATGGCGTCAGCACTGATTAAAGACTT
CGTATAAGACAATATCTAGGACAT
Found at i:74616748 original size:20 final size:20
Alignment explanation
Indices: 74616697--74616748 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
74616687 TGGACTGAGG
*
74616697 ACACAGGCATGTCACAAGCC
1 ACACAGGCGTGTCACAAGCC
* *
74616717 ACACGGGAGTGTCACAAGCC
1 ACACAGGCGTGTCACAAGCC
74616737 ACACAGGCGTGT
1 ACACAGGCGTGT
74616749 GTGACCACAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.12
Consensus pattern (20 bp):
ACACAGGCGTGTCACAAGCC
Found at i:74618997 original size:40 final size:40
Alignment explanation
Indices: 74618907--74619091 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
74618897 TTGAATGATG
* *
74618907 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
74618948 T-CGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
74618987 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
74619026 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74619065 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
74619092 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 37 0.30
40 76 0.62
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74619113 original size:79 final size:79
Alignment explanation
Indices: 74618960--74619124 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
74618950 GGACTAAGAT
* * **
74618960 CCGAAGGTATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACCAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACCAA
*
74619025 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74619039 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
74619102 TATATCC-GGTTAAATT
63 CAAATCCGGGTTAAATC
74619118 CCGAAGG
1 CCGAAGG
74619125 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACCAA
ATCCGGGTTAAATC
Found at i:74625758 original size:40 final size:39
Alignment explanation
Indices: 74625713--74625919 Score: 216
Period size: 40 Copynumber: 5.2 Consensus size: 39
74625703 CGGAATACAA
*
74625713 CGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGCC
* * *
74625753 CGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCC
1 CGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGCC
* * *
74625793 CGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGCC
* ** * *
74625833 CGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGCC
** * * *
74625873 CGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCC
1 CGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGCC
74625913 CGGATAT
1 CGGATAT
74625920 CATTCAATTG
Statistics
Matches: 141, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGCC
Found at i:74625852 original size:80 final size:81
Alignment explanation
Indices: 74625713--74625917 Score: 245
Period size: 80 Copynumber: 2.6 Consensus size: 81
74625703 CGGAATACAA
* * *
74625713 CGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAATG
1 CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATG
*
74625777 CCTTCGGGTATTAGCC
66 CCTTCGGGTATTAACC
* * *
74625793 CGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAATT
1 CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAAT
*
74625856 GCCTTCGGGTCTTAACC
65 GCCTTCGGGTATTAACC
** * ** * *
74625873 CGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
74625918 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 103 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATG
CCTTCGGGTATTAACC
Found at i:74628847 original size:13 final size:13
Alignment explanation
Indices: 74628829--74628853 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74628819 TAATGGTATA
74628829 TTGAATCCATGAT
1 TTGAATCCATGAT
74628842 TTGAATCCATGA
1 TTGAATCCATGA
74628854 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:74630421 original size:48 final size:48
Alignment explanation
Indices: 74630362--74630475 Score: 228
Period size: 48 Copynumber: 2.4 Consensus size: 48
74630352 AAAGTGTAAT
74630362 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
74630410 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
74630458 TATGTGGTAAAGCCGAAT
1 TATGTGGTAAAGCCGAAT
74630476 ACATGTGTGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:74630477 original size:34 final size:34
Alignment explanation
Indices: 74630439--74630509 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
74630429 GCTAATGTGA
74630439 AATACATGTGTGATATGTATATGTGGTAAAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
74630473 AATACATGTGTGATATGTATATGTGGTAAAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
74630507 AAT
1 AAT
74630510 GGCTAATGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (34 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:74630477 original size:82 final size:82
Alignment explanation
Indices: 74630391--74630652 Score: 364
Period size: 82 Copynumber: 3.0 Consensus size: 82
74630381 GCTAATGTGA
74630391 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
74630456 TATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCG
74630473 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG-TATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
74630537 TATATGTGGTAAAGCCGAATGGCTAATG
66 TATATGTGGTAAAG-C------C----G
* *
74630565 TGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGAT
1 ---AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGAT
*
74630630 ATGAATATGTGGTAAAGCCG
63 ATGTATATGTGGTAAAGCCG
74630650 AAT
1 AAT
74630653 GGCTAATGTG
Statistics
Matches: 162, Mismatches: 3, Indels: 30
0.83 0.02 0.15
Matches are distributed among these distances:
81 18 0.11
82 64 0.40
85 1 0.01
88 1 0.01
89 1 0.01
92 1 0.01
95 59 0.36
96 17 0.10
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.32
Consensus pattern (82 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCG
Found at i:74630525 original size:48 final size:48
Alignment explanation
Indices: 74630473--74630664 Score: 350
Period size: 48 Copynumber: 4.0 Consensus size: 48
74630463 GGTAAAGCCG
74630473 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
74630521 AATACATGTGTG-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
74630568 AATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
74630616 AATATATGTGTGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
74630664 A
1 A
74630665 TGTTGTAACA
Statistics
Matches: 139, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 47 0.34
48 92 0.66
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
Found at i:74630580 original size:129 final size:130
Alignment explanation
Indices: 74630362--74630604 Score: 470
Period size: 129 Copynumber: 1.9 Consensus size: 130
74630352 AAAGTGTAAT
74630362 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
*
74630427 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATACATGTGTGATATGTA
66 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATACATGTGTGATATGTA
74630492 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG-TATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
74630556 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAAT
66 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAAT
74630605 GGCTAATGTG
Statistics
Matches: 112, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
129 71 0.63
130 41 0.37
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (130 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATACATGTGTGATATGTA
Found at i:74630784 original size:36 final size:37
Alignment explanation
Indices: 74630709--74630793 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
74630699 GGAAATATAT
74630709 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
74630746 TCCGGGTAAGACCCGATGACTACGTGT-GAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
74630782 TCCGGGTAAGAC
1 TCCGGGTAAGAC
74630794 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 21 0.44
37 27 0.56
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:74632758 original size:40 final size:40
Alignment explanation
Indices: 74632712--74632972 Score: 255
Period size: 40 Copynumber: 6.5 Consensus size: 40
74632702 TGAATGATAC
**
74632712 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
74632752 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
74632792 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
74632832 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
74632871 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * **
74632911 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
74632951 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
74632973 ATCATGCTGG
Statistics
Matches: 195, Mismatches: 18, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
39 24 0.12
40 165 0.85
41 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:74635135 original size:13 final size:13
Alignment explanation
Indices: 74635117--74635141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74635107 TAATGGTATA
74635117 TTGAATCCATGAT
1 TTGAATCCATGAT
74635130 TTGAATCCATGA
1 TTGAATCCATGA
74635142 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:74636709 original size:48 final size:48
Alignment explanation
Indices: 74636650--74636941 Score: 319
Period size: 48 Copynumber: 6.4 Consensus size: 48
74636640 AAAGTGTAAT
74636650 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
74636698 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
74636746 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* ** * *
74636794 TATGTGGTAAAGCCGAAT-AC--ATGTGTGAT--ATGTAT-ATGTGGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATAT-GTA
* ** * * * * * *
74636837 -AAGCCG-AATGGCTAAT-G-TGAA-AT-ACAT--GTGT--GATATGTA
1 TATGTGGTAAAGCCGAATGGCT-AATGTGAAATACATGTGTGATATGTA
74636876 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
74636924 TATGTGGTAAAGCCGAAT
1 TATGTGGTAAAGCCGAAT
74636942 ACATGTGTGA
Statistics
Matches: 201, Mismatches: 28, Indels: 30
0.78 0.11 0.12
Matches are distributed among these distances:
39 3 0.01
40 6 0.03
41 19 0.09
42 10 0.05
43 11 0.05
44 3 0.01
45 7 0.03
46 3 0.01
47 1 0.00
48 138 0.69
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.32
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:74636826 original size:82 final size:83
Alignment explanation
Indices: 74636725--74637065 Score: 363
Period size: 82 Copynumber: 4.0 Consensus size: 83
74636715 TGGCTAATGT
*
74636725 GAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATA
1 GAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATA
74636790 TGTATATGTGGTAAAGCC
66 TGTATATGTGGTAAAGCC
74636808 G-AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATA
1 GAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATA
74636872 TGTATATGTGGTAAAGCCGAATGGC
66 TGTATATGTGGTAAAG-C------C
* * * ** *
74636897 TAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAAT-AC-ATGTGTGATATGTATA
1 ----G--AAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA-ATGTGAAATACATG
* * * * * *
74636960 TGTGGTAAAGCCGA-ATG-GCTAATG-T
59 TGTGAT-ATG--TATATGTGGTAAAGCC
74636985 GAAATACATGTGTG-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATA
1 GAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATA
74637049 TGTATATGTGGTAAAGC
66 TGTATATGTGGTAAAGC
74637066 AGAATGGCTA
Statistics
Matches: 211, Mismatches: 24, Indels: 47
0.75 0.09 0.17
Matches are distributed among these distances:
79 1 0.00
80 3 0.01
81 31 0.15
82 106 0.50
83 3 0.01
84 1 0.00
89 1 0.00
93 1 0.00
94 1 0.00
95 15 0.07
96 44 0.21
97 3 0.01
98 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (83 bp):
GAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATA
TGTATATGTGGTAAAGCC
Found at i:74636991 original size:48 final size:48
Alignment explanation
Indices: 74636939--74637130 Score: 350
Period size: 48 Copynumber: 4.0 Consensus size: 48
74636929 GGTAAAGCCG
74636939 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
74636987 AATACATGTGTG-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
*
74637034 AATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
* *
74637082 AATATATGTGTGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGA
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
74637130 A
1 A
74637131 TGTTGTAACA
Statistics
Matches: 139, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 47 0.34
48 92 0.66
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
Found at i:74637081 original size:130 final size:130
Alignment explanation
Indices: 74636679--74637070 Score: 759
Period size: 130 Copynumber: 3.0 Consensus size: 130
74636669 GCTAATGTGA
*
74636679 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
74636744 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
74636809 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
74636874 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
74636939 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG-TATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
74637003 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
74637068 AAT
1 AAT
74637071 GGCTAATGTG
Statistics
Matches: 260, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
129 71 0.27
130 189 0.73
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (130 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:74637225 original size:37 final size:37
Alignment explanation
Indices: 74637175--74637260 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
74637165 GGAAATATAT
*
74637175 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
74637212 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
74637249 TCCGGGTAAGAC
1 TCCGGGTAAGAC
74637261 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
Found at i:74644458 original size:20 final size:20
Alignment explanation
Indices: 74644433--74644480 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
74644423 ATGAAGTGTC
74644433 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
74644453 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
74644473 ACACGCCC
1 ACACGCCC
74644481 ATGCCTTCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.35, G:0.35, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:74656485 original size:47 final size:47
Alignment explanation
Indices: 74656416--74656641 Score: 171
Period size: 47 Copynumber: 4.7 Consensus size: 47
74656406 GGTAGAATGC
* *
74656416 CGATGCCATGTCTCAGACATGGTCTTACACTAGCTCATC-CATCAAGT-
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCGCAT-AAGTG
* * *
74656463 CGATGCCATGTCCCAAACATGGTCTTACACT-GACTATCGAAATTGAG-G
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCG-CA-TAAGTG
** * * *
74656511 CCGACACCATGTCCTAGACATGGTCTTACACTAGCTCTCGCATATCCGTG
1 -CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCATA--AGTG
* * *
74656561 CCAATGTCATGTCCCAAACATGGTCTTACACTGGCTCT--CATAATGTGG
1 -CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCATAA-GT-G
74656609 CTGATG-CATGTCCCAAACAT-GTCTTACACTAGC
1 C-GATGCCATGTCCCAAACATGGTCTTACACTAGC
74656642 ACATAAATAA
Statistics
Matches: 143, Mismatches: 23, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
46 15 0.10
47 49 0.34
48 12 0.08
49 34 0.24
50 33 0.23
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCATAAGTG
Found at i:74663185 original size:28 final size:27
Alignment explanation
Indices: 74663122--74663191 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
74663112 ATAGTGAGTC
*
74663122 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74663149 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74663177 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74663192 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74669880 original size:28 final size:27
Alignment explanation
Indices: 74669817--74669886 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
74669807 ATAGTGAGTC
*
74669817 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74669844 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74669872 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74669887 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74673872 original size:44 final size:40
Alignment explanation
Indices: 74673824--74673915 Score: 130
Period size: 44 Copynumber: 2.2 Consensus size: 40
74673814 TGTTTAGCTG
74673824 AAGCTATAACGATATCGCACACTTAGTGCCATCACATTAAACCA
1 AAGCTATAACGATATCGCACACTTAGTG-C--CACA-TAAACCA
**
74673868 AAGCTATCTCGATATCGCACACTTAGTGCCACATAAACCA
1 AAGCTATAACGATATCGCACACTTAGTGCCACATAAACCA
74673908 AAGCTATA
1 AAGCTATA
74673916 TCAATTCGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
40 14 0.31
41 4 0.09
43 1 0.02
44 26 0.58
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (40 bp):
AAGCTATAACGATATCGCACACTTAGTGCCACATAAACCA
Found at i:74677309 original size:43 final size:42
Alignment explanation
Indices: 74677219--74677329 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
74677209 ACTGAGATTA
* *
74677219 CGTGTAAGACCATATATGGGATATGGAATCGATATGAGACTT
1 CGTGTAAGACCATATATGGGATATGGAATCGATACGAGACAT
* * *
74677261 CGTGTAAGACCATAGT-TTGGCTATTGGCATCGATACGAGATCAT
1 CGTGTAAGACCATA-TATGGGATA-TGGAATCGATACGAGA-CAT
*
74677305 -GTGTAAGACCATATCTGGGATATGG
1 CGTGTAAGACCATATATGGGATATGG
74677330 CATTGGTACA
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
42 23 0.40
43 33 0.57
44 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATATGGGATATGGAATCGATACGAGACAT
Found at i:74679957 original size:56 final size:56
Alignment explanation
Indices: 74679718--74679951 Score: 405
Period size: 56 Copynumber: 4.2 Consensus size: 56
74679708 TTGTGATCAT
* *
74679718 GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATACGTGTGC
1 GAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGC
*
74679774 GAGTAAGACCACGTTTAGTATGTTGGCATCGATATGTGATTCTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGC
* * *
74679830 GAGTAAGACCACATTTAAAATGTTGGCATTGATATGTGATTCTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGC
*
74679886 GAGTAAGACCATGTTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGC
1 GAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGC
74679942 GAGTAAGACC
1 GAGTAAGACC
74679952 CTGTTTGGGA
Statistics
Matches: 167, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 167 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (56 bp):
GAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGC
Found at i:74680655 original size:31 final size:32
Alignment explanation
Indices: 74680611--74680670 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
74680601 ATGCGAAGAT
* *
74680611 GGCTTGTTTATTTTG-TTAAGTTCGGTTACAA
1 GGCTTGGTCATTTTGCTTAAGTTCGGTTACAA
*
74680642 GGCTTGGTCATTTTGCTTATGTTCGGTTA
1 GGCTTGGTCATTTTGCTTAAGTTCGGTTA
74680671 TATTTGACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 13 0.52
32 12 0.48
ACGTcount: A:0.15, C:0.12, G:0.25, T:0.48
Consensus pattern (32 bp):
GGCTTGGTCATTTTGCTTAAGTTCGGTTACAA
Found at i:74685429 original size:24 final size:24
Alignment explanation
Indices: 74685402--74685608 Score: 333
Period size: 24 Copynumber: 8.6 Consensus size: 24
74685392 CTTATTATGT
* * *
74685402 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
74685426 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
74685450 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
74685474 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
74685498 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
74685522 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
74685546 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
74685570 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
74685594 TCGCACACATAGTGC
1 TCGCACACATAGTGC
74685609 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:74693162 original size:24 final size:24
Alignment explanation
Indices: 74693135--74693341 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
74693125 CTTATTATGT
* * *
74693135 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
74693159 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
74693183 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
74693207 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
74693231 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
74693255 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
74693279 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
74693303 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
74693327 TCGCACACATAGTGC
1 TCGCACACATAGTGC
74693342 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:74696980 original size:39 final size:39
Alignment explanation
Indices: 74696933--74697233 Score: 419
Period size: 39 Copynumber: 7.7 Consensus size: 39
74696923 TTCCAACACA
74696933 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
74696972 AATACCTTCGGGACTTAGCCCAGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
74697011 AATACCTTCGGGACTTAGCTCGGATATAACACCAGAACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
74697050 AATGCCTTCAGGAATTAGCCCGGATATAACACCACCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
74697089 AATGCCTTCGGGACTTAGCCCGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
74697128 AATGCCTTCAGGACTTAGCCCGCATATAACACCGGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
74697167 AATGCCTTCGGGACTTAGCCCGGATATAA-ATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATATAACA-C-CAGCACG
* * * *
74697205 AAGGCCTGCGGGTCTTAGCCCGGTTATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
74697234 TCCTCAATTA
Statistics
Matches: 234, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
38 26 0.11
39 207 0.88
40 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:74700784 original size:40 final size:40
Alignment explanation
Indices: 74700739--74700905 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
74700729 CGGAATATAA
74700739 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74700779 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74700819 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74700859 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74700898 CCGGATAT
1 CCGGATAT
74700906 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74700889 original size:80 final size:79
Alignment explanation
Indices: 74700755--74700905 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
74700745 ATAATCACGT
*
74700755 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
74700820 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
74700835 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
74700898 CCGGATAT
64 CCGGATAT
74700906 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:74708867 original size:40 final size:39
Alignment explanation
Indices: 74708756--74708906 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
74708746 TTAATCACGT
* * *
74708756 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
74708796 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
74708836 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
74708876 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
74708907 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:74708890 original size:80 final size:79
Alignment explanation
Indices: 74708756--74708906 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
74708746 TTAATCACGT
*
74708756 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
74708821 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
74708836 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
74708899 CCGGATAT
64 CCGGATAT
74708907 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:74711527 original size:50 final size:51
Alignment explanation
Indices: 74711473--74711601 Score: 179
Period size: 50 Copynumber: 2.5 Consensus size: 51
74711463 ATCTAGTATG
* *
74711473 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGCTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCAGCTACA
* ** * *
74711523 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCAGCTACA
*
74711574 CATAGTAGCCTGCACTTAGTACCACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
74711602 TGCGACCTCA
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 36 0.51
51 34 0.49
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCCATCAGCTACA
Found at i:74715910 original size:56 final size:56
Alignment explanation
Indices: 74715850--74716062 Score: 293
Period size: 56 Copynumber: 3.8 Consensus size: 56
74715840 TCCCAGATAG
* *
74715850 GGTCTTACTCATAAACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
* * * *
74715906 GGTCTTACTCGCACACACATATAGGAATCACATATCGATGCCAATGTATTAAATGT
1 GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
* * *
74715962 GGTCTTACTCACACACACATATC-AGAATCACATATTGATGCCAACATATTAAACGT
1 GGTCTTACTCACACACACATATCGA-AATCACATATCGATGCCAACGTATTAAATGT
** * *
74716018 GGTCTTACTCGTACACACATATCGGAATCACATATCAATGCCAAC
1 GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAAC
74716063 TAAAAAATGT
Statistics
Matches: 137, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
56 137 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
Found at i:74716020 original size:112 final size:112
Alignment explanation
Indices: 74715850--74716061 Score: 336
Period size: 112 Copynumber: 1.9 Consensus size: 112
74715840 TCCCAGATAG
* * *
74715850 GGTCTTACTCATAAACACATATCGAAATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT
1 GGTCTTACTCACAAACACATATCGAAATCACATATCGATGCCAACATATTAAACGTGGTCTTACT
*
74715915 CGCACACACATATAGGAATCACATATCGATGCCAATGTATTAAATGT
66 CGCACACACATATAGGAATCACATATCAATGCCAATGTATTAAATGT
* *
74715962 GGTCTTACTCACACACACATATC-AGAATCACATATTGATGCCAACATATTAAACGTGGTCTTAC
1 GGTCTTACTCACAAACACATATCGA-AATCACATATCGATGCCAACATATTAAACGTGGTCTTAC
* *
74716026 TCGTACACACATATCGGAATCACATATCAATGCCAA
65 TCGCACACACATATAGGAATCACATATCAATGCCAA
74716062 CTAAAAAATG
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
111 1 0.01
112 90 0.99
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (112 bp):
GGTCTTACTCACAAACACATATCGAAATCACATATCGATGCCAACATATTAAACGTGGTCTTACT
CGCACACACATATAGGAATCACATATCAATGCCAATGTATTAAATGT
Found at i:74719660 original size:40 final size:40
Alignment explanation
Indices: 74719616--74719798 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
74719606 GCTACTCATT
*
74719616 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
74719656 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
74719696 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
74719735 CAAATGCCTTC-GAATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
74719776 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
74719799 ACATCATTCG
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 1 0.01
39 31 0.25
40 77 0.63
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74719717 original size:79 final size:80
Alignment explanation
Indices: 74719618--74719798 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
74719608 TACTCATTCA
* * *
74719618 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GAATCTTAACCCGG
* *
74719681 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
74719698 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAATCTTAACCCGGAT
*
74719762 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
74719777 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
74719799 ACATCATTCG
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.02
79 60 0.68
80 26 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:74727784 original size:40 final size:40
Alignment explanation
Indices: 74727713--74727896 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74727703 GCTACTCATT
*
74727713 CAAATGCCTT-GGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
74727752 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
74727792 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74727831 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
74727872 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74727897 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 42 0.34
40 67 0.54
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74727812 original size:79 final size:80
Alignment explanation
Indices: 74727715--74727896 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
74727705 TACTCATTCA
* * *
74727715 AATGCCTT-GGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCAG
* *
74727777 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* **
74727794 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCACAAATGCCTTCGGATCTTAGTCCAGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGAT
*
74727858 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
74727873 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
74727897 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 66 0.75
80 19 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGAT
ATAGTAACTTAGCAC
Found at i:74734025 original size:43 final size:43
Alignment explanation
Indices: 74733959--74734074 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
74733949 AAAACTCGTG
* * * *
74733959 CAATGCC-ATATCCCGGATATGGTCTTACATGTTATCAC-ATA
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATA
* * * *
74734000 TCGATGCCACTGTCCCAGACATGGTCTTACACGTAATCTCAATA
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATA
* *
74734044 CAATGCCAATTTCCTAGACATGGTCTTACAT
1 CAATGCCAATGTCCCAGACATGGTCTTACAT
74734075 TATTGAGATG
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 6 0.10
43 50 0.85
44 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATA
Found at i:74745189 original size:20 final size:20
Alignment explanation
Indices: 74745164--74745210 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
74745154 TGAAGGGCAT
74745164 GGGCGTGCCCCAAGATACAC
1 GGGCGTGCCCCAAGATACAC
74745184 GGGCGTGCCCCAAGATACAC
1 GGGCGTGCCCCAAGATACAC
74745204 GGGCGTG
1 GGGCGTG
74745211 TGAGTCCACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.32, G:0.36, T:0.11
Consensus pattern (20 bp):
GGGCGTGCCCCAAGATACAC
Found at i:74747840 original size:29 final size:29
Alignment explanation
Indices: 74747807--74747937 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
74747797 TGACGAGATC
*
74747807 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
74747836 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
74747865 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
74747894 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
74747923 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
74747938 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:74755802 original size:29 final size:29
Alignment explanation
Indices: 74755769--74755899 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
74755759 TGACGAGATC
*
74755769 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
74755798 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
74755827 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
74755856 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
74755885 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
74755900 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:74759814 original size:31 final size:31
Alignment explanation
Indices: 74759776--74759839 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
74759766 CCTTTTCATA
74759776 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
74759807 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
74759838 TT
1 TT
74759840 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:74760081 original size:24 final size:24
Alignment explanation
Indices: 74760044--74760171 Score: 215
Period size: 24 Copynumber: 5.4 Consensus size: 24
74760034 CTGGAGGCCT
*
74760044 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
74760069 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74760093 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
74760116 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74760140 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74760163 AGCCCTTTT
1 AGCCCTTTT
74760172 TCACTTCCTC
Statistics
Matches: 98, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
23 45 0.46
24 49 0.50
25 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:74760105 original size:23 final size:23
Alignment explanation
Indices: 74760051--74760170 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
74760041 CCTAGCCTCT
*
74760051 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74760074 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
74760098 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
74760121 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
74760145 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74760168 TTT
1 TTT
74760171 TTCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74760105 original size:47 final size:47
Alignment explanation
Indices: 74760051--74760171 Score: 224
Period size: 47 Copynumber: 2.6 Consensus size: 47
74760041 CCTAGCCTCT
*
74760051 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
74760098 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
74760145 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
74760172 TCACTTCCTC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:74760245 original size:20 final size:20
Alignment explanation
Indices: 74760220--74760286 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74760210 TTATGATTAC
74760220 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74760240 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74760260 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74760280 ACCATGT
1 ATCATGT
74760287 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74760251 original size:11 final size:11
Alignment explanation
Indices: 74760220--74760275 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74760210 TTATGATTAC
74760220 ATCATGTGCAT
1 ATCATGTGCAT
*
74760231 ATCA--TACAT
1 ATCATGTGCAT
74760240 ATCATGTGCAT
1 ATCATGTGCAT
*
74760251 ATCA--TACAT
1 ATCATGTGCAT
*
74760260 GTCATGTGCAT
1 ATCATGTGCAT
74760271 ATCAT
1 ATCAT
74760276 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74760355 original size:25 final size:25
Alignment explanation
Indices: 74760323--74760370 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74760313 ATACATAAAC
* * *
74760323 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74760348 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74760371 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74766528 original size:31 final size:31
Alignment explanation
Indices: 74766490--74766553 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
74766480 CCTTTTCATA
74766490 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
74766521 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
74766552 TT
1 TT
74766554 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:74766793 original size:24 final size:24
Alignment explanation
Indices: 74766742--74766907 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
74766732 GCTTTATCAT
*
74766742 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
74766767 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
74766791 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
74766814 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
74766838 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
74766862 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
74766885 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74766908 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 45 0.34
24 76 0.57
25 12 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:74766842 original size:71 final size:71
Alignment explanation
Indices: 74766742--74766907 Score: 271
Period size: 71 Copynumber: 2.3 Consensus size: 71
74766732 GCTTTATCAT
*
74766742 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
74766806 GCCCTTTA
64 GCCCTTTA
* * *
74766814 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
74766879 CCTTTA
66 CCTTTA
74766885 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74766908 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
71 77 0.87
72 12 0.13
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTA
Found at i:74766907 original size:47 final size:48
Alignment explanation
Indices: 74766742--74766907 Score: 257
Period size: 47 Copynumber: 3.5 Consensus size: 48
74766732 GCTTTATCAT
* *
74766742 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
74766791 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
74766838 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
74766885 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74766908 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
47 71 0.65
48 27 0.25
49 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:74766980 original size:20 final size:20
Alignment explanation
Indices: 74766955--74767001 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
74766945 TTATGATTAC
74766955 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74766975 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74766995 ACCATGT
1 ATCATGT
74767002 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74767070 original size:25 final size:25
Alignment explanation
Indices: 74767038--74767085 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74767028 ATACATAAAC
* * *
74767038 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74767063 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74767086 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74771080 original size:15 final size:17
Alignment explanation
Indices: 74771049--74771081 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
74771039 CACCATAGCT
74771049 GAAACATAAACAAGAAA
1 GAAACATAAACAAGAAA
74771066 GAAA-ATAAA-AAGAAA
1 GAAACATAAACAAGAAA
74771081 G
1 G
74771082 CTAGGGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.73, C:0.06, G:0.15, T:0.06
Consensus pattern (17 bp):
GAAACATAAACAAGAAA
Found at i:74782064 original size:43 final size:43
Alignment explanation
Indices: 74782017--74782128 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 43
74782007 TCGATGTCAT
*
74782017 TGTTCCAGACAGGGTCTTACACG-AA-ATCAATTA-ATGATGCCAA
1 TGTTCCAGACATGGTCTTACACGTAATATCAA-TACA--ATGCCAA
*
74782060 TGTTCCAGACATGGTCTTACACGTAATCTCAATACAATGCCAA
1 TGTTCCAGACATGGTCTTACACGTAATATCAATACAATGCCAA
* *
74782103 TGTTCCAGACATGGTATTACATGTAA
1 TGTTCCAGACATGGTCTTACACGTAA
74782129 ACACATCTTG
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
43 53 0.85
44 4 0.06
45 5 0.08
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (43 bp):
TGTTCCAGACATGGTCTTACACGTAATATCAATACAATGCCAA
Found at i:74789392 original size:29 final size:29
Alignment explanation
Indices: 74789360--74789495 Score: 148
Period size: 29 Copynumber: 4.7 Consensus size: 29
74789350 ATACCCTCCG
** * *
74789360 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
74789389 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
74789418 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
74789447 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* *
74789476 AGCACGCACACTTGGTGCCA
1 AGCTCGCACACTTAGTGCCA
74789496 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:74789487 original size:58 final size:58
Alignment explanation
Indices: 74789306--74789494 Score: 168
Period size: 58 Copynumber: 3.3 Consensus size: 58
74789296 TACTCGATTT
* * * *** *
74789306 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
74789364 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
74789422 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
*
74789480 CGCACACTTGGTGCC
1 CGCACACTTAGTGCC
74789495 AATCTCGTCA
Statistics
Matches: 104, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 93 0.89
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:74790397 original size:143 final size:143
Alignment explanation
Indices: 74790139--74790436 Score: 587
Period size: 143 Copynumber: 2.1 Consensus size: 143
74790129 AAATTCTATA
74790139 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
74790204 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
74790269 AGGAAGACAACAT
131 AGGAAAACAACAT
74790282 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
74790347 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
74790412 AGGAAAACAACAT
131 AGGAAAACAACAT
74790425 GCATGGCCGAAT
1 GCATGGCCGAAT
74790437 TTTAACTCAC
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 154 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.21
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:74794860 original size:40 final size:40
Alignment explanation
Indices: 74794801--74794898 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
74794791 CGGATGACAA
* **
74794801 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAACGAG-TAGCTATAT
*
74794841 CCGGGCTAAGTCCCAAAGGCAGTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAACGAGTAGCTATAT
*
74794881 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74794899 TACTTGTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 16 0.31
40 35 0.69
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAGTTGAACGAGTAGCTATAT
Found at i:74797659 original size:41 final size:41
Alignment explanation
Indices: 74797614--74797731 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74797604 TGAAAGATAA
74797614 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74797655 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74797685 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74797726 ATGTAG
1 ATGTAG
74797732 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74797670 original size:71 final size:71
Alignment explanation
Indices: 74797582--74797745 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74797572 GAGATGTATC
74797582 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74797647 AGGACA
66 AGGACA
74797653 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74797718 AGGACA
66 AGGACA
74797724 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74797746 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74805235 original size:41 final size:41
Alignment explanation
Indices: 74805190--74805307 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74805180 TGAAAGATAA
74805190 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74805231 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74805261 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74805302 ATGTAG
1 ATGTAG
74805308 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74805246 original size:71 final size:71
Alignment explanation
Indices: 74805158--74805321 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74805148 GAGATGTATC
74805158 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74805223 AGGACA
66 AGGACA
74805229 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74805294 AGGACA
66 AGGACA
74805300 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74805322 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74813254 original size:40 final size:40
Alignment explanation
Indices: 74813195--74813292 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
74813185 CGGATGACAA
* **
74813195 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAACGAG-TAGCTATAT
*
74813235 CCGGGCTAAGTCCCAAAGGCAGTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAACGAGTAGCTATAT
*
74813275 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74813293 TACTTGTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 16 0.31
40 35 0.69
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAGTTGAACGAGTAGCTATAT
Found at i:74819047 original size:24 final size:23
Alignment explanation
Indices: 74819004--74819049 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
74818994 CTCACACCTC
*
74819004 AATCTCCCTTAATTCTCTCCTAA
1 AATCTCCCATAATTCTCTCCTAA
74819027 AATCTCTCCATAATATC-CTCCTA
1 AATCTC-CCATAAT-TCTCTCCTA
74819050 GAATTCGGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 12 0.60
25 2 0.10
ACGTcount: A:0.28, C:0.35, G:0.00, T:0.37
Consensus pattern (23 bp):
AATCTCCCATAATTCTCTCCTAA
Found at i:74820919 original size:40 final size:40
Alignment explanation
Indices: 74820874--74821040 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
74820864 CGGAATATAA
*
74820874 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74820914 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74820954 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
74820994 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
74821033 CCGGATAT
1 CCGGATAT
74821041 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74828923 original size:40 final size:40
Alignment explanation
Indices: 74828878--74829044 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
74828868 CGGAATATAA
74828878 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74828918 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74828958 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
74828998 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
74829037 CCGGATAT
1 CCGGATAT
74829045 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74833092 original size:26 final size:27
Alignment explanation
Indices: 74833037--74833100 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
74833027 ATTTACTAGA
*
74833037 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTA-GTATGCAAAATGACCATT
*
74833065 ATACCCCTA-TATGCAAAATGACCTTT
1 ATACCCCTAGTATGCAAAATGACCATT
74833091 ATACCCCTAG
1 ATACCCCTAG
74833101 GGTTAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 24 0.73
28 9 0.27
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (27 bp):
ATACCCCTAGTATGCAAAATGACCATT
Found at i:74833242 original size:28 final size:28
Alignment explanation
Indices: 74833201--74833290 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 28
74833191 AGGAAGCGTC
74833201 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
74833229 CTGGTGGCCCTGCCAC--GTGTATCTGTT
1 CTGGTGGCACTGCCACAAAT-TATCTGTT
* *
74833256 CTGGTGGCACTGCCACAAAATATATGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
74833285 CTGGTG
1 CTGGTG
74833291 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.02
27 23 0.45
28 20 0.39
29 7 0.14
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:74833309 original size:55 final size:56
Alignment explanation
Indices: 74833201--74833315 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
74833191 AGGAAGCGTC
* * * *
74833201 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTGTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATATGTTCTGGTGACCCTGCCACATGTATCTGTAT
* * *
74833256 CTGGTGGC-ACTGCCACAAAATATATGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATATGT-TCTGGTGACCCTGCCACATGTATCTGTAT
74833312 CTGG
1 CTGG
74833316 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATATGTTCTGGTGACCCTGCCACATGTATCTGTAT
Found at i:74839849 original size:27 final size:28
Alignment explanation
Indices: 74839793--74839856 Score: 103
Period size: 27 Copynumber: 2.3 Consensus size: 28
74839783 ATTTACTAGA
*
74839793 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
74839821 ATACCCCTATGT-TGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
74839848 ATACCCCTA
1 ATACCCCTA
74839857 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 22 0.65
28 12 0.35
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:74840018 original size:27 final size:28
Alignment explanation
Indices: 74839960--74840049 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
74839950 AGGAAGCGTC
*
74839960 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
74839988 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
74840015 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
74840044 CTGGTG
1 CTGGTG
74840050 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:74840060 original size:29 final size:28
Alignment explanation
Indices: 74839970--74840060 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
74839960 CTGGTGGCTA
* * *
74839970 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
74839998 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
74840025 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
74840054 TGTCACA
1 TGCCACA
74840061 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:74840068 original size:55 final size:56
Alignment explanation
Indices: 74839960--74840074 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
74839950 AGGAAGCGTC
* * *
74839960 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
74840015 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
74840071 CTGG
1 CTGG
74840075 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:74841131 original size:11 final size:10
Alignment explanation
Indices: 74841103--74841136 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
74841093 AGCCTGTAAG
74841103 TATTCTGAAT
1 TATTCTGAAT
*
74841113 TTTTCTGAAT
1 TATTCTGAAT
74841123 ATATTCTGAAT
1 -TATTCTGAAT
74841134 TAT
1 TAT
74841137 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:74846591 original size:28 final size:28
Alignment explanation
Indices: 74846559--74846623 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
74846549 ATTTACTAGA
*
74846559 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
74846587 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
74846615 ATACCCCTA
1 ATACCCCTA
74846624 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:74846785 original size:27 final size:28
Alignment explanation
Indices: 74846727--74846816 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
74846717 AGGAAGCGTC
*
74846727 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
74846755 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
74846782 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
74846811 CTGGTG
1 CTGGTG
74846817 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:74846827 original size:29 final size:28
Alignment explanation
Indices: 74846737--74846827 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
74846727 CTGGTGGCTA
* * *
74846737 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
74846765 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
74846792 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
74846821 TGTCACA
1 TGCCACA
74846828 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:74846835 original size:55 final size:56
Alignment explanation
Indices: 74846727--74846841 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
74846717 AGGAAGCGTC
* * *
74846727 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
74846782 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
74846838 CTGG
1 CTGG
74846842 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:74847301 original size:19 final size:19
Alignment explanation
Indices: 74847277--74847315 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74847267 TTTTAATTAT
* *
74847277 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
74847296 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
74847315 T
1 T
74847316 ATGATGACTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:74847909 original size:11 final size:10
Alignment explanation
Indices: 74847881--74847914 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
74847871 AGCCTGTAAG
74847881 TATTCTGAAT
1 TATTCTGAAT
*
74847891 TTTTCTGAAT
1 TATTCTGAAT
74847901 ATATTCTGAAT
1 -TATTCTGAAT
74847912 TAT
1 TAT
74847915 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:74854391 original size:28 final size:28
Alignment explanation
Indices: 74854359--74854423 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
74854349 ATTTACTAGA
*
74854359 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
74854387 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
74854415 ATACCCCTA
1 ATACCCCTA
74854424 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:74854588 original size:27 final size:28
Alignment explanation
Indices: 74854530--74854619 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
74854520 AGGAAGCGTC
*
74854530 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
74854558 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
74854585 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
74854614 CTGGTG
1 CTGGTG
74854620 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:74854630 original size:29 final size:28
Alignment explanation
Indices: 74854540--74854630 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
74854530 CTGGTGGCTA
* * *
74854540 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
74854568 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
74854595 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
74854624 TGTCACA
1 TGCCACA
74854631 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:74854638 original size:55 final size:56
Alignment explanation
Indices: 74854530--74854644 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
74854520 AGGAAGCGTC
* * *
74854530 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
74854585 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
74854641 CTGG
1 CTGG
74854645 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:74855106 original size:19 final size:19
Alignment explanation
Indices: 74855082--74855120 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74855072 TTTTAATTAT
* *
74855082 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
74855101 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
74855120 T
1 T
74855121 GATGAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:74857718 original size:33 final size:34
Alignment explanation
Indices: 74857651--74857718 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
74857641 CTAAGCCCAG
**
74857651 ATCAGTAACAATCTAGGCCTGAGCCCTATTCAGT
1 ATCAGTAACAATCTAGGCCTGAGCCCTACACAGT
* * *
74857685 ATCAGT-ACAGTCTGGGCCTTAGCCCTACACAGT
1 ATCAGTAACAATCTAGGCCTGAGCCCTACACAGT
74857718 A
1 A
74857719 ATAGTGTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 23 0.79
34 6 0.21
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (34 bp):
ATCAGTAACAATCTAGGCCTGAGCCCTACACAGT
Found at i:74857938 original size:27 final size:27
Alignment explanation
Indices: 74857900--74857965 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
74857890 CAGCATAGCT
* *
74857900 ACCAGAAACAGTAAATTTGGCAAAGCC
1 ACCAGTAACAGTAAATGTGGCAAAGCC
* * * *
74857927 ACCAGTAACAGTGAATGTGTCATAGTC
1 ACCAGTAACAGTAAATGTGGCAAAGCC
74857954 ACCAGT-ACAGTA
1 ACCAGTAACAGTA
74857966 CTTCCTCCAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (27 bp):
ACCAGTAACAGTAAATGTGGCAAAGCC
Found at i:74858131 original size:27 final size:26
Alignment explanation
Indices: 74858101--74858222 Score: 91
Period size: 27 Copynumber: 4.5 Consensus size: 26
74858091 GGGCATAATT
*
74858101 GTCATTTTACCATATAGGGATATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* * *
74858128 GTCATTTTATCCTACAAGGGCATTACG
1 GTCATTTTA-CCTATAGGGGTATTACG
* * * **
74858155 GTTATTTTACCCTAGAGGGGTACTATA
1 GTCATTTTA-CCTATAGGGGTATTACG
* **
74858182 GTTATTTTACCTTATAGGGGTATTATA
1 GTCATTTTACC-TATAGGGGTATTACG
*
74858209 GTCATTGTACCTAT
1 GTCATTTTACCTAT
74858223 TTTAGGGTTT
Statistics
Matches: 77, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
26 5 0.06
27 70 0.91
28 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:74861251 original size:13 final size:13
Alignment explanation
Indices: 74861233--74861258 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74861223 ATGTAATGGT
74861233 AACAAATTAATTC
1 AACAAATTAATTC
74861246 AACAAATTAATTC
1 AACAAATTAATTC
74861259 CCTTTTAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
AACAAATTAATTC
Found at i:74861624 original size:31 final size:31
Alignment explanation
Indices: 74861567--74861645 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
74861557 AATATAAATG
* *
74861567 AGCTCAATTAAGCTA-AGTT-GAGTTGAATTA
1 AGCTCAA-TAAGCTAGAATTCGAGTTGAATCA
* *
74861597 AGCTCAATGAGCTAGAATTCGAGTTGAATCG
1 AGCTCAATAAGCTAGAATTCGAGTTGAATCA
74861628 AGCTCAATAAGCTAGAAT
1 AGCTCAATAAGCTAGAAT
74861646 AGAGCTGATT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 6 0.14
30 10 0.24
31 26 0.62
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (31 bp):
AGCTCAATAAGCTAGAATTCGAGTTGAATCA
Found at i:74864342 original size:28 final size:27
Alignment explanation
Indices: 74864279--74864348 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
74864269 ATAGTGAGTC
74864279 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
74864306 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74864334 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74864349 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74872264 original size:28 final size:27
Alignment explanation
Indices: 74872201--74872270 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
74872191 ATAGTGAGTC
74872201 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
74872228 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74872256 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74872271 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74874402 original size:27 final size:25
Alignment explanation
Indices: 74874372--74874449 Score: 70
Period size: 27 Copynumber: 3.0 Consensus size: 25
74874362 GCTCTCAATC
*
74874372 TCTTTTTTCTTTCTTTTGTTCTCTTTT
1 TCTTTTTT-TTTCTTTTATTCT-TTTT
* *
74874399 TCTTTCTGTTTTCTTTCATTCTTTTT
1 TCTTT-TTTTTTCTTTTATTCTTTTT
74874425 TCTTTTTCTTTT-TCTTT-TTCTTTTT
1 TCTTTTT-TTTTCT-TTTATTCTTTTT
74874450 CACATGCTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
25 10 0.23
26 15 0.35
27 16 0.37
28 2 0.05
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.78
Consensus pattern (25 bp):
TCTTTTTTTTTCTTTTATTCTTTTT
Found at i:74874432 original size:6 final size:6
Alignment explanation
Indices: 74874375--74874450 Score: 68
Period size: 6 Copynumber: 12.0 Consensus size: 6
74874365 CTCAATCTCT
74874375 TTTTTC TTTCTT- TTGTTCTC TTTTTC --TTTC TGTTTTC TTTCATTC
1 TTTTTC TTT-TTC TT-TT-TC TTTTTC TTTTTC T-TTTTC TTT--TTC
74874420 TTTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
1 -TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
74874451 ACATGCTTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 20
0.75 0.00 0.25
Matches are distributed among these distances:
4 4 0.07
6 34 0.57
7 14 0.23
8 5 0.08
9 3 0.05
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:74874433 original size:32 final size:31
Alignment explanation
Indices: 74874376--74874435 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
74874366 TCAATCTCTT
74874376 TTTTCTTTCTTTTGTTCTCTTTTTCTTTCTG
1 TTTTCTTTCTTTTGTTCTCTTTTTCTTTCTG
*
74874407 TTTTCTTTCATTCTT-TTTTCTTTTTCTTT
1 TTTTCTTTC-TT-TTGTTCTCTTTTTCTTT
74874436 TTCTTTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.35
32 15 0.58
33 2 0.08
ACGTcount: A:0.02, C:0.18, G:0.03, T:0.77
Consensus pattern (31 bp):
TTTTCTTTCTTTTGTTCTCTTTTTCTTTCTG
Found at i:74878421 original size:40 final size:40
Alignment explanation
Indices: 74878362--74878569 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
74878352 CAATTGAATG
* * * *
74878362 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
74878402 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
74878442 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
74878482 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
74878522 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
74878562 ATATCCGG
1 ATATCCGG
74878570 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:74878500 original size:80 final size:80
Alignment explanation
Indices: 74878363--74878569 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
74878353 AATTGAATGA
* * ** * * *
74878363 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
74878428 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
74878441 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
74878506 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
74878523 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
74878570 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:74886569 original size:40 final size:40
Alignment explanation
Indices: 74886510--74886717 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
74886500 CAATTGAATG
* * * *
74886510 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
74886550 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
74886590 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
74886630 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
74886670 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
74886710 ATATCCGG
1 ATATCCGG
74886718 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:74886648 original size:80 final size:80
Alignment explanation
Indices: 74886511--74886717 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
74886501 AATTGAATGA
* * ** * * *
74886511 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
74886576 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
74886589 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
74886654 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
74886671 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
74886718 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:74891395 original size:15 final size:15
Alignment explanation
Indices: 74891363--74891391 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74891353 ATTTTCTATG
74891363 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
74891378 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
74891392 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:74899366 original size:80 final size:80
Alignment explanation
Indices: 74899282--74899430 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
74899272 TATGGTAACC
* * * *
74899282 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
74899346 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
74899362 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
74899427 CCGG
66 CCGG
74899431 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:74899372 original size:40 final size:38
Alignment explanation
Indices: 74899323--74899430 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
74899313 ATCACGATTT
*
74899323 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
74899363 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
74899403 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
74899431 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:74901317 original size:16 final size:16
Alignment explanation
Indices: 74901298--74901330 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
74901288 GAAAAACATT
74901298 TTAAAATCATCAGGAG
1 TTAAAATCATCAGGAG
*
74901314 TTAAAATCGTCAGGAG
1 TTAAAATCATCAGGAG
74901330 T
1 T
74901331 CGTCACACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.27
Consensus pattern (16 bp):
TTAAAATCATCAGGAG
Found at i:74904807 original size:29 final size:29
Alignment explanation
Indices: 74904774--74904875 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
74904764 GTGACGAGAT
*
74904774 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
74904803 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74904832 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74904861 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
74904876 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:74904891 original size:29 final size:29
Alignment explanation
Indices: 74904774--74904935 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
74904764 GTGACGAGAT
* **
74904774 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
74904803 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
74904832 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
74904861 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
74904890 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
74904919 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
74904936 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 111 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:74904904 original size:58 final size:59
Alignment explanation
Indices: 74904770--74904896 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
74904760 TACGGTGACG
* * *
74904770 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
74904827 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
74904885 GGGTATGGCACT
1 AGATATGGCACT
74904897 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:74912817 original size:29 final size:29
Alignment explanation
Indices: 74912749--74912849 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
74912739 GTGACGAGAT
74912749 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
74912777 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74912806 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
74912835 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
74912850 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:74912865 original size:29 final size:29
Alignment explanation
Indices: 74912749--74912909 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
74912739 GTGACGAGAT
* *
74912749 TGGCACTAAGTGTGC-ATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
74912777 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
74912806 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
74912835 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
74912864 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
74912893 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
74912910 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
28 26 0.23
29 87 0.76
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:74912878 original size:58 final size:59
Alignment explanation
Indices: 74912745--74912870 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
74912735 TACGGTGACG
* *
74912745 AGAT-TGGCACTAAGTGTGCATGCTGGAAA-ATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
74912801 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
74912859 GGGTATGGCACT
1 AGATATGGCACT
74912871 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
56 3 0.05
57 25 0.41
58 32 0.52
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:74914700 original size:27 final size:28
Alignment explanation
Indices: 74914644--74914713 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
74914634 AAATTTGTAC
74914644 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
74914672 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
74914699 AGCTCTAAGTGTGCG
1 AGCACTAAGTGTGCG
74914714 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Done.