Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 252 of 328
Found at i:74914724 original size:27 final size:27
Alignment explanation
Indices: 74914644--74914725 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
74914634 AAATTTGTAC
* * *
74914644 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
* * *
74914672 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
74914699 AGCTCTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74914726 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 31 0.63
28 17 0.35
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74917350 original size:2 final size:2
Alignment explanation
Indices: 74917333--74917374 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
74917323 GCTTCACGAC
* *
74917333 AT AT AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74917375 CTTTTCTGGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:74917409 original size:27 final size:27
Alignment explanation
Indices: 74917371--74917430 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
74917361 ATATATATAT
*
74917371 ATATCT-TTTCTGGTGGCCTAGCCACA
1 ATATCTGTTTCTGGTGACCTAGCCACA
* * *
74917397 ATATCTGTTTCTGGTGACTTCGTCACA
1 ATATCTGTTTCTGGTGACCTAGCCACA
74917424 ATATCTG
1 ATATCTG
74917431 GCAGCTTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (27 bp):
ATATCTGTTTCTGGTGACCTAGCCACA
Found at i:74919130 original size:28 final size:28
Alignment explanation
Indices: 74919094--74919194 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
74919084 CAAATATGGT
74919094 ACTTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTACGAAATATTGAGAATGAC
*
74919122 ACTTAGTGTACGAAATATTGAGAATGGC
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
74919150 ACTTAGTGTGCGAGATATTGAGAATGA-
1 ACTTAGTGTACGAAATATTGAGAATGAC
* *
74919177 ACTTAGTGTGCAAAATAT
1 ACTTAGTGTACGAAATAT
74919195 CGAATGATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
27 16 0.24
28 51 0.76
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.30
Consensus pattern (28 bp):
ACTTAGTGTACGAAATATTGAGAATGAC
Found at i:74925286 original size:70 final size:71
Alignment explanation
Indices: 74925195--74925357 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
74925185 GAGATGTATC
74925195 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74925260 AGGACA
66 AGGACA
*
74925266 CCATGTA-ACAAGAGACCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74925330 AGGACA
66 AGGACA
74925336 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74925358 AGACAAATCG
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
70 69 0.78
71 20 0.22
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74933794 original size:40 final size:40
Alignment explanation
Indices: 74933749--74933915 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
74933739 CGGAATATAA
74933749 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74933789 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74933829 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74933869 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74933908 CCGGATAT
1 CCGGATAT
74933916 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74933899 original size:80 final size:79
Alignment explanation
Indices: 74933765--74933915 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
74933755 ATAATCACGT
*
74933765 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
74933830 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
74933845 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
74933908 CCGGATAT
64 CCGGATAT
74933916 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:74942416 original size:40 final size:40
Alignment explanation
Indices: 74942332--74942516 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
74942322 TCGAATGATG
*
74942332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAT
* *
74942371 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACTAAT
* * *
74942412 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTGACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT
* *
74942451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT
* *
74942490 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
74942517 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT
Found at i:74942538 original size:79 final size:78
Alignment explanation
Indices: 74942333--74942548 Score: 242
Period size: 79 Copynumber: 2.7 Consensus size: 78
74942323 CGAATGATGT
* *
74942333 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTATATCCGG-TTAAG-TCCGAAGGCATTT
*
74942397 GTGCGAGTTACTAATT
63 GTGCGAGTTACTAATA
* * *
74942413 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTGACCAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCC-GGTTAAGT-CCGAAGGCATTTG
74942477 TGCGAGTTACT-ATAA
64 TGCGAGTTACTAAT-A
* ** *
74942492 CCGGGCTATGTCCCGAAGGCATTTGAACGAGT-AGCTATATCCGGTTAAATTCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATATCCGGTT-AAGTCCGAAG
74942549 ATACGTGATT
Statistics
Matches: 116, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.03
79 68 0.59
80 45 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:74946363 original size:38 final size:38
Alignment explanation
Indices: 74946298--74946391 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
74946288 TCAATCATGC
* *
74946298 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
74946337 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
74946375 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
74946392 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 41 0.79
39 11 0.21
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:74946629 original size:24 final size:24
Alignment explanation
Indices: 74946583--74946677 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
74946573 GCTTTATCAT
*
74946583 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
74946608 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
74946632 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
74946655 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74946678 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:74946662 original size:47 final size:49
Alignment explanation
Indices: 74946583--74946676 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
74946573 GCTTTATCAT
*
74946583 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
74946632 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
74946677 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:74946752 original size:20 final size:20
Alignment explanation
Indices: 74946727--74946786 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
74946717 TATGATTACC
74946727 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
74946747 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
74946767 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
74946787 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:74946861 original size:25 final size:25
Alignment explanation
Indices: 74946829--74946876 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74946819 ATACATAAAC
* * *
74946829 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74946854 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74946877 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74953041 original size:38 final size:38
Alignment explanation
Indices: 74952976--74953069 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 38
74952966 TCAATCATGC
* *
74952976 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
74953015 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
74953053 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
74953070 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 41 0.79
39 11 0.21
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:74953307 original size:24 final size:24
Alignment explanation
Indices: 74953261--74953355 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
74953251 GCTTTATCAT
*
74953261 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
74953286 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
74953310 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
74953333 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74953356 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:74953340 original size:47 final size:49
Alignment explanation
Indices: 74953261--74953354 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
74953251 GCTTTATCAT
*
74953261 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
74953310 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
74953355 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:74953431 original size:20 final size:20
Alignment explanation
Indices: 74953406--74953465 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
74953396 TATGATTACC
74953406 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
74953426 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
74953446 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
74953466 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:74953540 original size:25 final size:25
Alignment explanation
Indices: 74953508--74953555 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74953498 ATACATAAAC
* * *
74953508 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74953533 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74953556 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74956216 original size:56 final size:56
Alignment explanation
Indices: 74956122--74956227 Score: 142
Period size: 56 Copynumber: 1.9 Consensus size: 56
74956112 AGGATTTTGA
* * * * *
74956122 TATATGTGTGCGAGTAAGACCACGTTTTATACATTGGCATCGATATGTGACTCCAG
1 TATATGTGTGCGAGTAAGACCACGTCTGAGACAGTGGCATCAATATGTGACTCCAG
*
74956178 TATATGTGTGTGAGTAAGACC-CTGTCTGAGACAGTGGCATCAATATGTGA
1 TATATGTGTGCGAGTAAGACCAC-GTCTGAGACAGTGGCATCAATATGTGA
74956228 TTACATGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 1 0.02
56 42 0.98
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACGTCTGAGACAGTGGCATCAATATGTGACTCCAG
Found at i:74958671 original size:42 final size:42
Alignment explanation
Indices: 74958545--74958673 Score: 138
Period size: 42 Copynumber: 3.1 Consensus size: 42
74958535 TTACATTTAA
* * *
74958545 TCTCGTATCGATGCCAATAGCCCA-ACTATGGTCTTAA-A-GAAG
1 TCTCATATCGATGCC-ATATCCCAGA-TATGGTC-TAACACGTAG
* *
74958587 TCTCATATCGATGCCATATCCCAGATATGGTCTTACATGTAG
1 TCTCATATCGATGCCATATCCCAGATATGGTCTAACACGTAG
* * *
74958629 TCTCATATTGATTCCATATCCTAGATATGGTCTAACACGTAG
1 TCTCATATCGATGCCATATCCCAGATATGGTCTAACACGTAG
74958671 TCT
1 TCT
74958674 TAGTAACCCT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
40 2 0.03
41 15 0.20
42 58 0.77
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (42 bp):
TCTCATATCGATGCCATATCCCAGATATGGTCTAACACGTAG
Found at i:74960547 original size:20 final size:20
Alignment explanation
Indices: 74960494--74960552 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
74960484 AAAAATAACC
*
74960494 TGGGAATTAAGAGGGAATTT
1 TGGGAATGAAGAGGGAATTT
* *
74960514 TGGAAACGGAAGAGGGAATTT
1 TGGGAA-TGAAGAGGGAATTT
74960535 TGGGAATGAAGAGGGAAT
1 TGGGAATGAAGAGGGAAT
74960553 GAAGAGGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.37, C:0.02, G:0.39, T:0.22
Consensus pattern (20 bp):
TGGGAATGAAGAGGGAATTT
Found at i:74962007 original size:17 final size:19
Alignment explanation
Indices: 74961987--74962023 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
74961977 TTTTGAGCAA
74961987 TTTAA-TTT-TTTTATTTT
1 TTTAACTTTATTTTATTTT
*
74962004 TTTAACTTTATTTTGTTTT
1 TTTAACTTTATTTTATTTT
74962023 T
1 T
74962024 ATTTGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 3 0.18
19 9 0.53
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTAACTTTATTTTATTTT
Found at i:74962078 original size:2 final size:2
Alignment explanation
Indices: 74962065--74962105 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
74962055 AACTAGTCCT
*
74962065 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74962106 TTGAACAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:74962418 original size:38 final size:38
Alignment explanation
Indices: 74962343--74962419 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
74962333 CTAAAATTTT
* *
74962343 CGTTTGAAATGATGATTTAACGTGTCACGTCAGCTTAC
1 CGTTTGAAATGATAATTTAACGTGTCACGTCAACTTAC
**
74962381 CGTTTGAAATGATAATTTAACGTGTCGTGTCAACTTAC
1 CGTTTGAAATGATAATTTAACGTGTCACGTCAACTTAC
74962419 C
1 C
74962420 ATTATACTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (38 bp):
CGTTTGAAATGATAATTTAACGTGTCACGTCAACTTAC
Found at i:74967288 original size:72 final size:72
Alignment explanation
Indices: 74967192--74967358 Score: 221
Period size: 72 Copynumber: 2.3 Consensus size: 72
74967182 GTTCAACTTT
* * *
74967192 TAGGACAGCTTGCTCTCCATCCGAATAGA-TAACATCCATCATCTGAATGACGTTTT-AGTATAA
1 TAGGACAGTTTGCTCTCCATCCGAATA-ACTAACATCCACCATCCGAATGACGTTTTGA-TATAA
74967255 CTCAACTAC
64 CTCAACTAC
* * * * *
74967264 TAGGAAAGTTTGCTCTCCATCCGAATAACTAATATTCGCCATCCGAATGGCGTTTTGATATAACT
1 TAGGACAGTTTGCTCTCCATCCGAATAACTAACATCCACCATCCGAATGACGTTTTGATATAACT
74967329 CAACTAC
66 CAACTAC
*
74967336 TAGGACATTTTGCTCTCCATCCG
1 TAGGACAGTTTGCTCTCCATCCG
74967359 GATGGCTTTA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 1 0.01
72 81 0.98
73 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (72 bp):
TAGGACAGTTTGCTCTCCATCCGAATAACTAACATCCACCATCCGAATGACGTTTTGATATAACT
CAACTAC
Found at i:74969655 original size:35 final size:35
Alignment explanation
Indices: 74969609--74969712 Score: 163
Period size: 35 Copynumber: 3.0 Consensus size: 35
74969599 TTACAGTGTT
74969609 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
*
74969644 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAAC
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
* * * *
74969679 AACTGGTATGTTGGATGGTACTGACTCTTATGAG
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAG
74969713 TATCTGGTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.20, C:0.13, G:0.32, T:0.35
Consensus pattern (35 bp):
AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
Found at i:74969720 original size:35 final size:35
Alignment explanation
Indices: 74969620--74969732 Score: 140
Period size: 35 Copynumber: 3.2 Consensus size: 35
74969610 ATTGGTGTGC
* *
74969620 TGGATGGTACTGGCTCTTATGAGCAAT-TGGTGTGC
1 TGGATGGTACTGGCTCTTATGAG-AATCTGGTATGT
*
74969655 TGGATGGTACTGGCTCTTATGA-ACAACTGGTATGT
1 TGGATGGTACTGGCTCTTATGAGA-ATCTGGTATGT
* *
74969690 TGGATGGTACTGACTCTTATGAGTATCTGGTATGT
1 TGGATGGTACTGGCTCTTATGAGAATCTGGTATGT
*
74969725 TGAATGGT
1 TGGATGGT
74969733 TAACCGAGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
33 1 0.01
34 1 0.01
35 66 0.97
ACGTcount: A:0.20, C:0.12, G:0.31, T:0.36
Consensus pattern (35 bp):
TGGATGGTACTGGCTCTTATGAGAATCTGGTATGT
Found at i:74983343 original size:365 final size:365
Alignment explanation
Indices: 74982673--74983408 Score: 1330
Period size: 365 Copynumber: 2.0 Consensus size: 365
74982663 CCTTCAACAA
*
74982673 GTGAAATACAAGCCATATTTATAGCCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
1 GTGAAATACAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
* * *
74982738 GGGACGGCTATCTTAAGCCTTAAGGCTTTAGGAAATTTCCTAGCAATTTCTTGAACATATTCTAG
66 GGGACGGCTATCTTAAGCCTTAAAGCTTTAAGAAATTTCCTAACAATTTCTTGAACATATTCTAG
*
74982803 AGTCTTCTTGGCTTGGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
131 AGTCTTCTTGGCTTCGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
*
74982868 TGAGAAGCTTTATGGACTAGTCCACATTCGGCCAAGGTGTTTGAAAGTAGTTTGAATGCTTCTTA
196 TGAGAAGCTTTATGGACTAGTCCACATTCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTTA
* *
74982933 AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCTAATGGC
261 AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGAAGGAATCCAATGGC
*
74982998 CATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
326 CATTCAAGTGTGAAAGGCCGAATATGTATAGTACTTGTGG
74983038 GTGAAATACAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
1 GTGAAATACAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
74983103 GGGACGGCTATCTTAAGCCTTAAAGCTTTAAGAAATTTCCTAACAATTTCTTGAACATATTCTAG
66 GGGACGGCTATCTTAAGCCTTAAAGCTTTAAGAAATTTCCTAACAATTTCTTGAACATATTCTAG
*
74983168 AGTCTTCTTGGCTTCGGAAACTGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
131 AGTCTTCTTGGCTTCGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
*
74983233 T-AGGAAGCTTTATGGAGTAGTCCACATTCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTT
196 TGA-GAAGCTTTATGGACTAGTCCACATTCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTT
*
74983297 AAATGTGGTGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGAAGGAATCCAATGG
260 AAATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGAAGGAATCCAATGG
* *
74983362 CCATTCAAGTGTGAAAGGCCGAATATGTATAGTATTTGTGT
325 CCATTCAAGTGTGAAAGGCCGAATATGTATAGTACTTGTGG
74983403 GTGAAA
1 GTGAAA
74983409 ACATGGAACC
Statistics
Matches: 356, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
364 1 0.00
365 355 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (365 bp):
GTGAAATACAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
GGGACGGCTATCTTAAGCCTTAAAGCTTTAAGAAATTTCCTAACAATTTCTTGAACATATTCTAG
AGTCTTCTTGGCTTCGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
TGAGAAGCTTTATGGACTAGTCCACATTCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTTA
AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGAAGGAATCCAATGGC
CATTCAAGTGTGAAAGGCCGAATATGTATAGTACTTGTGG
Found at i:74983719 original size:27 final size:26
Alignment explanation
Indices: 74983671--74983726 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
74983661 AGCAGCAACA
*
74983671 ATTAAATTTGTCCCTAAGCTAGACAC
1 ATTAAATTTGTCCCTAAACTAGACAC
74983697 ATTAAATTGATGT-CCTAAACTAGACAC
1 ATTAAATT--TGTCCCTAAACTAGACAC
74983724 ATT
1 ATT
74983727 TAAGCTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 16 0.59
28 3 0.11
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
ATTAAATTTGTCCCTAAACTAGACAC
Found at i:74989869 original size:24 final size:25
Alignment explanation
Indices: 74989805--74989871 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 25
74989795 GGACACACCA
* *
74989805 CAGCTCTCATGAGCTTTCTGTTATTT
1 CAGCTCTTATGAGCTTCCTG-TATTT
* * *
74989831 -AGTTCGTATAAGCTTCCTG-ATTT
1 CAGCTCTTATGAGCTTCCTGTATTT
74989854 CAGCTCTTATGAGCTTCC
1 CAGCTCTTATGAGCTTCC
74989872 CAATATACAA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
23 4 0.12
24 14 0.44
25 14 0.44
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (25 bp):
CAGCTCTTATGAGCTTCCTGTATTT
Found at i:74992307 original size:40 final size:40
Alignment explanation
Indices: 74992262--74992426 Score: 181
Period size: 40 Copynumber: 4.2 Consensus size: 40
74992252 CGGAATATAA
74992262 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
74992302 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74992341 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTATC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74992381 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74992421 CCGGAT
1 CCGGAT
74992427 GTCATTCAAT
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.31
40 71 0.68
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74992326 original size:39 final size:39
Alignment explanation
Indices: 74992278--74992387 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
74992268 ATAATCACGT
* *
74992278 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGA-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
* *
74992317 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
*
74992357 GCACAATTGCCTTCGGGTCTTATCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
74992388 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 33 0.52
40 30 0.48
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
Found at i:74999516 original size:40 final size:40
Alignment explanation
Indices: 74999471--74999638 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74999461 CGGAATATAA
74999471 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74999511 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74999551 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74999591 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74999631 CCGGATAT
1 CCGGATAT
74999639 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75000095 original size:57 final size:56
Alignment explanation
Indices: 75000032--75000139 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 56
75000022 CCTTAGTATT
75000032 TTCGGCC-AAGAAGATGAGAAAGGATGAACAAATTTTTTCTTTTCTTTCTTTAGGACA
1 TTCGGCCAAAG-AGATGAGAAAGGATGAAC-AATTTTTTCTTTTCTTTCTTTAGGACA
* * * * *
75000089 TTCGGCCAAAGTGTTTAGAATGGATGAACAATTTTTTTTTTTCTTTCTTTA
1 TTCGGCCAAAGAGATGAGAAAGGATGAACAATTTTTTCTTTTCTTTCTTTA
75000140 ATGCTAGTCT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 21 0.47
57 21 0.47
58 3 0.07
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.42
Consensus pattern (56 bp):
TTCGGCCAAAGAGATGAGAAAGGATGAACAATTTTTTCTTTTCTTTCTTTAGGACA
Found at i:75002206 original size:93 final size:93
Alignment explanation
Indices: 75002094--75002265 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75002084 GCCCATAAGT
* *
75002094 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75002159 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75002187 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75002252 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
75002266 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75002261 original size:46 final size:46
Alignment explanation
Indices: 75002086--75002261 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75002076 TGTAACCCGC
* * *
75002086 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
75002132 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
75002182 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
75002225 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75002262 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:75016045 original size:80 final size:80
Alignment explanation
Indices: 75015961--75016109 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
75015951 TATGGTAACC
* * * *
75015961 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
75016025 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
75016041 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
75016106 CCGG
66 CCGG
75016110 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:75016051 original size:40 final size:38
Alignment explanation
Indices: 75016002--75016109 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
75015992 ATCACGATTT
*
75016002 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
75016042 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
75016082 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
75016110 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:75018101 original size:25 final size:25
Alignment explanation
Indices: 75018070--75018163 Score: 116
Period size: 25 Copynumber: 3.8 Consensus size: 25
75018060 ATTCAGACCT
* *
75018070 ACAGCTCGTGTGAGTATACCGATTT
1 ACAGCTCGTGTGAGCATACCGATTC
* * * *
75018095 ATAGCTCGTGAGAGCATACCAATCC
1 ACAGCTCGTGTGAGCATACCGATTC
*
75018120 ACAGCTCGAGTGAGCATACCGATTC
1 ACAGCTCGTGTGAGCATACCGATTC
*
75018145 ACAGCTCGTATGAGCATAC
1 ACAGCTCGTGTGAGCATAC
75018164 ATGTACATGA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCGATTC
Found at i:75032004 original size:29 final size:28
Alignment explanation
Indices: 75031942--75032042 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
75031932 GTGACGAGAT
* * *
75031942 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-GATATA
* *
75031971 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGA-TATA
* *
75032000 TGGCACTATGTGTGCGGGCTT-GA-ATCA
1 TGGCACTAAGTGTGCGAGCTTGGATAT-A
75032027 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75032043 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.03
27 16 0.27
28 3 0.05
29 39 0.65
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGGATATA
Found at i:75032049 original size:27 final size:27
Alignment explanation
Indices: 75031972--75032049 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 27
75031962 TGTAATGTAC
*
75031972 GGCACTAAGTGTGCGAGTTTGGACTATAT
1 GGCACTAAGTGTGCGAGATT-GAC-ATAT
* * *
75032001 GGCACTATGTGTGCGGGCTTGA-ATCAT
1 GGCACTAAGTGTGCGAGATTGACAT-AT
*
75032028 GGCACTAAGTGTGCGTGATTGA
1 GGCACTAAGTGTGCGAGATTGA
75032050 GTATTAAGCA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 21 0.50
28 2 0.05
29 17 0.40
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.29
Consensus pattern (27 bp):
GGCACTAAGTGTGCGAGATTGACATAT
Found at i:75039966 original size:29 final size:29
Alignment explanation
Indices: 75039904--75040006 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
75039894 GTGACGAGAT
* * *
75039904 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
75039933 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
75039962 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
75039991 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75040007 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 3 0.05
29 57 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:75044643 original size:40 final size:40
Alignment explanation
Indices: 75044569--75044786 Score: 354
Period size: 40 Copynumber: 5.5 Consensus size: 40
75044559 AACCCAAGTA
* *
75044569 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
75044608 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
75044648 CCTTCGGGACTTAG-CCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
75044687 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
75044727 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
75044766 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
75044787 GTCATCCGAA
Statistics
Matches: 169, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
39 74 0.44
40 94 0.56
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:75044700 original size:79 final size:79
Alignment explanation
Indices: 75044569--75044786 Score: 359
Period size: 79 Copynumber: 2.8 Consensus size: 79
75044559 AACCCAAGTA
* *
75044569 CCTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCGGATATAGTCAA-TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
75044633 TCACTAGCACAAATG
65 TCACTAGCACAAATG
75044648 CCTTCGGGACTTAGCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
75044713 CACTAGCACAACTG
66 CACTAGCACAAATG
* *
75044727 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATGCCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAG-CCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGAT
75044787 GTCATCCGAA
Statistics
Matches: 132, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
79 110 0.83
80 22 0.17
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATG
Found at i:75048611 original size:29 final size:28
Alignment explanation
Indices: 75048579--75048681 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
75048569 GTGACGAGAT
* *
75048579 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
75048608 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
75048637 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
75048666 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75048682 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:75056410 original size:29 final size:28
Alignment explanation
Indices: 75056378--75056480 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
75056368 GTGACGAGAT
* *
75056378 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
75056407 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
75056436 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
75056465 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75056481 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:75058801 original size:46 final size:47
Alignment explanation
Indices: 75058643--75058801 Score: 116
Period size: 47 Copynumber: 3.4 Consensus size: 47
75058633 GTAAGGTGCT
* **
75058643 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTCA--AGTT
1 GATG-CATGTCCTAGACATGGTCTTACACTGACT-ATCATCT-AGTAGCC
* *
75058690 GTTACCATGTCCTAGACATGGTCTTACACTGACTATCATCTAGTAGCC
1 GAT-GCATGTCCTAGACATGGTCTTACACTGACTATCATCTAGTAGCC
* * * * *
75058738 GATGCATATCCCT-GACAT-GTCTTACCCTGGCT-TACGTCTCG-AGGCC
1 GATGCATGT-CCTAGACATGGTCTTACACTGACTAT-CATCTAGTA-GCC
75058784 GATGCATGTCCTAGACAT
1 GATGCATGTCCTAGACAT
75058802 ATTTATACTA
Statistics
Matches: 91, Mismatches: 13, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
45 5 0.05
46 36 0.40
47 43 0.47
48 7 0.08
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
GATGCATGTCCTAGACATGGTCTTACACTGACTATCATCTAGTAGCC
Found at i:75067433 original size:27 final size:27
Alignment explanation
Indices: 75067403--75067494 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
75067393 ATTACCAAAG
* *
75067403 TACCCTCGATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
75067430 TACCCTTGATATACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
75067457 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
75067484 TACCCTCGATT
1 TACCCTCGATT
75067495 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:75067556 original size:27 final size:27
Alignment explanation
Indices: 75067493--75067622 Score: 127
Period size: 27 Copynumber: 4.8 Consensus size: 27
75067483 TTACCCTCGA
* ** *
75067493 TTGTGAAATTACTGAAATACCCTTATA
1 TTGTAAAATTACCAAAATACCCTTATT
** *
75067520 GGGTAGAATTACCAAAATACCCTTATT
1 TTGTAAAATTACCAAAATACCCTTATT
**
75067547 TTGTAAAATTACCAAAATACCAC-TGGT
1 TTGTAAAATTACCAAAATACC-CTTATT
* * * *
75067574 TTGTGAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCCTTATT
75067601 TTGTAAAATTACCAAAATACCC
1 TTGTAAAATTACCAAAATACCC
75067623 CTGATTTACA
Statistics
Matches: 82, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 80 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTTATT
Found at i:75067629 original size:27 final size:27
Alignment explanation
Indices: 75067526--75067651 Score: 130
Period size: 27 Copynumber: 4.7 Consensus size: 27
75067516 TATAGGGTAG
*
75067526 AATTACCAAAATA-CCCTTATTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
75067553 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
75067580 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
**
75067607 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
75067634 ATTTACAAAAATACCCCT
1 AATTACCAAAATACCCCT
75067652 AATAGGTAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.04
27 71 0.88
28 7 0.09
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:75067645 original size:81 final size:81
Alignment explanation
Indices: 75067493--75067648 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
75067483 TTACCCTCGA
* * * * **
75067493 TTGTGAAATTACTGAAATACCCTTATAGGGTAGAATTACCAAAATACCCTTATTTTGTAAAATTA
1 TTGTGAAATTACCGAAATACCCTAATAGGGTAAAATTACCAAAATACCCTGATTTTACAAAATTA
*
75067558 CCAAAATACCACTGGT
66 CAAAAATACCACTGGT
** *
75067574 TTGTGAAATTACCGAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCCTGA-TTTACAAATT
1 TTGTGAAATTACCGAAATACCCT-AATAGGGTAAAATTACCAAAATA-CCCTGATTTTACAAAAT
75067637 TACAAAAATACC
64 TACAAAAATACC
75067649 CCTAATAGGT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
81 56 0.89
82 7 0.11
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (81 bp):
TTGTGAAATTACCGAAATACCCTAATAGGGTAAAATTACCAAAATACCCTGATTTTACAAAATTA
CAAAAATACCACTGGT
Found at i:75067646 original size:54 final size:54
Alignment explanation
Indices: 75067526--75067649 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 54
75067516 TATAGGGTAG
* * * **
75067526 AATTACCAAAATACCCTTATTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTGACA
* *
75067580 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTT-ACA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTGACA
*
75067633 AATTTACAAAAATACCC
1 AA-TTACCAAAATACCC
75067650 CTAATAGGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
53 3 0.05
54 57 0.95
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTGACA
Found at i:75067686 original size:27 final size:27
Alignment explanation
Indices: 75067643--75067743 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
75067633 AATTTACAAA
*
75067643 AATACCCCTAATA-GGTAAAAAAACCGT
1 AATACCCCT-GTAGGGTAAAAAAACCGT
***
75067670 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAAACCGT
***
75067697 AATACCCCTGTAGGGTAAAGTGACCGT
1 AATACCCCTGTAGGGTAAAAAAACCGT
* *
75067724 AATACCCCTATATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
75067744 TGATGAATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
26 3 0.05
27 60 0.94
28 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAAACCGT
Found at i:75068589 original size:25 final size:25
Alignment explanation
Indices: 75068561--75068630 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
75068551 AGGAAGTGCT
75068561 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCG
*
75068586 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
75068611 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
75068631 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
25 41 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:75074736 original size:22 final size:22
Alignment explanation
Indices: 75074691--75074733 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
75074681 TAAGCCAACA
*
75074691 ACTACCCTTAATTAAGTTATTC
1 ACTACCCTTAATTAAATTATTC
75074713 ACTACCCTTAATTAAAATTAT
1 ACTACCCTTAATT-AAATTAT
75074734 CACCATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.37, C:0.21, G:0.02, T:0.40
Consensus pattern (22 bp):
ACTACCCTTAATTAAATTATTC
Found at i:75075457 original size:12 final size:12
Alignment explanation
Indices: 75075440--75075466 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
75075430 GCTTGTGAGT
75075440 AAAAAAAATTTG
1 AAAAAAAATTTG
75075452 AAAAAAAATTTG
1 AAAAAAAATTTG
75075464 AAA
1 AAA
75075467 TATGTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (12 bp):
AAAAAAAATTTG
Found at i:75084211 original size:22 final size:22
Alignment explanation
Indices: 75084181--75084238 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
75084171 AAGAAATTAC
75084181 ATTTTATTTTATTGCTAATTT-T
1 ATTTTATTTTATTGC-AATTTAT
*
75084203 -TTTTCATTTTTTTTGCAATTTAT
1 ATTTT-A-TTTTATTGCAATTTAT
75084226 ATTTTATTTTATT
1 ATTTTATTTTATT
75084239 TTCTCTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
21 4 0.13
22 12 0.40
23 10 0.33
24 4 0.13
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (22 bp):
ATTTTATTTTATTGCAATTTAT
Found at i:75084218 original size:23 final size:23
Alignment explanation
Indices: 75084181--75084240 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 23
75084171 AAGAAATTAC
*
75084181 ATTTTA-TTTTATTGCTAATTT-T
1 ATTTTATTTTTTTTGC-AATTTAT
75084203 -TTTTCATTTTTTTTGCAATTTAT
1 ATTTT-ATTTTTTTTGCAATTTAT
75084226 ATTTTATTTTATTTT
1 ATTTTATTTT-TTTT
75084241 CTCTCTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
21 4 0.12
22 6 0.19
23 14 0.44
24 8 0.25
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (23 bp):
ATTTTATTTTTTTTGCAATTTAT
Found at i:75094377 original size:38 final size:38
Alignment explanation
Indices: 75094324--75094401 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
75094314 GTAAATTTCA
*
75094324 CAAGATTCTTAAGCGTTGCCAATCATCTTTCCTGAGAC
1 CAAGATTCTTAAGCGTTGCCAATCATCTTCCCTGAGAC
*
75094362 CAAGATTCTTTAGCGTTGCCAATCATCTTCCCTGAGAC
1 CAAGATTCTTAAGCGTTGCCAATCATCTTCCCTGAGAC
75094400 CA
1 CA
75094402 TATCCTAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (38 bp):
CAAGATTCTTAAGCGTTGCCAATCATCTTCCCTGAGAC
Found at i:75101937 original size:2 final size:2
Alignment explanation
Indices: 75101930--75101956 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
75101920 TTTGGGATAA
75101930 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
75101957 CTATTATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75103575 original size:37 final size:37
Alignment explanation
Indices: 75103525--75103598 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
75103515 TATTTAAGCA
75103525 ACCTTAGTATGAACAATTGGTTAGCAGGTAAGAGGGT
1 ACCTTAGTATGAACAATTGGTTAGCAGGTAAGAGGGT
*
75103562 ACCTTAGTATGAACCATTGGTTAGCAGGTAAGAGGGT
1 ACCTTAGTATGAACAATTGGTTAGCAGGTAAGAGGGT
75103599 TATGAGGTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (37 bp):
ACCTTAGTATGAACAATTGGTTAGCAGGTAAGAGGGT
Found at i:75105345 original size:25 final size:24
Alignment explanation
Indices: 75105307--75105353 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
75105297 GAGAAAAAGG
*
75105307 AAGAAGGATAAAAATATATATTTTT
1 AAGAAAGATAAAAA-ATATATTTTT
* *
75105332 AAGAAAGATGAAAAATTTATTT
1 AAGAAAGATAAAAAATATATTT
75105354 CCATTCCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 7 0.37
25 12 0.63
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (24 bp):
AAGAAAGATAAAAAATATATTTTT
Found at i:75111339 original size:14 final size:14
Alignment explanation
Indices: 75111305--75111342 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
75111295 GATGGGATAG
*
75111305 GATTCTGTGT-TCT
1 GATTCTGTATATCT
75111318 GA-TCTGTATATCT
1 GATTCTGTATATCT
75111331 GATTCTGTATAT
1 GATTCTGTATAT
75111343 TGTAACTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 6 0.27
13 7 0.32
14 9 0.41
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.50
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:75119415 original size:51 final size:48
Alignment explanation
Indices: 75119350--75119495 Score: 184
Period size: 49 Copynumber: 2.9 Consensus size: 48
75119340 TAGCCAAAGG
* *
75119350 TATCTGGTACGCATAGTAGCCTAAACTTAGTACTACACACGTGATCGAAGT
1 TATC-GGTACGCATAGTAGCCTACACTTAGTACTACACACGTGA-CCAA-T
* * *
75119401 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATC-GGTACGCATAGTAGCCTACACTTAGTACTACACACGTGACCAAT
* *
75119450 TATTCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TA-TCGGTACGCATAGTAGCCTACACTTAGTACTACACACGTGACC
75119496 TCACAATAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
49 39 0.47
50 5 0.06
51 39 0.47
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
TATCGGTACGCATAGTAGCCTACACTTAGTACTACACACGTGACCAAT
Found at i:75119477 original size:49 final size:51
Alignment explanation
Indices: 75119350--75119490 Score: 171
Period size: 51 Copynumber: 2.8 Consensus size: 51
75119340 TAGCCAAAGG
* * * * *
75119350 TATCTGGTACGCATAGTAGCCTAAACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGATCCAAGT
* * *
75119401 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
1 TATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGATCCAAGT
*
75119450 TATTC-GGTACACGTAGTAGCCTACACTTAGTACTACACACG
1 TA-TCGGGTACACATAGTAGCCTACACTTAGTACTACACACG
75119491 TGACCTCACA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
49 35 0.44
50 5 0.06
51 39 0.49
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (51 bp):
TATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGATCCAAGT
Found at i:75124429 original size:28 final size:28
Alignment explanation
Indices: 75124385--75124448 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
75124375 CGTGTCCTTG
* *
75124385 GCCCGTGTGCTTTACACAGCCATGACAC
1 GCCCATGTGCTTCACACAGCCATGACAC
* *
75124413 GCCCATGTGCTTCACACGGCCATGACAT
1 GCCCATGTGCTTCACACAGCCATGACAC
75124441 GCCCATGT
1 GCCCATGT
75124449 CCTAGCCTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.36, G:0.22, T:0.22
Consensus pattern (28 bp):
GCCCATGTGCTTCACACAGCCATGACAC
Found at i:75125479 original size:47 final size:48
Alignment explanation
Indices: 75125410--75125636 Score: 206
Period size: 47 Copynumber: 4.9 Consensus size: 48
75125400 GGTAAGGTGC
*
75125410 CGATGCCATGTGCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
* * *
75125457 CGATGCCATGTCCTAGACATGGTCATACACTGACT-ATCATCTCATAG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGT
* * *
75125504 CAGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGAGGC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGT
* * * * *
75125551 CGATG-CATGTCCCAGACAT-GTCTTATAGTAGCAC-TCGTCTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
* *
75125595 GCTGATGCTATGTCCCAGACATGGTCTTACACTAGCTC-TCAT
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT
75125637 AATGTGGCCA
Statistics
Matches: 148, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
45 2 0.01
46 58 0.39
47 67 0.45
48 21 0.14
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
Found at i:75128635 original size:26 final size:26
Alignment explanation
Indices: 75128606--75128659 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
75128596 ATGGCTTTAG
*
75128606 TTGTCTTGAGGCATAGGCTATAACCT
1 TTGTCTTGAGGCATAGGCTACAACCT
75128632 TTGTCTTGAGGCATAGGCTACAACCT
1 TTGTCTTGAGGCATAGGCTACAACCT
75128658 TT
1 TT
75128660 CCTTCTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (26 bp):
TTGTCTTGAGGCATAGGCTACAACCT
Found at i:75134428 original size:79 final size:81
Alignment explanation
Indices: 75134327--75134511 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
75134317 ACGACTCGCT
** * *
75134327 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
75134390 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
75134407 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
75134471 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
75134487 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75134512 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:75134511 original size:40 final size:39
Alignment explanation
Indices: 75134320--75134511 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
75134310 GGATATAACG
* ** * *
75134320 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75134360 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
75134400 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75134439 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
75134479 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
75134512 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:75142484 original size:79 final size:82
Alignment explanation
Indices: 75142368--75142552 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
75142358 ACGACTCGCT
** * *
75142368 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
75142431 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
75142448 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
75142511 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
75142528 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75142553 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:75142552 original size:40 final size:39
Alignment explanation
Indices: 75142361--75142552 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
75142351 GGATATAACG
* ** * *
75142361 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75142401 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
75142441 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75142480 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
75142520 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
75142553 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:75144350 original size:31 final size:31
Alignment explanation
Indices: 75144306--75144407 Score: 123
Period size: 31 Copynumber: 3.1 Consensus size: 31
75144296 CCTTTTCATA
*
75144306 TTTCATATCTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
75144343 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
75144375 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
75144406 TT
1 TT
75144408 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
31 32 0.52
32 1 0.02
33 1 0.02
37 1 0.02
38 27 0.44
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:75144390 original size:38 final size:38
Alignment explanation
Indices: 75144283--75144390 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
75144273 TCAATCATGC
* *
75144283 ACTGGGCCGTAGCCCTTTTCATATTTCATATCTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
75144322 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
75144360 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
75144391 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 54 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:75144645 original size:24 final size:24
Alignment explanation
Indices: 75144599--75144717 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
75144589 ACTTTATCAT
*
75144599 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
75144624 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
75144648 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
75144671 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
75144695 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75144718 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75144678 original size:47 final size:48
Alignment explanation
Indices: 75144599--75144717 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
75144589 ACTTTATCAT
*
75144599 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
75144648 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
75144695 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75144718 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:75144793 original size:20 final size:20
Alignment explanation
Indices: 75144768--75144827 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
75144758 TATGATTACC
75144768 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
75144788 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
75144808 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
75144828 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:75144902 original size:25 final size:25
Alignment explanation
Indices: 75144870--75144917 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75144860 ATACATAAAC
* * *
75144870 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75144895 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75144918 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75152696 original size:31 final size:31
Alignment explanation
Indices: 75152652--75152752 Score: 96
Period size: 38 Copynumber: 3.1 Consensus size: 31
75152642 CCTTTTCATA
*
75152652 TTTCATATCTCATAATAATGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATAATGGGCCGAAG-C----C-T
*
75152689 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATAATGGGCCGAAGCCT
* *
75152721 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATAATAATGGGCCGAAGCCT
75152751 TT
1 TT
75152753 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
30 13 0.22
31 18 0.30
32 1 0.02
33 1 0.02
37 1 0.02
38 26 0.43
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATAATGGGCCGAAGCCT
Found at i:75152736 original size:38 final size:38
Alignment explanation
Indices: 75152629--75152736 Score: 171
Period size: 38 Copynumber: 2.8 Consensus size: 38
75152619 TCAATCATGC
* *
75152629 ACTGGGCCGTAGCCCTTTTCATATTTCATATCTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
* *
75152668 AATGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
75152706 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
75152737 ACTGGCCGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 53 0.84
39 10 0.16
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:75152746 original size:30 final size:31
Alignment explanation
Indices: 75152690--75152752 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
75152680 CCTTTTCATG
75152690 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
75152721 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
75152751 TT
1 TT
75152753 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:75152989 original size:24 final size:24
Alignment explanation
Indices: 75152943--75153061 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
75152933 GCTTTATCAT
*
75152943 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
75152968 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
75152992 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
75153015 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
75153039 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75153062 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75153022 original size:47 final size:48
Alignment explanation
Indices: 75152943--75153061 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
75152933 GCTTTATCAT
*
75152943 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
75152992 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
75153039 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75153062 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:75153137 original size:20 final size:20
Alignment explanation
Indices: 75153112--75153171 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
75153102 TATGATTACC
75153112 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
75153132 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
75153152 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
75153172 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:75153246 original size:25 final size:25
Alignment explanation
Indices: 75153214--75153261 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75153204 ATACATAAAC
* * *
75153214 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75153239 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75153262 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75154107 original size:40 final size:39
Alignment explanation
Indices: 75153942--75154125 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75153932 AAATTGAATG
* * *
75153942 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75153982 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75154022 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75154062 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75154101 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75154126 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75154150 original size:80 final size:81
Alignment explanation
Indices: 75153982--75154170 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75153972 GCTGGAAATT
* * * *
75153982 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75154047 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75154063 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75154126 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75154142 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75154171 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75162225 original size:40 final size:39
Alignment explanation
Indices: 75162060--75162243 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75162050 AAATTGAATG
* * *
75162060 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75162100 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75162140 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75162180 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75162219 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75162244 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75162268 original size:80 final size:81
Alignment explanation
Indices: 75162100--75162288 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75162090 GCTGGAAATT
* * * *
75162100 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75162165 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75162181 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75162244 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75162260 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75162289 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75165965 original size:47 final size:46
Alignment explanation
Indices: 75165896--75166165 Score: 237
Period size: 47 Copynumber: 5.8 Consensus size: 46
75165886 GGTAAGGTGC
*
75165896 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATATCTCGAAGT
* * *
75165943 CGATGCCATGTCCTAGACATGGTCATACACT-GACT-ATCATCTCGTAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCAT-ATCTCGAAGT
* * * * * *
75165991 AGATGCATGTCCCAGACATGTCTTACACCAGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCATATCTCGAAGT
* * * *
75166037 CGATGCATGTCCCAAACATGTCTTACACTAGCAC-TCGTCTCGATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCAT-ATCTCGAAGT
* * * *
75166083 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-G-TGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATAT-CTCGAAGT
75166130 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCA
75166166 AAATAACCCA
Statistics
Matches: 185, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
46 75 0.41
47 81 0.44
48 27 0.15
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCATATCTCGAAGT
Found at i:75166141 original size:94 final size:96
Alignment explanation
Indices: 75165896--75166162 Score: 295
Period size: 94 Copynumber: 2.8 Consensus size: 96
75165886 GGTAAGGTGC
* * *
75165896 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATAT-CTCAAGT-CGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATACTCGAGTCCGATG-CATGTCCCAG
*
75165959 ACATGGTCATACACT-G-ACTATCATCTCGTAGT
65 ACAT-GTCTTACACTAGCAC-ATCATCTCGTAGT
* ** * * *
75165991 AGATG-CATGTCCCAGACAT-GTCTTACACCAG--CTTACATCTCGAGGCCGATGCATGTCCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATA-CTCGAGTCCGATGCATGTCCCAG
*
75166052 ACATGTCTTACACTAGCAC-TCGTCTCG-ATGT
65 ACATGTCTTACACTAGCACATCATCTCGTA-GT
* *
75166083 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-GTGTCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATACTCGAGTCCGATGCATGTCCCAGA
75166147 CATGTCTTACACTAGC
66 CATGTCTTACACTAGC
75166163 TCAAAATAAC
Statistics
Matches: 143, Mismatches: 19, Indels: 21
0.78 0.10 0.11
Matches are distributed among these distances:
91 4 0.03
92 22 0.15
93 42 0.29
94 65 0.45
95 5 0.03
96 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATACTCGAGTCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACATCATCTCGTAGT
Found at i:75166154 original size:140 final size:141
Alignment explanation
Indices: 75165894--75166163 Score: 352
Period size: 140 Copynumber: 1.9 Consensus size: 141
75165884 GGGGTAAGGT
* * * *
75165894 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCTAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACATATCTCAAGTCGATGCCATGTCCCAG
*
75165959 ACATGGTCATACACTGACTATCATCTCGTAGTAGATGCATGTCCCAGACATGTCTTACACCAGCT
66 ACATGGTCATACACTGACTATCATATCGTAGTAGATGCATGTCCCAGACATGTCTTACACCAGCT
75166024 TACATCTCGAG
131 TACATCTCGAG
* *
75166035 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCAC-TCGTCTCGATGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACAT-ATCTC-AAGTCGATGCCATGTCCC
* * * * * *
75166097 AGACATGGTCTTACACTGGCTCTTATAAT-GT-GTCCGATGCATGTCCCAGACATGTCTTACACT
64 AGACATGGTCATACACTGACTATCAT-ATCGTAGT-AGATGCATGTCCCAGACATGTCTTACACC
75166160 AGCT
127 AGCT
75166164 CAAAATAACC
Statistics
Matches: 112, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
138 1 0.01
139 19 0.17
140 84 0.75
141 8 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACATATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCATACACTGACTATCATATCGTAGTAGATGCATGTCCCAGACATGTCTTACACCAGCT
TACATCTCGAG
Found at i:75169282 original size:42 final size:41
Alignment explanation
Indices: 75169203--75169295 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 41
75169193 ATTGGGGTTT
* * *
75169203 TCACACGGTCAAGCACACGCTCGTGTCTATGGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGGCTATGGCCCGTGT-CC
75169245 TCACACGGCCAAGGCACACGCCCGTGGGCTA-GG-CCGTGTCC
1 TCACACGGCCAA-GCACACGCCCGT-GGCTATGGCCCGTGTCC
75169286 TCCACACGGC
1 T-CACACGGC
75169296 TGAGACACAC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
41 3 0.07
42 25 0.56
43 13 0.29
44 4 0.09
ACGTcount: A:0.17, C:0.40, G:0.27, T:0.16
Consensus pattern (41 bp):
TCACACGGCCAAGCACACGCCCGTGGCTATGGCCCGTGTCC
Found at i:75170877 original size:2 final size:2
Alignment explanation
Indices: 75170870--75170897 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75170860 CCCATATTAG
75170870 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75170898 GGCATTGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75173221 original size:43 final size:43
Alignment explanation
Indices: 75173153--75173236 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
75173143 TACATGAATC
* *
75173153 ACATCCACCATGAACTCGGACCTCTCAACGAGCTCGGATGCTT
1 ACATCCACAATGAACTCGAACCTCTCAACGAGCTCGGATGCTT
* * *
75173196 ACATCCATAATGAACTCGAATCTCTCAACGAGCTCGTATGC
1 ACATCCACAATGAACTCGAACCTCTCAACGAGCTCGGATGC
75173237 CACATATCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.23
Consensus pattern (43 bp):
ACATCCACAATGAACTCGAACCTCTCAACGAGCTCGGATGCTT
Found at i:75173463 original size:25 final size:23
Alignment explanation
Indices: 75173432--75173488 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 23
75173422 AACAATCGAT
75173432 AAGCATTTAATTCATAATTATAATA
1 AAGCATTTAA-TCAT-ATTATAATA
* *
75173457 AATCATTT-ATCATATTATATTA
1 AAGCATTTAATCATATTATAATA
75173479 AAGCATTTAA
1 AAGCATTTAA
75173489 AACATACTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 15 0.54
23 5 0.18
24 1 0.04
25 7 0.25
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.42
Consensus pattern (23 bp):
AAGCATTTAATCATATTATAATA
Found at i:75177288 original size:39 final size:39
Alignment explanation
Indices: 75177245--75177421 Score: 193
Period size: 39 Copynumber: 4.5 Consensus size: 39
75177235 ACTTTAAATT
* *
75177245 CAGATATATGTC-CAGCACATAGCCTGCGGACCTAAAGTC
1 CAGATATAT-TCTCAGCATATAGCCTGCGGACCTGAAGTC
75177284 CAGATATTATTCTCA-CATATAGCCTGCGGACCTGAAGTC
1 CAGATA-TATTCTCAGCATATAGCCTGCGGACCTGAAGTC
**
75177323 TGGATATAATTCTC-GCATATAGCCTGCGGACCTGAAGTC
1 CAGATAT-ATTCTCAGCATATAGCCTGCGGACCTGAAGTC
* * * *
75177362 CGGATATAATTCTC-GCTTGTAGCCTACGGACCTGAAGTC
1 CAGATAT-ATTCTCAGCATATAGCCTGCGGACCTGAAGTC
*
75177401 CGGATATAATTCTC-GCATATA
1 CAGATAT-ATTCTCAGCATATA
75177422 TATATTTACA
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
38 1 0.01
39 118 0.95
40 5 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (39 bp):
CAGATATATTCTCAGCATATAGCCTGCGGACCTGAAGTC
Found at i:75177345 original size:78 final size:78
Alignment explanation
Indices: 75177263--75177421 Score: 246
Period size: 78 Copynumber: 2.0 Consensus size: 78
75177253 TGTCCAGCAC
* * *
75177263 ATAGCCTGCGGACCTAAAGTCCAGATATTATTCTCACATATAGCCTGCGGACCTGAAGTCTGGAT
1 ATAGCCTGCGGACCTAAAGTCCAGATATAATTCTCACATATAGCCTACGGACCTGAAGTCCGGAT
75177328 ATAATTCTCGCAT
66 ATAATTCTCGCAT
* * * * *
75177341 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTTGTAGCCTACGGACCTGAAGTCCGGAT
1 ATAGCCTGCGGACCTAAAGTCCAGATATAATTCTCACATATAGCCTACGGACCTGAAGTCCGGAT
75177406 ATAATTCTCGCAT
66 ATAATTCTCGCAT
75177419 ATA
1 ATA
75177422 TATATTTACA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (78 bp):
ATAGCCTGCGGACCTAAAGTCCAGATATAATTCTCACATATAGCCTACGGACCTGAAGTCCGGAT
ATAATTCTCGCAT
Found at i:75184038 original size:39 final size:39
Alignment explanation
Indices: 75183925--75184093 Score: 216
Period size: 39 Copynumber: 4.3 Consensus size: 39
75183915 CGACTAGCTG
* *
75183925 AAATGCCTTCGGGAC-AAACCCTGG-TTATAGTAACTCGCAC
1 AAATGCCTTCGGG-CTTAACCC-GGATT-TATTAACTCGCAC
* * *
75183965 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCAC
1 AAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCAC
*
75184005 AAATGCCTTCGGGCTTAACCCAGATTTATTAACTCGCAC
1 AAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCAC
75184044 AAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCAC
1 AAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCAC
* *
75184083 GAACGCCTTCG
1 AAATGCCTTCG
75184094 AATCTTAGTC
Statistics
Matches: 118, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 70 0.59
40 41 0.35
41 7 0.06
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
AAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCAC
Found at i:75188611 original size:39 final size:39
Alignment explanation
Indices: 75188565--75188704 Score: 226
Period size: 39 Copynumber: 3.6 Consensus size: 39
75188555 AGACTAAGAT
*
75188565 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
*
75188604 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * *
75188643 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
75188683 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
75188705 CTATAACCGG
Statistics
Matches: 95, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 73 0.77
40 22 0.23
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:75188699 original size:40 final size:39
Alignment explanation
Indices: 75188565--75188733 Score: 223
Period size: 39 Copynumber: 4.3 Consensus size: 39
75188555 AGACTAAGAT
* *
75188565 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
75188604 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
75188643 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAG-C
* * *
75188683 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGTTAAG-C
75188723 CCGAAGGCATT
1 CCGAAGGCATT
75188734 TGAGCTAGTC
Statistics
Matches: 121, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 73 0.60
40 39 0.32
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
Found at i:75192095 original size:39 final size:38
Alignment explanation
Indices: 75192050--75192160 Score: 152
Period size: 39 Copynumber: 2.8 Consensus size: 38
75192040 ACTTTAAATT
*
75192050 CAGATATATGTC-CAGCACATAGCCTGCGGACCTAAAGTC
1 CAGATATAT-TCTC-GCATATAGCCTGCGGACCTAAAGTC
* *
75192089 CGGATATTATTCTCGCATATAGCCTGCGGACCTGAAGTC
1 CAGATA-TATTCTCGCATATAGCCTGCGGACCTAAAGTC
75192128 CAGATATAATTCTCGCATATAGCCTGCGGACCT
1 CAGATAT-ATTCTCGCATATAGCCTGCGGACCT
75192161 GATGTAACAT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.02
39 60 0.92
40 4 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (38 bp):
CAGATATATTCTCGCATATAGCCTGCGGACCTAAAGTC
Found at i:75192161 original size:39 final size:39
Alignment explanation
Indices: 75192068--75192162 Score: 163
Period size: 39 Copynumber: 2.4 Consensus size: 39
75192058 TGTCCAGCAC
* * *
75192068 ATAGCCTGCGGACCTAAAGTCCGGATATTATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCAT
75192107 ATAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCAT
75192146 ATAGCCTGCGGACCTGA
1 ATAGCCTGCGGACCTGA
75192163 TGTAACATCC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
ATAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCAT
Found at i:75192394 original size:17 final size:19
Alignment explanation
Indices: 75192352--75192395 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
75192342 ATGAAATTTT
*
75192352 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
75192371 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
75192389 AA-TATTA
1 AATTATTA
75192396 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:75194219 original size:28 final size:28
Alignment explanation
Indices: 75194187--75194255 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
75194177 GCGTAGATCA
75194187 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
75194215 CGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
75194243 CGATA-TACCCCTA
1 CGAAATTACCCCTA
75194256 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.42, C:0.28, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:75203015 original size:93 final size:93
Alignment explanation
Indices: 75202882--75203054 Score: 238
Period size: 93 Copynumber: 1.9 Consensus size: 93
75202872 CACCGATAAG
**
75202882 CGAACTCAGACTCAACTCAACAAGCTCGGGCATTCACATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCA
* *
75202947 ATGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCAGATGCCTAGTTACATCTCA
* * * * * * *
75202975 CGAACTCGGACTCAATTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACAAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
75203040 ACGAGTTCAGATGCC
66 ACGAGCTCAGATGCC
75203055 CAAATATCCG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACAAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:75208466 original size:93 final size:93
Alignment explanation
Indices: 75208358--75208622 Score: 433
Period size: 93 Copynumber: 2.8 Consensus size: 93
75208348 GCCCATAAGT
*
75208358 GAACTCGGACTCAACTCAATGA-TCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAATGAGT-TCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
75208422 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ATGAGCTCGGATGCCTAGTTACATCTCAC
* **
75208451 GAACTCGGACTCAACTCAACGAGTTTAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75208516 TGAGCTCGGATGCCTAGTTACATCTCAC
66 TGAGCTCGGATGCCTAGTTACATCTCAC
* *
75208544 GAACTCGGACTCAACTCAATGAGTTCGGATGTTCGCATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
75208609 TGAGTTTGGATGCC
66 TGAGCTCGGATGCC
75208623 CAAATATTCG
Statistics
Matches: 159, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
93 158 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
TGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:75208468 original size:47 final size:47
Alignment explanation
Indices: 75208404--75208574 Score: 190
Period size: 47 Copynumber: 3.7 Consensus size: 47
75208394 ATCCATAAGT
75208404 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
** * * * *
75208451 GAACTCGGACTCAACTCAACGAG-T-TTA-GAC--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
*
75208497 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* *
75208544 GAACTCGGACTCAACTCAATGAGTTCGGATG
1 GAACTCGGACTCAACTCAACGAGCTCGGATG
75208575 TTCGCATCTA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 23 0.23
47 54 0.53
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:75208612 original size:46 final size:45
Alignment explanation
Indices: 75208351--75208620 Score: 235
Period size: 46 Copynumber: 5.8 Consensus size: 45
75208341 GTAACCTGCC
**
75208351 CATAAGTGAACTCGGACTCAACTCAATGA-TCTCGGGCGTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAATGAGT-TCGGATGTTCGCAT
* * **
75208396 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 -CATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATG--T--TCGCAT
* * * ** *
75208446 C-TCA-CGAACTCGGACTCAACTCAACGAGTTTAGACGTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGTTCGCAT
* **
75208489 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 -CATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATG--T--TCGCAT
* *
75208539 C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGATGTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGTTCGCAT
*
75208582 CTATAAGTGAACTCGGACTCAACTCAATGAGTTTGGATG
1 C-ATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATG
75208621 CCCAAATATT
Statistics
Matches: 178, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
43 9 0.05
44 1 0.01
45 6 0.03
46 89 0.50
47 57 0.32
48 6 0.03
49 2 0.01
50 8 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGTTCGCAT
Found at i:75210775 original size:51 final size:51
Alignment explanation
Indices: 75210678--75210775 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
75210668 CACATCCCTA
* * * *
75210678 ATGAATCACATCCACCATGAACTCGAACCTCTTAATGAGCTTGGATGTTAC
1 ATGAATCACATCCACCATAAACTCGAACCTCTCAACGAGCTCGGATGTTAC
* * *
75210729 ATGAATCATATCCACTATAAACTCGAACCTCTCAACGCGCTCGGATG
1 ATGAATCACATCCACCATAAACTCGAACCTCTCAACGAGCTCGGATG
75210776 CTGCATATCT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (51 bp):
ATGAATCACATCCACCATAAACTCGAACCTCTCAACGAGCTCGGATGTTAC
Found at i:75211035 original size:22 final size:22
Alignment explanation
Indices: 75210990--75211035 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
75210980 ATAATTCATA
**
75210990 ATTATAATAAAGAATTTATCAC
1 ATTATAATAAAGAATTTAAAAC
* *
75211012 ATTATATTAAAGCATTTAAAAC
1 ATTATAATAAAGAATTTAAAAC
75211034 AT
1 AT
75211036 ACTACCATAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (22 bp):
ATTATAATAAAGAATTTAAAAC
Found at i:75214210 original size:20 final size:22
Alignment explanation
Indices: 75214166--75214208 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
75214156 CACTAACAAC
75214166 TAATATATAATTATATTTTATT
1 TAATATATAATTATATTTTATT
75214188 TAATATAT-ATT-TATTGTTATT
1 TAATATATAATTATATT-TTATT
75214209 AACCTGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 8 0.40
22 8 0.40
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TAATATATAATTATATTTTATT
Found at i:75225515 original size:17 final size:17
Alignment explanation
Indices: 75225493--75225526 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
75225483 GCTTACTGAA
*
75225493 TCAAATATAATAATAAT
1 TCAAATAAAATAATAAT
*
75225510 TCAAATAAAATATTAAT
1 TCAAATAAAATAATAAT
75225527 GAACAGAGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (17 bp):
TCAAATAAAATAATAAT
Found at i:75225999 original size:45 final size:45
Alignment explanation
Indices: 75225950--75226070 Score: 154
Period size: 45 Copynumber: 2.7 Consensus size: 45
75225940 TCATGATTCT
* *
75225950 ATAACATCTTTTAGCTATGGTCTTACTCATTAGAATCGTGATACC
1 ATAACGTCTTTTAGCTATGGTCTTACTCATTAAAATCGTGATACC
* * * * *
75225995 ATAACGTCTTTCATCTATGGTCTTACTCGTTAAAATTGTGATGCC
1 ATAACGTCTTTTAGCTATGGTCTTACTCATTAAAATCGTGATACC
*
75226040 ATAACGTC-TTTCGACTATGGTCTTACTCATT
1 ATAACGTCTTTTAG-CTATGGTCTTACTCATT
75226071 TTCAGTATGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 2 0.03
45 62 0.97
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.40
Consensus pattern (45 bp):
ATAACGTCTTTTAGCTATGGTCTTACTCATTAAAATCGTGATACC
Found at i:75226082 original size:45 final size:45
Alignment explanation
Indices: 75225950--75226087 Score: 136
Period size: 45 Copynumber: 3.1 Consensus size: 45
75225940 TCATGATTCT
* * * * * *
75225950 ATAACATCTTTTAGCTATGGTCTTACTCATTAGAA-TCGTGATACC
1 ATAACGTCTTTCATCTATGGTCTTACTCATTAAAAGT-ATGATGCC
* * *
75225995 ATAACGTCTTTCATCTATGGTCTTACTCGTTAAAATTGTGATGCC
1 ATAACGTCTTTCATCTATGGTCTTACTCATTAAAAGTATGATGCC
***
75226040 ATAACGTCTTTCGA-CTATGGTCTTACTCATTTTCAGTATGATGCC
1 ATAACGTCTTTC-ATCTATGGTCTTACTCATTAAAAGTATGATGCC
75226085 ATA
1 ATA
75226088 GTTTGTTTCA
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
45 77 0.97
46 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.39
Consensus pattern (45 bp):
ATAACGTCTTTCATCTATGGTCTTACTCATTAAAAGTATGATGCC
Found at i:75228148 original size:257 final size:257
Alignment explanation
Indices: 75227690--75228175 Score: 875
Period size: 257 Copynumber: 1.9 Consensus size: 257
75227680 AGAGTTCCCA
*
75227690 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGATGTTTGGGTCACTTGTGTAAGCTAGTG
1 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTAAGCTAGTG
*
75227755 TAAGACATGTCTCGAACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGCTTGGGACA
66 TAAGACATGTCTCGAACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGCTTGGGACA
*
75227820 TGGCATCGGCATTGAGATGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACA
131 TGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACA
*
75227885 TAAGCCAGTTTGAGACATGTCTAGGACATGCATCAGCTATGAGATGTGTTAGTGTATAACTG
196 TAAGCCAGTGTGAGACATGTCTAGGACATGCATCAGCTATGAGATGTGTTAGTGTATAACTG
*
75227947 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTGAGCTAGTG
1 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTAAGCTAGTG
*
75228012 TAAGACATGTCTGGAACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTT-GGAC
66 TAAGACATGTCTCGAACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG-CTTGGGAC
* *
75228076 ATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT
130 ATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAC
*
75228141 GTAAGCCAGTGTGAGACATGTCTAGGACATGCATC
195 ATAAGCCAGTGTGAGACATGTCTAGGACATGCATC
75228176 GGCCTCGAGA
Statistics
Matches: 219, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
257 216 0.99
258 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (257 bp):
TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTAAGCTAGTG
TAAGACATGTCTCGAACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGCTTGGGACA
TGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACA
TAAGCCAGTGTGAGACATGTCTAGGACATGCATCAGCTATGAGATGTGTTAGTGTATAACTG
Found at i:75228152 original size:46 final size:49
Alignment explanation
Indices: 75228003--75228276 Score: 248
Period size: 46 Copynumber: 5.8 Consensus size: 49
75227993 TCACTTGTGT
* * * *
75228003 GAGCTAGTGTAAGA-CATGTCTGGAACAT-GCATCGGCCAC-ATTATG-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGTA
* * * *
75228049 GAGCCAGTGTAAGACCATGTCTTGGACATGGCATCGGCATTGAGACG-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* *
75228097 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* * **
75228144 -AGCCAGTGTGAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACATA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* ** * *
75228190 -AGCCAGTGTAAGACCATGTCTAGGACATGGCATCAACAC-AGATATGCTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATG-TA
**
75228239 GAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
75228277 ACCTGTACCC
Statistics
Matches: 187, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
46 79 0.42
47 40 0.21
48 32 0.17
49 4 0.02
50 32 0.17
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:75233874 original size:40 final size:39
Alignment explanation
Indices: 75233772--75233911 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 39
75233762 TTTGAATGGT
* * *
75233772 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGC-ATTGTGC-GAGTCACTAA
* * * *
75233813 AACTGGGTTAAGTCCC-AAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTCACTAA
* *
75233852 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTCACTA-A
75233893 A-CCGGGC-AATGTCCCGAAG
1 ATCCGGGCTAA-GTCCCGAAG
75233912 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
39 24 0.30
40 39 0.48
41 18 0.22
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTCACTAA
Found at i:75241560 original size:41 final size:40
Alignment explanation
Indices: 75241503--75241680 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
75241493 CGAATGGTAT
* * *
75241503 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
75241544 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
75241584 -CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
75241623 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
75241663 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
75241681 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 38 0.32
40 54 0.46
41 26 0.22
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Done.