Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 257 of 328
Found at i:76574248 original size:9 final size:8
Alignment explanation
Indices: 76574186--76574256 Score: 51
Period size: 8 Copynumber: 8.9 Consensus size: 8
76574176 ATATTAGATA
76574186 TTAAATTT
1 TTAAATTT
*
76574194 TTAAGTTT
1 TTAAATTT
76574202 TT--ATTT
1 TTAAATTT
*
76574208 TT-TATTT
1 TTAAATTT
76574215 TTAAA-TT
1 TTAAATTT
*
76574222 TTAATTTTT
1 TTAA-ATTT
76574231 TTGAAAATTT
1 TT--AAATTT
76574241 TTATAATTT
1 TTA-AATTT
76574250 TTAAATT
1 TTAAATT
76574257 AACATATAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
6 5 0.10
7 12 0.24
8 15 0.29
9 12 0.24
10 5 0.10
11 2 0.04
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (8 bp):
TTAAATTT
Found at i:76575646 original size:40 final size:41
Alignment explanation
Indices: 76575463--76575655 Score: 280
Period size: 41 Copynumber: 4.7 Consensus size: 41
76575453 CTATATGACT
* * * *
76575463 TTTAGCTGCGTTTTATCAAAAGCGCCACTAATGCTCTAGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
*
76575504 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCACTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
*
76575545 TTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* *
76575586 TTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCT-GTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* **
76575626 TTTAGCGGCGTTTTAACAAAAAAGCCGCTA
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTA
76575656 TTACTCTATT
Statistics
Matches: 139, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 29 0.21
41 110 0.79
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:76575668 original size:40 final size:40
Alignment explanation
Indices: 76575463--76575679 Score: 272
Period size: 41 Copynumber: 5.3 Consensus size: 40
76575453 CTATATGACT
* * *
76575463 TTTAGCTGCGTTTTATCAAAAGCGCCACTAATGCTCTAGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTC
*
76575504 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCACTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTC
*
76575545 TTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTC
* *
76575586 TTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTC
* ** * * * *
76575626 TTTAGCGGCGTTTTAACAAAAAAGCCGCTATTACTCTATT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTC
*
76575666 TTTAGTGGCGTTTT
1 TTTAGCGGCGTTTT
76575680 TGTTAAAACG
Statistics
Matches: 159, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
40 49 0.31
41 110 0.69
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.34
Consensus pattern (40 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTC
Found at i:76578200 original size:29 final size:29
Alignment explanation
Indices: 76578167--76578298 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
76578157 GTGACGAGAT
*
76578167 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
76578196 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
76578225 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
76578254 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
76578283 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76578299 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:76586076 original size:29 final size:29
Alignment explanation
Indices: 76586043--76586116 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76586033 GTGACGAGAT
76586043 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76586072 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76586101 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76586117 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76586132 original size:29 final size:29
Alignment explanation
Indices: 76586100--76586175 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
76586090 CTGGAAATAT
* *
76586100 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
76586129 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
76586158 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
76586176 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:76586143 original size:58 final size:58
Alignment explanation
Indices: 76586043--76586175 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
76586033 GTGACGAGAT
* * * * * *
76586043 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
76586101 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
76586159 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
76586176 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:76592205 original size:28 final size:28
Alignment explanation
Indices: 76592165--76592237 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
76592155 CGGTGACGAG
76592165 ATTGG-ACTAAGTGTGCGTGCTGGAAAT
1 ATTGGCACTAAGTGTGCGTGCTGGAAAT
*
76592192 ATTGGCACTAAGTGTGCATGCTGGAAAT
1 ATTGGCACTAAGTGTGCGTGCTGGAAAT
76592220 ATATGGCAC-AAGTGTGCG
1 AT-TGGCACTAAGTGTGCG
76592238 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
27 5 0.12
28 31 0.74
29 6 0.14
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (28 bp):
ATTGGCACTAAGTGTGCGTGCTGGAAAT
Found at i:76600072 original size:29 final size:29
Alignment explanation
Indices: 76600039--76600112 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
76600029 GTGACGAGAT
76600039 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76600068 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76600097 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76600113 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76600128 original size:29 final size:29
Alignment explanation
Indices: 76600096--76600170 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
76600086 CTGGAAATAT
* *
76600096 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
76600125 ATGGCACT-TGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
76600153 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
76600171 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 22 0.59
29 15 0.41
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.23
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:76602958 original size:45 final size:45
Alignment explanation
Indices: 76602860--76602986 Score: 131
Period size: 45 Copynumber: 2.9 Consensus size: 45
76602850 TTTTCTCAAA
* * *
76602860 TCACCGGCATT-TCA-CTTGCTAGGCTCG-AGGGCC-AATATCATT
1 TCACCGGCATTAT-AGCCTGCTAGGCTCGAAAGGCCGAATATCATC
76602902 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCGAATAGT-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCGAATA-TCATC
* **
76602947 TCACCGGCATTATAGTCTGCTAAACTC-AAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGG-CCGAATA
76602987 ATCAAATCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
42 12 0.16
43 13 0.18
44 10 0.14
45 37 0.51
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCGAATATCATC
Found at i:76603373 original size:43 final size:43
Alignment explanation
Indices: 76603312--76603466 Score: 256
Period size: 43 Copynumber: 3.6 Consensus size: 43
76603302 CCGGCATTAT
* *
76603312 GCCTGCTAGGCACGAAGGCCCGCATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
76603355 GCCTGCTAGGCACGAAGGCACGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
76603398 GCCTGCTAGGCATGAAGGCCCGAATACATATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
76603441 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
76603467 TAATACCAGC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:76603502 original size:38 final size:38
Alignment explanation
Indices: 76603459--76603566 Score: 139
Period size: 38 Copynumber: 2.8 Consensus size: 38
76603449 GGCACGAAGG
*
76603459 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACTAAGCCTGCGGGATTTAA
* * *
76603497 CCCGAATATATTACCAGCACGAAGCCGGCGGGATTTAA
1 CCCGAATATAATACCAGCACTAAGCCTGCGGGATTTAA
*
76603535 CCC-AGATATAATTCCAGCA-TATAGCCTGCGGG
1 CCCGA-ATATAATACCAGCACTA-AGCCTGCGGG
76603567 TCTTTAGGCC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
37 2 0.03
38 58 0.97
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACTAAGCCTGCGGGATTTAA
Found at i:76607003 original size:46 final size:46
Alignment explanation
Indices: 76606810--76607031 Score: 229
Period size: 47 Copynumber: 4.8 Consensus size: 46
76606800 GGTTATTGTG
* *
76606810 AGCTAGTGTAAGACATGTCTGGGATAT-GCATCGGTCACATT-ACGA-G-
1 AGCTAGTGTAAGACATGTTTGGGACATGGCATCGG---CATTGA-GATGA
* *
76606856 AGCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCATTGAGATGA
1 AGCTAGTGTAAGA-CATGTTTGGGACATGGCATCGGCATTGAGATGA
* * *
76606903 GAGCTAGTGTAAGACATGTTTGGGATATGGCATCGGCATTAAGACGAA
1 -AGCTAGTGTAAGACATGTTTGGGACATGGCATCGGCATTGAGATG-A
* * *
76606951 AGCTAGTGTAAGACATGTTTGGGACAT-GCATCAGCCTCGAGATGTA
1 AGCTAGTGTAAGACATGTTTGGGACATGGCATCGGCATTGAGATG-A
* *
76606997 AGCTAGTGTAAGACATGTCTGAGACATGGCATCGG
1 AGCTAGTGTAAGACATGTTTGGGACATGGCATCGG
76607032 TATCCTACTC
Statistics
Matches: 153, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
45 6 0.04
46 52 0.34
47 75 0.49
48 20 0.13
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTTTGGGACATGGCATCGGCATTGAGATGA
Found at i:76607026 original size:93 final size:95
Alignment explanation
Indices: 76606809--76607032 Score: 287
Period size: 93 Copynumber: 2.4 Consensus size: 95
76606799 GGGTTATTGT
** *
76606809 GAGCTAGTGTAAGACATGTCTGGGATAT-GCATCGGTCACATTACGAGAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTGGGATATGGCATCGGTCACAAGACGAAAGCCAGTGTAAGACCAT
* * *
76606873 GTTTGGGATATGGCATCGGCATTGAGATGA
66 GTTTGGGACATGGCATCAGCATCGAGATGA
* * *
76606903 GAGCTAGTGTAAGACATGTTTGGGATATGGCATCGG-CATTAAGACGAAAGCTAGTGTAAGA-CA
1 GAGCTAGTGTAAGACATGTCTGGGATATGGCATCGGTCA-CAAGACGAAAGCCAGTGTAAGACCA
*
76606966 TGTTTGGGACAT-GCATCAGCCTCGAGATGTA
65 TGTTTGGGACATGGCATCAGCATCGAGATG-A
* *
76606997 -AGCTAGTGTAAGACATGTCTGAGACATGGCATCGGT
1 GAGCTAGTGTAAGACATGTCTGGGATATGGCATCGGT
76607033 ATCCTACTCA
Statistics
Matches: 113, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
93 46 0.41
94 43 0.38
95 24 0.21
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (95 bp):
GAGCTAGTGTAAGACATGTCTGGGATATGGCATCGGTCACAAGACGAAAGCCAGTGTAAGACCAT
GTTTGGGACATGGCATCAGCATCGAGATGA
Found at i:76614450 original size:20 final size:20
Alignment explanation
Indices: 76614427--76614470 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76614417 CATATCATGC
76614427 ATTCATT-TGTGATCTCATAT
1 ATTCATTGT-TGATCTCATAT
*
76614447 ATTCATTGTTGATTTCATAT
1 ATTCATTGTTGATCTCATAT
76614467 ATTC
1 ATTC
76614471 GTTTTCAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.25, C:0.14, G:0.09, T:0.52
Consensus pattern (20 bp):
ATTCATTGTTGATCTCATAT
Found at i:76614550 original size:24 final size:25
Alignment explanation
Indices: 76614523--76614569 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
76614513 GTAGGATAAC
76614523 AATGCTCACACGAGCTAT-AAATAT
1 AATGCTCACACGAGCTATGAAATAT
76614547 AATGCTCACACGAGCTATGAAAT
1 AATGCTCACACGAGCTATGAAAT
76614570 GGGCTTCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (25 bp):
AATGCTCACACGAGCTATGAAATAT
Found at i:76616536 original size:27 final size:27
Alignment explanation
Indices: 76616498--76616664 Score: 196
Period size: 27 Copynumber: 6.2 Consensus size: 27
76616488 GGGACGAAAT
*
76616498 AATGATCGAAATAC-CCCTATAAGGTAA
1 AATGACCGAAATACACCC-ATAAGGTAA
*
76616525 AATGACCGAAATACTCCCATAAGGTAA
1 AATGACCGAAATACACCCATAAGGTAA
*
76616552 AATGACCGAAATACCCCCAT-AGAGTAA
1 AATGACCGAAATACACCCATAAG-GTAA
* * *
76616579 AATGACTGAAGTACACCCATAGGGTAA
1 AATGACCGAAATACACCCATAAGGTAA
*
76616606 AATGACCGAAATACACCCATAGGGTAA
1 AATGACCGAAATACACCCATAAGGTAA
* * *
76616633 AATGACTGTAATAC-CCCTGTAAGGTAA
1 AATGACCGAAATACACCC-ATAAGGTAA
76616660 AATGA
1 AATGA
76616665 TTGTTTTACC
Statistics
Matches: 124, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.04
27 115 0.93
28 4 0.03
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.19
Consensus pattern (27 bp):
AATGACCGAAATACACCCATAAGGTAA
Found at i:76616687 original size:27 final size:27
Alignment explanation
Indices: 76616655--76616867 Score: 151
Period size: 27 Copynumber: 7.9 Consensus size: 27
76616645 ACCCCTGTAA
* *
76616655 GGTAAAATGATTGTTTTACCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * * * *
76616682 GTTAAAATAAC-GATTTTACCCATATGC
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* ** * **
76616709 GATAAAATGACAATTTTTCCCCCATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
76616736 GGCAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
76616763 GTTAAAATGACGGTTTTTCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** * *
76616790 GAAAAAATGA-TGATTTGGCCCTTATGA
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* *
76616817 GGTAAAATGAGTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** * *
76616844 GGTAGGATGATTGTTTTGTCCTTA
1 GGTAAAATGACTGTTTTGCCCTTA
76616868 CGTGATGTAT
Statistics
Matches: 143, Mismatches: 39, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
26 2 0.01
27 140 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:76616715 original size:81 final size:80
Alignment explanation
Indices: 76616630--76616799 Score: 182
Period size: 81 Copynumber: 2.1 Consensus size: 80
76616620 ACCCATAGGG
* *
76616630 TAAAATGAC-TGTAATACCCC-TGTAAGGTAAAATGATTGTTTTACCCTTATGTGTTAAAATAAC
1 TAAAATGACAT-TAATACCCCATGT--GGCAAAATGACTGTTTTACCCTTATGTGTTAAAATAAC
76616693 GATTTTACCCATATGCGA
63 GATTTTACCCATATGCGA
** * * * *
76616711 TAAAATGACAATTTTTCCCCCATGTGGCAAAATGACTGTTTTGCCCTTATGTGTTAAAATGACGG
1 TAAAATGAC-ATTAATACCCCATGTGGCAAAATGACTGTTTTACCCTTATGTGTTAAAATAACGA
* * *
76616776 TTTTTCCCTTATGTGA
65 TTTTACCCATATGCGA
*
76616792 AAAAATGA
1 TAAAATGA
76616800 TGATTTGGCC
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
81 64 0.86
82 6 0.08
83 4 0.05
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (80 bp):
TAAAATGACATTAATACCCCATGTGGCAAAATGACTGTTTTACCCTTATGTGTTAAAATAACGAT
TTTACCCATATGCGA
Found at i:76616824 original size:81 final size:81
Alignment explanation
Indices: 76616654--76616844 Score: 220
Period size: 81 Copynumber: 2.4 Consensus size: 81
76616644 TACCCCTGTA
* * *
76616654 AGGTAAAATGATTGTTTTACCCTTATGTGTTAAAATAACGATTTTACCCATATGCGATAAAATGA
1 AGGTAAAATGACTGTTTTGCCCTTATGTGTTAAAATAACGATTTTACCCATATGCGAAAAAATGA
**
76616719 CAATTTTTCCCCCATG
66 CAATTTGGCCCCCATG
* * * * * * *
76616735 TGGCAAAATGACTGTTTTGCCCTTATGTGTTAAAATGACGGTTTTTCCCTTATGTGAAAAAATGA
1 AGGTAAAATGACTGTTTTGCCCTTATGTGTTAAAATAACGATTTTACCCATATGCGAAAAAATGA
** **
76616800 TGATTTGGCCCTTATG
66 CAATTTGGCCCCCATG
* *
76616816 AGGTAAAATGAGTATTTTGCCCTTATGTG
1 AGGTAAAATGACTGTTTTGCCCTTATGTG
76616845 GTAGGATGAT
Statistics
Matches: 90, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37
Consensus pattern (81 bp):
AGGTAAAATGACTGTTTTGCCCTTATGTGTTAAAATAACGATTTTACCCATATGCGAAAAAATGA
CAATTTGGCCCCCATG
Found at i:76617750 original size:16 final size:16
Alignment explanation
Indices: 76617729--76617760 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76617719 AGTGTAACGC
76617729 CCAAAAATCTCGAAAT
1 CCAAAAATCTCGAAAT
*
76617745 CCAAAATTCTCGAAAT
1 CCAAAAATCTCGAAAT
76617761 TTTATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.25, G:0.06, T:0.22
Consensus pattern (16 bp):
CCAAAAATCTCGAAAT
Found at i:76618951 original size:16 final size:16
Alignment explanation
Indices: 76618908--76618951 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
76618898 GGCAAAAGCT
76618908 AAAATGCCAAAAAGTCG
1 AAAA-GCCAAAAAGTCG
* *
76618925 AAAAACTAAAAAGTCG
1 AAAAGCCAAAAAGTCG
76618941 AAAAGCCAAAA
1 AAAAGCCAAAA
76618952 GTTGGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.61, C:0.16, G:0.14, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAAAGTCG
Found at i:76619207 original size:29 final size:29
Alignment explanation
Indices: 76619162--76619280 Score: 145
Period size: 29 Copynumber: 4.2 Consensus size: 29
76619152 GTGAGCATGA
76619162 ATAT-AATAT-AATTTGGGCCTAATGGGCC
1 ATATGAATATGAA-TTGGGCCTAATGGGCC
* *
76619190 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * *
76619219 ATAAGAATATGAACTGGGCCAAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
76619248 ATTTGAATACG-ATTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
76619276 ATATG
1 ATATG
76619281 CATGAATGTA
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
28 23 0.30
29 51 0.67
30 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:76622920 original size:42 final size:42
Alignment explanation
Indices: 76622863--76622948 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
76622853 ATTTTCTCGA
* *
76622863 AGATTAATTTGCGTTCGAGATAT-ATCCAATTGAGGGTAAAGG
1 AGATTAATTTACGTTCGAGATATCA-CCAATTGAGAGTAAAGG
* * *
76622905 AGATTGATTTACGTTCGGGATATCACCAATTGAGAGTGAAGG
1 AGATTAATTTACGTTCGAGATATCACCAATTGAGAGTAAAGG
76622947 AG
1 AG
76622949 GCGGATGTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
42 37 0.97
43 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (42 bp):
AGATTAATTTACGTTCGAGATATCACCAATTGAGAGTAAAGG
Found at i:76626888 original size:40 final size:40
Alignment explanation
Indices: 76626803--76626955 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 40
76626793 GGATATAGCG
* * * * * ***
76626803 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATATGGGA
* * *
76626843 GCTCGCACAAATACCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATATGGGA
* **
76626883 ACTCGCACAAATGCCTTC-GGATCTTAATCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATGGGA
* *
76626923 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
76626956 CATCATTCAA
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 3 0.03
40 76 0.84
41 11 0.12
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATATGGGA
Found at i:76634036 original size:40 final size:40
Alignment explanation
Indices: 76633980--76634079 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
76633970 AGATATAGCG
* * * *
76633980 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAAGA
* * **
76634020 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
76634060 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
76634080 ATCTTAGTCC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAAGA
Found at i:76636202 original size:17 final size:15
Alignment explanation
Indices: 76636176--76636225 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
76636166 CACACACAAT
76636176 AAATCAGAAAAAGCTG
1 AAATCAG-AAAAGCTG
76636192 AAATACAGAAAAGCTG
1 AAAT-CAGAAAAGCTG
* * *
76636208 AAAGCCGAACAGCTG
1 AAATCAGAAAAGCTG
76636223 AAA
1 AAA
76636226 GTTGGGCTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 12 0.40
16 15 0.50
17 3 0.10
ACGTcount: A:0.54, C:0.16, G:0.20, T:0.10
Consensus pattern (15 bp):
AAATCAGAAAAGCTG
Found at i:76636482 original size:29 final size:29
Alignment explanation
Indices: 76636450--76636552 Score: 104
Period size: 29 Copynumber: 3.6 Consensus size: 29
76636440 AATATGATTT
76636450 GGCCTAATGGGCCATATGAATGTGAATTG
1 GGCCTAATGGGCCATATGAATGTGAATTG
* * * *
76636479 GGCCTAGTGGGCCATAAGAATATGAATTA
1 GGCCTAATGGGCCATATGAATGTGAATTG
* *
76636508 GGCC-AGATGGGCCATTTG-A-GTAAGATTG
1 GGCCTA-ATGGGCCATATGAATGTGA-ATTG
*
76636536 GGCCTAGTGGGCCATAT
1 GGCCTAATGGGCCATAT
76636553 TTATGTTTGT
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
27 2 0.03
28 18 0.31
29 39 0.66
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
GGCCTAATGGGCCATATGAATGTGAATTG
Found at i:76636502 original size:57 final size:57
Alignment explanation
Indices: 76636440--76636551 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 57
76636430 GCATGAATAT
* *
76636440 AATATG-ATTTGGCCTA-ATGGGCCATATGAATGTGA-ATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTAGGCC-AGATGGGCCATATG-A-GTAAGATTGGGCCTAGTGGGCCATAAG
*
76636497 AATATGAATTAGGCCAGATGGGCCATTTGAGTAAGATTGGGCCTAGTGGGCCATA
1 AATATGAATTAGGCCAGATGGGCCATATGAGTAAGATTGGGCCTAGTGGGCCATA
76636552 TTTATGTTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
56 3 0.06
57 28 0.57
58 18 0.37
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (57 bp):
AATATGAATTAGGCCAGATGGGCCATATGAGTAAGATTGGGCCTAGTGGGCCATAAG
Found at i:76640109 original size:27 final size:27
Alignment explanation
Indices: 76640073--76640266 Score: 221
Period size: 27 Copynumber: 7.2 Consensus size: 27
76640063 GGGACGAAAT
76640073 AATGACCGAAATACCCCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGATAA
* *
76640100 AATGATCGAAATA-CCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAA
76640126 AATGACCGAAATACCCCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGATAA
* *
76640153 AATGACCGAAATATCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAA
* * *
76640180 AATGATCGAAATTCCCCCATAGAATAA
1 AATGACCGAAATACCCCCATAGGATAA
* ** * *
76640207 AATAACCCCAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAA
* * **
76640234 AATGACTGTAATACCCTTATAAGG-TAA
1 AATGACCGAAATACCCCCAT-AGGATAA
76640261 AATGAC
1 AATGAC
76640267 TGTTTTGCCC
Statistics
Matches: 141, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 24 0.17
27 114 0.81
28 3 0.02
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.20
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGATAA
Found at i:76640197 original size:54 final size:53
Alignment explanation
Indices: 76640073--76640266 Score: 255
Period size: 54 Copynumber: 3.6 Consensus size: 53
76640063 GGGACGAAAT
*
76640073 AATGACCGAAATACCCCCATAGGATAAAATGATCGAAATACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCATAGGGTAA
76640126 AATGACCGAAATACCCCCATAGGATAAAATGACCGAAATATCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAAAATGACCGAAATA-CCCCATAGGGTAA
* * * * **
76640180 AATGATCGAAATTCCCCCATAGAATAAAATAACCCCAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCC-ATAGGGTAA
* * **
76640234 AATGACTGTAATACCCTTATAAGG-TAAAATGAC
1 AATGACCGAAATACCCCCAT-AGGATAAAATGAC
76640267 TGTTTTGCCC
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
53 43 0.35
54 78 0.63
55 2 0.02
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.20
Consensus pattern (53 bp):
AATGACCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCATAGGGTAA
Found at i:76640277 original size:27 final size:27
Alignment explanation
Indices: 76640229--76640498 Score: 262
Period size: 27 Copynumber: 10.0 Consensus size: 27
76640219 ACCCCTATAG
** * **
76640229 GGTAAAATGACTGTAATACCCTTATAA
1 GGTAAAATGACTGTTTTGCCCTTATGT
76640256 GGTAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
76640283 GTTAAAATGAC-GATTTTGCCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* *
76640310 GATAAAATGACGGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
76640337 GTTAAAACGAC-GATTTTCCCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* * *
76640364 GATAAAATCA-TGGTTTT-CCTTTATGT
1 GGTAAAATGACT-GTTTTGCCCTTATGT
*
76640390 GGAAAAATGACTGATTTT-CCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* * *
76640417 GTTAAAATGACGGTTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
76640444 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** * *
76640471 GGTAGGATGATTGTTTTGCCCCTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
76640498 G
1 G
76640499 ATGTATGTTT
Statistics
Matches: 204, Mismatches: 31, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
26 22 0.11
27 180 0.88
28 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:76640415 original size:80 final size:81
Alignment explanation
Indices: 76640269--76640471 Score: 250
Period size: 80 Copynumber: 2.5 Consensus size: 81
76640259 AAAATGACTG
* * *
76640269 TTTTGCCCTTATGTGTTAAAATGACGATTTTGCCCTTATGTGATAAAATGACGGTTTTGCCCTTA
1 TTTTGCCCTTATGTGATAAAATCACGATTTTGCCCTTATGTGATAAAATGACGATTTTGCCCTTA
76640334 TGTGTTAAAACGACGA
66 TGTGTTAAAACGACGA
* * * *
76640350 TTTTCCCCTTATGTGATAAAATCATGGTTTT-CCTTTATGTGGA-AAAATGACTGATTTT-CCCT
1 TTTTGCCCTTATGTGATAAAATCACGATTTTGCCCTTATGT-GATAAAATGAC-GATTTTGCCCT
* *
76640412 TATGTGTTAAAATGACGG
64 TATGTGTTAAAACGACGA
* * * *
76640430 TTTTGCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGTG
1 TTTTGCCCTTATGTGATAAAATCACGATTTTGCCCTTATGTG
76640472 GTAGGATGAT
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
80 61 0.60
81 41 0.40
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (81 bp):
TTTTGCCCTTATGTGATAAAATCACGATTTTGCCCTTATGTGATAAAATGACGATTTTGCCCTTA
TGTGTTAAAACGACGA
Found at i:76640425 original size:107 final size:108
Alignment explanation
Indices: 76640268--76640498 Score: 304
Period size: 107 Copynumber: 2.1 Consensus size: 108
76640258 TAAAATGACT
**
76640268 GTTTTGCCCTTATGTGTTAAAATGACGATTTTGCCCTTATGTGATAAAATGACGGTTTTGCCCTT
1 GTTTTGCCCTTATGTGGAAAAATGACGATTTTGCCCTTATGTGATAAAATGACGGTTTTGCCCTT
* *
76640333 ATGTGTTAAAACGACGATTTTCCCCTTATGTGATAAAATCATG
66 ATGAGGTAAAACGACGATTTTCCCCTTATGTGATAAAATCATG
* *
76640376 GTTTT-CCTTTATGTGGAAAAATGACTGATTTT-CCCTTATGTGTTAAAATGACGGTTTTGCCCT
1 GTTTTGCCCTTATGTGGAAAAATGAC-GATTTTGCCCTTATGTGATAAAATGACGGTTTTGCCCT
* * * * ** * *
76640439 TATGAGGTAAAATGACTATTTTGCCCTTATGTGGTAGGATGATT
65 TATGAGGTAAAACGACGATTTTCCCCTTATGTGATAAAATCATG
*
76640483 GTTTTGCCCCTATGTG
1 GTTTTGCCCTTATGTG
76640499 ATGTATGTTT
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
107 86 0.82
108 19 0.18
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (108 bp):
GTTTTGCCCTTATGTGGAAAAATGACGATTTTGCCCTTATGTGATAAAATGACGGTTTTGCCCTT
ATGAGGTAAAACGACGATTTTCCCCTTATGTGATAAAATCATG
Found at i:76640455 original size:54 final size:54
Alignment explanation
Indices: 76640258--76640498 Score: 297
Period size: 54 Copynumber: 4.5 Consensus size: 54
76640248 CCTTATAAGG
* *
76640258 TAAAATGACTGTTTTGCCCTTATGTGTTAAAATGACGATTTTGCCCTTATGTGA
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
* * *
76640312 TAAAATGACGGTTTTGCCCTTATGTGTTAAAACGACGATTTTCCCCTTATGTGA
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
* * * * *
76640366 TAAAATCATGGTTTT-CCTTTATGTGGAAAAATGACTGATTTT-CCCTTATGTGT
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGAC-GATTTTGCCCTTATGTGA
* * *
76640419 TAAAATGACGGTTTTGCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
** ** *
76640473 TAGGATGATTGTTTTGCCCCTATGTG
1 TAAAATGACGGTTTTGCCCTTATGTG
76640499 ATGTATGTTT
Statistics
Matches: 161, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 44 0.27
54 117 0.73
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (54 bp):
TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
Found at i:76640854 original size:18 final size:18
Alignment explanation
Indices: 76640828--76640876 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
76640818 GTATACAGCA
*
76640828 TACTCTTACTGCACTGAT
1 TACTATTACTGCACTGAT
* * *
76640846 TACTGTTACTACACTGTT
1 TACTATTACTGCACTGAT
76640864 TACTATTACTGCA
1 TACTATTACTGCA
76640877 ATTGGCCAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (18 bp):
TACTATTACTGCACTGAT
Found at i:76649792 original size:40 final size:39
Alignment explanation
Indices: 76649748--76649967 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 39
76649738 GCTACTCGTT
* *
76649748 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
76649788 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
76649827 CAAACGCCTTCGGGACTTAGCCCGGGATTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* *
76649867 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCGCA
* * *
76649907 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGTAAC-TCGCA
76649948 CAAA-GCCTTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAGC
76649968 TCGGACATCA
Statistics
Matches: 159, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.25
40 108 0.68
41 11 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:76649848 original size:79 final size:79
Alignment explanation
Indices: 76649748--76649972 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 79
76649738 GCTACTCGTT
*
76649748 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
76649813 -TATAATAACTCGCA
65 ATATAATAACTCGCA
* * * * *
76649827 CAAACGCCTTCGGGACTTAGCCCGGGATTAGTAACTCGTACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTTGCACAAATGCCTTCGGGA-CTTAGCCCG
* *
76649891 GATTTAGTAACTCGCA
64 GATATAATAACTCGCA
* * *
76649907 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCTC
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTT-GCACAAATGCCTTCGGGACTTAGCCC
76649970 GGA
63 GGA
76649973 CATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
78 4 0.03
79 56 0.46
80 53 0.43
81 10 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGA
TATAATAACTCGCA
Found at i:76653041 original size:42 final size:42
Alignment explanation
Indices: 76652920--76653041 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 42
76652910 TACTGTACCA
* * *
76652920 ATGCCATATCCCAGATATGGTCTTACATGTAATGTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTAGATGTAATCTCATATTG
* * * *
76652962 AAGCCAATAACCCAGCTATGGTCTTACG--CTAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTA-GATGTAA-TCTCATATTG
**
76653005 ATGCCATATCTTAGATATGGTCTTAGATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTAGATGTAATCTCA
76653042 GTAACCCTAA
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
41 1 0.02
42 28 0.45
43 33 0.53
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTAGATGTAATCTCATATTG
Found at i:76656405 original size:16 final size:16
Alignment explanation
Indices: 76656381--76656431 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
76656371 GTAGATCGGC
*
76656381 AAATCCTGAAAAGCCA
1 AAATGCTGAAAAGCCA
**
76656397 AAATGCTGAAAAGCTG
1 AAATGCTGAAAAGCCA
* *
76656413 AAATGCCGGAAAGCCA
1 AAATGCTGAAAAGCCA
76656429 AAA
1 AAA
76656432 GTTTGGCTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.49, C:0.20, G:0.20, T:0.12
Consensus pattern (16 bp):
AAATGCTGAAAAGCCA
Found at i:76656712 original size:28 final size:29
Alignment explanation
Indices: 76656655--76656729 Score: 75
Period size: 28 Copynumber: 2.7 Consensus size: 29
76656645 GTAAAAGTGA
* *
76656655 TTGGGCCTAGTGGGCCATATAGATGTGAT
1 TTGGGCCTAATGGGCCATATAGATGAGAT
*
76656684 TTGGGCC-AATGGGTCATAT-GAATGAGA-
1 TTGGGCCTAATGGGCCATATAG-ATGAGAT
* *
76656711 TTGGGACTAGTGGGCCATA
1 TTGGGCCTAATGGGCCATA
76656730 AGCATGTATG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
27 7 0.18
28 24 0.63
29 7 0.18
ACGTcount: A:0.24, C:0.13, G:0.35, T:0.28
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAGATGAGAT
Found at i:76660749 original size:28 final size:28
Alignment explanation
Indices: 76660675--76660752 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 28
76660665 CTGTAAAAGT
* *
76660675 GATTGGGTCTAGTGGGCCATATAGATGT
1 GATTGGGCCTAGTGGGCCATATAGATGA
* *
76660703 GATTTGGGCCTAATTGGCCATAT-GAATGA
1 GA-TTGGGCCTAGTGGGCCATATAG-ATGA
76660732 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAGTGGGCCATA
76660753 AGTATGTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 20 0.48
29 22 0.52
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.29
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATAGATGA
Found at i:76665556 original size:20 final size:20
Alignment explanation
Indices: 76665531--76665584 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
76665521 TTTAAGGGCC
76665531 ACACGCCCGTGTGGCATGGG
1 ACACGCCCGTGTGGCATGGG
*
76665551 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCATGGG
*
76665571 ACACACCCGTGTGG
1 ACACGCCCGTGTGG
76665585 GTAGGCCGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.15, C:0.31, G:0.37, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTGTGGCATGGG
Found at i:76666035 original size:18 final size:19
Alignment explanation
Indices: 76666007--76666042 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
76665997 ATACCAATAC
76666007 CATATTAACATCTATCATA
1 CATATTAACATCTATCATA
*
76666026 CATA-TAACATTTATCAT
1 CATATTAACATCTATCAT
76666043 GCCATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (19 bp):
CATATTAACATCTATCATA
Found at i:76666048 original size:19 final size:19
Alignment explanation
Indices: 76666006--76666048 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
76665996 CATACCAATA
76666006 CCATATTAACATCTATCAT
1 CCATATTAACATCTATCAT
* *
76666025 ACATA-TAACATTTATCAT
1 CCATATTAACATCTATCAT
76666043 GCCATA
1 -CCATA
76666049 AATCATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (19 bp):
CCATATTAACATCTATCAT
Found at i:76667328 original size:42 final size:42
Alignment explanation
Indices: 76667202--76667328 Score: 123
Period size: 42 Copynumber: 3.0 Consensus size: 42
76667192 CACAGTACCG
* * * *
76667202 TACCAATGCCATATCACAGATATGGTCTTACATGTAATCTCG
1 TACCGATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
* * *
76667244 TACCGATGCCAATAGT-CTAGCTATGGTCTTACGCG-AAGTCTCA
1 TACCGATGCC-ATA-TCCCAGATATGGTCTTACACGTAA-TCTCA
** *
76667287 TATTGATGCCATATCCCAGATATGGTCGTACACGTAATCTCA
1 TACCGATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
76667329 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 34 0.51
43 31 0.46
44 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
TACCGATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
Found at i:76669821 original size:49 final size:49
Alignment explanation
Indices: 76669766--76669892 Score: 209
Period size: 49 Copynumber: 2.6 Consensus size: 49
76669756 AACCAACCAA
* * *
76669766 GAACACACATAGGCACCAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
1 GAACACACCTAGACACTAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
*
76669815 GAACACACCTAGACACTAAGTGCTTAGCCAGTAAGCTAACATCCCTCCG
1 GAACACACCTAGACACTAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
*
76669864 GAACACACCTAGACACTAAGTGCCAAGCC
1 GAACACACCTAGACACTAAGTGCCTAGCC
76669893 CGAAGACTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 72 1.00
ACGTcount: A:0.34, C:0.34, G:0.17, T:0.15
Consensus pattern (49 bp):
GAACACACCTAGACACTAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
Found at i:76678537 original size:28 final size:28
Alignment explanation
Indices: 76678468--76678568 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
76678458 GACAAGATTG
* * * *
76678468 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
76678498 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
76678526 GCACTAAGTGTGCGAG-CTGAATGCATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
76678555 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76678569 GATTCACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 18 0.29
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:76682436 original size:56 final size:53
Alignment explanation
Indices: 76682343--76682451 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
76682333 ATGAAAAAAA
76682343 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
76682396 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
76682452 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:76683712 original size:40 final size:40
Alignment explanation
Indices: 76683646--76683812 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
76683636 AAATTGAATG
* * *
76683646 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76683685 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
76683725 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76683765 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76683805 ATATCCGG
1 ATATCCGG
76683813 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76690441 original size:56 final size:53
Alignment explanation
Indices: 76690348--76690456 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
76690338 ATGAAAAAAA
76690348 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
76690401 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
76690457 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:76691716 original size:40 final size:40
Alignment explanation
Indices: 76691650--76691816 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
76691640 AAATTGAATG
* * *
76691650 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76691689 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
76691729 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76691769 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76691809 ATATCCGG
1 ATATCCGG
76691817 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76697841 original size:28 final size:28
Alignment explanation
Indices: 76697770--76697870 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
76697760 GACAAGATTG
* * * *
76697770 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
*
76697800 GTACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
76697828 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
76697857 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76697871 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 17 0.27
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:76697864 original size:29 final size:28
Alignment explanation
Indices: 76697802--76697870 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 28
76697792 ATTGTACAGT
*
76697802 ACTAAGTGTGCGAGTTTGATTATATAGC
1 ACTAAGTGTGCGAGTCTGATTATATAGC
76697830 ACTAAGTGTGCGAG-CTGAATGTATATAGC
1 ACTAAGTGTGCGAGTCTG-AT-TATATAGC
76697859 ACTAAGTGTGCG
1 ACTAAGTGTGCG
76697871 GATTCACTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 16 0.42
29 20 0.53
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTCTGATTATATAGC
Found at i:76700630 original size:16 final size:18
Alignment explanation
Indices: 76700609--76700641 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
76700599 CATACTAGCT
76700609 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
76700625 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
76700642 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:76701264 original size:44 final size:44
Alignment explanation
Indices: 76701179--76701339 Score: 175
Period size: 44 Copynumber: 3.7 Consensus size: 44
76701169 CCGGCATTTC
* * *
76701179 GCCTGCTAGGCTCGAA-GCCC-GATA-TCATTTCACCAGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCAAATAGT-ATCTCACCA-CATTATA
** *
76701222 GCCTGCTAGGCTTGAAGGCCCGAATAGTATCTCACCACATTATA
1 GCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCACCACATTATA
* ** *
76701266 GCCTGGTAGGCTCAAAGGCCCAAATAGTATCTCACCGGTATCATA
1 GCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCACC-ACATTATA
*
76701311 GCCTACTAGGCTCAAAGGCCCAAATAGTA
1 GCCTGCTAGGCTCAAAGGCCCAAATAGTA
76701340 CCGTACGATA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
43 15 0.15
44 43 0.42
45 43 0.42
46 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
GCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCACCACATTATA
Found at i:76712730 original size:40 final size:40
Alignment explanation
Indices: 76712664--76712830 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76712654 AAATTGAATG
* * *
76712664 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76712703 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76712743 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76712783 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76712823 ATATCCGG
1 ATATCCGG
76712831 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76720730 original size:40 final size:40
Alignment explanation
Indices: 76720664--76720830 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
76720654 AAATTGAATG
* * *
76720664 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
76720703 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
76720743 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
76720783 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
76720823 ATATCCGG
1 ATATCCGG
76720831 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:76722325 original size:13 final size:13
Alignment explanation
Indices: 76722307--76722343 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
76722297 CTCAGCAGGG
76722307 ACACGCCCGTGGC
1 ACACGCCCGTGGC
76722320 ACACGCCCGTGGC
1 ACACGCCCGTGGC
76722333 ACACGCCCGTG
1 ACACGCCCGTG
76722344 TTCGATTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.16, C:0.46, G:0.30, T:0.08
Consensus pattern (13 bp):
ACACGCCCGTGGC
Found at i:76724884 original size:30 final size:30
Alignment explanation
Indices: 76724848--76724907 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
76724838 AATCACTAAC
76724848 TCATAATCTTTTAGCAACTTGAGCCATCTT
1 TCATAATCTTTTAGCAACTTGAGCCATCTT
76724878 TCATAATCTTTTAGCAACTTGAGCCATCTT
1 TCATAATCTTTTAGCAACTTGAGCCATCTT
76724908 CGTTGTCGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (30 bp):
TCATAATCTTTTAGCAACTTGAGCCATCTT
Found at i:76726644 original size:24 final size:23
Alignment explanation
Indices: 76726612--76726663 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
76726602 TGAATCGACG
* *
76726612 AAAGCCGAAATGCGGAAAAGTCGA
1 AAAGTCGAAATGCCGAAAAGTC-A
76726636 AAAGTCGAAATGCCGAAAAGTCA
1 AAAGTCGAAATGCCGAAAAGTCA
76726659 AAAGT
1 AAAGT
76726664 TGGGCTACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.48, C:0.15, G:0.25, T:0.12
Consensus pattern (23 bp):
AAAGTCGAAATGCCGAAAAGTCA
Found at i:76726663 original size:7 final size:8
Alignment explanation
Indices: 76726626--76726663 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
76726616 CCGAAATGCG
76726626 GAAAAGTC
1 GAAAAGTC
76726634 GAAAAGTC
1 GAAAAGTC
* *
76726642 GAAATGCC
1 GAAAAGTC
76726650 GAAAAGTC
1 GAAAAGTC
76726658 -AAAAGT
1 GAAAAGT
76726664 TGGGCTACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.50, C:0.13, G:0.24, T:0.13
Consensus pattern (8 bp):
GAAAAGTC
Found at i:76726904 original size:28 final size:29
Alignment explanation
Indices: 76726873--76726990 Score: 127
Period size: 28 Copynumber: 4.2 Consensus size: 29
76726863 GTGAGCATGA
*
76726873 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * * *
76726901 ATATGAATGTGAATTGGGACTAGTGGTCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
*
76726930 ATA-GAATATGAACTGGGCC-ATATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* *
76726958 ATTTGAATAAG-ATTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
76726986 ATATG
1 ATATG
76726991 CATGTATGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
27 1 0.01
28 42 0.58
29 29 0.40
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:76728509 original size:28 final size:28
Alignment explanation
Indices: 76728478--76728549 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
76728468 TTGATATTTT
*
76728478 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
76728506 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
76728534 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
76728550 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:76732011 original size:40 final size:40
Alignment explanation
Indices: 76731966--76732132 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
76731956 CGGAATATAA
76731966 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76732006 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76732046 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
76732086 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76732125 CCGGATAT
1 CCGGATAT
76732133 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76732116 original size:80 final size:79
Alignment explanation
Indices: 76731982--76732132 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
76731972 ATAATCACGT
*
76731982 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
76732047 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
76732062 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
76732125 CCGGATAT
64 CCGGATAT
76732133 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:76740016 original size:40 final size:40
Alignment explanation
Indices: 76739971--76740137 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
76739961 CGGAATATAA
76739971 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76740011 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76740051 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
76740091 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76740130 CCGGATAT
1 CCGGATAT
76740138 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76740121 original size:80 final size:79
Alignment explanation
Indices: 76739987--76740137 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
76739977 ATAATCACGT
*
76739987 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
76740052 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
76740067 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
76740130 CCGGATAT
64 CCGGATAT
76740138 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:76741395 original size:56 final size:56
Alignment explanation
Indices: 76741332--76741439 Score: 139
Period size: 56 Copynumber: 1.9 Consensus size: 56
76741322 CCCCCTTTTC
76741332 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTCTTTTCTTT
*** **
76741388 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTCTTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTCTTTT
76741440 TTTTTTCTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
56 41 0.91
57 4 0.09
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (56 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTCTTTTCTTT
Found at i:76744175 original size:30 final size:31
Alignment explanation
Indices: 76744151--76744208 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
76744141 AGCTCCTATC
*
76744151 AGCTCACTTGAGTTTATTTT-AGCTCATACG
1 AGCTCAATTGAGTTTATTTTCAGCTCATACG
* *
76744181 AGCTCAATTTAGTTTCTTTTCAGCTCAT
1 AGCTCAATTGAGTTTATTTTCAGCTCAT
76744209 TTCTTTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (31 bp):
AGCTCAATTGAGTTTATTTTCAGCTCATACG
Found at i:76751071 original size:50 final size:49
Alignment explanation
Indices: 76750952--76751078 Score: 130
Period size: 52 Copynumber: 2.5 Consensus size: 49
76750942 TGTAAGAACA
* ** **
76750952 CATGTGTAGTACTATGTGCAAGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CATGTGTAGTACTAAGTGCAAGCTACTACATGTACAAAATGG-TTTAGGT
* *
76751002 CATGTGGGTAGTACTAAGTGCAAGCTACTACATGTACCAGATGG-TTAGGT
1 CATGT--GTAGTACTAAGTGCAAGCTACTACATGTACAAAATGGTTTAGGT
*
76751052 GGCATGTGTAGTACTAAGTGCAGGCTA
1 --CATGTGTAGTACTAAGTGCAAGCTA
76751079 TTATACGTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
50 30 0.46
52 35 0.54
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAAGCTACTACATGTACAAAATGGTTTAGGT
Found at i:76754879 original size:28 final size:28
Alignment explanation
Indices: 76754847--76754916 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
76754837 AATGAGATTG
*
76754847 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
76754875 GCACTAAGTGTACGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
76754903 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76754917 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:76756667 original size:30 final size:29
Alignment explanation
Indices: 76756616--76756674 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
76756606 TAAAAGCTAC
76756616 ATGAATGCATGAAACATATAAAAATCAAA
1 ATGAATGCATGAAACATATAAAAATCAAA
76756645 ATGAATGATCATGAAA-ATATAAAAATCAAA
1 ATGAATG--CATGAAACATATAAAAATCAAA
76756675 GCTTGGAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 7 0.25
30 14 0.50
31 7 0.25
ACGTcount: A:0.59, C:0.08, G:0.10, T:0.22
Consensus pattern (29 bp):
ATGAATGCATGAAACATATAAAAATCAAA
Found at i:76761080 original size:29 final size:29
Alignment explanation
Indices: 76761047--76761177 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
76761037 TGACGAGATC
*
76761047 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
76761076 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
76761105 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
76761134 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
76761163 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
76761178 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:76772307 original size:40 final size:39
Alignment explanation
Indices: 76772262--76772391 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
76772252 CGGAATACAA
76772262 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
76772302 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
76772342 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
76772382 CCGGATATAA
1 CCGGATATAA
76772392 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:76780373 original size:40 final size:39
Alignment explanation
Indices: 76780328--76780457 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
76780318 CGGAATACAA
76780328 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
76780368 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
76780408 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
76780448 CCGGATATAA
1 CCGGATATAA
76780458 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:76786706 original size:49 final size:49
Alignment explanation
Indices: 76786612--76786711 Score: 137
Period size: 49 Copynumber: 2.0 Consensus size: 49
76786602 TTAGAGGTAG
*
76786612 TTATTGAGATAGCTTCAGCTACATATATATTGGCACTTCGGGTGCAAGA
1 TTATTGAGATAGCTTCAGCTACATATATATTGGCACTTAGGGTGCAAGA
* * * * **
76786661 TTATTGAGATAGCTTCGGCTATATTTTTATTGGCACTTATTGTGCAAGA
1 TTATTGAGATAGCTTCAGCTACATATATATTGGCACTTAGGGTGCAAGA
76786710 TT
1 TT
76786712 CCCAGGTGTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (49 bp):
TTATTGAGATAGCTTCAGCTACATATATATTGGCACTTAGGGTGCAAGA
Found at i:76789613 original size:18 final size:19
Alignment explanation
Indices: 76789586--76789633 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
76789576 TTGGCATTTG
* *
76789586 GTATCAATAC-TTCAATGA
1 GTATCGATACATTCAATAA
76789604 GTATCGATACTATTCAATAA
1 GTATCGATAC-ATTCAATAA
*
76789624 ATATCGATAC
1 GTATCGATAC
76789634 CACTATAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.36
20 16 0.64
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (19 bp):
GTATCGATACATTCAATAA
Found at i:76792196 original size:16 final size:17
Alignment explanation
Indices: 76792177--76792227 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 17
76792167 CGAAATGCCG
*
76792177 AAATGTCGAAAAG-CAA
1 AAATGCCGAAAAGCCAA
* * *
76792193 AAATACCGAAAAGTC-G
1 AAATGCCGAAAAGCCAA
76792209 AAATGCCGAAAAGCCAA
1 AAATGCCGAAAAGCCAA
76792226 AA
1 AA
76792228 GTTTGGCTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
16 24 0.89
17 3 0.11
ACGTcount: A:0.55, C:0.18, G:0.18, T:0.10
Consensus pattern (17 bp):
AAATGCCGAAAAGCCAA
Found at i:76792360 original size:19 final size:18
Alignment explanation
Indices: 76792336--76792380 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
76792326 ATTTGGCCAT
76792336 ATGGGCCACAATGGGCTAA
1 ATGGGCC-CAATGGGCTAA
*
76792355 ATGGGCCCGATGGGCT-A
1 ATGGGCCCAATGGGCTAA
*
76792372 TTGGGCCCA
1 ATGGGCCCA
76792381 TAATAGGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 8 0.35
18 8 0.35
19 7 0.30
ACGTcount: A:0.22, C:0.24, G:0.36, T:0.18
Consensus pattern (18 bp):
ATGGGCCCAATGGGCTAA
Found at i:76792369 original size:18 final size:19
Alignment explanation
Indices: 76792336--76792371 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
76792326 ATTTGGCCAT
76792336 ATGGGCCACAATGGGCTAA
1 ATGGGCCACAATGGGCTAA
*
76792355 ATGGGCC-CGATGGGCTA
1 ATGGGCCACAATGGGCTA
76792372 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.25, C:0.22, G:0.36, T:0.17
Consensus pattern (19 bp):
ATGGGCCACAATGGGCTAA
Found at i:76792869 original size:25 final size:26
Alignment explanation
Indices: 76792835--76792888 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
76792825 AAACCATAAT
* *
76792835 TAAGGG-AAAATTACCAAAATGCCCC
1 TAAGGGAAAAATGACCAAAATACCCC
76792860 TAAGGGAAAAAATGACCAAAATACCCC
1 TAAGGG-AAAAATGACCAAAATACCCC
76792887 TA
1 TA
76792889 GGTGTGAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
27 19 0.76
ACGTcount: A:0.48, C:0.22, G:0.15, T:0.15
Consensus pattern (26 bp):
TAAGGGAAAAATGACCAAAATACCCC
Found at i:76796946 original size:28 final size:29
Alignment explanation
Indices: 76796836--76796950 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
76796826 GTGAGCATGA
* * *
76796836 ATATGAATGTGA-CTGAGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
76796864 ATATAAATGTGATTTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** *
76796893 ATATTTAGGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
76796922 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
76796950 A
1 A
76796951 GATACAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 27 0.38
29 45 0.62
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:76798713 original size:46 final size:46
Alignment explanation
Indices: 76798646--76798817 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
76798636 AACCCGCCCC
* *
76798646 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
76798692 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCATCCA
* * * ***
76798740 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
76798785 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
76798818 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 1 0.01
46 58 0.56
47 27 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
Found at i:76798760 original size:93 final size:93
Alignment explanation
Indices: 76798651--76798821 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
76798641 GCCCCTAAGT
* * ***
76798651 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76798716 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
76798744 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76798809 CGAGTTCGGATGC
66 CGAGTTCGGATGC
76798822 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:76802938 original size:13 final size:13
Alignment explanation
Indices: 76802920--76802945 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76802910 GCTTCTTCTC
76802920 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
76802933 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
76802946 AATGTTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTTCTTTCTTT
Found at i:76806135 original size:29 final size:28
Alignment explanation
Indices: 76806103--76806205 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
76806093 GGGACAAGAT
* *
76806103 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* * *
76806132 TGGCACTAAGTGTGTGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
76806161 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
76806190 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76806206 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 3 0.05
29 56 0.93
30 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:76813403 original size:29 final size:28
Alignment explanation
Indices: 76813371--76813473 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
76813361 GGGACGAGAT
* *
76813371 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
76813400 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
76813429 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
76813458 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76813474 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:76820459 original size:24 final size:24
Alignment explanation
Indices: 76820429--76820476 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
76820419 CTAGACTCAT
76820429 ATGTCCATCCACAATTTTTTTTTC
1 ATGTCCATCCACAATTTTTTTTTC
76820453 ATGTCCATCCACAATTTTTTTTTC
1 ATGTCCATCCACAATTTTTTTTTC
76820477 TAGAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.04, T:0.50
Consensus pattern (24 bp):
ATGTCCATCCACAATTTTTTTTTC
Found at i:76821854 original size:40 final size:40
Alignment explanation
Indices: 76821642--76821847 Score: 378
Period size: 40 Copynumber: 5.2 Consensus size: 40
76821632 AACCCAAGTA
* *
76821642 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76821681 CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76821721 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76821761 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76821801 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76821841 CCTTCGG
1 CCTTCGG
76821848 ATCTTAGTCC
Statistics
Matches: 162, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 13 0.08
40 149 0.92
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76827635 original size:29 final size:29
Alignment explanation
Indices: 76827602--76827666 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
76827592 GTGACGAGAT
76827602 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76827631 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
76827660 CGGCACT
1 TGGCACT
76827667 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76835500 original size:29 final size:29
Alignment explanation
Indices: 76835399--76835492 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
76835389 GTGACGAGAT
76835399 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76835428 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76835457 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
76835486 CGGCACT
1 TGGCACT
76835493 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76835517 original size:58 final size:58
Alignment explanation
Indices: 76835395--76835529 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
76835385 TACGGTGACG
* *
76835395 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
76835452 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
76835510 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
76835530 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:76838316 original size:29 final size:29
Alignment explanation
Indices: 76838215--76838308 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
76838205 GTGACGAGAT
76838215 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76838244 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76838273 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
76838302 CGGCACT
1 TGGCACT
76838309 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76838333 original size:58 final size:58
Alignment explanation
Indices: 76838211--76838345 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
76838201 TACGGTGACG
* *
76838211 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
76838268 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
76838326 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
76838346 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:76846145 original size:29 final size:29
Alignment explanation
Indices: 76846044--76846137 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
76846034 GTGACGAGAT
76846044 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76846073 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76846102 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
76846131 CGGCACT
1 TGGCACT
76846138 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76846162 original size:58 final size:58
Alignment explanation
Indices: 76846040--76846174 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
76846030 TACGGTGACG
* *
76846040 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
76846097 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
76846155 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
76846175 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:76853396 original size:40 final size:40
Alignment explanation
Indices: 76853184--76853386 Score: 336
Period size: 40 Copynumber: 5.1 Consensus size: 40
76853174 AACCCAAGAA
* * *
76853184 CCTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
76853223 CCTTTGGGACTTAGCCCGGACATGGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76853263 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76853303 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76853343 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76853383 CCTT
1 CCTT
76853387 TGGATCTTAG
Statistics
Matches: 152, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 11 0.07
40 141 0.93
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76857666 original size:2 final size:2
Alignment explanation
Indices: 76857659--76857698 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
76857649 TCAATCTCAC
76857659 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76857699 CACATGCCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76857885 original size:40 final size:39
Alignment explanation
Indices: 76857820--76857947 Score: 145
Period size: 38 Copynumber: 3.3 Consensus size: 39
76857810 AAACCAGAAC
* * * *
76857820 ATAACACCAGCACGAAACCTACGGGACTTTAAACTCATAT
1 ATAATACCAGCACGAAGCCTACGGGA-TTTAAACCCAGAT
* * *
76857860 ATAATACCAGCACTAGGCCTGCGGGATTT-AACCCAGAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAAACCCAGAT
76857898 ATAATACCAGCACGAAGCCTACGGGATTT-AACCC-GAAT
1 ATAATACCAGCACGAAGCCTACGGGATTTAAACCCAG-AT
*
76857936 ATAATTCCAGCA
1 ATAATACCAGCA
76857948 TATAGCCTGC
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 51 0.67
39 3 0.04
40 21 0.28
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.20
Consensus pattern (39 bp):
ATAATACCAGCACGAAGCCTACGGGATTTAAACCCAGAT
Found at i:76857909 original size:38 final size:38
Alignment explanation
Indices: 76857858--76857960 Score: 138
Period size: 38 Copynumber: 2.7 Consensus size: 38
76857848 TTAAACTCAT
*
76857858 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCC-A
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
* *
76857895 GATATAATACCAGCACGAAGCCTACGGGATTTAACCCGA
1 -ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
*
76857934 ATATAATTCCAGCA-TATAGCCTGCGGG
1 ATATAATACCAGCACTA-AGCCTGCGGG
76857961 TTTTTAAGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
37 1 0.02
38 55 0.96
39 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
Found at i:76860934 original size:26 final size:26
Alignment explanation
Indices: 76860905--76860958 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
76860895 CACCTGCTAA
* *
76860905 GCTCGAAGCCCGATATTAACTCACCG
1 GCTCAAAGCCCAATATTAACTCACCG
*
76860931 GCTCAAAGCCTAATATTAACTCACCG
1 GCTCAAAGCCCAATATTAACTCACCG
76860957 GC
1 GC
76860959 ATTATAGCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (26 bp):
GCTCAAAGCCCAATATTAACTCACCG
Found at i:76867469 original size:47 final size:47
Alignment explanation
Indices: 76867400--76867571 Score: 219
Period size: 47 Copynumber: 3.7 Consensus size: 47
76867390 GGATGGTTGA
76867400 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
76867447 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GA--GATGTAACTAG
76867495 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
* *
76867540 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
76867572 ACTTATGGAT
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 29 0.27
47 59 0.56
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:76867517 original size:46 final size:46
Alignment explanation
Indices: 76867450--76867625 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
76867440 TAACTAGGCA
* *
76867450 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *** * ** ** *
76867496 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* *
76867543 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
76867589 CCCGAGCTCGTTGGGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76867626 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
46 69 0.68
47 33 0.32
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:76867543 original size:93 final size:93
Alignment explanation
Indices: 76867403--76867617 Score: 367
Period size: 93 Copynumber: 2.3 Consensus size: 93
76867393 TGGTTGAGCA
76867403 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
*
76867468 AGTCCGAGTTCACTTATGGATGCAAATG
66 AGTCCGAGTTCACTTATGGATGCAAACG
76867496 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
* **
76867561 AGTCTGAGTTCACTTATGGATGTGAACG
66 AGTCCGAGTTCACTTATGGATGCAAACG
* * *
76867589 CCCGAGCTCGTTGGGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
76867618 ACTTATGGGC
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 115 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
AGTCCGAGTTCACTTATGGATGCAAACG
Found at i:76872715 original size:21 final size:18
Alignment explanation
Indices: 76872678--76872725 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 18
76872668 GAACCTTTGG
76872678 TTCAAGTTTTCAATCTCATA
1 TTCAA-TTTTCAATCTCA-A
76872698 TCTCAATTTTCAATTCTCAA
1 T-TCAATTTTCAA-TCTCAA
76872718 TTCAATTT
1 TTCAATTT
76872726 CTCGTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.27
20 10 0.38
21 9 0.35
ACGTcount: A:0.29, C:0.21, G:0.02, T:0.48
Consensus pattern (18 bp):
TTCAATTTTCAATCTCAA
Found at i:76873390 original size:15 final size:15
Alignment explanation
Indices: 76873372--76873412 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
76873362 TTAAATAAAT
76873372 ATAAATTCAATCAAA
1 ATAAATTCAATCAAA
* *
76873387 ATAATTTCAATCAAT
1 ATAAATTCAATCAAA
76873402 ATAAATTCAAT
1 ATAAATTCAAT
76873413 AAATTCATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAAATTCAATCAAA
Found at i:76874122 original size:25 final size:27
Alignment explanation
Indices: 76874088--76874148 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
76874078 AAAACTTCAA
* *
76874088 TTCCTCCTTT-TTTCTCTT-TCTCTTT
1 TTCCTTCTTTCTTTCCCTTATCTCTTT
*
76874113 TTCCTTCTTTCTTTCCCTTATCTGTTT
1 TTCCTTCTTTCTTTCCCTTATCTCTTT
*
76874140 TTCGTTCTT
1 TTCCTTCTT
76874149 CACTCTGTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 9 0.30
26 7 0.23
27 14 0.47
ACGTcount: A:0.02, C:0.30, G:0.03, T:0.66
Consensus pattern (27 bp):
TTCCTTCTTTCTTTCCCTTATCTCTTT
Found at i:76876052 original size:47 final size:46
Alignment explanation
Indices: 76875932--76876062 Score: 135
Period size: 47 Copynumber: 2.8 Consensus size: 46
76875922 GGGTTATGTG
*
76875932 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT--GACA
* * *
76875980 AGAGCTAGAGTAAGA--AGTGTTTGGGACAT-GCATCAGCCACATT-ACA
1 AGAGCCAGTGTAAGACCA-TGTCTGGGACATGGCATC-G--ACATTGACA
*
76876026 ATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
76876063 GCGTAGAGAT
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
46 20 0.29
47 24 0.35
48 19 0.28
49 5 0.07
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.21
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACA
Found at i:76877056 original size:55 final size:55
Alignment explanation
Indices: 76876990--76877095 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
76876980 CTTAAACTTT
*
76876990 TAAGTCAGTATTGTCGACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGTCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGTCTA
* * * *
76877045 TAAGTCAGTATTGTCCATGGGTAGGTCACACGGGCGTGTGTCATGGCCGTG
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTG
76877096 CCCTAAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.19, C:0.22, G:0.34, T:0.25
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGTCTA
Found at i:76881333 original size:38 final size:38
Alignment explanation
Indices: 76881274--76881436 Score: 241
Period size: 38 Copynumber: 4.4 Consensus size: 38
76881264 TCAATCATGC
*
76881274 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
76881313 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
76881351 ACTGGGCCGAAGCCTTTTCATATTTC--A--T-AT--T
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
*
76881382 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
76881420 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
76881437 ACTGTAAACG
Statistics
Matches: 113, Mismatches: 4, Indels: 15
0.86 0.03 0.11
Matches are distributed among these distances:
31 26 0.23
33 3 0.03
34 1 0.01
35 1 0.01
36 3 0.03
38 68 0.60
39 11 0.10
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:76881339 original size:31 final size:31
Alignment explanation
Indices: 76881297--76881410 Score: 147
Period size: 31 Copynumber: 3.5 Consensus size: 31
76881287 CCTTTTCATA
76881297 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
76881334 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
76881366 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
76881397 TTTCATGTTTCATA
1 TTTCATATTTCATA
76881411 TTTCATAATA
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
31 43 0.58
32 1 0.01
33 1 0.01
37 1 0.01
38 28 0.38
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:76881408 original size:69 final size:69
Alignment explanation
Indices: 76881297--76881436 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
76881287 CCTTTTCATA
76881297 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
76881362 GCCT
66 GCCT
*
76881366 TTTCATATTTCATATTACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
76881431 GCCT
66 GCCT
76881435 TT
1 TT
76881437 ACTGTAAACG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (69 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
GCCT
Found at i:76881674 original size:24 final size:24
Alignment explanation
Indices: 76881628--76881722 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
76881618 GCTTTATCAT
*
76881628 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
76881653 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
76881677 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
76881700 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76881723 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:76881707 original size:47 final size:49
Alignment explanation
Indices: 76881628--76881721 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
76881618 GCTTTATCAT
*
76881628 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
76881677 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
76881722 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:76881798 original size:20 final size:20
Alignment explanation
Indices: 76881773--76881832 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
76881763 TATGATTACC
76881773 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
** *
76881793 TCATGTGTGTATCATACATT
1 TCATGTGCATATCATACATA
76881813 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
76881833 CCATATTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:76881907 original size:25 final size:25
Alignment explanation
Indices: 76881875--76881922 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76881865 ATACATAAAC
* * *
76881875 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
76881900 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
76881923 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:76889655 original size:38 final size:38
Alignment explanation
Indices: 76889596--76889758 Score: 241
Period size: 38 Copynumber: 4.4 Consensus size: 38
76889586 TCAATCATGC
*
76889596 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
76889635 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
76889673 ACTGGGCCGAAGCCTTTTCATATTTC--A--T-AT--T
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
*
76889704 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
76889742 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
76889759 ACTGTAAACG
Statistics
Matches: 113, Mismatches: 4, Indels: 15
0.86 0.03 0.11
Matches are distributed among these distances:
31 26 0.23
33 3 0.03
34 1 0.01
35 1 0.01
36 3 0.03
38 68 0.60
39 11 0.10
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:76889661 original size:31 final size:31
Alignment explanation
Indices: 76889619--76889732 Score: 147
Period size: 31 Copynumber: 3.5 Consensus size: 31
76889609 CCTTTTCATA
76889619 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
76889656 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
76889688 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
76889719 TTTCATGTTTCATA
1 TTTCATATTTCATA
76889733 TTTCATAATA
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
31 43 0.58
32 1 0.01
33 1 0.01
37 1 0.01
38 28 0.38
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Done.