Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 253 of 328
Found at i:75241641 original size:79 final size:80
Alignment explanation
Indices: 75241504--75241652 Score: 210
Period size: 79 Copynumber: 1.9 Consensus size: 80
75241494 GAATGGTATC
* * * *
75241504 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAACCGGGTTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATTG
75241569 TGCGAGTTACCAAAA
66 TGCGAGTTACCAAAA
* * * * *
75241584 CGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTG
1 CGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATTG
75241648 TGCGA
66 TGCGA
75241653 ATCACTATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
79 36 0.60
80 24 0.40
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATTG
TGCGAGTTACCAAAA
Found at i:75248947 original size:30 final size:30
Alignment explanation
Indices: 75248913--75248970 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
75248903 TTTTTAGGCA
* * *
75248913 TAGGGGTAAAATGGTCATTTTATCAAAGTC
1 TAGGGGCAAAATGGTAATTTTACCAAAGTC
75248943 TAGGGGCAAAATGGTAATTTTACCAAAG
1 TAGGGGCAAAATGGTAATTTTACCAAAG
75248971 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTTTACCAAAGTC
Found at i:75249424 original size:47 final size:44
Alignment explanation
Indices: 75249308--75249435 Score: 132
Period size: 47 Copynumber: 2.8 Consensus size: 44
75249298 TCATTTGTGT
* *
75249308 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTAGGA
* * *
75249354 GAGCCAGTATAAGACCATATCTGGGACATGGCATCGG-CATTGAGGCAA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT-AGG--A
*
75249402 GTGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
75249436 ACCTCGAGAC
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
45 4 0.06
46 20 0.29
47 26 0.38
48 18 0.26
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTAGGA
Found at i:75249563 original size:50 final size:49
Alignment explanation
Indices: 75249498--75249631 Score: 169
Period size: 50 Copynumber: 2.7 Consensus size: 49
75249488 AGTTTTGTCA
* *
75249498 GTGTAAGAACCTGTCTGGGACATGGCATCGGCACAACTATGCTATAGCTT
1 GTGTAAG-ACCTGTCTGGGACATGGCATCGGCACAAATATGCTAGAGCTT
* * *
75249548 GTGTAAGACCATGTCTAGGACATGGCATTGGCACAAATATGTTAGAGCTT
1 GTGTAAGACC-TGTCTGGGACATGGCATCGGCACAAATATGCTAGAGCTT
* * *
75249598 GTGTAAGACCTTGTTTGGAACATGGCATCCGCAC
1 GTGTAAGACC-TGTCTGGGACATGGCATCGGCAC
75249632 CTGTACCCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 3 0.04
50 69 0.96
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (49 bp):
GTGTAAGACCTGTCTGGGACATGGCATCGGCACAAATATGCTAGAGCTT
Found at i:75253601 original size:48 final size:47
Alignment explanation
Indices: 75253459--75253618 Score: 150
Period size: 48 Copynumber: 3.4 Consensus size: 47
75253449 GTTATGTGCA
* * * *
75253459 ATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCATCAATATGTA
1 ATCCCATGTAAGACCATATCTAGGACAT-GCATTGGCATCGATATGTG
** * * * **
75253507 ATTTCGTGTAAGACCATAGT-T-GGGC-T--ATTGGCATCGATCTACG
1 ATCCCATGTAAGACCATA-TCTAGGACATGCATTGGCATCGATATGTG
*
75253550 ATCCCATGTAAGACCATATCTAGGACATAGCATTGACATCGATATGTG
1 ATCCCATGTAAGACCATATCTAGGACAT-GCATTGGCATCGATATGTG
75253598 ATCCCATGTAAGACCATATCT
1 ATCCCATGTAAGACCATATCT
75253619 GAGATATGGC
Statistics
Matches: 86, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
42 1 0.01
43 27 0.31
44 3 0.03
45 1 0.01
46 1 0.01
47 3 0.03
48 49 0.57
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (47 bp):
ATCCCATGTAAGACCATATCTAGGACATGCATTGGCATCGATATGTG
Found at i:75264267 original size:49 final size:49
Alignment explanation
Indices: 75264198--75264448 Score: 466
Period size: 49 Copynumber: 5.1 Consensus size: 49
75264188 GTACATAATA
* *
75264198 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
75264247 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
*
75264296 ATATATGTGATAAGGCCTAATGGTCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
*
75264345 ATATATGTGATAAGGCCTAATGGTCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
75264394 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
75264443 ATATAT
1 ATATAT
75264449 ATGTGGTAAA
Statistics
Matches: 198, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 198 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
Found at i:75264572 original size:37 final size:36
Alignment explanation
Indices: 75264517--75264603 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
75264507 AACTTGGAAA
75264517 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
75264555 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
75264592 TATGTCCGGGTA
1 TATGTCCGGGTA
75264604 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:75266200 original size:53 final size:52
Alignment explanation
Indices: 75266032--75266275 Score: 237
Period size: 53 Copynumber: 4.6 Consensus size: 52
75266022 GGTGTTACAG
* * *
75266032 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCA
1 TGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCTAAGGCAAGGATACCA
* * *
75266087 TGTAAGACCATGTCAAGACATGG-ATTGATAAGTTACTATAAGGCAAAGG-TCCCA
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C--TAAGGC-AAGGATACCA
* *
75266141 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCA
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGCAAGGATACCA
* * *
75266194 TGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-T--GACAAGGATACCA
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGCAAGGATACCA
* * * * *
75266243 CGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAG
75266276 GTACCCGTGT
Statistics
Matches: 163, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
49 41 0.25
51 3 0.02
52 6 0.04
53 49 0.30
54 30 0.18
55 34 0.21
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.22
Consensus pattern (52 bp):
TGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGCAAGGATACCA
Found at i:75266488 original size:16 final size:16
Alignment explanation
Indices: 75266467--75266497 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75266457 ATAAATTTGA
75266467 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
75266483 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
75266498 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:75268261 original size:5 final size:5
Alignment explanation
Indices: 75268251--75268306 Score: 94
Period size: 5 Copynumber: 11.2 Consensus size: 5
75268241 GTTATAACTT
* *
75268251 ATATA ATATA ATATA ATATA ATCTA ATATA ATCTA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
75268301 ATATA A
1 ATATA A
75268307 GTGTAGAGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:75273148 original size:47 final size:47
Alignment explanation
Indices: 75273089--75273257 Score: 213
Period size: 47 Copynumber: 3.6 Consensus size: 47
75273079 ATCCATAAGT
*
75273089 GAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
75273136 GAACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
75273182 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
75273229 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
75273258 CATTCGCATC
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 26 0.25
47 54 0.53
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:75273151 original size:93 final size:93
Alignment explanation
Indices: 75273043--75273306 Score: 474
Period size: 93 Copynumber: 2.8 Consensus size: 93
75273033 GCCCCTAAGT
* * * *
75273043 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
75273108 CAAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
75273136 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75273201 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
75273229 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75273294 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75273307 TCAACCATCC
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 164 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:75273303 original size:46 final size:46
Alignment explanation
Indices: 75273038--75273303 Score: 260
Period size: 46 Copynumber: 5.7 Consensus size: 46
75273028 AACCCGCCCC
* * * *
75273038 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
75273084 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
75273132 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
75273177 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
75273225 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
75273270 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75273304 TGCTCAACCA
Statistics
Matches: 178, Mismatches: 24, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 2 0.01
45 4 0.02
46 87 0.49
47 56 0.31
48 4 0.02
49 2 0.01
50 7 0.04
51 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:75275036 original size:43 final size:43
Alignment explanation
Indices: 75274926--75275040 Score: 151
Period size: 43 Copynumber: 2.6 Consensus size: 43
75274916 AAAAATTTGT
*
75274926 GGCGTTTATTGGAAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTTGG--AAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
*
75274971 GGCGTTTGTTGGAAAAATGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTTGGAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
** *
75275014 GGCGCTTT-TTTTACAAACGCCGCTAAA
1 GGCG-TTTGTTGGAAAAACGCCGCTAAA
75275041 TTTGGCAGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
43 49 0.78
44 3 0.05
45 11 0.17
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (43 bp):
GGCGTTTGTTGGAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:75275828 original size:17 final size:17
Alignment explanation
Indices: 75275806--75275848 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
75275796 AAAGAGTTAG
75275806 AAACGAAATATATAATA
1 AAACGAAATATATAATA
75275823 AAACGAAATATATAATA
1 AAACGAAATATATAATA
*
75275840 AAAAGAAAT
1 AAACGAAAT
75275849 GCAACATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (17 bp):
AAACGAAATATATAATA
Found at i:75281136 original size:9 final size:9
Alignment explanation
Indices: 75281122--75281364 Score: 161
Period size: 9 Copynumber: 26.6 Consensus size: 9
75281112 TATTTAAGTA
75281122 TTATGTAAG
1 TTATGTAAG
*
75281131 TTATGTAAT
1 TTATGTAAG
*
75281140 TTATGATATG
1 TTATG-TAAG
* * *
75281150 ATATAT-AT
1 TTATGTAAG
*
75281158 TTATGTAAA
1 TTATGTAAG
*
75281167 TTA--TAAT
1 TTATGTAAG
*
75281174 TTATCTAAG
1 TTATGTAAG
*
75281183 TTATATAAG
1 TTATGTAAG
75281192 TTATGTAAG
1 TTATGTAAG
*
75281201 TTATGTAAA
1 TTATGTAAG
*
75281210 TTATGATATAAAA
1 TTATG---T-AAG
*
75281223 TATATTTAAG
1 T-TATGTAAG
75281233 TATTATGTAAG
1 --TTATGTAAG
75281244 TTATGTAAG
1 TTATGTAAG
* *
75281253 TTATAT-AT
1 TTATGTAAG
*
75281261 TTATCTAAG
1 TTATGTAAG
*
75281270 TTATATAAG
1 TTATGTAAG
*
75281279 TTATATAAG
1 TTATGTAAG
*
75281288 TTATATAAG
1 TTATGTAAG
*
75281297 TTATATAAG
1 TTATGTAAG
*
75281306 TTATGTATG
1 TTATGTAAG
*
75281315 TTATATAAG
1 TTATGTAAG
75281324 TTATGTAAG
1 TTATGTAAG
* *
75281333 TTATATATG
1 TTATGTAAG
*
75281342 TTATATAAG
1 TTATGTAAG
*
75281351 TTATGTAAA
1 TTATGTAAG
75281360 TTATG
1 TTATG
75281365 ATATCAAATA
Statistics
Matches: 189, Mismatches: 33, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
7 6 0.03
8 10 0.05
9 149 0.79
10 7 0.04
11 8 0.04
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:75281177 original size:16 final size:17
Alignment explanation
Indices: 75281151--75281189 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
75281141 TATGATATGA
*
75281151 TATATATTTATGTAAAT
1 TATATATTTATCTAAAT
*
75281168 TATA-ATTTATCTAAGT
1 TATATATTTATCTAAAT
75281184 TATATA
1 TATATA
75281190 AGTTATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (17 bp):
TATATATTTATCTAAAT
Found at i:75281363 original size:18 final size:18
Alignment explanation
Indices: 75281122--75281364 Score: 179
Period size: 18 Copynumber: 13.3 Consensus size: 18
75281112 TATTTAAGTA
* *
75281122 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
75281140 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
75281158 TTATGTAA-AT-TATAAT
1 TTATGTAAGTTATATAAG
*
75281174 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
75281192 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
75281210 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
75281233 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
75281253 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
75281270 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
75281288 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
75281306 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
75281324 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
75281342 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
75281360 TTATG
1 TTATG
75281365 ATATCAAATA
Statistics
Matches: 184, Mismatches: 29, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
15 3 0.02
16 11 0.06
17 18 0.10
18 119 0.65
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.03
25 5 0.03
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:75281489 original size:15 final size:15
Alignment explanation
Indices: 75281469--75281524 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
75281459 AAGTAGCGGG
75281469 ATTAAATAATATTTA
1 ATTAAATAATATTTA
75281484 ATTAAATAATATTT-
1 ATTAAATAATATTTA
75281498 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
75281513 ATTAAATAATAT
1 ATTAAATAATAT
75281525 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:75281764 original size:23 final size:24
Alignment explanation
Indices: 75281701--75281767 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
75281691 ACTTAAATGG
75281701 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
75281725 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
75281749 T-AAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
75281768 CAATAATAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
23 16 0.41
24 23 0.59
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:75283449 original size:21 final size:21
Alignment explanation
Indices: 75283423--75283462 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
75283413 ACACTAATTC
*
75283423 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
75283444 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
75283463 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:75291469 original size:40 final size:39
Alignment explanation
Indices: 75291358--75291508 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
75291348 TTAATCACGT
* * *
75291358 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
75291398 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
75291438 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
75291478 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
75291509 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:75291492 original size:80 final size:79
Alignment explanation
Indices: 75291358--75291508 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
75291348 TTAATCACGT
*
75291358 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
75291423 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
75291438 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
75291501 CCGGATAT
64 CCGGATAT
75291509 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:75292354 original size:17 final size:19
Alignment explanation
Indices: 75292331--75292376 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
75292321 AAGAAGCATG
75292331 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
75292349 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
75292367 AATCATGCTC
1 AATCATGCTC
75292377 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:75299208 original size:40 final size:40
Alignment explanation
Indices: 75299044--75299211 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
75299034 TGGAATTTAA
* * **
75299044 CCGGATATAATGACTCGCTCAGA-TGCCTTCGGGACGAAGC
1 CCGGATATAATGACTTGCACA-ATTGCCTTCGGGACTTAGC
* * * *
75299084 CCGGTTATAGTGACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATGACTTGCACAATTGCCTTCGGGACTTAGC
* ** * * * *
75299124 CCGGATTTGGTAACTTGCACAAATGCCTTCGAGTCTTAGC
1 CCGGATATAATGACTTGCACAATTGCCTTCGGGACTTAGC
* *
75299164 CCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATGACTTGCACAATTGCCTTCGGGACTTAGC
75299204 CCGGATAT
1 CCGGATAT
75299212 CATTCCAATG
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATGACTTGCACAATTGCCTTCGGGACTTAGC
Found at i:75305778 original size:40 final size:40
Alignment explanation
Indices: 75305718--75305902 Score: 316
Period size: 40 Copynumber: 4.6 Consensus size: 40
75305708 CATGCCCAAT
* * *
75305718 TGCCTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
75305758 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
75305798 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
*
75305838 TGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
* *
75305878 TGCCTTCGGGGCTTAGCCCAGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
75305903 CATTCAAATG
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
Found at i:75306693 original size:2 final size:2
Alignment explanation
Indices: 75306688--75306717 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
75306678 ATTCAGCAAC
75306688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75306718 GTCAATGACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75311237 original size:27 final size:27
Alignment explanation
Indices: 75311198--75311271 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
75311188 CAACTTGATG
75311198 AAATGACTGTTATACCCCTACAAGGTA
1 AAATGACTGTTATACCCCTACAAGGTA
* * **
75311225 AAATGACTTTTATACCCTTATGAGGTA
1 AAATGACTGTTATACCCCTACAAGGTA
* *
75311252 AAATGACTGATATATCCCTA
1 AAATGACTGTTATACCCCTA
75311272 TGATATGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (27 bp):
AAATGACTGTTATACCCCTACAAGGTA
Found at i:75311691 original size:33 final size:33
Alignment explanation
Indices: 75311649--75311711 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
75311639 ATCGTGATTT
75311649 CCATTGTATGATTGACTGTTTGTTTAATAATTG
1 CCATTGTATGATTGACTGTTTGTTTAATAATTG
75311682 CCATTGTATGATTGACTGTTTGTTTAATAA
1 CCATTGTATGATTGACTGTTTGTTTAATAA
75311712 GGGATTACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.48
Consensus pattern (33 bp):
CCATTGTATGATTGACTGTTTGTTTAATAATTG
Found at i:75316215 original size:31 final size:31
Alignment explanation
Indices: 75316174--75316237 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
75316164 CCTTTTCATA
*
75316174 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
75316205 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
75316236 TT
1 TT
75316238 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:75316508 original size:47 final size:47
Alignment explanation
Indices: 75316429--75316594 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
75316419 GCTTTATCAT
* *
75316429 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTG
*
75316477 AATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
1 -ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTG
*
75316524 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTG
75316572 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75316595 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
46 23 0.21
47 40 0.36
48 35 0.32
49 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTG
Found at i:75316594 original size:24 final size:24
Alignment explanation
Indices: 75316429--75316594 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
75316419 GCTTTATCAT
* *
75316429 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
75316454 ATAACTGGGGCAAAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
75316477 AATAACTGGGGCATAAGCCCTTTT-
1 -ATAACTGGGGCATAAGCCCTTTTG
75316501 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
75316524 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
75316548 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
75316572 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75316595 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
23 49 0.37
24 69 0.52
25 15 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:75316669 original size:20 final size:20
Alignment explanation
Indices: 75316644--75316704 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
75316634 TTATGATTAC
75316644 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75316664 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
75316684 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
75316704 A
1 A
75316705 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75316779 original size:25 final size:25
Alignment explanation
Indices: 75316747--75316794 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75316737 ATACATAAAC
* * *
75316747 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75316772 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75316795 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75318054 original size:27 final size:27
Alignment explanation
Indices: 75318034--75318266 Score: 281
Period size: 27 Copynumber: 8.6 Consensus size: 27
75318024 AGGGTATTTT
*
75318034 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
75318061 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
75318088 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
75318115 GGAAATACTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
75318142 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
75318169 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
75318196 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
75318223 GGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
75318250 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
75318267 GGAGTACTTT
Statistics
Matches: 184, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 182 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:75318128 original size:81 final size:81
Alignment explanation
Indices: 75318042--75318266 Score: 310
Period size: 81 Copynumber: 2.8 Consensus size: 81
75318032 TTAGTAATTT
* * * *
75318042 TGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAG
1 TGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
**
75318107 GGTAAAATGGAAATAC
66 GGTAAAACAGAAATAC
* *
75318123 TGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAG
1 TGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
* *
75318188 GGTAAAACAGTAATTC
66 GGTAAAACAGAAATAC
* *
75318204 TATAAA-CTGAGGGTAAAACGGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 TGTAAATC-GAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTATAAATCG
75318267 GGAGTACTTT
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
80 2 0.02
81 126 0.98
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.26
Consensus pattern (81 bp):
TGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
GGTAAAACAGAAATAC
Found at i:75318297 original size:54 final size:54
Alignment explanation
Indices: 75318035--75318297 Score: 271
Period size: 54 Copynumber: 4.9 Consensus size: 54
75318025 GGGTATTTTA
* * * * ** * *
75318035 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
* * ** **
75318089 GTAATTCTATAAATCGAGGGTAAAATGGAAATACTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
*
75318143 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
* *
75318197 GTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTACAAATC-GAGGGTAAAACG
* **** *
75318251 GTAATTCTGTAAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 GTAATTCTATAAATCGAGG-GTAAAACGGTAATTTTACAAATCGAGGG
75318298 CATTTCAGTA
Statistics
Matches: 178, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
53 4 0.02
54 172 0.97
55 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
Found at i:75318297 original size:81 final size:79
Alignment explanation
Indices: 75318035--75318297 Score: 280
Period size: 81 Copynumber: 3.2 Consensus size: 79
75318025 GGGTATTTTA
* * * *
75318035 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAA-TTT-TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
75318100 AATCGAGGGTAAAATG
64 AATCGAGGGTAAAATG
* * * *
75318116 GAAATACTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACA
1 GTAAT--TTTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
**
75318181 AATCGAGGGTAAAACA
64 AATCGAGGGTAAAATG
*
75318197 GTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTG
1 GTAATT-T-TAAATC-GAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTA
***
75318260 TAAATCG-GGAGTACTTTG
62 TAAATCGAGG-GTAAAATG
75318278 GTAATTTTACAAGTCGAGGG
1 GTAATTTTA-AA-TCGAGGG
75318298 CATTTCAGTA
Statistics
Matches: 152, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
79 3 0.02
80 8 0.05
81 139 0.91
82 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (79 bp):
GTAATTTTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAA
TCGAGGGTAAAATG
Found at i:75323120 original size:39 final size:39
Alignment explanation
Indices: 75323054--75323140 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
75323044 CACGATATTT
*
75323054 GAAACATATCCGGACAAAAGGTCCGCAGGCTACGTGCTG
1 GAAACATATCCGGACAAAAGGTCCGCAGGCTACGTGCTA
*** *
75323093 GAAACATATCCGGACCTGAGGTTCGCAGGCTACGTGCTA
1 GAAACATATCCGGACAAAAGGTCCGCAGGCTACGTGCTA
*
75323132 GAAATATAT
1 GAAACATAT
75323141 TTGGGCCTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (39 bp):
GAAACATATCCGGACAAAAGGTCCGCAGGCTACGTGCTA
Found at i:75326260 original size:28 final size:28
Alignment explanation
Indices: 75326204--75326260 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
75326194 CATCATAACT
* *
75326204 TATAATAGTTTAATATATATAAGTTATA
1 TATAATAGTTTAATAAATATAAATTATA
75326232 TATAAT-GTTTAATAAA-ATTAAATTA-A
1 TATAATAGTTTAATAAATA-TAAATTATA
75326258 TAT
1 TAT
75326261 GTATTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 5 0.19
27 15 0.58
28 6 0.23
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (28 bp):
TATAATAGTTTAATAAATATAAATTATA
Found at i:75327052 original size:44 final size:43
Alignment explanation
Indices: 75326989--75327077 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 43
75326979 TTGTTGTAAT
75326989 TTGATTTAATGCATATGGTAAGTGTTTGAGGTGAGTATTTGACA
1 TTGATTTAATGCATATGGTAAGTGTTTGAGG-GAGTATTTGACA
*
75327033 TTGATTTAATGCATATGGTAATTGTTTGAGGGAGTATTTGACA
1 TTGATTTAATGCATATGGTAAGTGTTTGAGGGAGTATTTGACA
75327076 TT
1 TT
75327078 TTTATACTTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 14 0.32
44 30 0.68
ACGTcount: A:0.27, C:0.04, G:0.26, T:0.43
Consensus pattern (43 bp):
TTGATTTAATGCATATGGTAAGTGTTTGAGGGAGTATTTGACA
Found at i:75333711 original size:12 final size:12
Alignment explanation
Indices: 75333689--75333719 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
75333679 TAGAATTTAC
75333689 TAAAA-TAAAAA
1 TAAAAGTAAAAA
75333700 TAAAAGTAAAAA
1 TAAAAGTAAAAA
75333712 TAAAAGTA
1 TAAAAGTA
75333720 GTTTTAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (12 bp):
TAAAAGTAAAAA
Found at i:75343557 original size:23 final size:24
Alignment explanation
Indices: 75343531--75343578 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
75343521 ACTTCATACC
* *
75343531 CATGATTTTACCATGCTAAT-TCT
1 CATGATATTACCATGCCAATATCT
*
75343554 CATGATATTCCCATGCCAATATCT
1 CATGATATTACCATGCCAATATCT
75343578 C
1 C
75343579 TAATGTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (24 bp):
CATGATATTACCATGCCAATATCT
Found at i:75346841 original size:20 final size:19
Alignment explanation
Indices: 75346796--75346833 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
75346786 GAGCGAAAGG
75346796 AACGAG-AAACGGGCCAAA
1 AACGAGAAAACGGGCCAAA
*
75346814 AACAGAGAAAATGGGCCAAA
1 AAC-GAGAAAACGGGCCAAA
75346834 GTACGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 3 0.18
20 11 0.65
ACGTcount: A:0.53, C:0.18, G:0.26, T:0.03
Consensus pattern (19 bp):
AACGAGAAAACGGGCCAAA
Found at i:75352916 original size:112 final size:112
Alignment explanation
Indices: 75352773--75352993 Score: 415
Period size: 112 Copynumber: 2.0 Consensus size: 112
75352763 GGGCGTGCGA
75352773 CACGCCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTGTGGACTTTCATACAC
1 CACGCCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTGTGGACTTTCATACAC
*
75352838 AGGTGTGGCAGAAGTGAACAAAGACAGACACGGTCGTGCGACACGGC
66 AGGTGTGGCAGAAGTGAACAAAGACAAACACGGTCGTGCGACACGGC
*
75352885 CACGCCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTTTGGACTTTCATACAC
1 CACGCCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTGTGGACTTTCATACAC
*
75352950 AGGTGTGGCAGAAGTGAACAAAGACAAACACGGTCGTGTGACAC
66 AGGTGTGGCAGAAGTGAACAAAGACAAACACGGTCGTGCGACAC
75352994 AGCCGTGTGC
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 106 1.00
ACGTcount: A:0.31, C:0.27, G:0.27, T:0.14
Consensus pattern (112 bp):
CACGCCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTGTGGACTTTCATACAC
AGGTGTGGCAGAAGTGAACAAAGACAAACACGGTCGTGCGACACGGC
Found at i:75355985 original size:40 final size:40
Alignment explanation
Indices: 75355892--75356100 Score: 194
Period size: 40 Copynumber: 5.2 Consensus size: 40
75355882 TATTCGAATG
* * * *
75355892 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
75355933 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
** *
75355973 ATATCCGGACTAAGAT-CCGAATTCATTTGTGTGAGTTACT
1 ATATCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
* *
75356013 AAATCC-GAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGA-CTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * * *
75356053 ATAACTAGG-CTATGTCCCAAAGGCATTTGAGCGTG-TAGCT
1 ATATC-CGGACTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
75356093 ATATCCGG
1 ATATCCGG
75356101 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
39 7 0.05
40 103 0.74
41 28 0.20
42 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (40 bp):
ATATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:75363945 original size:40 final size:39
Alignment explanation
Indices: 75363852--75364059 Score: 256
Period size: 40 Copynumber: 5.2 Consensus size: 39
75363842 TATTCGAATG
* * *
75363852 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACT
*
75363893 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT
*
75363933 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT
* *
75363973 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
* * **
75364013 ATAACCGGGCTATGTCCGAAGGCATTTGAACGAG-TAGCT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTA-CT
75364052 ATATCCGG
1 ATATCCGG
75364060 TTAAATTCCG
Statistics
Matches: 150, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 27 0.18
40 92 0.61
41 28 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
Found at i:75370369 original size:39 final size:39
Alignment explanation
Indices: 75370189--75370394 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
75370179 TATTCGAATG
* * *
75370189 ATAT-CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACT
*
75370229 ATATCC-GACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT
*
75370268 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT
* *
75370308 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
* *
75370348 ATA-CCGGGCTATGTCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTA-CT
75370387 ATATCCGG
1 ATATCCGG
75370395 TTAAATTCCG
Statistics
Matches: 148, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
38 4 0.03
39 43 0.29
40 99 0.67
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
Found at i:75376721 original size:40 final size:39
Alignment explanation
Indices: 75376556--75376739 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75376546 AAATTGAATG
* * *
75376556 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75376596 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75376636 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75376676 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75376715 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75376740 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75376764 original size:80 final size:81
Alignment explanation
Indices: 75376596--75376784 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75376586 GCTGGAAATT
* * * *
75376596 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75376661 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75376677 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75376740 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75376756 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75376785 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75381179 original size:64 final size:64
Alignment explanation
Indices: 75381099--75381281 Score: 192
Period size: 64 Copynumber: 2.8 Consensus size: 64
75381089 AGACATTATG
* * * * *
75381099 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * *
75381163 ATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAAGGACACATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTA-CAC-CATGTAGACAAGAGAGCTACGAGATA
75381228 A
64 A
* *
75381229 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
75381282 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 9
0.77 0.15 0.07
Matches are distributed among these distances:
62 1 0.01
63 15 0.16
64 29 0.30
65 24 0.25
66 25 0.26
67 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75382375 original size:2 final size:2
Alignment explanation
Indices: 75382368--75382394 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
75382358 TCATGACATG
75382368 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
75382395 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75384473 original size:20 final size:20
Alignment explanation
Indices: 75384448--75384486 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
75384438 TACCACAAAG
75384448 CCAAGCTACACGGGCGTGTC
1 CCAAGCTACACGGGCGTGTC
75384468 CCAAGCTACACGGGCGTGT
1 CCAAGCTACACGGGCGTGT
75384487 GACCCCTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.15
Consensus pattern (20 bp):
CCAAGCTACACGGGCGTGTC
Found at i:75386914 original size:40 final size:40
Alignment explanation
Indices: 75386859--75386971 Score: 172
Period size: 40 Copynumber: 2.8 Consensus size: 40
75386849 TGGAAAAAAA
*
75386859 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGTGAGTTAT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGTGAGTTAT
* * *
75386899 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTCT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGTGAGTTAT
* *
75386939 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGT
1 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGT
75386972 TGGTTGTTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCAAAGGCATTCGTGTGAGTTAT
Found at i:75389911 original size:68 final size:68
Alignment explanation
Indices: 75389802--75389937 Score: 245
Period size: 68 Copynumber: 2.0 Consensus size: 68
75389792 TGACATTTTG
*
75389802 GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTTCGCTAGATCATTTCATTTGA
1 GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTAGATCATTTCATTTGA
75389867 GAT
66 GAT
* *
75389870 GAGAATGCTGGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTATATCATTTCATTTGA
1 GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTAGATCATTTCATTTGA
75389935 GAT
66 GAT
75389938 TTTCCTGAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (68 bp):
GAGAATGCTAGAATAAAACTAATGAAGCTTGTTACAAATGTGGTCCGCTAGATCATTTCATTTGA
GAT
Found at i:75391299 original size:28 final size:28
Alignment explanation
Indices: 75391257--75391326 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
75391247 GAAAAGCCGG
* *
75391257 AAGTGATTGGGCCTGATGGGCCATAT-A
1 AAGTGATTGGGCCTGACGGACCATATGA
75391284 AATGTGATTGGGCCTGACGGACCATATGA
1 AA-GTGATTGGGCCTGACGGACCATATGA
*
75391313 AAGTGTTTGGGCCT
1 AAGTGATTGGGCCT
75391327 AAAGGAGCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 33 0.87
29 3 0.08
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (28 bp):
AAGTGATTGGGCCTGACGGACCATATGA
Found at i:75392928 original size:58 final size:58
Alignment explanation
Indices: 75392838--75392954 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
75392828 TTTATTATTA
75392838 AGCTTGTTTAATTTGATATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
1 AGCTTGTTTAATTTGATATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
75392896 AGCTTGTTTAATTTGATATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
1 AGCTTGTTTAATTTGATATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
75392954 A
1 A
75392955 AGGCTTTTAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (58 bp):
AGCTTGTTTAATTTGATATACTGTAGATAGTTAGTGGGCTATTTTAGATGATTATACT
Found at i:75394739 original size:30 final size:29
Alignment explanation
Indices: 75394696--75394759 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
75394686 CAAGTAACTG
75394696 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
75394725 AAGCTAGTTTAAATCGTACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
75394755 AAGCT
1 AAGCT
75394760 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:75395048 original size:8 final size:8
Alignment explanation
Indices: 75395035--75395059 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75395025 AAACTAGCCC
75395035 TCACATTT
1 TCACATTT
75395043 TCACATTT
1 TCACATTT
75395051 TCACATTT
1 TCACATTT
75395059 T
1 T
75395060 AGTCCCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:75397549 original size:24 final size:24
Alignment explanation
Indices: 75397517--75397603 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
75397507 AATCTCAAAT
75397517 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
75397541 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
75397565 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
75397589 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
75397604 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:75397569 original size:48 final size:48
Alignment explanation
Indices: 75397517--75397625 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
75397507 AATCTCAAAT
** *
75397517 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
75397565 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
75397613 GCACTATGTGTGC
1 GCACTATGTGTGC
75397626 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:75397616 original size:24 final size:24
Alignment explanation
Indices: 75397517--75397625 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
75397507 AATCTCAAAT
*
75397517 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
75397541 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
75397565 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
75397589 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
75397613 GCACTATGTGTGC
1 GCACTATGTGTGC
75397626 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:75405417 original size:24 final size:24
Alignment explanation
Indices: 75405385--75405471 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
75405375 AATCTCAAAT
75405385 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
75405409 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
75405433 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
75405457 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
75405472 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:75405437 original size:48 final size:48
Alignment explanation
Indices: 75405385--75405493 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
75405375 AATCTCAAAT
** *
75405385 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
75405433 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
75405481 GCACTATGTGTGC
1 GCACTATGTGTGC
75405494 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:75405484 original size:24 final size:24
Alignment explanation
Indices: 75405385--75405493 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
75405375 AATCTCAAAT
*
75405385 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
75405409 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
75405433 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
75405457 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
75405481 GCACTATGTGTGC
1 GCACTATGTGTGC
75405494 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:75412438 original size:16 final size:16
Alignment explanation
Indices: 75412417--75412451 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75412407 TCGGCAAATC
*
75412417 CCGAAATACTGAAAAG
1 CCGAAATACCGAAAAG
*
75412433 CCGAAATGCCGAAAAG
1 CCGAAATACCGAAAAG
75412449 CCG
1 CCG
75412452 GAAGTTTGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.26, G:0.23, T:0.09
Consensus pattern (16 bp):
CCGAAATACCGAAAAG
Found at i:75412701 original size:28 final size:28
Alignment explanation
Indices: 75412668--75412786 Score: 166
Period size: 28 Copynumber: 4.2 Consensus size: 28
75412658 ATTGCATGAC
*
75412668 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
75412696 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
75412724 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * * *
75412752 TATGAATGAGATTAGGCCTAAAGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
75412780 AATGAAT
1 TATGAAT
75412787 AAGTACGGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:75417227 original size:453 final size:453
Alignment explanation
Indices: 75416377--75417275 Score: 1494
Period size: 453 Copynumber: 2.0 Consensus size: 453
75416367 ATTTGTTTCA
* ** * *
75416377 AAATGTTTGATTTGTCAGGAAGTCAAAGCTGTGCATCAAGTGCCGTCAAGTTTATTACAGCCGAT
1 AAATGTTTGATTTGTCAGCAAGTCAAAGCTAAGCATCAAATACCGTCAAGTTTATTACAGCCGAT
* *
75416442 TATGATTCCTGAGTGGAAGTGGGATAGAGTAATAATGGATTTCGTATTAGGTTAGCCCTTATCTC
66 TATGATTCCTAAGTAGAAGTGGGATAGAGTAATAATGGATTTCGTATTAGGTTAGCCCTTATCTC
* *
75416507 TGAAAAAGAAAGATGCGATCTGGGTTGTTGTTGACAGATTGACGAAATCAGCTCATTTCATTTTG
131 CGAAAAAGAAAGATGCGATCTAGGTTGTTGTTGACAGATTGACGAAATCAGCTCATTTCATTTTG
*
75416572 GTACGTATGGATTTCTCGCTAGATAAATTAGGTATATTTCTGAAATTGTAAGATTACATGGTGTT
196 GTACGTATAGATTTCTCGCTAGATAAATTAGGTATATTTCTGAAATTGTAAGATTACATGGTGTT
** * *
75416637 CCCCTATCTATTATTTTGGATAAAGACCGAAGATTTACTTCGAGATTTTATAAGATATTGCAAGA
261 CCCCTATCTATTATTTCAGATAAAGACCCAAGATTTACTTCGAGATTTTAGAAGATATTGCAAGA
*
75416702 AGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTACATTTCACCCGTAAACGAATGGTCAATCCGA
326 AGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTACATTTCACCCGCAAACGAATGGTCAATCCGA
75416767 ACAAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTCTTGAGTTTGAAGTGTTTTG
391 ACAAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTCTTGAGTTTGAAGTGTTTTG
* * * * *
75416830 AAATGTTTGATTTGTTAGCAAGTCAAAGCTAAGCATCAAATATCGTCAGGTTTATTATAGCCTAT
1 AAATGTTTGATTTGTCAGCAAGTCAAAGCTAAGCATCAAATACCGTCAAGTTTATTACAGCCGAT
* *
75416895 TATGATTCCTAAGTAGAAGTGGGATAGAGTAATAATGGATTTTGTATTAGGTTTGCCCTTATCTC
66 TATGATTCCTAAGTAGAAGTGGGATAGAGTAATAATGGATTTCGTATTAGGTTAGCCCTTATCTC
* *
75416960 CGAAAAAGAAAGATGTGATCTAGGTTGTTGTTGGCAGATTGACGAAATCAGCTCATTTCATTTTG
131 CGAAAAAGAAAGATGCGATCTAGGTTGTTGTTGACAGATTGACGAAATCAGCTCATTTCATTTTG
*
75417025 GTACGTATAGATTTCTCGCTAGATAAATTAGGTATATTTCTGAAATTGTGAGATTACATGGTGTT
196 GTACGTATAGATTTCTCGCTAGATAAATTAGGTATATTTCTGAAATTGTAAGATTACATGGTGTT
* * *
75417090 CCCCTATCTATTGTTTCAGATAGAGACCCAAGATTTACTTCGAGATTTTGGAAGATATTGCAAGA
261 CCCCTATCTATTATTTCAGATAAAGACCCAAGATTTACTTCGAGATTTTAGAAGATATTGCAAGA
** *
75417155 AGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTGTATTTCACCCGCAAACGGATGGTCAATCC-A
326 AGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTACATTTCACCCGCAAACGAATGGTCAATCCGA
*
75417219 ATCAAGTTATTTAGATACTTGAGGATATGTTGCGTTGTTGCATTCTTGAGTTTGAAG
391 A-CAAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTCTTGAGTTTGAAG
75417276 GTAGCTGGGA
Statistics
Matches: 413, Mismatches: 32, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
452 2 0.00
453 411 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (453 bp):
AAATGTTTGATTTGTCAGCAAGTCAAAGCTAAGCATCAAATACCGTCAAGTTTATTACAGCCGAT
TATGATTCCTAAGTAGAAGTGGGATAGAGTAATAATGGATTTCGTATTAGGTTAGCCCTTATCTC
CGAAAAAGAAAGATGCGATCTAGGTTGTTGTTGACAGATTGACGAAATCAGCTCATTTCATTTTG
GTACGTATAGATTTCTCGCTAGATAAATTAGGTATATTTCTGAAATTGTAAGATTACATGGTGTT
CCCCTATCTATTATTTCAGATAAAGACCCAAGATTTACTTCGAGATTTTAGAAGATATTGCAAGA
AGCTTTGGGTTCAAAGCTGCATTTTTTAGCACTACATTTCACCCGCAAACGAATGGTCAATCCGA
ACAAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTCTTGAGTTTGAAGTGTTTTG
Found at i:75421656 original size:50 final size:50
Alignment explanation
Indices: 75421540--75421826 Score: 229
Period size: 50 Copynumber: 5.7 Consensus size: 50
75421530 TGTGATAACA
* ** * * *
75421540 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTGTATGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG-T-TAGGTCG
* * * *
75421592 CGTGTATAGTACTAAGTGCAGGCTACTATGTTTACAAGATAGTTAGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGTCG
* * ** * * * *
75421642 CATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGACAACTTCA-ATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGA-TAGTT-AGGTCG
* * ** * *
75421693 CGTGTGTAGTACTAAATGCAGGCTACTACATGTATC-AGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAAGATAGTTAGGTCG
* * * * *
75421743 CGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGTCG
* *
75421792 CATGTGTAGTACTAAGTGTAGGCTACTATGCGTAC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
75421827 CTGATAGATT
Statistics
Matches: 187, Mismatches: 43, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
49 36 0.19
50 79 0.42
51 35 0.19
52 37 0.20
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGTCG
Found at i:75421778 original size:101 final size:101
Alignment explanation
Indices: 75421589--75421778 Score: 249
Period size: 101 Copynumber: 1.9 Consensus size: 101
75421579 TGGTTGTATG
* * ** *
75421589 TCACGTGTATAGTACTAAGTGCAGGCTACTATGTTTACAAGATAGTTAGGTTGCATGTGTAGTAC
1 TCACGTGTATAGTACTAAATGCAGGCTACTATGTATACAAGATAGTTAGGTCACATATGTAGTAC
*
75421654 TAAGTGCAAGCTACTATGCGTACCCGACAACTTCAA
66 TAAGTGCAAGCTACTACGCGTACCCGACAACTTCAA
* * *
75421690 TCACGTGTGTAGTACTAAATGCAGGCTACTACATGTAT-C-AGATGGTTAGGTCACGTATGTAGT
1 TCACGTGTATAGTACTAAATGCAGGCTACT--ATGTATACAAGATAGTTAGGTCACATATGTAGT
* *
75421753 ACTAAGTGCAGGCTACTACGTGTACC
64 ACTAAGTGCAAGCTACTACGCGTACC
75421779 AGATTGTTGG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
101 70 0.92
102 1 0.01
103 5 0.07
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (101 bp):
TCACGTGTATAGTACTAAATGCAGGCTACTATGTATACAAGATAGTTAGGTCACATATGTAGTAC
TAAGTGCAAGCTACTACGCGTACCCGACAACTTCAA
Found at i:75422052 original size:16 final size:15
Alignment explanation
Indices: 75422031--75422060 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75422021 GAATGGAGTA
75422031 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
75422047 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
75422061 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:75428194 original size:42 final size:43
Alignment explanation
Indices: 75428094--75428257 Score: 181
Period size: 43 Copynumber: 3.8 Consensus size: 43
75428084 AAAGGCCAAC
* * *
75428094 GTCCTAGACGAGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACGTGGTCTTACATGAAATCAAATATCGATGCCACT
* * *
75428137 GTCCTAGACGGGGTCTTACATGAAATCAAATA-CGATGCCGCT
1 GTCCCAGACGTGGTCTTACATGAAATCAAATATCGATGCCACT
* *
75428179 GTCCCAGACATGGTCTTACATGTAAATCATAA-ATTGATGCCAAC-
1 GTCCCAGACGTGGTCTTACATG-AAATCA-AATATCGATGCC-ACT
* * *
75428223 GTCCCAGACGTGGTCTTACACGAAAACACATATCG
1 GTCCCAGACGTGGTCTTACATGAAATCAAATATCG
75428258 GATCCTATGT
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 29 0.28
43 45 0.44
44 28 0.27
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACATGAAATCAAATATCGATGCCACT
Found at i:75429920 original size:21 final size:20
Alignment explanation
Indices: 75429891--75429930 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
75429881 CTTTGAAACA
*
75429891 AGGCACATGCCCGTGTGGAT
1 AGGCACATGCCCGAGTGGAT
75429911 AGGCAACATGCCCGAGTGGA
1 AGGC-ACATGCCCGAGTGGA
75429931 ACTTGAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (20 bp):
AGGCACATGCCCGAGTGGAT
Found at i:75431480 original size:40 final size:40
Alignment explanation
Indices: 75431426--75431627 Score: 309
Period size: 40 Copynumber: 5.0 Consensus size: 40
75431416 GGATTTAGCT
*
75431426 GGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
75431466 GGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
75431506 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
75431546 GGATATAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
75431586 GGA-ATTAGTCACTAGCACAAATGCCTTCGGTACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
75431626 GG
1 GG
75431628 TTATCATCCG
Statistics
Matches: 150, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 148 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:75440717 original size:42 final size:43
Alignment explanation
Indices: 75440613--75440736 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 43
75440603 AAAGCTCGTA
* *** *
75440613 CAATGCCAATGTCCTAGACGTGGTCTTACATGTAACCAAATAT
1 CAATGCCAATGTCCTAGACATGGTCTTACACAAAATCAAATAT
* *
75440656 CAATGCCACTGT-CTCAGACAAGGTCTTACACAAAATCAAATA-
1 CAATGCCAATGTCCT-AGACATGGTCTTACACAAAATCAAATAT
*
75440698 CGATGCCAATGTCCTAGACATGGTCTTACACATAAATCA
1 CAATGCCAATGTCCTAGACATGGTCTTACACA-AAATCA
75440737 TAAATTGATG
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.41
43 40 0.59
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
CAATGCCAATGTCCTAGACATGGTCTTACACAAAATCAAATAT
Found at i:75442748 original size:79 final size:82
Alignment explanation
Indices: 75442608--75442792 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
75442598 TCGAATGATG
* * * *
75442608 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
75442672 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
75442688 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
75442750 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
75442768 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75442793 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:75442749 original size:40 final size:40
Alignment explanation
Indices: 75442608--75442792 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
75442598 TCGAATGATG
* *
75442608 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * *
75442648 TCTGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
75442688 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
75442727 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
75442768 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75442793 AGCGAGTCGT
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 33 0.28
40 75 0.64
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:75460437 original size:37 final size:37
Alignment explanation
Indices: 75460387--75460514 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
75460377 TTATTACGAA
75460387 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
75460424 GTCTTACCCGGACATAATCTCCACACGTAGTCGTCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
75460461 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
75460498 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
75460515 TTTCCAAGTT
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
37 81 0.94
38 5 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:75460612 original size:48 final size:48
Alignment explanation
Indices: 75460554--75460657 Score: 190
Period size: 48 Copynumber: 2.2 Consensus size: 48
75460544 TGTTACAACA
75460554 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
* *
75460602 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
75460650 TTCACATT
1 TTCACATT
75460658 CATCATGTGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:75462377 original size:124 final size:122
Alignment explanation
Indices: 75462157--75462378 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
75462147 GAATTATGTG
* * * *
75462157 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
75462222 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
75462279 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
75462343 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
75462379 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:75462422 original size:40 final size:40
Alignment explanation
Indices: 75462337--75462487 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
75462327 AATTGAATGA
* * * *
75462337 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
75462377 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
75462418 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
75462457 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
75462488 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:75462501 original size:40 final size:40
Alignment explanation
Indices: 75462374--75462503 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
75462364 ATGCTGGAAA
* * *
75462374 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
75462414 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
75462454 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
75462494 TTATATCCGG
1 TTATATCCGG
75462504 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:75462502 original size:80 final size:80
Alignment explanation
Indices: 75462336--75462503 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
75462326 AAATTGAATG
* *
75462336 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
75462401 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
75462416 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
75462479 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
75462496 ATATCCGG
1 ATATCCGG
75462504 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:75463934 original size:49 final size:49
Alignment explanation
Indices: 75463868--75464192 Score: 541
Period size: 49 Copynumber: 6.7 Consensus size: 49
75463858 GGGTGTTACA
* *
75463868 CATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
* * *
75463917 CATTACATCGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
*
75463964 CATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
*
75464013 CATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
*
75464060 CATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
75464109 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
*
75464158 CATCACATTGGCCATTAGGCCGTATCACATATATA
1 CATCACATTGGCCATTAGGCCTTATCACATATATA
75464193 CATCTCATAC
Statistics
Matches: 259, Mismatches: 13, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
47 88 0.34
49 171 0.66
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (49 bp):
CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
Found at i:75464032 original size:96 final size:96
Alignment explanation
Indices: 75463868--75464192 Score: 560
Period size: 96 Copynumber: 3.4 Consensus size: 96
75463858 GGGTGTTACA
* * * *
75463868 CATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATTACATCGGCCATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
75463933 AGGCCTTATCACATATATACTCTTTCACATT
66 AGGCCTTATCACATATATACTCTTTCACATT
*
75463964 CATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
75464029 AGGCCTTATCACATATATACTCTTTCACATT
66 AGGCCTTATCACATATATACTCTTTCACATT
*
75464060 CATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATT
1 CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
*
75464125 AGGCCTTATCACATATATATACACTTTCACATT
66 AGGCCTTATCAC--ATATATACTCTTTCACATT
*
75464158 CATCACATTGGCCATTAGGCCGTATCACATATATA
1 CATCACATTGGCCATTAGGCCTTATCACATATATA
75464193 CATCTCATAC
Statistics
Matches: 219, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 168 0.77
98 51 0.23
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (96 bp):
CATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
AGGCCTTATCACATATATACTCTTTCACATT
Found at i:75464131 original size:145 final size:143
Alignment explanation
Indices: 75463868--75464194 Score: 546
Period size: 145 Copynumber: 2.3 Consensus size: 143
75463858 GGGTGTTACA
* *
75463868 CATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATTACATCGGCCATT
1 CATCACATTGGCCATTAGGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATT
* *
75463933 AGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTAT
64 AGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
75463998 ATACACTTTCACATT
129 ATACACTTTCACATT
* * *
75464013 CATCACATTGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAG
1 CATCACATTGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAG
75464078 GCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
66 GCCTTATCACA--TATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAT
75464143 ATACACTTTCACATT
129 ATACACTTTCACATT
*
75464158 CATCACATTGGCCATTAGGCCGTATCACATATATACA
1 CATCACATTGGCCATTAGGCCTTATCACATATATACA
75464195 TCTCATACAT
Statistics
Matches: 171, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
143 44 0.26
145 127 0.74
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (143 bp):
CATCACATTGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATT
Found at i:75468028 original size:40 final size:40
Alignment explanation
Indices: 75467979--75468122 Score: 227
Period size: 40 Copynumber: 3.6 Consensus size: 40
75467969 CCAGCATGAT
* **
75467979 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
75468019 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
* *
75468059 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
*
75468099 TGCTCTTCGAAATTTAG-CCGGATA
1 TGCTCTTCGGAATTTAGCCCGGATA
75468123 TAACCACAAG
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 7 0.07
40 91 0.93
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
Found at i:75468146 original size:39 final size:40
Alignment explanation
Indices: 75467979--75468239 Score: 223
Period size: 40 Copynumber: 6.5 Consensus size: 40
75467969 CCAGCATGAT
* ** *
75467979 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAA
*
75468019 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAA
*
75468059 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAA
* * *
75468099 TGCTCTTCGAAATTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAATTTAGCCCGGATAT-ATCACTAGCACGAA
* ** * * *
75468138 TTGC-CTTCGG-GTCTTAAACCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAAT-TTAGCCCGGATATATC-ACT-AGCACGAA
* **
75468179 TGC-CTTCGG-GTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAAT-TTAGCCCGGATATA-TCACTAGCACGAA
* *
75468219 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAATTTAGCCCGG
75468240 GTATCATTCA
Statistics
Matches: 189, Mismatches: 22, Indels: 20
0.82 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 21 0.11
40 163 0.86
41 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAA
Found at i:75470189 original size:37 final size:37
Alignment explanation
Indices: 75470148--75470250 Score: 197
Period size: 37 Copynumber: 2.8 Consensus size: 37
75470138 ATTACGAAGT
75470148 CATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 CATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
*
75470185 CATAATCTCCACACGTAGTCGTCGGGTCTTACCCGGA
1 CATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75470222 CATAATCTCCACACGTAGTCATCGGGTCT
1 CATAATCTCCACACGTAGTCATCGGGTCT
75470251 CGCATGACCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
CATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
Found at i:75474373 original size:40 final size:40
Alignment explanation
Indices: 75474307--75474457 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
75474297 AAATTGAATG
* * *
75474307 ATATCCGGGCTAA-ATCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
75474346 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
75474386 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
75474426 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
75474458 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:75474471 original size:40 final size:40
Alignment explanation
Indices: 75474344--75474473 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
75474334 ATGCTGGAAA
* * * *
75474344 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
75474384 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
75474424 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
75474464 TTATATCCGG
1 TTATATCCGG
75474474 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:75484684 original size:29 final size:29
Alignment explanation
Indices: 75484652--75484729 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
75484642 ATACCCTCCG
** *
75484652 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
75484681 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
75484710 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
75484730 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:75486366 original size:21 final size:22
Alignment explanation
Indices: 75486342--75486384 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75486332 TATAGCGAAT
*
75486342 TTCTTTTA-ATAAACTTAAAGA
1 TTCTTGTAGATAAACTTAAAGA
*
75486363 TTCTTGTAGCTAAACTTAAAGA
1 TTCTTGTAGATAAACTTAAAGA
75486385 GAATTTTCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (22 bp):
TTCTTGTAGATAAACTTAAAGA
Found at i:75489179 original size:31 final size:31
Alignment explanation
Indices: 75489144--75489211 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
75489134 GTTGTCCCAA
* *
75489144 CCTTTTTCATAGCTCGATAGATGAAGCTAAC
1 CCTTTTTCACAGCTCGATAGACGAAGCTAAC
* * * *
75489175 CCTTTTTCACAGTTTGATAGCCGAAGCTATC
1 CCTTTTTCACAGCTCGATAGACGAAGCTAAC
75489206 CCTTTT
1 CCTTTT
75489212 CATTATTTGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (31 bp):
CCTTTTTCACAGCTCGATAGACGAAGCTAAC
Found at i:75489221 original size:30 final size:30
Alignment explanation
Indices: 75489166--75489364 Score: 161
Period size: 30 Copynumber: 6.6 Consensus size: 30
75489156 CTCGATAGAT
* * * *
75489166 GAAGCTAACCCTTTTTCACAGTTTGATAGCC
1 GAAGCTATCCC-TTTTCATAATTTGATAGTC
*
75489197 GAAGCTATCCCTTTTCATTATTTGATAGTC
1 GAAGCTATCCCTTTTCATAATTTGATAGTC
* *
75489227 GTCA-CCATCCCTTTTCATAATTTGATAGTC
1 G-AAGCTATCCCTTTTCATAATTTGATAGTC
* * * *
75489257 AAAGCTATCCCATTTCACAATTTGATAGCC
1 GAAGCTATCCCTTTTCATAATTTGATAGTC
* * * ** * *
75489287 AAAGCTATCCGTTTTCGTTGTTCGATGGTC
1 GAAGCTATCCCTTTTCATAATTTGATAGTC
*
75489317 -ATCA-CTATCCCTTTTCATAATTTAATAGTC
1 GA--AGCTATCCCTTTTCATAATTTGATAGTC
*
75489347 GAGGCTATCCCTTTTCAT
1 GAAGCTATCCCTTTTCAT
75489365 TAGCCGATGA
Statistics
Matches: 131, Mismatches: 31, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
29 2 0.02
30 116 0.89
31 13 0.10
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (30 bp):
GAAGCTATCCCTTTTCATAATTTGATAGTC
Found at i:75489302 original size:90 final size:90
Alignment explanation
Indices: 75489179--75489363 Score: 253
Period size: 90 Copynumber: 2.1 Consensus size: 90
75489169 GCTAACCCTT
* * * *
75489179 TTTCACAGTTTGATAGCCGAAGCTATCCCTTTTCATTATTTGATAGTCGTCACCATCCCTTTTCA
1 TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
*
75489244 TAATTTGATAGTCAAAGCTATCCCA
66 TAATTTAATAGTCAAAGCTATCCCA
* * * * *
75489269 TTTCACAATTTGATAGCCAAAGCTATCCGTTTTCGTTGTTCGATGGTCATCACTATCCCTTTTCA
1 TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
* * *
75489334 TAATTTAATAGTCGAGGCTATCCCT
66 TAATTTAATAGTCAAAGCTATCCCA
75489359 TTTCA
1 TTTCA
75489364 TTAGCCGATG
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (90 bp):
TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
TAATTTAATAGTCAAAGCTATCCCA
Found at i:75491538 original size:43 final size:43
Alignment explanation
Indices: 75491490--75491660 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
75491480 GTTATAAAGA
* *
75491490 TGAGATTATATGTAAGACCATGTCTGGGATATTGGCATTGTAT
1 TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
75491533 TGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TAA
1 TGAGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTAT
* * * * *
75491577 T-AGATTACGTGTAAGACCCTGTCTGGGACAATGGTATCG-AT
1 TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * * *
75491618 ATGTGATAACATGTAAGACCATATCTAGGATA-TGGCATTGTAT
1 -TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
75491661 AAGCTTATGT
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 92 0.88
44 3 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (43 bp):
TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:75503114 original size:30 final size:30
Alignment explanation
Indices: 75503074--75503139 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
75503064 ACGGTCTGTG
* * * *
75503074 ACACGAGCGTGTCTGGTAGCTGTGTGAGGT
1 ACACGGGCGTGTCCGGTAGCCGTGTGAGGC
75503104 ACACGGGCGTGTCCGGTAGCCGTGTGAGGC
1 ACACGGGCGTGTCCGGTAGCCGTGTGAGGC
75503134 ACACGG
1 ACACGG
75503140 CCTGTTCACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.17, C:0.23, G:0.41, T:0.20
Consensus pattern (30 bp):
ACACGGGCGTGTCCGGTAGCCGTGTGAGGC
Found at i:75509512 original size:30 final size:30
Alignment explanation
Indices: 75509476--75509543 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
75509466 TGTCCCAACA
75509476 CTTTTCATAGCTCAATAGCCCAAGCTATCC
1 CTTTTCATAGCTCAATAGCCCAAGCTATCC
* * * **
75509506 CTTTTCACAGGTTAATAGCTGAAGCTATCC
1 CTTTTCATAGCTCAATAGCCCAAGCTATCC
*
75509536 CCTTTCAT
1 CTTTTCAT
75509544 TATTTGATGG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTTCATAGCTCAATAGCCCAAGCTATCC
Found at i:75509572 original size:30 final size:30
Alignment explanation
Indices: 75509532--75509756 Score: 134
Period size: 30 Copynumber: 7.6 Consensus size: 30
75509522 AGCTGAAGCT
*
75509532 ATCCCCTTTCATTATTTGATGGTCGTCACC
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
* *
75509562 ATCCTTTTTCATT-GTTGATGGTCGTCACC
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
* * ** *
75509591 ATCCCTTTTCATAATTTGATAG-CTGAAACT
1 ATCCCTTTTCATTATTTGATGGTC-GTCACC
** * * *** *
75509621 ATCCCTTTTCACAATTGGATAG-CCAAAGCT
1 ATCCCTTTTCATTATTTGATGGTCGTCA-CC
** * ** *
75509651 ATCCCTTTTTGTTGTTCAATGGTCATCACC
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
*
75509681 ATCCCTTTTCATTA-TTGATGGTCGTCATC
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
* * * *** *
75509710 ATCACTTTTCATAATTTGATAGTCGAGGCT
1 ATCCCTTTTCATTATTTGATGGTCGTCACC
75509740 ATCCCTTTTCATTATTT
1 ATCCCTTTTCATTATTT
75509757 TGATTACCAA
Statistics
Matches: 148, Mismatches: 42, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
29 53 0.36
30 93 0.63
31 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATTATTTGATGGTCGTCACC
Found at i:75509582 original size:29 final size:30
Alignment explanation
Indices: 75509532--75509602 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 30
75509522 AGCTGAAGCT
* *
75509532 ATCCCCTTTCATTATTTGATGGTCGTCACC
1 ATCCCTTTTCATTAGTTGATGGTCGTCACC
*
75509562 ATCCTTTTTCATT-GTTGATGGTCGTCACC
1 ATCCCTTTTCATTAGTTGATGGTCGTCACC
75509591 ATCCCTTTTCAT
1 ATCCCTTTTCAT
75509603 AATTTGATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 26 0.70
30 11 0.30
ACGTcount: A:0.15, C:0.28, G:0.13, T:0.44
Consensus pattern (30 bp):
ATCCCTTTTCATTAGTTGATGGTCGTCACC
Found at i:75511846 original size:40 final size:40
Alignment explanation
Indices: 75511766--75511986 Score: 329
Period size: 40 Copynumber: 5.5 Consensus size: 40
75511756 ACCCAAGTTT
* * * *
75511766 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
75511805 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
75511845 CTTCGGGTCTTAGCCCGGATATAACAACTCGCAAAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
75511885 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
75511925 CTTCGGGTCTTAACCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
75511965 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
75511987 CATTCAAATG
Statistics
Matches: 165, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.06
40 154 0.93
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:75515725 original size:40 final size:40
Alignment explanation
Indices: 75515624--75515848 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
75515614 TATTCGAATG
* * *
75515624 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * ** *
75515665 ATAACCGGACTAAAATCCGAAGGCATTCATGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
75515705 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
75515745 ATACCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
75515785 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
75515825 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
75515849 CTTGTGCAAG
Statistics
Matches: 150, Mismatches: 32, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.01
40 122 0.81
41 26 0.17
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:75522623 original size:27 final size:28
Alignment explanation
Indices: 75522576--75522628 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
75522566 TAAAATTAGG
*
75522576 AAATTAATAAATATCCT-AAAATATAAA
1 AAATAAATAAATATCCTAAAAATATAAA
75522603 AAATAAATAAATAT-CTAAAAAATATA
1 AAATAAATAAATATCCT-AAAAATATA
75522629 TATGACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 2 0.09
27 13 0.57
28 8 0.35
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (28 bp):
AAATAAATAAATATCCTAAAAATATAAA
Found at i:75526401 original size:28 final size:28
Alignment explanation
Indices: 75526369--75526433 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
75526359 ATTTACTAGA
*
75526369 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
75526397 ATACCCCTATGTATGTAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
*
75526425 ATATCCCTA
1 ATACCCCTA
75526434 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.34
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:75526640 original size:29 final size:28
Alignment explanation
Indices: 75526539--75526629 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
75526529 AGGAAGCGTC
75526539 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
75526567 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
75526595 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
75526624 CTGGTG
1 CTGGTG
75526630 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:75526654 original size:56 final size:55
Alignment explanation
Indices: 75526539--75526654 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
75526529 AGGAAGCGTC
* *
75526539 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
75526595 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
75526651 CTGG
1 CTGG
75526655 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
55 9 0.17
56 29 0.56
57 14 0.27
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:75527114 original size:19 final size:19
Alignment explanation
Indices: 75527090--75527128 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75527080 TTTTAATTAT
* *
75527090 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
75527109 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
75527128 T
1 T
75527129 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:75527733 original size:11 final size:10
Alignment explanation
Indices: 75527705--75527738 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
75527695 AGCCTGTAAG
75527705 TATTCTGAAT
1 TATTCTGAAT
*
75527715 TTTTCTGAAT
1 TATTCTGAAT
75527725 ATATTCTGAAT
1 -TATTCTGAAT
75527736 TAT
1 TAT
75527739 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:75534218 original size:28 final size:28
Alignment explanation
Indices: 75534186--75534247 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
75534176 ATTTACTAGA
*
75534186 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
75534214 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
75534242 ATACCC
1 ATACCC
75534248 TTAGGGTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:75534457 original size:29 final size:28
Alignment explanation
Indices: 75534356--75534446 Score: 123
Period size: 28 Copynumber: 3.2 Consensus size: 28
75534346 AGGAAGCGTC
75534356 CTGGTGGCTA-TGCCAC-AAATCATCTGTT
1 CTGGTGGC-ACTGCCACAAAAT-ATCTGTT
* *
75534384 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
75534412 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
75534441 CTGGTG
1 CTGGTG
75534447 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 46 0.82
29 10 0.18
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:75534470 original size:56 final size:55
Alignment explanation
Indices: 75534356--75534471 Score: 130
Period size: 56 Copynumber: 2.1 Consensus size: 55
75534346 AGGAAGCGTC
*
75534356 CTGGTGGCTATGCCACAAATCATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAATCATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
75534412 CTGGTGGC-ACTGCCACAAAAT-ATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTTT
1 CTGGTGGCTA-TGCCAC-AAATCATCTGT-TCTGGTGACCCTGCCACAATTATCTG-TT
75534468 CTGG
1 CTGG
75534472 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
55 8 0.15
56 26 0.50
57 18 0.35
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAATCATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:75534932 original size:19 final size:19
Alignment explanation
Indices: 75534908--75534946 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75534898 TTTTAATTAT
* *
75534908 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
75534927 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
75534946 T
1 T
75534947 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:75539261 original size:24 final size:23
Alignment explanation
Indices: 75539213--75539268 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
75539203 TTTTCTCCTA
* *
75539213 AATTTTTATTTTATTTAATATTT
1 AATTTTTAATTTATTGAATATTT
75539236 AATTTTCTAATTTATTGAAT-TATT
1 AATTTT-TAATTTATTGAATAT-TT
75539260 AATATTTTA
1 AAT-TTTTA
75539269 TACTAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.25
24 18 0.64
25 3 0.11
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
AATTTTTAATTTATTGAATATTT
Found at i:75553412 original size:38 final size:38
Alignment explanation
Indices: 75553361--75553626 Score: 370
Period size: 38 Copynumber: 6.9 Consensus size: 38
75553351 TCCCGCAGGC
* * **
75553361 AAATCCCGTAGGCTTCGTGCTGGTAATATATCAAGGTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
*
75553399 AAATCCCGCAGGCTTCGTGCTGGTATTATATTCGGGTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
*
75553437 AAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
*
75553475 AAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGCTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG-TT
* * **
75553514 AAAGACTCGCAGGCTTCGTGCTGGTAAAATATCCGGGTT
1 AAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* *
75553553 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGAT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* * *
75553591 AAATCCCGTAGGCTTAGTGCTGGTATTATATTCGGG
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
75553627 CCTTCGTGCC
Statistics
Matches: 204, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
38 166 0.81
39 10 0.05
40 28 0.14
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
Found at i:75553563 original size:116 final size:115
Alignment explanation
Indices: 75553361--75553627 Score: 383
Period size: 116 Copynumber: 2.3 Consensus size: 115
75553351 TCCCGCAGGC
* ** * *
75553361 AAATCCCGTAGGCTTCGTGCTGGTAATATATCAAGG-TTAAATCCCGCAGGCTTCGTGCTGGTAT
1 AAATCCCGTAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAACCCGCAGGCTTCGTGCTGGTAA
* * *
75553425 TATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTT
66 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGAT
* * *
75553475 AAATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACTCGCAGGCTTCGTGCTGGTA
1 AAATCCCGTAGGCTTCGTGCTGGTATTATATCCGGGCTTAAA-ACCCGCAGGCTTCGTGCTGGTA
* *
75553540 AAATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGAT
65 AAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGAT
* *
75553591 AAATCCCGTAGGCTTAGTGCTGGTATTATATTCGGGC
1 AAATCCCGTAGGCTTCGTGCTGGTATTATATCCGGGC
75553628 CTTCGTGCCT
Statistics
Matches: 134, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
114 31 0.23
115 5 0.04
116 98 0.73
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (115 bp):
AAATCCCGTAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAACCCGCAGGCTTCGTGCTGGTAA
AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGAT
Found at i:75553674 original size:43 final size:41
Alignment explanation
Indices: 75553601--75553683 Score: 130
Period size: 43 Copynumber: 2.0 Consensus size: 41
75553591 AAATCCCGTA
75553601 GGCTTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCT
1 GGCTTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCT
* *
75553642 GGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 GGCTTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTAGC
75553684 AGACGTAATG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 13 0.34
42 2 0.05
43 23 0.61
ACGTcount: A:0.10, C:0.23, G:0.33, T:0.35
Consensus pattern (41 bp):
GGCTTAGTGCTGGTATTATATTCGGGCCTTCGTGCCTAGCT
Found at i:75558261 original size:30 final size:30
Alignment explanation
Indices: 75558225--75558384 Score: 215
Period size: 29 Copynumber: 5.5 Consensus size: 30
75558215 GACAAGATTG
* * * *
75558225 GCACTAAGTGTGCGGGTTTAAAATTGTACT-
1 GCACTAAGTGTGCGAGCTGAAAATTATA-TA
*
75558255 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
75558283 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75558312 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75558342 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
75558371 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75558385 GATTCACTAT
Statistics
Matches: 120, Mismatches: 4, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
27 3 0.03
28 21 0.17
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:75558352 original size:59 final size:57
Alignment explanation
Indices: 75558255--75558384 Score: 217
Period size: 59 Copynumber: 2.2 Consensus size: 57
75558245 AAATTGTACT
*
75558255 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
75558312 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTG---ATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
75558371 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75558385 GATTCACTAT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
56 2 0.03
57 16 0.23
59 51 0.74
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:75564060 original size:46 final size:42
Alignment explanation
Indices: 75563960--75564085 Score: 144
Period size: 46 Copynumber: 2.8 Consensus size: 42
75563950 GGGATATTTG
* * *
75563960 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTAATGAAT
*
75564003 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATGTAACT
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGT-AATG-AA-T
75564051 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 -GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
75564086 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 5, Indels: 11
0.82 0.06 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.03
45 1 0.01
46 62 0.87
47 1 0.01
48 3 0.04
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (42 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAATGAAT
Done.