Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 255 of 328
Found at i:75852484 original size:93 final size:93
Alignment explanation
Indices: 75852325--75852496 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75852315 TGGATATTTG
* *
75852325 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75852390 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75852418 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75852483 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75852497 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75858807 original size:17 final size:17
Alignment explanation
Indices: 75858785--75858817 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75858775 TCAATTCAAT
75858785 CATTTATCGGGATTTAA
1 CATTTATCGGGATTTAA
*
75858802 CATTTATCGGGCTTTA
1 CATTTATCGGGATTTA
75858818 TCGAATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (17 bp):
CATTTATCGGGATTTAA
Found at i:75869908 original size:20 final size:20
Alignment explanation
Indices: 75869871--75869906 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
75869861 ATAATTTAGC
75869871 TTAATT-AACCTTTATTTAA
1 TTAATTAAACCTTTATTTAA
75869890 TTAATTAAACC-TTATTT
1 TTAATTAAACCTTTATTT
75869907 TAGTTAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATTAAACCTTTATTTAA
Found at i:75869913 original size:20 final size:20
Alignment explanation
Indices: 75869864--75869918 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
75869854 TTAAATTATA
75869864 ATTTAGCTTAATT-AACCTTT
1 ATTTAG-TTAATTAAACCTTT
*
75869884 ATTTAATTAATTAAACC-TT
1 ATTTAGTTAATTAAACCTTT
75869903 ATTTTAGTTAAGTTAA
1 A-TTTAGTTAA-TTAA
75869919 TGGGCCTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 9 0.30
20 17 0.57
21 4 0.13
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.49
Consensus pattern (20 bp):
ATTTAGTTAATTAAACCTTT
Found at i:75888313 original size:124 final size:122
Alignment explanation
Indices: 75888094--75888315 Score: 275
Period size: 124 Copynumber: 1.8 Consensus size: 122
75888084 AATTATGTGG
* * * * *
75888094 AATGAAATATGGATGTATTGATTTTTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGCT
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGCT
* * * * **
75888159 AAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGAA
66 AAGCCCCAAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGAA
* * *
75888216 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCGG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCGG
*
75888280 GCTAAGCCCCAAAGACAATTATGCTGGAAATTATAA
63 GCTAAGCCCCAAAGACAATTATGCTAGAAATTATAA
75888316 CCGGGTTAAG
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
122 15 0.18
124 64 0.78
125 3 0.04
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (122 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGCT
AAGCCCCAAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGAA
Found at i:75888360 original size:40 final size:40
Alignment explanation
Indices: 75888316--75888423 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 40
75888306 GAAATTATAA
* * *
75888316 CCGGGTTAAGACCTGAAGGCAATTGTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATACTAT
*
75888356 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATACTAT
*
75888396 CCGGGCTAAGACCCGAAGGCATTTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
75888424 AAATCGTGAT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 51 0.86
41 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATACTAT
Found at i:75888437 original size:40 final size:40
Alignment explanation
Indices: 75888354--75888455 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
75888344 TAGTGGCTAC
* * **
75888354 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
75888394 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
75888434 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
75888456 CTTGGTGCGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:75896387 original size:40 final size:39
Alignment explanation
Indices: 75896222--75896405 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75896212 AAATTGAATG
* * *
75896222 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75896262 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75896302 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75896342 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75896381 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75896406 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75896430 original size:80 final size:81
Alignment explanation
Indices: 75896262--75896450 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75896252 GCTGGAAATT
* * * *
75896262 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75896327 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75896343 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75896406 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75896422 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75896451 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75902350 original size:121 final size:121
Alignment explanation
Indices: 75902128--75902352 Score: 346
Period size: 121 Copynumber: 1.9 Consensus size: 121
75902118 TGCTCATTAT
* *
75902128 TCTATCATTTAATTTGTATTCTTAGGTTAGTTATCATACTTTTCATGTTAAATCAAGTTCTTAGG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACTTTTCATGTTAAATCAAGTTATTAGG
* *
75902193 AAAATCTCATACCCATGACATTACTATGCTCATCTCATGCTATTACCATGCCAATG
66 AAAACCCCATACCCATGACATTACTATGCTCATCTCATGCTATTACCATGCCAATG
** *
75902249 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATA-TATTTTGTGTTAAAT-GAGTTATTAG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACT-TTTCATGTTAAATCAAGTTATTAG
*
75902312 GAAAACCCCATACCCATGACATTACTATTCTCATTCTCATG
65 GAAAACCCCATACCCATGACATTACTATGCTCA-TCTCATG
75902353 ATTCTTTTGG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
120 39 0.41
121 55 0.59
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (121 bp):
TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACTTTTCATGTTAAATCAAGTTATTAGG
AAAACCCCATACCCATGACATTACTATGCTCATCTCATGCTATTACCATGCCAATG
Found at i:75906483 original size:40 final size:40
Alignment explanation
Indices: 75906438--75906604 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
75906428 CGGAATATAA
75906438 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75906478 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
75906518 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75906558 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75906597 CCGGATAT
1 CCGGATAT
75906605 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75914243 original size:40 final size:40
Alignment explanation
Indices: 75914198--75914365 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
75914188 CGGAATATAA
75914198 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75914238 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
75914278 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
75914318 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75914358 CCGGATAT
1 CCGGATAT
75914366 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75921989 original size:12 final size:11
Alignment explanation
Indices: 75921972--75922031 Score: 61
Period size: 12 Copynumber: 5.3 Consensus size: 11
75921962 ATTGAGTCTA
75921972 TTTATTTTTAT
1 TTTATTTTTAT
75921983 GTTTA-TTTT-T
1 -TTTATTTTTAT
75921993 TTTAGTTTTTAT
1 TTTA-TTTTTAT
*
75922005 TCTTATTTTTCT
1 T-TTATTTTTAT
75922017 ATTTATTTTTAT
1 -TTTATTTTTAT
75922029 TTT
1 TTT
75922032 CCTAGACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
9 4 0.10
10 1 0.02
11 11 0.27
12 21 0.51
13 4 0.10
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.78
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:75922004 original size:22 final size:21
Alignment explanation
Indices: 75921972--75922029 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 21
75921962 ATTGAGTCTA
75921972 TTTATTTTTATGT-TTATTTTT
1 TTTATTTTTAT-TCTTATTTTT
75921993 TTTAGTTTTTATTCTTATTTTTCT
1 TTTA-TTTTTATTCTTA-TTTT-T
75922017 ATTTATTTTTATT
1 -TTTATTTTTATT
75922030 TTCCTAGACT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 5 0.16
22 10 0.31
23 4 0.12
24 9 0.28
25 4 0.12
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (21 bp):
TTTATTTTTATTCTTATTTTT
Found at i:75922027 original size:6 final size:6
Alignment explanation
Indices: 75921972--75922031 Score: 54
Period size: 6 Copynumber: 10.3 Consensus size: 6
75921962 ATTGAGTCTA
* * * *
75921972 TTTATT TTTATG TTTA-- TTT-TT TTTAGTT TTTATT CTTATT TTTCTA
1 TTTATT TTTATT TTTATT TTTATT TTTA-TT TTTATT TTTATT TTTATT
75922018 TTTATT TTTATT TT
1 TTTATT TTTATT TT
75922032 CCTAGACTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
4 3 0.07
5 3 0.07
6 31 0.72
7 6 0.14
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:75930300 original size:13 final size:13
Alignment explanation
Indices: 75930282--75930306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75930272 GTAATCACGT
75930282 CACACGGGCGTGG
1 CACACGGGCGTGG
75930295 CACACGGGCGTG
1 CACACGGGCGTG
75930307 TTCCTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.44, T:0.08
Consensus pattern (13 bp):
CACACGGGCGTGG
Found at i:75932135 original size:46 final size:48
Alignment explanation
Indices: 75931880--75932242 Score: 261
Period size: 46 Copynumber: 7.6 Consensus size: 48
75931870 GGTAGAATGT
* * * * *
75931880 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGC
* * * *
75931927 CGATGCCATGCCCCAGACATGTGGTCTTACATTGAC-TATCGTCATCGAGGC
1 CGATGCCATGTCCCAGACA--TGGTCTTACACTGGCTTA-CATC-TCGAGGC
* * * * *
75931978 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTTG-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACAT-CTCGAGGC
* * * *
75932028 CGATGCCATGCCCCAAACATGGTCTTACACTGAC--ACATCTC-ATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GGC
* * *
75932074 TGAT-ACATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGC
* * * *
75932120 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGC
* * * *
75932166 CGATGTCATGTCCCAGACATGGTGTTACACTGGCTCT-CATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGC
75932214 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
75932243 AGCTCACAAT
Statistics
Matches: 252, Mismatches: 45, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
44 12 0.05
45 13 0.05
46 70 0.28
47 47 0.19
48 24 0.10
49 28 0.11
50 33 0.13
51 24 0.10
52 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGC
Found at i:75932933 original size:13 final size:13
Alignment explanation
Indices: 75932915--75932939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75932905 CTAAAAGTAA
75932915 AAAAATCATCAAG
1 AAAAATCATCAAG
75932928 AAAAATCATCAA
1 AAAAATCATCAA
75932940 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:75933726 original size:14 final size:15
Alignment explanation
Indices: 75933707--75933735 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75933697 GAATTTTCTT
75933707 GAAAAATTAA-TTTG
1 GAAAAATTAACTTTG
75933721 GAAAAATTAACTTTG
1 GAAAAATTAACTTTG
75933736 TTCAAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.03, G:0.14, T:0.34
Consensus pattern (15 bp):
GAAAAATTAACTTTG
Found at i:75938523 original size:22 final size:22
Alignment explanation
Indices: 75938468--75938556 Score: 63
Period size: 23 Copynumber: 4.0 Consensus size: 22
75938458 TGAGCTGATG
* *
75938468 AACAGTAAGCACTATTGAGCTA
1 AACAGTAAACTCTATTGAGCTA
* * *
75938490 AATCGGTAAACTCTATTGAGTTC
1 AA-CAGTAAACTCTATTGAGCTA
* *
75938513 AACAGTAAACTCCAATGAGCTGA
1 AACAGTAAACTCTATTGAGCT-A
* *
75938536 AACAATAAGCTCT-TATGAGCT
1 AACAGTAAACTCTAT-TGAGCT
75938557 GATATATCGA
Statistics
Matches: 50, Mismatches: 14, Indels: 5
0.72 0.20 0.07
Matches are distributed among these distances:
22 17 0.34
23 33 0.66
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (22 bp):
AACAGTAAACTCTATTGAGCTA
Found at i:75940009 original size:61 final size:59
Alignment explanation
Indices: 75939940--75940055 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 59
75939930 AATATTTATA
* * *
75939940 TTAATATTAAATTTAAT-TCAATGTTTATCTATAAGATAAA-ATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCT-AATATTTATCT-T--GATAAATATTATATTAATTTAATAAGAT
75940001 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
75940056 TTAAATTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
58 6 0.12
59 15 0.30
60 1 0.02
61 27 0.54
62 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:75942258 original size:22 final size:22
Alignment explanation
Indices: 75942214--75942278 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
75942204 GCATTACTAA
*
75942214 TAAAAATTATTTTTTTTCATTTTT
1 TAAAAATTATTTTTTAT--TTTTT
*
75942238 TAAAAATTATCTTTTA-TTTTT
1 TAAAAATTATTTTTTATTTTTT
*
75942259 AAAAAATATATTTTTTATTT
1 TAAAAAT-TATTTTTTATTT
75942279 CTCAAGATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 11 0.31
22 8 0.23
23 2 0.06
24 14 0.40
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (22 bp):
TAAAAATTATTTTTTATTTTTT
Found at i:75942259 original size:20 final size:22
Alignment explanation
Indices: 75942227--75942278 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
75942217 AAATTATTTT
*
75942227 TTTTCATTTTTTAAAAAT-TATC
1 TTTT-ATTTTTAAAAAATATATC
*
75942249 TTTTATTTTTAAAAAATATATT
1 TTTTATTTTTAAAAAATATATC
75942271 TTTTATTT
1 TTTTATTT
75942279 CTCAAGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTATTTTTAAAAAATATATC
Found at i:75942654 original size:25 final size:25
Alignment explanation
Indices: 75942620--75942676 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
75942610 GTCCGTATTA
*
75942620 TCAATTTTTAGTTAATTCAACCAAT
1 TCAATTTTTAATTAATTCAACCAAT
*
75942645 TCAATTTTTAATTAATTCAATCAAT
1 TCAATTTTTAATTAATTCAACCAAT
75942670 TCAATTT
1 TCAATTT
75942677 ATCGATTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (25 bp):
TCAATTTTTAATTAATTCAACCAAT
Found at i:75943129 original size:32 final size:33
Alignment explanation
Indices: 75943082--75943147 Score: 125
Period size: 32 Copynumber: 2.0 Consensus size: 33
75943072 ATACTAATAG
75943082 ATACCCAAAACCAAAATTTCAGGAAGCAATCAT
1 ATACCCAAAACCAAAATTTCAGGAAGCAATCAT
75943115 ATACCC-AAACCAAAATTTCAGGAAGCAATCAT
1 ATACCCAAAACCAAAATTTCAGGAAGCAATCAT
75943147 A
1 A
75943148 AAAAAACTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 27 0.82
33 6 0.18
ACGTcount: A:0.48, C:0.24, G:0.09, T:0.18
Consensus pattern (33 bp):
ATACCCAAAACCAAAATTTCAGGAAGCAATCAT
Found at i:75951589 original size:57 final size:57
Alignment explanation
Indices: 75951525--75951639 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
75951515 ACTCAATTAG
*
75951525 GGGTCCAATACAATTAGTCATTGCAATTATATTTTAATTTTACAATTAAATTTATTT
1 GGGTCCAATACAATTAGTCATTGCAATTATATTTTAATTCTACAATTAAATTTATTT
*
75951582 GGGTCCAATACAATTAGTCATTGCAGTTATATTTTAATTCTACAATTAAATTTATTT
1 GGGTCCAATACAATTAGTCATTGCAATTATATTTTAATTCTACAATTAAATTTATTT
75951639 G
1 G
75951640 CACATAGAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.44
Consensus pattern (57 bp):
GGGTCCAATACAATTAGTCATTGCAATTATATTTTAATTCTACAATTAAATTTATTT
Found at i:75962147 original size:79 final size:80
Alignment explanation
Indices: 75962046--75962229 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
75962036 ACGACTCGCT
** * *
75962046 CAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCCG
* *
75962110 GGTTTAGTAACTT-GCA
64 GATATAGTAACTTAGCA
* * **
75962126 CAAATGCCTTCGGG-CTTAGCCCGAATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCG-GTTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
75962190 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
75962206 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
75962230 ACATCATTCG
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 32 0.36
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCA
Found at i:75962230 original size:40 final size:39
Alignment explanation
Indices: 75962039--75962230 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
75962029 GGATATAACG
* ** * *
75962039 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75962079 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75962119 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGAATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
75962158 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
75962198 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
75962231 CATCATTCGA
Statistics
Matches: 119, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 78 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:75965783 original size:40 final size:40
Alignment explanation
Indices: 75965738--75965867 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
75965728 CGGAATATAA
75965738 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
75965778 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75965818 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
75965858 CCGGATATAA
1 CCGGATATAA
75965868 TTTTCAACAT
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75965888 original size:80 final size:80
Alignment explanation
Indices: 75965754--75965903 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
75965744 ATAACCACGT
* * *
75965754 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCACACGAATGCCTTCGGGGCTTAGCC
75965819 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
75965834 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAT-TTTCA-ACATAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCACAC-GAA-TGCCTTCGGGGCTTAG
75965897 CCCGGAT
64 CCCGGAT
75965904 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
78 2 0.03
79 5 0.08
80 53 0.88
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCACACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:75971893 original size:5 final size:5
Alignment explanation
Indices: 75971883--75971937 Score: 65
Period size: 5 Copynumber: 10.0 Consensus size: 5
75971873 AAGCTAAATT
75971883 AATAA AATAAA AATAA AATAAA AATAAA AATAAA TAATAA AATAA AATAA
1 AATAA AAT-AA AATAA AAT-AA AAT-AA AAT-AA -AATAA AATAA AATAA
75971933 AATAA
1 AATAA
75971938 TATCTTCTAG
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
5 23 0.49
6 21 0.45
7 3 0.06
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:75971895 original size:6 final size:6
Alignment explanation
Indices: 75971886--75971934 Score: 68
Period size: 6 Copynumber: 8.5 Consensus size: 6
75971876 CTAAATTAAT
75971886 AAAATA AAAAT- AAAATA AAAATA AAAATA AATAAT- AAAAT- AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA AAAATA
75971932 AAA
1 AAA
75971935 TAATATCTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
5 13 0.32
6 24 0.60
7 3 0.08
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:75971899 original size:11 final size:11
Alignment explanation
Indices: 75971883--75971937 Score: 85
Period size: 11 Copynumber: 4.9 Consensus size: 11
75971873 AAGCTAAATT
75971883 AATAAAATAAA
1 AATAAAATAAA
75971894 AATAAAATAAA
1 AATAAAATAAA
75971905 AATAAAAATAAA
1 AAT-AAAATAAA
75971917 TAATAAAAT-AA
1 -AATAAAATAAA
75971928 AATAAAATAA
1 AATAAAATAA
75971938 TATCTTCTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.20
11 17 0.41
12 13 0.32
13 3 0.07
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:75971908 original size:17 final size:17
Alignment explanation
Indices: 75971883--75971934 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
75971873 AAGCTAAATT
75971883 AATAAAATAAAAAT-AA
1 AATAAAATAAAAATAAA
75971899 AATAAAAATAAAAATAAA
1 AAT-AAAATAAAAATAAA
75971917 TAATAAAAT-AAAATAAA
1 -AATAAAATAAAAATAAA
75971934 A
1 A
75971935 TAATATCTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.12
17 19 0.58
18 7 0.21
19 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (17 bp):
AATAAAATAAAAATAAA
Found at i:75971924 original size:18 final size:18
Alignment explanation
Indices: 75971877--75971939 Score: 78
Period size: 18 Copynumber: 3.5 Consensus size: 18
75971867 AGGCTAAAGC
75971877 TAAATTAATAAAATAAAAA
1 TAAA-TAATAAAATAAAAA
75971896 T-AA-AATAAAAATAAAAA
1 TAAATAAT-AAAATAAAAA
75971913 TAAATAATAAAAT-AAAA
1 TAAATAATAAAATAAAAA
75971930 TAAAATAATA
1 T-AAATAATA
75971940 TCTTCTAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.08
17 16 0.40
18 17 0.43
19 4 0.10
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAATAATAAAATAAAAA
Found at i:75972542 original size:4 final size:4
Alignment explanation
Indices: 75972533--75972560 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
75972523 CAGTCTTAAA
75972533 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
75972561 TTTTGAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:75972671 original size:13 final size:13
Alignment explanation
Indices: 75972655--75972688 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
75972645 GCACCTTACC
*
75972655 CCGGTTACTCAAT
1 CCGGTCACTCAAT
75972668 CCGGTCACTCAAT
1 CCGGTCACTCAAT
75972681 CCGGTCAC
1 CCGGTCAC
75972689 ATTTTCGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.24
Consensus pattern (13 bp):
CCGGTCACTCAAT
Found at i:75982034 original size:93 final size:93
Alignment explanation
Indices: 75981922--75982093 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75981912 CGCCCATAAG
* *
75981922 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75981987 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75982015 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75982080 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75982094 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75982090 original size:46 final size:46
Alignment explanation
Indices: 75981915--75982090 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75981905 TGTAACCCGC
* * *
75981915 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75981961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75982011 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75982054 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75982091 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75989594 original size:93 final size:93
Alignment explanation
Indices: 75989482--75989653 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75989472 CGCCCATAAG
* *
75989482 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75989547 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75989575 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75989640 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75989654 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75989650 original size:46 final size:46
Alignment explanation
Indices: 75989475--75989650 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75989465 TGTAACCCGC
* * *
75989475 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75989521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75989571 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75989614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75989651 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75993654 original size:28 final size:28
Alignment explanation
Indices: 75993593--75993690 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
75993583 TCACAAATTG
** * *
75993593 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
75993622 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
75993650 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
75993678 GCACTAAGTGTGC
1 GCACTAAGTGTGC
75993691 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:75997947 original size:34 final size:34
Alignment explanation
Indices: 75997904--75998014 Score: 159
Period size: 34 Copynumber: 3.3 Consensus size: 34
75997894 AAATGTATAT
* *
75997904 ATATATATTCACCTTCGATTATATCAAACCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* * *
75997938 ATATATATTCACTTTCGGTTATACCAAGCTATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* *
75997972 ATATATAATCACCTTCGATTATGCCAAGCCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
75998006 ATATATATT
1 ATATATATT
75998015 TATTTACTTC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (34 bp):
ATATATATTCACCTTCGATTATACCAAGCCATAC
Found at i:76005154 original size:34 final size:34
Alignment explanation
Indices: 76005088--76005167 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
76005078 AATATATATA
* * *
76005088 TATATATATATATTCACTTTCAGTTATACCAAGC
1 TATACATATATAATCACCTTCAGTTATACCAAGC
*
76005122 TATACATATATAATCACCTTC-GATTATGCCAAGC
1 TATACATATATAATCACCTTCAG-TTATACCAAGC
*
76005156 CATACATATATA
1 TATACATATATA
76005168 TTTATGCACT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 1 0.03
34 39 0.98
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (34 bp):
TATACATATATAATCACCTTCAGTTATACCAAGC
Found at i:76007653 original size:6 final size:6
Alignment explanation
Indices: 76007644--76007688 Score: 74
Period size: 6 Copynumber: 7.5 Consensus size: 6
76007634 CTAAATTAAT
76007644 AAAATA AAAATA AAAATA AAAATA AAAATA AATAAT- AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA AAA
76007689 TAATATATTC
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
5 3 0.08
6 31 0.84
7 3 0.08
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:76007667 original size:18 final size:18
Alignment explanation
Indices: 76007635--76007688 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
76007625 AGGCTAAAGC
76007635 TAAATTAATAAAATAAAAA
1 TAAA-TAATAAAATAAAAA
76007654 TAAA-AATAAAAATAAAAA
1 TAAATAAT-AAAATAAAAA
76007672 TAAATAATAAAATAAAA
1 TAAATAATAAAATAAAA
76007689 TAATATATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 3 0.09
18 23 0.70
19 7 0.21
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
TAAATAATAAAATAAAAA
Found at i:76008780 original size:14 final size:14
Alignment explanation
Indices: 76008773--76008799 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76008763 AATGTTTTTC
76008773 GAAAAATGATTTAT
1 GAAAAATGATTTAT
76008787 GAAAAATGATTTA
1 GAAAAATGATTTA
76008800 CTTTTCTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (14 bp):
GAAAAATGATTTAT
Found at i:76008814 original size:19 final size:19
Alignment explanation
Indices: 76008790--76008827 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
76008780 GATTTATGAA
76008790 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
76008809 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
76008828 TGTTTAGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:76008931 original size:20 final size:20
Alignment explanation
Indices: 76008908--76008947 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76008898 CTATTTTTAC
76008908 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
76008928 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
76008948 TTTAAATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:76008965 original size:29 final size:29
Alignment explanation
Indices: 76008933--76008990 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
76008923 TATATATATA
*
76008933 TTAATAAATTTATATTTTAAATTGTTTTT
1 TTAATAAATTTATACTTTAAATTGTTTTT
76008962 TTAATAAATTTATACTTTAAATTGTTTTT
1 TTAATAAATTTATACTTTAAATTGTTTTT
76008991 ACATATATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (29 bp):
TTAATAAATTTATACTTTAAATTGTTTTT
Found at i:76008980 original size:16 final size:15
Alignment explanation
Indices: 76008927--76008981 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
76008917 TAAATTTATA
76008927 TATATATTAATAAATT
1 TATAT-TTAATAAATT
76008943 TATATTT--TAAATT
1 TATATTTAATAAATT
* *
76008956 GTTTTTTTAATAAATT
1 -TATATTTAATAAATT
76008972 TATACTTTAA
1 TATA-TTTAA
76008982 ATTGTTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
13 6 0.19
14 5 0.16
15 4 0.13
16 16 0.52
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (15 bp):
TATATTTAATAAATT
Found at i:76010278 original size:21 final size:21
Alignment explanation
Indices: 76010254--76010319 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
76010244 TATCCAACCA
76010254 AATAAATTCAATATCTAACAT
1 AATAAATTCAATATCTAACAT
* *
76010275 AATAAATTCAACAAGCTTAAAACAT
1 AATAAATTCAA-TATC-T--AACAT
*
76010300 AATAAATTTAATATCTAACA
1 AATAAATTCAATATCTAACA
76010320 AATTCAAGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 15 0.42
22 2 0.06
23 2 0.06
24 2 0.06
25 15 0.42
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.30
Consensus pattern (21 bp):
AATAAATTCAATATCTAACAT
Found at i:76014776 original size:5 final size:5
Alignment explanation
Indices: 76014766--76014803 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
76014756 TTTTGTGAAA
*
76014766 AAAAT AAAAT AAAAT AAAAT AAAGAA AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
76014804 CACACAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:76019234 original size:5 final size:5
Alignment explanation
Indices: 76019224--76019261 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
76019214 ATTTGTGAAA
*
76019224 AAAAT AAAAT AAAAT AAAAT AAAGAA AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
76019262 CACACAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:76027432 original size:39 final size:40
Alignment explanation
Indices: 76027351--76027432 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
76027341 ATTATTGTTT
* * *
76027351 AATGCACATACGTGCCCTTGTTTGTACTTCGATACCTTTG
1 AATGCACATACGTGCCCTTGTTTATACTTCGAAACCTCTG
*
76027391 AATGCACATACGTGCCC-TGTTTATACTTTGGAAACC-CTG
1 AATGCACATACGTGCCCTTGTTTATAC-TTCGAAACCTCTG
76027430 AAT
1 AAT
76027433 CAAATAGTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 13 0.35
40 24 0.65
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (40 bp):
AATGCACATACGTGCCCTTGTTTATACTTCGAAACCTCTG
Found at i:76032687 original size:15 final size:17
Alignment explanation
Indices: 76032662--76032694 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
76032652 CTTTATAATA
76032662 TCATCCTATTGCA-CAT
1 TCATCCTATTGCATCAT
76032678 TCAT-CTATTGCATCAT
1 TCATCCTATTGCATCAT
76032694 T
1 T
76032695 TAAAGGCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.42
Consensus pattern (17 bp):
TCATCCTATTGCATCAT
Found at i:76033677 original size:44 final size:44
Alignment explanation
Indices: 76033614--76033733 Score: 150
Period size: 45 Copynumber: 2.7 Consensus size: 44
76033604 TGCATCCATA
76033614 ATGAACTCGGACCAACTCAACGAGCTCGAATACTCACATATATC
1 ATGAACTCGGACCAACTCAACGAGCTCGAATACTCACATATATC
* * * * *
76033658 ATGAACTTGGACCAACTCAACAAGTTCGGATTTCTCACATATATC
1 ATGAACTCGGACCAACTCAACGAGCTC-GAATACTCACATATATC
* ** *
76033703 AAGAACTCAAACCAACTCAAAGAGCTCGAAT
1 ATGAACTCGGACCAACTCAACGAGCTCGAAT
76033734 TTCTAAATTC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
44 27 0.44
45 35 0.56
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.22
Consensus pattern (44 bp):
ATGAACTCGGACCAACTCAACGAGCTCGAATACTCACATATATC
Found at i:76038546 original size:40 final size:42
Alignment explanation
Indices: 76038498--76038713 Score: 355
Period size: 42 Copynumber: 5.2 Consensus size: 42
76038488 GCTCTCGATA
*
76038498 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
*
76038540 T-A-ATATATATCCGGGTTAAATCCCGCAGGCTTCGTCCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
76038580 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
76038622 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
* * * *
76038664 TAATATATATATCTGGATTAAATCCCGCAGGCTTAGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
*
76038706 TACTATAT
1 TAATATAT
76038714 CCGGACTTAG
Statistics
Matches: 165, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
40 38 0.23
41 2 0.01
42 125 0.76
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (42 bp):
TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGG
Found at i:76050640 original size:42 final size:42
Alignment explanation
Indices: 76050593--76050887 Score: 442
Period size: 42 Copynumber: 7.2 Consensus size: 42
76050583 GCTCTCGATA
76050593 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
76050635 T-A-ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
76050675 T-A-ATATATATCCAGGTTAAATCCCGCAGGCTT-GTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
* *
76050714 T-A-ATATATATCCAGGTTAAATCCTGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
* * *
76050754 TAATATATATATCTGGGTTAAATCCCGTAGGTTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
**
76050796 TAATATATATATCTAGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
* *
76050838 TAATATATATATTCGGGTTAAATCCCGTAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
76050880 TACTATAT
1 TAATATAT
76050888 CCGGACTTAG
Statistics
Matches: 235, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
39 38 0.16
40 77 0.33
41 2 0.01
42 118 0.50
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (42 bp):
TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
Found at i:76054654 original size:14 final size:14
Alignment explanation
Indices: 76054635--76054661 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76054625 TATGATGCAT
76054635 AAATGGTAAGTCTC
1 AAATGGTAAGTCTC
76054649 AAATGGTAAGTCT
1 AAATGGTAAGTCT
76054662 ATATTGAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (14 bp):
AAATGGTAAGTCTC
Found at i:76062841 original size:43 final size:42
Alignment explanation
Indices: 76062794--76062892 Score: 103
Period size: 42 Copynumber: 2.3 Consensus size: 42
76062784 TCTCAGACGT
*
76062794 GGTCTTACATGTAATCAAACATCGATGCC-ACTGTCCTAGACAA
1 GGTCTTACATGTAATCAAACA-CGATGCCGA-TGTCCCAGACAA
* * * *
76062837 GGTCTTACACT-AAATCAGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACA-TGTAATCAAACACGATGCCGATGTCCCAGACAA
*
76062879 GGTCTTACACGTAA
1 GGTCTTACATGTAA
76062893 AACAGAAGTC
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
42 28 0.61
43 17 0.37
44 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAACACGATGCCGATGTCCCAGACAA
Found at i:76062877 original size:42 final size:41
Alignment explanation
Indices: 76062816--76062939 Score: 124
Period size: 42 Copynumber: 2.9 Consensus size: 41
76062806 AATCAAACAT
* *
76062816 CGATGCCACTGTCCTAGACAAGGTCTTACACTAAATCAGATA-
1 CGATGCCA-TGTCCCAGACATGGTCTTACACTAAATCAGA-AG
*
76062858 CGATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAGAAG
1 CGATGCC-ATGTCCCAGACATGGTCTTACAC-TAAATCAGAAG
* * * *
76062901 TCGATGCCAACGTCCCAAACGTGGTCTTACACGAAATCA
1 -CGATGCC-ATGTCCCAGACATGGTCTTACACTAAATCA
76062940 CATATCAGAT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 28 0.41
43 14 0.20
44 27 0.39
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAAATCAGAAG
Found at i:76064330 original size:15 final size:17
Alignment explanation
Indices: 76064305--76064336 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
76064295 CATGCCATAC
76064305 TAGCTCCAAAAT-ATAG
1 TAGCTCCAAAATGATAG
76064321 TAGC-CCAAAATGATAG
1 TAGCTCCAAAATGATAG
76064337 ATAGTGTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.22
Consensus pattern (17 bp):
TAGCTCCAAAATGATAG
Found at i:76065147 original size:39 final size:38
Alignment explanation
Indices: 76065094--76065219 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 38
76065084 GGACTTTAGC
* * *
76065094 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACC-TAAGT
*
76065133 CCGAATATAATTCCAGCACATAGCCTGCGGAGCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGA-CCTAAGT
*
76065172 TCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGA-CCTAAGT
76065211 CCGGATATA
1 CCGGATATA
76065220 CATCACTGAA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 76 0.97
40 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (38 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTAAGT
Found at i:76071160 original size:49 final size:49
Alignment explanation
Indices: 76071100--76071271 Score: 254
Period size: 49 Copynumber: 3.5 Consensus size: 49
76071090 CTGGTATGCA
*
76071100 TAGTGGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
* * * * *
76071149 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGGGTACACG
* *
76071200 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
76071249 TAGTAGCCTGCACTTAGTACTAC
1 TAGTAGCCTGCACTTAGTACTAC
76071272 TCACGTGACC
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
49 61 0.56
50 6 0.06
51 41 0.38
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
Found at i:76071227 original size:100 final size:100
Alignment explanation
Indices: 76071087--76071279 Score: 332
Period size: 100 Copynumber: 1.9 Consensus size: 100
76071077 TAGCCAAAGC
* * * * *
76071087 TATCTGGTATGCATAGTGGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
76071152 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
76071187 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
*
76071252 TAGCCTGCACTTAGTACTACTCACGTGA
66 TAGCCTGCACTTAGTACTACACACGTGA
76071280 CCTCACAATA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:76074453 original size:4 final size:4
Alignment explanation
Indices: 76074446--76074511 Score: 123
Period size: 4 Copynumber: 16.5 Consensus size: 4
76074436 TGCAACAATC
76074446 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
76074494 ATAT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT AT
76074512 TAAACTCGAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 60 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:76077565 original size:53 final size:53
Alignment explanation
Indices: 76077491--76077597 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
76077481 GCAAACAATG
76077491 ACTATTTCATAATTCTTCCATGGCCAACTATTTCATCATACATAATACAAACT
1 ACTATTTCATAATTCTTCCATGGCCAACTATTTCATCATACATAATACAAACT
76077544 ACTATTTCATAATTCTTCCATGGCCAACTATTTCATCATACATAATACAAACT
1 ACTATTTCATAATTCTTCCATGGCCAACTATTTCATCATACATAATACAAACT
76077597 A
1 A
76077598 TGGCCACCTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (53 bp):
ACTATTTCATAATTCTTCCATGGCCAACTATTTCATCATACATAATACAAACT
Found at i:76077579 original size:26 final size:26
Alignment explanation
Indices: 76077491--76077579 Score: 83
Period size: 26 Copynumber: 3.4 Consensus size: 26
76077481 GCAAACAATG
76077491 ACTATTTCATAATTCTTCCATGGCCA
1 ACTATTTCATAATTCTTCCATGGCCA
* * * ** *
76077517 ACTATTTCATCATACATAATACA--AACT
1 ACTATTTCATAATTC-T--TCCATGGCCA
76077544 ACTATTTCATAATTCTTCCATGGCCA
1 ACTATTTCATAATTCTTCCATGGCCA
76077570 ACTATTTCAT
1 ACTATTTCAT
76077580 CATACATAAT
Statistics
Matches: 46, Mismatches: 12, Indels: 10
0.68 0.18 0.15
Matches are distributed among these distances:
24 3 0.07
26 25 0.54
27 15 0.33
29 3 0.07
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (26 bp):
ACTATTTCATAATTCTTCCATGGCCA
Found at i:76078364 original size:29 final size:29
Alignment explanation
Indices: 76078333--76078463 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
76078323 ATTTAAGCCC
* ** *
76078333 GCACACATAGTGCCATACCTTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** * *
76078361 CGCACACCCAGTGCCGTAAATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
76078391 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
76078420 GCACACTTAGTGCCATATATTTCTAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76078449 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76078464 ATCTCATCAC
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76082700 original size:46 final size:46
Alignment explanation
Indices: 76082648--76082829 Score: 183
Period size: 46 Copynumber: 3.9 Consensus size: 46
76082638 TGTAGCCCGC
* * * *
76082648 CCATAAGTGAACTCGGACTCAAATCAACAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
* *
76082694 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGAATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCACAT
* * *
76082744 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
* * *
76082787 CCATAAGTGAACTCGGACTCAACTCAATGAGTTTGGATGTTCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCA
76082830 AATATCCAAA
Statistics
Matches: 111, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.57
47 27 0.24
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
Found at i:76085634 original size:24 final size:24
Alignment explanation
Indices: 76085605--76085687 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
76085595 CTATCTGGAG
* *
76085605 CTTCCTGTTATGGTTCTTTATGAG
1 CTTCCCGTTATGGTTCTTTATGAA
* * *
76085629 CTTCCTGATAAGGTTCTTTGA-GAA
1 CTTCCCGTTATGGTTCTTT-ATGAA
*
76085653 CTTCCCGATTATGGCTC-TTATGAA
1 CTTCCCG-TTATGGTTCTTTATGAA
76085677 CTTCCCGTTAT
1 CTTCCCGTTAT
76085688 ATAGCCCGGA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.10
24 37 0.76
25 7 0.14
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (24 bp):
CTTCCCGTTATGGTTCTTTATGAA
Found at i:76090090 original size:10 final size:11
Alignment explanation
Indices: 76090066--76090111 Score: 51
Period size: 10 Copynumber: 4.2 Consensus size: 11
76090056 GAAAAAGTGC
76090066 AGAGAAAACTA
1 AGAGAAAACTA
*
76090077 AGAGAAACCT-
1 AGAGAAAACTA
76090087 AGAGAAAACTA
1 AGAGAAAACTA
76090098 A-ACTGAAAACTA
1 AGA--GAAAACTA
76090110 AG
1 AG
76090112 CTAAGGTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 10 0.34
11 10 0.34
12 9 0.31
ACGTcount: A:0.59, C:0.13, G:0.17, T:0.11
Consensus pattern (11 bp):
AGAGAAAACTA
Found at i:76090130 original size:33 final size:33
Alignment explanation
Indices: 76090093--76090158 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
76090083 ACCTAGAGAA
76090093 AACTAAACTGAAAACTAAGCTAAGGTGTGTATC
1 AACTAAACTGAAAACTAAGCTAAGGTGTGTATC
*
76090126 AACTAAACTGAAAACTAAGCTAATGTGTGTATC
1 AACTAAACTGAAAACTAAGCTAAGGTGTGTATC
76090159 TCTCCTACTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (33 bp):
AACTAAACTGAAAACTAAGCTAAGGTGTGTATC
Found at i:76090517 original size:20 final size:20
Alignment explanation
Indices: 76090492--76090546 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
76090482 CTTGGGAGGT
76090492 GGATATCGTGATACCCAAAG
1 GGATATCGTGATACCCAAAG
76090512 GGATATCGTGATACCCAAAG
1 GGATATCGTGATACCCAAAG
*
76090532 GGATATCGTAATACC
1 GGATATCGTGATACC
76090547 ACTAAAGGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (20 bp):
GGATATCGTGATACCCAAAG
Found at i:76092664 original size:29 final size:29
Alignment explanation
Indices: 76092602--76092704 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
76092592 GTGACGAGAT
* * *
76092602 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
76092631 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
76092660 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
76092689 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76092705 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:76094544 original size:12 final size:13
Alignment explanation
Indices: 76094525--76094557 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
76094515 TATTTTTATT
*
76094525 AATAAAAAAATAA
1 AATAAAATAATAA
76094538 AATAAAATAA-AA
1 AATAAAATAATAA
76094550 AATAAAAT
1 AATAAAAT
76094558 TTAAAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
AATAAAATAATAA
Found at i:76096463 original size:40 final size:40
Alignment explanation
Indices: 76096397--76096563 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76096387 AAATTGAATG
* * *
76096397 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76096436 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76096476 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76096516 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76096556 ATATCCGG
1 ATATCCGG
76096564 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76101167 original size:40 final size:39
Alignment explanation
Indices: 76101065--76101246 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
76101055 AAATTGAATG
* * * * * *
76101065 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGT
*
76101105 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAG-T
* *
76101145 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGT
* * * *
76101184 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGT
* * *
76101222 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
76101247 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 32 0.26
39 7 0.06
40 82 0.68
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGT
Found at i:76104273 original size:40 final size:40
Alignment explanation
Indices: 76104207--76104373 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76104197 AAATTGAATG
* * *
76104207 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76104246 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76104286 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76104326 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76104366 ATATCCGG
1 ATATCCGG
76104374 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76112211 original size:40 final size:40
Alignment explanation
Indices: 76112145--76112311 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76112135 AAATTGAATG
* * *
76112145 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76112184 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76112224 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76112264 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76112304 ATATCCGG
1 ATATCCGG
76112312 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76116720 original size:20 final size:20
Alignment explanation
Indices: 76116695--76116732 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76116685 GTAACATATA
76116695 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
76116715 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
76116733 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:76118648 original size:24 final size:23
Alignment explanation
Indices: 76118614--76118665 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
76118604 TGAATTGGAA
*
76118614 AAAGTCGAAATACCGAAAAGCTG
1 AAAGTCAAAATACCGAAAAGCTG
*
76118637 AGAAGTCAAAATGCCGAAAAGCTG
1 A-AAGTCAAAATACCGAAAAGCTG
76118661 AAAGT
1 AAAGT
76118666 TGGGATACGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.48, C:0.15, G:0.23, T:0.13
Consensus pattern (23 bp):
AAAGTCAAAATACCGAAAAGCTG
Found at i:76118951 original size:29 final size:29
Alignment explanation
Indices: 76118887--76118993 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 29
76118877 ATAATATGAT
* *
76118887 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATATAAA
* * *
76118916 TTTGGCCTAGTGGGCCATAAGAATATAAA
1 TTGGGCCTAATGGGCCATATGAATATAAA
* * * * *
76118945 CTGGGCCAAATGGGCCGTTTGAATA-AGA
1 TTGGGCCTAATGGGCCATATGAATATAAA
* *
76118973 TTGGGCCTAGTGGCCCATATG
1 TTGGGCCTAATGGGCCATATG
76118994 CATGTATGTA
Statistics
Matches: 59, Mismatches: 19, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
28 17 0.29
29 42 0.71
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATAAA
Found at i:76120024 original size:21 final size:20
Alignment explanation
Indices: 76119986--76120034 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
76119976 TCGTAACTGA
*
76119986 AAGGTTTT-TTTTAGTTAAT
1 AAGGTTTTCTTTTAGTTAAG
* *
76120005 TAGGTTTTCTTTTATTTTAAG
1 AAGGTTTTCTTTTA-GTTAAG
76120026 AAGGTTTTC
1 AAGGTTTTC
76120035 AATGAAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 7 0.29
20 5 0.21
21 12 0.50
ACGTcount: A:0.22, C:0.04, G:0.16, T:0.57
Consensus pattern (20 bp):
AAGGTTTTCTTTTAGTTAAG
Found at i:76127930 original size:37 final size:37
Alignment explanation
Indices: 76127867--76128011 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
76127857 TAGCTCGAAT
* * *
76127867 AATCCCCACACGTAGTTATCGAGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
76127904 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
76127941 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
76127978 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76128012 ATATATTTCC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:76128204 original size:48 final size:48
Alignment explanation
Indices: 76128144--76128341 Score: 310
Period size: 48 Copynumber: 4.1 Consensus size: 48
76128134 CGGCCACAAT
*
76128144 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
76128192 ATATACATATCTCATACATATTTCACATTAGCCATTCAGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
76128240 ATATATATATATCTCATACATA-TTC-CATGCTAGCCATTCGGCTTTACCAC
1 --ATATACATATCTCATACATATTTCACAT--TAGCCATTCGGCTTTACCAC
76128290 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
76128338 ATAT
1 ATAT
76128342 TTCATATTAG
Statistics
Matches: 137, Mismatches: 7, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
48 91 0.66
49 6 0.04
50 40 0.29
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:76128255 original size:98 final size:97
Alignment explanation
Indices: 76128137--76128341 Score: 331
Period size: 98 Copynumber: 2.1 Consensus size: 97
76128127 GGTCATTCGG
76128137 CCACAATATATACACATCTCATACATATTTCACAT-TAGCCATTCGGCTTTACCACATATACATA
1 CCAC-ATATATACACATCTCATACATA-TTC-CATCTAGCCATTCGGCTTTACCACATATACATA
76128201 TCTCATACATATTTCACATTAGCCATTCAGATTTA
63 TCTCATACATATTTCACATTAGCCATTCAGATTTA
* *
76128236 CCACATATATATATATCTCATACATATTCCATGCTAGCCATTCGGCTTTACCACATATACATATC
1 CCACATATATACACATCTCATACATATTCCAT-CTAGCCATTCGGCTTTACCACATATACATATC
* *
76128301 TCATACATATTTCACATTAGCCATTCGGCTTTA
65 TCATACATATTTCACATTAGCCATTCAGATTTA
76128334 CCACATAT
1 CCACATAT
76128342 TTCATATTAG
Statistics
Matches: 100, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
96 3 0.03
97 3 0.03
98 90 0.90
99 4 0.04
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (97 bp):
CCACATATATACACATCTCATACATATTCCATCTAGCCATTCGGCTTTACCACATATACATATCT
CATACATATTTCACATTAGCCATTCAGATTTA
Found at i:76128343 original size:31 final size:31
Alignment explanation
Indices: 76128305--76128372 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
76128295 CATATCTCAT
76128305 ACATATTTCACATTAGCCATTCGGCTTTACC
1 ACATATTTCACATTAGCCATTCGGCTTTACC
*
76128336 ACATATTTCATATTAGCCATTCGGCTTTACC
1 ACATATTTCACATTAGCCATTCGGCTTTACC
76128367 ACATAT
1 ACATAT
76128373 ACATATCTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (31 bp):
ACATATTTCACATTAGCCATTCGGCTTTACC
Found at i:76128358 original size:79 final size:79
Alignment explanation
Indices: 76128270--76128417 Score: 287
Period size: 79 Copynumber: 1.9 Consensus size: 79
76128260 TATTCCATGC
*
76128270 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
76128335 CACATATTTCATAT
66 CACATATTTCATAT
76128349 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
76128414 CACA
66 CACA
76128418 CACATATATA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (79 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
CACATATTTCATAT
Found at i:76132047 original size:12 final size:12
Alignment explanation
Indices: 76132023--76132097 Score: 55
Period size: 12 Copynumber: 6.2 Consensus size: 12
76132013 AAGAAACATT
76132023 ATCAAAA-CAAGA
1 ATCAAAATC-AGA
*
76132035 ATCAAAATGAGA
1 ATCAAAATCAGA
*
76132047 ATCAGAATCAGA
1 ATCAAAATCAGA
**
76132059 ATCAGGTGAT-AGA
1 ATCA--AAATCAGA
*
76132072 ATCAGAATCAGA
1 ATCAAAATCAGA
*
76132084 ATCAGAATCAGA
1 ATCAAAATCAGA
76132096 AT
1 AT
76132098 TAGGTGACAG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
11 2 0.04
12 41 0.79
13 7 0.13
14 2 0.04
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (12 bp):
ATCAAAATCAGA
Found at i:76132055 original size:6 final size:6
Alignment explanation
Indices: 76132032--76132147 Score: 94
Period size: 6 Copynumber: 18.8 Consensus size: 6
76132022 TATCAAAACA
* * *
76132032 AGAATC AAAATG AGAATC AGAATC AGAATC AGGTGAT- AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
76132081 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC
*
76132131 AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAAT
76132148 GTGAATGCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.06
6 71 0.82
7 7 0.08
8 4 0.05
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:76132073 original size:37 final size:37
Alignment explanation
Indices: 76132032--76132125 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
76132022 TATCAAAACA
* *
76132032 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* *
76132069 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* *
76132106 AGAATCAGAATCAGTATCAG
1 AGAATCAAAATCAGAATCAG
76132126 GTAACAGAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:76132082 original size:31 final size:31
Alignment explanation
Indices: 76132044--76132147 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
76132034 AATCAAAATG
*
76132044 AGAATCAGAATCAGAATCAGGTGATAGAATC
1 AGAATCAGAATCAGAATCAGGTAATAGAATC
*
76132075 AGAATCAGAATCAGAATCA-G-AATTAG-GTGAC
1 AGAATCAGAATCAGAATCAGGTAA-TAGAAT--C
* *
76132106 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAATAGAATC
*
76132137 AAAATCAGAAT
1 AGAATCAGAAT
76132148 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
29 2 0.03
30 4 0.07
31 49 0.80
32 3 0.05
33 3 0.05
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAATAGAATC
Found at i:76132108 original size:25 final size:25
Alignment explanation
Indices: 76132080--76132147 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
76132070 GAATCAGAAT
* *
76132080 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
76132105 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
76132130 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
76132148 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:76132333 original size:27 final size:27
Alignment explanation
Indices: 76132289--76132379 Score: 130
Period size: 27 Copynumber: 3.3 Consensus size: 27
76132279 GTGATAGAGT
* *
76132289 ACCAGATATAGATA-TTGTGGCAGAGCC
1 ACCAGA-ACAGATATTTGTGGCATAGCC
76132316 ACCAGAACAGATATTTGTGGCATAGCC
1 ACCAGAACAGATATTTGTGGCATAGCC
76132343 ACCAGAAACAGATATTTGTGGCATAGCC
1 ACCAG-AACAGATATTTGTGGCATAGCC
*
76132371 ACTAGAACA
1 ACCAGAACA
76132380 CTTCCTCCAT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 6 0.10
27 27 0.46
28 26 0.44
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
ACCAGAACAGATATTTGTGGCATAGCC
Found at i:76132361 original size:28 final size:28
Alignment explanation
Indices: 76132289--76132377 Score: 128
Period size: 28 Copynumber: 3.2 Consensus size: 28
76132279 GTGATAGAGT
* * *
76132289 ACCAGATATAGATA-TTGTGGCAGAGCC
1 ACCAGAAACAGATATTTGTGGCATAGCC
76132316 ACCAG-AACAGATATTTGTGGCATAGCC
1 ACCAGAAACAGATATTTGTGGCATAGCC
76132343 ACCAGAAACAGATATTTGTGGCATAGCC
1 ACCAGAAACAGATATTTGTGGCATAGCC
*
76132371 ACTAGAA
1 ACCAGAA
76132378 CACTTCCTCC
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 6 0.11
27 22 0.39
28 28 0.50
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (28 bp):
ACCAGAAACAGATATTTGTGGCATAGCC
Found at i:76132628 original size:27 final size:26
Alignment explanation
Indices: 76132581--76132768 Score: 182
Period size: 27 Copynumber: 7.0 Consensus size: 26
76132571 GGGAAAAATG
* * *
76132581 GTAATTTTACCAC-ACAAGGGTATCTC
1 GTAATTCTACC-CTACAGGGGTATTTC
76132607 GTTAATTCTACCCTACAGGGGTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
* * *
76132634 GGTATTTCTACCCGAC-GAGGGTATTTTG
1 -GTAATTCTACCCTACAG-GGGTA-TTTC
* *
76132662 GTAATGCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTA-TTTC
* *
76132689 GTAATTCTACCATACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTA-TTTC
76132716 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
* *
76132742 AATAATTCTACCCTACAGAGGTATTTC
1 -GTAATTCTACCCTACAGGGGTATTTC
76132769 AATCATTTTG
Statistics
Matches: 139, Mismatches: 16, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
26 6 0.04
27 128 0.92
28 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (26 bp):
GTAATTCTACCCTACAGGGGTATTTC
Found at i:76132771 original size:27 final size:27
Alignment explanation
Indices: 76132609--76132769 Score: 207
Period size: 27 Copynumber: 6.0 Consensus size: 27
76132599 GGTATCTCGT
*
76132609 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * **
76132636 TATTTCTACCCGAC-GAGGGTATTTTGG
1 TAATTCTACCCTACAG-GGGTATTTCAG
* *
76132663 TAATGCTACCCTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
76132690 TAATTCTACCATACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
76132717 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
*
76132744 TAATTCTACCCTACAGAGGTATTTCA
1 TAATTCTACCCTACAGGGGTATTTCA
76132770 ATCATTTTGT
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 117 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:76133046 original size:17 final size:19
Alignment explanation
Indices: 76133024--76133066 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
76133014 TATCCAATTG
76133024 GGCCCATA-GGCCC-ATTA
1 GGCCCATATGGCCCTATTA
* *
76133041 GGCCCACATGGCCCTTTTA
1 GGCCCATATGGCCCTATTA
76133060 GGCCCAT
1 GGCCCAT
76133067 CGCGGCCCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 5 0.24
19 9 0.43
ACGTcount: A:0.19, C:0.37, G:0.23, T:0.21
Consensus pattern (19 bp):
GGCCCATATGGCCCTATTA
Found at i:76134559 original size:22 final size:20
Alignment explanation
Indices: 76134529--76134578 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
76134519 TACACCACAC
* *
76134529 CAGAAGCATCAAAGATGCATAA
1 CAGAGGCATCAAAG-TG-AAAA
*
76134551 CAGAGGCATCGAAGTGAAAA
1 CAGAGGCATCAAAGTGAAAA
76134571 CAGAGGCA
1 CAGAGGCA
76134579 CGGATGTGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 11 0.44
21 2 0.08
22 12 0.48
ACGTcount: A:0.46, C:0.18, G:0.26, T:0.10
Consensus pattern (20 bp):
CAGAGGCATCAAAGTGAAAA
Found at i:76135042 original size:17 final size:19
Alignment explanation
Indices: 76135022--76135058 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
76135012 TAGGGACTAC
76135022 TCCACAATT-TT-TCTTTT
1 TCCACAATTATTGTCTTTT
*
76135039 TCCACGATTATTGTCTTTT
1 TCCACAATTATTGTCTTTT
76135058 T
1 T
76135059 GATTCAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 2 0.12
19 7 0.41
ACGTcount: A:0.16, C:0.22, G:0.05, T:0.57
Consensus pattern (19 bp):
TCCACAATTATTGTCTTTT
Found at i:76142223 original size:54 final size:54
Alignment explanation
Indices: 76142046--76142234 Score: 170
Period size: 55 Copynumber: 3.5 Consensus size: 54
76142036 ATTGCTATGT
* * * * * * * * *
76142046 CTTGACATGGTCTTACGTGGTATCATTGTCTTAT-GAACTCACCAATGTCAAGC
1 CTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAATGCCATGC
* * * *
76142099 CTTGGCATGGTCTTACATGGGACTT--TTGCCTTATAGTAACTCATCAATACTATGT
1 CTTGGCATGGTCTTACAT--GATTTCCTTGCCTTATAG-AACTCATCAATGCCATGC
* *
76142154 CTTGACATGGTCTTACATGATTTCCTTGCCTTATA-AGACTTATCAATGCCATGC
1 CTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGA-ACTCATCAATGCCATGC
*
76142208 CTTGGCATGGTCTTACATGATATCCTT
1 CTTGGCATGGTCTTACATGATTTCCTT
76142235 ATCTTACCAA
Statistics
Matches: 109, Mismatches: 20, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
53 29 0.27
54 39 0.36
55 41 0.38
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAATGCCATGC
Found at i:76142268 original size:47 final size:47
Alignment explanation
Indices: 76142213--76142334 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
76142203 CATGCCTTGG
* *
76142213 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
76142260 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
76142307 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
76142335 GTGCCAATGC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:76145257 original size:40 final size:39
Alignment explanation
Indices: 76145212--76145419 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
76145202 CGGAATACAA
*
76145212 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76145252 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76145292 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
76145332 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
76145372 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
76145412 CCGGATAT
1 CCGGATAT
76145420 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76145352 original size:80 final size:80
Alignment explanation
Indices: 76145212--76145418 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
76145202 CGGAATACAA
* * *
76145212 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
76145276 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
76145292 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
76145356 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
76145372 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
76145419 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:76153297 original size:40 final size:39
Alignment explanation
Indices: 76153252--76153459 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
76153242 CGGAATACAA
*
76153252 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76153292 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76153332 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
76153372 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
76153412 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
76153452 CCGGATAT
1 CCGGATAT
76153460 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76153392 original size:80 final size:80
Alignment explanation
Indices: 76153252--76153458 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
76153242 CGGAATACAA
* * *
76153252 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
76153316 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
76153332 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
76153396 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
76153412 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
76153459 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:76157877 original size:133 final size:133
Alignment explanation
Indices: 76157639--76158088 Score: 684
Period size: 133 Copynumber: 3.4 Consensus size: 133
76157629 TTGTGACTTT
* * * * * ** *
76157639 GATCTGCTCGACTGCAACTTCAGGGAAATAAGATCTACAATCTTTAGTTTACCCCACTACAACTT
1 GATCTACTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
* ** * *
76157704 TAGGGAAATAGGGCGGTGACTTAAATCTTCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTC
66 TAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTC
76157769 TTC
131 TTC
* * **
76157772 GATCTGCTCCACTGTAACTTTGGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
1 GATCTACTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
* *
76157837 TAGGCAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGAAAAGATTCGCCGTC
66 TAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTC
76157902 TTC
131 TTC
* * *
76157905 GATCTACTTCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCGGCCTACTCCACTAAAACTT
1 GATCTACTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
*
76157970 TAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCACCGTC
66 TAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTC
76158035 TTC
131 TTC
*
76158038 GATCTACTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAACCTA
1 GATCTACTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTA
76158089 TTACCCTACT
Statistics
Matches: 287, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 287 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (133 bp):
GATCTACTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
TAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAAGATTCGCCGTC
TTC
Found at i:76157916 original size:45 final size:44
Alignment explanation
Indices: 76157736--76158072 Score: 212
Period size: 45 Copynumber: 7.6 Consensus size: 44
76157726 AAATCTTCTT
* *
76157736 CACTGCAACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTC
1 CACTGCAACTTCAGGGAGACAAGA-TCGCCGTCTTCGATCTACTC
* ** * ** *
76157781 CACTGTAACTTTGGGGAGACAAGATCTACAATCTTC-AGCCTACTC
1 CACTGCAACTTCAGGGAGACAAGATC-GCCGTCTTCGA-TCTACTC
* * * * * ** * ** * *
76157826 CACTACAACTTTAGGCAGATAGGAT-GGTGGCTTAAATCTGCTT
1 CACTGCAACTTCAGGGAGACAAGATCGCCGTCTTCGATCTACTC
* * *
76157869 CACTGCAACTTCAGGAAGAAAAGATTCGCCGTCTTCGATCTACTT
1 CACTGCAACTTCAGGGAGACAAGA-TCGCCGTCTTCGATCTACTC
* ** **
76157914 CACTGCAACTTCAGGGAGACAAGATCTACAATCTTCGGCCTACTC
1 CACTGCAACTTCAGGGAGACAAGATC-GCCGTCTTCGATCTACTC
** * * * ** * ** * *
76157959 CACTAAAACTTTAGGGAGATAGGAT-GGTGGCTTAAATCTGCTT
1 CACTGCAACTTCAGGGAGACAAGATCGCCGTCTTCGATCTACTC
* *
76158002 CACTGCAACTTCAGGAAGACAAGATTCACCGTCTTCGATCTACTC
1 CACTGCAACTTCAGGGAGACAAGA-TCGCCGTCTTCGATCTACTC
76158047 CACTGCAACTTCAGGGAGACAAGATC
1 CACTGCAACTTCAGGGAGACAAGATC
76158073 TACAATCTTC
Statistics
Matches: 210, Mismatches: 74, Indels: 17
0.70 0.25 0.06
Matches are distributed among these distances:
43 51 0.24
44 10 0.05
45 149 0.71
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (44 bp):
CACTGCAACTTCAGGGAGACAAGATCGCCGTCTTCGATCTACTC
Found at i:76165361 original size:40 final size:40
Alignment explanation
Indices: 76165287--76165409 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 40
76165277 GATAACCAGA
* ** * * *
76165287 CTAAGATCCGAAGGCATTCGTGCAAGGTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGG
* * *
76165327 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTATGCGAGTTG-TTATATCCGGG
*
76165367 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGG
76165406 CTAA
1 CTAA
76165410 ATCCCAAAGA
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
39 8 0.11
40 60 0.86
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGG
Found at i:76165686 original size:22 final size:22
Alignment explanation
Indices: 76165646--76165687 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
76165636 GAATGTGCAT
*
76165646 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
76165668 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
76165688 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:76172244 original size:40 final size:40
Alignment explanation
Indices: 76172170--76172310 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
76172160 TATTCGAATG
76172170 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
76172209 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
76172249 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
76172289 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
76172311 TACTTGAGTT
Statistics
Matches: 95, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
39 29 0.31
40 64 0.67
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:76180249 original size:39 final size:39
Alignment explanation
Indices: 76180140--76180279 Score: 212
Period size: 40 Copynumber: 3.6 Consensus size: 39
76180130 TATTCGAATG
76180140 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
76180179 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
76180219 ATATCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
76180258 ATATCCGGCTAAATCCCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
76180280 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
38 6 0.06
39 39 0.41
40 49 0.52
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:76184089 original size:126 final size:127
Alignment explanation
Indices: 76183958--76184259 Score: 294
Period size: 129 Copynumber: 2.4 Consensus size: 127
76183948 CCCAGCATAG
* * * * * *
76183958 TAGGGCACGATT-CTCAAATTTCTAAACATAGAACATTGCATT-ATTTT-AGGATTTAGAGGATA
1 TAGGGCACGATTCCT-AAATTGCCAAACATAGAACATTACATTCATTTTAAGAATTTAGA-AAGA
*
76184020 TGA-GTGAAATTCTAAAGGTATATTCGATTATTTT-AACCAAATAG-GAAATTGCAACCCAGCAC
64 TGAGGTGAAATTCTAAAGGGATATTCGATTATTTTGAA-CAAA-AGAGAAATTGCAA-CCAGCAC
76184082 GA
126 GA
* * * * **
76184084 TAGGGCACGATTCCTGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAAGAT
1 TAGGGCACGATTCCTAAATTGCCAAACATAGAACATTACATTCATTTT-AAGAATTTAGAAAGAT
* * *
76184149 GAGGTGAAATTCTAAAGGGATGTTCGATTGTTTTGAACAAACGAGAAATTGCAACCAGCACGA
65 GAGGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAAAGAGAAATTGCAACCAGCACGA
* * * * * *
76184212 TTGGGCACGATTCCCTGAA-TGCCAAACATCGAAGATTGCCTTCATTTT
1 TAGGGCACGATT-CCTAAATTGCCAAACATAGAACATTACATTCATTTT
76184260 TAATTTTTTT
Statistics
Matches: 148, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
126 33 0.22
127 6 0.04
128 52 0.35
129 55 0.37
130 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (127 bp):
TAGGGCACGATTCCTAAATTGCCAAACATAGAACATTACATTCATTTTAAGAATTTAGAAAGATG
AGGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAAAGAGAAATTGCAACCAGCACGA
Found at i:76184270 original size:128 final size:128
Alignment explanation
Indices: 76184019--76184259 Score: 346
Period size: 128 Copynumber: 1.9 Consensus size: 128
76184009 TTTAGAGGAT
* *
76184019 ATGAGTGAAATTCTAAAGGTATATTCGATTATTTTAACCAAATAGGAAATTGCAACCCAGCACGA
1 ATGAGTGAAATTCTAAAGGGATATTCGATTATTTTAACCAAAGAGGAAATTGCAACCCAGCACGA
*
76184084 TAGGGCACGATTCCTGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAAG
66 TAGGGCACGATTCCTGAATTGCCAAACATCGAACATTACCTTCATTTTGAAGAATTTTTAAAG
* *
76184147 ATGAGGTGAAATTCTAAAGGGATGTTCGATTGTTTTGAA-CAAACGA-GAAATTGCAA-CCAGCA
1 ATGA-GTGAAATTCTAAAGGGATATTCGATTATTTT-AACCAAA-GAGGAAATTGCAACCCAGCA
* * *
76184209 CGATTGGGCACGATTCCCTGAA-TGCCAAACATCGAAGATTGCCTTCATTTT
63 CGATAGGGCACGATT-CCTGAATTGCCAAACATCGAACATTACCTTCATTTT
76184260 TAATTTTTTT
Statistics
Matches: 101, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
128 50 0.50
129 48 0.48
130 3 0.03
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (128 bp):
ATGAGTGAAATTCTAAAGGGATATTCGATTATTTTAACCAAAGAGGAAATTGCAACCCAGCACGA
TAGGGCACGATTCCTGAATTGCCAAACATCGAACATTACCTTCATTTTGAAGAATTTTTAAAG
Found at i:76190095 original size:10 final size:10
Alignment explanation
Indices: 76190080--76190106 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
76190070 TGAAACGGTA
76190080 TTGGGCCAAT
1 TTGGGCCAAT
76190090 TTGGGCCAAT
1 TTGGGCCAAT
76190100 TTGGGCC
1 TTGGGCC
76190107 GTTTAGGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.22, G:0.33, T:0.30
Consensus pattern (10 bp):
TTGGGCCAAT
Found at i:76197778 original size:24 final size:23
Alignment explanation
Indices: 76197746--76197794 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
76197736 GTGAAATTGC
76197746 AAAGGCTGAAAAGCCAAAAAGCCG
1 AAAGGCTGAAAAGCCAAAAA-CCG
* *
76197770 AAAGGCTGAAAGGTCAAAAACCG
1 AAAGGCTGAAAAGCCAAAAACCG
76197793 AA
1 AA
76197795 GAGTGCATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.51, C:0.18, G:0.24, T:0.06
Consensus pattern (23 bp):
AAAGGCTGAAAAGCCAAAAACCG
Found at i:76202107 original size:93 final size:93
Alignment explanation
Indices: 76202001--76202171 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
76201991 GCCCCTAAGT
* * ** * * *
76202001 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCATCCATAAGTGAACTTGAACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
76202066 CGAGTTCGGATGCCTAGTTACATCTCAA
66 CGAGTTCGGATGCCTAGTTACATCTCAA
* * *
76202094 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
76202159 CGAGTTCGGATGC
66 CGAGTTCGGATGC
76202172 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAA
Found at i:76202159 original size:46 final size:44
Alignment explanation
Indices: 76201994--76202166 Score: 145
Period size: 46 Copynumber: 3.8 Consensus size: 44
76201984 GTAACCCGCC
* * ** *
76201994 CCTAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAAC-ATTGCAT
* * * *
76202039 CCATAAGTGAACTTGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTGCAT
*
76202089 -CTCAA--GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCT-AAGTGAACTCGGACTCAACTCAACGAGTTCGAACATT-GCAT
76202132 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
76202167 GATGCTCAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 4 0.04
45 3 0.03
46 55 0.54
47 24 0.24
48 1 0.01
49 4 0.04
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (44 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTGCAT
Done.