Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 258 of 328
Found at i:76889730 original size:69 final size:69
Alignment explanation
Indices: 76889619--76889758 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
76889609 CCTTTTCATA
76889619 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
76889684 GCCT
66 GCCT
*
76889688 TTTCATATTTCATATTACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
76889753 GCCT
66 GCCT
76889757 TT
1 TT
76889759 ACTGTAAACG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (69 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
GCCT
Found at i:76889996 original size:24 final size:24
Alignment explanation
Indices: 76889950--76890044 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
76889940 GCTTTATCAT
*
76889950 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
76889975 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
76889999 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
76890022 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
76890045 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:76890029 original size:47 final size:49
Alignment explanation
Indices: 76889950--76890043 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
76889940 GCTTTATCAT
*
76889950 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
76889999 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
76890044 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:76890120 original size:20 final size:20
Alignment explanation
Indices: 76890095--76890154 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
76890085 TATGATTACC
76890095 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* * *
76890115 TCATGTGCGTGTCATACATT
1 TCATGTGCATATCATACATA
76890135 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
76890155 CCATATTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:76890229 original size:25 final size:25
Alignment explanation
Indices: 76890197--76890244 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76890187 ATACATAAAC
* * *
76890197 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
76890222 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
76890245 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:76897028 original size:118 final size:114
Alignment explanation
Indices: 76896791--76897014 Score: 256
Period size: 118 Copynumber: 1.9 Consensus size: 114
76896781 GTTTTTAGTT
76896791 TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
1 TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
*
76896856 TTTTAGGATTAGTGTTAATTTAATCATATTTTATTTGATAAGTTTTTAATAA
66 TTTTAGAATTAGTGTTAATTTAATCATATTTTATTT-AT-AG-TTTTAATAA
* *
76896908 TAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAATCT-TT
1 TAATAA-AAAATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATATTAAT-TATT
* *
76896971 ATCGATTTAGCATAGAATTAG-GATTAGTTTTAATCATATTTTAT
61 ATCAATTT----TAGAATTAGTG-TTA-ATTTAATCATATTTTAT
76897015 CTTTGTTTAA
Statistics
Matches: 91, Mismatches: 5, Indels: 14
0.83 0.05 0.13
Matches are distributed among these distances:
117 6 0.07
118 35 0.38
119 1 0.01
120 20 0.22
121 1 0.01
123 1 0.01
124 11 0.12
125 16 0.18
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (114 bp):
TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
TTTTAGAATTAGTGTTAATTTAATCATATTTTATTTATAGTTTTAATAA
Found at i:76897562 original size:3 final size:3
Alignment explanation
Indices: 76897554--76897629 Score: 143
Period size: 3 Copynumber: 25.0 Consensus size: 3
76897544 CTTTTCCTTC
76897554 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
76897600 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
76897630 TATTTCTACA
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 69 0.96
4 3 0.04
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:76897714 original size:25 final size:24
Alignment explanation
Indices: 76897667--76897720 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
76897657 TAGTTTTCTC
*
76897667 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
76897691 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
76897716 TTAAT
1 TTAAT
76897721 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:76904794 original size:20 final size:20
Alignment explanation
Indices: 76904766--76904803 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76904756 CTAAGAACTA
76904766 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
76904786 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
76904804 TATATGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:76907567 original size:11 final size:11
Alignment explanation
Indices: 76907551--76907575 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76907541 CAGACTTCAC
76907551 ATTTTAATGAT
1 ATTTTAATGAT
76907562 ATTTTAATGAT
1 ATTTTAATGAT
76907573 ATT
1 ATT
76907576 ATTAGCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (11 bp):
ATTTTAATGAT
Found at i:76909440 original size:22 final size:22
Alignment explanation
Indices: 76909410--76909451 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
76909400 GTTTGTCAAT
*
76909410 GGAACAGGT-TGAAGAATGGAGA
1 GGAAAAGGTATGAAG-ATGGAGA
76909432 GGAAAAGGTATGAAGATGGA
1 GGAAAAGGTATGAAGATGGA
76909452 AGAAGAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.43, C:0.02, G:0.40, T:0.14
Consensus pattern (22 bp):
GGAAAAGGTATGAAGATGGAGA
Found at i:76911833 original size:37 final size:37
Alignment explanation
Indices: 76911787--76911860 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
76911777 TTCAAAAAGA
*
76911787 TTGTTTAATTCTCATTCATCCTACTTTTACATTTTGT
1 TTGTTTAATTCTCAATCATCCTACTTTTACATTTTGT
76911824 TTGTTTAATTCTCAATCATCCTACTTTTACATTTTGT
1 TTGTTTAATTCTCAATCATCCTACTTTTACATTTTGT
76911861 CTGGCATTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.20, C:0.19, G:0.05, T:0.55
Consensus pattern (37 bp):
TTGTTTAATTCTCAATCATCCTACTTTTACATTTTGT
Found at i:76914150 original size:21 final size:20
Alignment explanation
Indices: 76914120--76914158 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
76914110 TAAAACCTGT
76914120 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
76914140 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
76914159 CAAAATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:76916143 original size:27 final size:27
Alignment explanation
Indices: 76916103--76916214 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
76916093 AGGAAGCGTC
*
76916103 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
76916130 CTGGTGGCTTTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
76916157 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
76916185 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
76916211 CTGG
1 CTGG
76916215 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.65
28 17 0.24
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:76916209 original size:54 final size:54
Alignment explanation
Indices: 76916103--76916214 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
76916093 AGGAAGCGTC
* * * *
76916103 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATTTCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
76916157 CTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
76916211 CTGG
1 CTGG
76916215 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:76917284 original size:11 final size:10
Alignment explanation
Indices: 76917256--76917289 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
76917246 AGCCTGTAAG
76917256 TATTCTGAAT
1 TATTCTGAAT
*
76917266 TTTTCTGAAT
1 TATTCTGAAT
76917276 ATATTCTGAAT
1 -TATTCTGAAT
76917287 TAT
1 TAT
76917290 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:76923954 original size:27 final size:27
Alignment explanation
Indices: 76923914--76924019 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
76923904 AGGAAGCGTC
*
76923914 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
76923941 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
76923968 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
76923996 CTGGTGACTCTGTCAC-ATTATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
76924020 TTCTAGCAGC
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.04
27 49 0.70
28 18 0.26
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:76924020 original size:54 final size:54
Alignment explanation
Indices: 76923914--76924023 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
76923904 AGGAAGCGTC
* *
76923914 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
76923968 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
76924022 CT
1 CT
76924024 AGCAGCCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:76929730 original size:23 final size:23
Alignment explanation
Indices: 76929700--76929743 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
76929690 CTAGAAGTAA
*
76929700 TGATTACTTATATAATAGTTTCT
1 TGATTACTTATAAAATAGTTTCT
76929723 TGATTACTTATAAAATAGTTT
1 TGATTACTTATAAAATAGTTT
76929744 GGAGTATACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (23 bp):
TGATTACTTATAAAATAGTTTCT
Found at i:76932750 original size:40 final size:38
Alignment explanation
Indices: 76932700--76932851 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 38
76932690 ATGAGAAATT
* * *
76932700 GAATGATATCCGGGCTAAGTCCCGAAGACGTTAATGCTG
1 GAATTATATCCGGGCTAAGACCCGAAGACATT-ATGCTG
* * *
76932739 GAAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG
1 G-AATTATATCCGGGCTAAGACCCGAAGAC-ATTATGCT-G
** * * *
76932780 TGGCTT-CATCCGGGCTAAGTCCCGAGGACATTTATGCTAG
1 -GAATTATATCCGGGCTAAGACCCGAAGACA-TTATGCT-G
* *
76932820 TAATTATATCCGGGCTAAGACCCGAAGGCATT
1 GAATTATATCCGGGCTAAGACCCGAAGACATT
76932852 CGTGCAAGTT
Statistics
Matches: 86, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
39 6 0.07
40 74 0.86
41 5 0.06
42 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (38 bp):
GAATTATATCCGGGCTAAGACCCGAAGACATTATGCTG
Found at i:76932840 original size:80 final size:80
Alignment explanation
Indices: 76932707--76932892 Score: 234
Period size: 80 Copynumber: 2.3 Consensus size: 80
76932697 ATTGAATGAT
* * * * *
76932707 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGC-AT
* *
76932772 T-GTGCTAGTGGCTT-C
65 TCGTGCAAGTGG-TTAA
*
76932787 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
*
76932852 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
*
76932867 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGTCCCG-AGGACATTT
76932893 GTGCAAATCG
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 5 0.05
80 85 0.91
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:76932871 original size:40 final size:40
Alignment explanation
Indices: 76932747--76932898 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
76932737 TGGAAATTAT
* * * * *
76932747 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTT-C
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAG-TTAA
* * * * *
76932787 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAGTTAA
* *
76932827 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
76932867 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
76932899 ATCGTGATAT
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 5 0.05
40 86 0.91
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
Found at i:76932909 original size:80 final size:80
Alignment explanation
Indices: 76932745--76932918 Score: 201
Period size: 80 Copynumber: 2.2 Consensus size: 80
76932735 GCTGGAAATT
* * *
76932745 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTTCATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTTAATCCGGGCTAAGACCCGAGGACA
* * *
76932810 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* *
76932825 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTAAATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTT-AATCCGGGCTAAGACCCG-AGG
* **
76932888 -CATTTGTGCAAATCGTG
63 ACATTTATGCAAATAATG
76932905 ATATCCGGGTTAAG
1 ATATCCGGGTTAAG
76932919 TCCTGTAGGC
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
79 5 0.06
80 71 0.90
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTTAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:76932911 original size:40 final size:39
Alignment explanation
Indices: 76932745--76932918 Score: 154
Period size: 40 Copynumber: 4.4 Consensus size: 39
76932735 GCTGGAAATT
* * *
76932745 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG-G
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTG
* * * * * *
76932783 CTTCATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATT
1 -AT-ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT-GTG
* *
76932825 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTG
* *
76932865 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTG
*
76932905 ATATCCGGGTTAAG
1 ATATCCGGGCTAAG
76932919 TCCTGTAGGC
Statistics
Matches: 109, Mismatches: 19, Indels: 13
0.77 0.13 0.09
Matches are distributed among these distances:
39 5 0.05
40 99 0.91
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTG
Found at i:76940702 original size:39 final size:39
Alignment explanation
Indices: 76940648--76940810 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
76940638 TGTGAATGAA
76940648 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
76940687 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
76940726 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
76940765 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
76940805 TGTGCG
1 TGTGCG
76940811 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:76940826 original size:40 final size:39
Alignment explanation
Indices: 76940648--76940840 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
76940638 TGTGAATGAA
* *
76940648 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
76940687 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
76940726 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
76940765 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
76940805 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
76940841 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:76947409 original size:40 final size:40
Alignment explanation
Indices: 76947299--76947483 Score: 158
Period size: 40 Copynumber: 4.7 Consensus size: 40
76947289 ATTGAATGAT
* * * * * * * *
76947299 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAGTTAA
* * * * * *
76947339 ATCC-GGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAGTTAA
* * *
76947378 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CATTTATGCTAGTAGTTAA
** * *
76947418 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAGTTAA
76947458 ATCCGGGCTAAGACCCGAAGGCATTT
1 ATCCGGGCTAAGACCCGAAGGCATTT
76947484 GTGCAAATCG
Statistics
Matches: 113, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
39 29 0.26
40 81 0.72
41 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAGTTAA
Found at i:76947475 original size:80 final size:79
Alignment explanation
Indices: 76947299--76947483 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 79
76947289 ATTGAATGAT
* * * * *
76947299 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGCTAAGACCCGAAGGCAATT
* *
76947364 GTGCTAGTGGCTAC
66 GTGCAAGTGGCTAA
*
76947378 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-AT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCC-GGCTAAGACCCGAAGGCAAT
* *
76947442 TCGTGCAAGTTGTTAA
65 T-GTGCAAGTGGCTAA
*
76947458 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGTCCCG-AGGACATTT
76947484 GTGCAAATCG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 42 0.46
80 47 0.51
81 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGCTAAGACCCGAAGGCAATT
GTGCAAGTGGCTAA
Found at i:76947488 original size:40 final size:40
Alignment explanation
Indices: 76947346--76947489 Score: 164
Period size: 40 Copynumber: 3.6 Consensus size: 40
76947336 TATATCCGGT
* * * * *
76947346 TAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCAAGTAGTTAAATCCGGGC
* * * * *
76947386 TAAGTCCCG-AGGACATTTATGCTAGTAATTATATCCGGGC
1 TAAGACCCGAAGG-CATTTGTGCAAGTAGTTAAATCCGGGC
* *
76947426 TAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCAAGTAGTTAAATCCGGGC
76947466 TAAGACCCGAAGGCATTTGTGCAA
1 TAAGACCCGAAGGCATTTGTGCAA
76947490 ATCGTGATAT
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 81 0.93
41 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCAAGTAGTTAAATCCGGGC
Found at i:76947500 original size:80 final size:80
Alignment explanation
Indices: 76947337--76947509 Score: 199
Period size: 80 Copynumber: 2.2 Consensus size: 80
76947327 GCTGGAAATT
* * *
76947337 ATATCC-GGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
76947401 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* * *
76947416 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* **
76947479 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAATG
76947496 ATATCCGGGTTAAG
1 ATATCCGGGTTAAG
76947510 TCCTGTAGGC
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 9 0.12
80 66 0.85
81 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:76947502 original size:40 final size:38
Alignment explanation
Indices: 76947336--76947509 Score: 145
Period size: 40 Copynumber: 4.4 Consensus size: 38
76947326 TGCTGGAAAT
* * *
76947336 TATATCC-GGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * * *
76947374 CTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAAT
1 -TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT--G
*
76947415 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG
* *
76947454 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
*
76947494 TGATATCCGGGTTAAG
1 T-ATATCCGGGCTAAG
76947510 TCCTGTAGGC
Statistics
Matches: 109, Mismatches: 18, Indels: 15
0.77 0.13 0.11
Matches are distributed among these distances:
39 11 0.10
40 94 0.86
41 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG
Found at i:76950314 original size:26 final size:26
Alignment explanation
Indices: 76950258--76950364 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
76950248 TGGTACAAAT
76950258 TGATAATGGGTTAGGTAAAT-TTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
76950283 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76950309 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76950335 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76950361 TGAT
1 TGAT
76950365 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
25 19 0.25
26 58 0.75
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76952139 original size:21 final size:21
Alignment explanation
Indices: 76952091--76952139 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
76952081 ATTCCCCACA
76952091 TGGAGTGTAAGGCTGGTACGGG
1 TGGAGTGTAAGGCTGGTA-GGG
*
76952113 TGGAGTGTAATGGTTGGT-GGG
1 TGGAGTGTAA-GGCTGGTAGGG
*
76952134 TTGAGT
1 TGGAGT
76952140 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 10 0.42
23 6 0.25
ACGTcount: A:0.16, C:0.04, G:0.49, T:0.31
Consensus pattern (21 bp):
TGGAGTGTAAGGCTGGTAGGG
Found at i:76953773 original size:2 final size:2
Alignment explanation
Indices: 76953758--76953816 Score: 68
Period size: 2 Copynumber: 30.0 Consensus size: 2
76953748 TGGAAATAAT
* * *
76953758 TA TA TA TG TT TA TA TA TA CT- TA -A TA TG TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
76953799 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
76953817 GATGATTGGA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
1 2 0.04
2 46 0.94
3 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:76957866 original size:21 final size:21
Alignment explanation
Indices: 76957842--76957890 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
76957832 GCTTAGCCCA
* *
76957842 TGTGGCTTGGAAACATGACTG
1 TGTGGCCTGGAAACATGACCG
76957863 TGTGGCCTGGAAACATGACCG
1 TGTGGCCTGGAAACATGACCG
76957884 TGTGGCC
1 TGTGGCC
76957891 AAACCATGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.35, T:0.24
Consensus pattern (21 bp):
TGTGGCCTGGAAACATGACCG
Found at i:76958640 original size:18 final size:18
Alignment explanation
Indices: 76958601--76958698 Score: 137
Period size: 18 Copynumber: 5.5 Consensus size: 18
76958591 AATGATATGT
76958601 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
76958618 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
76958636 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
76958653 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
76958671 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
*
76958690 AATATTAGA
1 AATCTTAGA
76958699 AGATATGATT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
17 29 0.41
18 32 0.45
19 10 0.14
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:76958640 original size:35 final size:35
Alignment explanation
Indices: 76958592--76958686 Score: 163
Period size: 35 Copynumber: 2.7 Consensus size: 35
76958582 ATAATATTTA
*
76958592 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
76958628 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
76958663 ATGATTGCAATCTTAGATATGATA
1 ATGATTGCAATCTTAGATATGATA
76958687 TACAATATTA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
35 52 0.91
36 5 0.09
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:76959201 original size:17 final size:17
Alignment explanation
Indices: 76959181--76959242 Score: 51
Period size: 17 Copynumber: 3.7 Consensus size: 17
76959171 CCAATATATT
76959181 TTATATATTTTATATAA
1 TTATATATTTTATATAA
76959198 TTAT-TATTCTTATA-AA
1 TTATATATT-TTATATAA
* *
76959214 -TATAT-TTTTTTATTA
1 TTATATATTTTATATAA
76959229 TATATTATATTTTA
1 T-TA-TATATTTTA
76959243 AATTTATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
14 4 0.11
15 6 0.17
16 7 0.20
17 11 0.31
18 3 0.09
19 4 0.11
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TTATATATTTTATATAA
Found at i:76961194 original size:20 final size:20
Alignment explanation
Indices: 76961169--76961229 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
76961159 CGAACTACAT
*
76961169 ACAGAGGTATTGAAGTGCAA
1 ACAGAGGCATTGAAGTGCAA
***
76961189 ACAGAGGCACCAAAGTGCAA
1 ACAGAGGCATTGAAGTGCAA
*
76961209 AAAGAGGCATTGAAGTGCAA
1 ACAGAGGCATTGAAGTGCAA
76961229 A
1 A
76961230 GCCCATACAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.28, T:0.13
Consensus pattern (20 bp):
ACAGAGGCATTGAAGTGCAA
Found at i:76961197 original size:40 final size:40
Alignment explanation
Indices: 76961153--76961229 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
76961143 AAGCTGAAAA
* * * *
76961153 AGGCACCGAACTACATACAGAGGTATTGAAGTGCAAACAG
1 AGGCACCAAACTACAAAAAGAGGCATTGAAGTGCAAACAG
* *
76961193 AGGCACCAAAGTGCAAAAAGAGGCATTGAAGTGCAAA
1 AGGCACCAAACTACAAAAAGAGGCATTGAAGTGCAAA
76961230 GCCCATACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.43, C:0.18, G:0.26, T:0.13
Consensus pattern (40 bp):
AGGCACCAAACTACAAAAAGAGGCATTGAAGTGCAAACAG
Found at i:76962293 original size:69 final size:69
Alignment explanation
Indices: 76962212--76962348 Score: 247
Period size: 69 Copynumber: 2.0 Consensus size: 69
76962202 ACTAAGAATT
*
76962212 TTTTTTTATGTTTTTATGTTTTAACTAATGTTTATAATTTTAATTAATTAACAAATACATTATTT
1 TTTTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTT
76962277 TAAA
66 TAAA
* *
76962281 TTTTTTTATGTTTTTATGTTTTAACTCATATTTATAATTTTAGTTAATTAACAAATACATTATTT
1 TTTTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTT
76962346 TAA
66 TAA
76962349 TTAAAACAAC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (69 bp):
TTTTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTT
TAAA
Found at i:76962911 original size:336 final size:336
Alignment explanation
Indices: 76962292--76962947 Score: 1035
Period size: 336 Copynumber: 2.0 Consensus size: 336
76962282 TTTTTTATGT
* * *
76962292 TTTTATGTTTTAACTCATATTTATAATTTTAGTTAATTAACAAATACATTATTTTAATTAAAACA
1 TTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAA
* * * ** *
76962357 ACATCAAATACCGTCCAGCAACCTTAATAATGGCTTAATTGTCCCTGTAAATCCACTCACGTTTA
66 ACATAAAATACCGTCCACCAACCTTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTTA
* * * *
76962422 CTCACTAAATCATTTAATTAATAAAATTTAATAGTGATTAAGTTTTACATATTTTACGATTTAGT
131 CTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAGT
* *
76962487 CATTTTTCTTTAATTAACTAACTAAGCGTTAAAATTTCCGAACCAAAACTCAACATATCAATGTA
196 CATTTTTCTTTAATTAACTAACTAAACATTAAAATTTCCGAACCAAAACTCAACATATCAATGTA
* * * *
76962552 ATAACTCCGCAAATATTTACTAAAAATATTTATAGGCTCATTTTTCATAAACGAGGTCTCACTTA
261 ATAACTCCGCAAATATCTACTAAAAATATTTACAAGCTCAATTTTCATAAACGAGGTCTCACTTA
76962617 CATGATAATTG
326 CATGATAATTG
* * *
76962628 TTTTATGTTTTTACTAATGTTTTTAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAA
1 TTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTAATT-AAAAA
* *
76962693 AACATAAAATACCGTCCACCAACCTTTATAATGGCTTAAGTG-CCCCATAATTCCACTCACATTT
65 AACATAAAATACCGTCCACCAACCTTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTT
*
76962757 ACTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATCTTTTACGATTTAG
130 ACTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAG
* * *
76962822 TCCTTTTTCTTTAATTAACTAGCTAAACATTAAAATTTTCGAACCAAAACTCAACATATCAATGT
195 TCATTTTTCTTTAATTAACTAACTAAACATTAAAATTTCCGAACCAAAACTCAACATATCAATGT
*
76962887 AATAACTCCGTAAATATCTACTAAAAATATTTACAAGCTCAATTTTCATAAACGAGGTCTC
260 AATAACTCCGCAAATATCTACTAAAAATATTTACAAGCTCAATTTTCATAAACGAGGTCTC
76962948 GATACCTCAT
Statistics
Matches: 290, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
336 248 0.86
337 42 0.14
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (336 bp):
TTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAA
ACATAAAATACCGTCCACCAACCTTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTTA
CTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAGT
CATTTTTCTTTAATTAACTAACTAAACATTAAAATTTCCGAACCAAAACTCAACATATCAATGTA
ATAACTCCGCAAATATCTACTAAAAATATTTACAAGCTCAATTTTCATAAACGAGGTCTCACTTA
CATGATAATTG
Found at i:76967878 original size:40 final size:40
Alignment explanation
Indices: 76967819--76968026 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
76967809 CAATTGAATG
* * * *
76967819 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
76967859 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
76967899 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
76967939 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
76967979 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
76968019 ATATCCGG
1 ATATCCGG
76968027 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:76967957 original size:80 final size:80
Alignment explanation
Indices: 76967820--76968026 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
76967810 AATTGAATGA
* * ** * * *
76967820 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
76967885 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
76967898 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
76967963 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
76967980 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
76968027 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:76969788 original size:29 final size:29
Alignment explanation
Indices: 76969753--76969826 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76969743 GTTGTGAGAT
* *
76969753 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76969782 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76969811 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76969827 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76974409 original size:40 final size:39
Alignment explanation
Indices: 76974364--76974571 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 39
76974354 CGGATTACAA
*
76974364 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
76974404 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76974444 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
76974484 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
76974524 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
76974564 CCGGATAT
1 CCGGATAT
76974572 CATTCAATTG
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 1 0.01
40 144 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76974504 original size:80 final size:80
Alignment explanation
Indices: 76974364--76974571 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 80
76974354 CGGATTACAA
* * *
76974364 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
76974429 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
76974444 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
76974508 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * * *
76974524 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
76974572 CATTCAATTG
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 109 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:76982541 original size:40 final size:39
Alignment explanation
Indices: 76982496--76982702 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
76982486 CGGATTACAA
*
76982496 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
76982536 CCGGATATAACGACTTGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
76982575 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
76982615 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
76982655 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
76982695 CCGGATAT
1 CCGGATAT
76982703 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 36 0.25
40 107 0.75
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76982614 original size:79 final size:80
Alignment explanation
Indices: 76982496--76982702 Score: 256
Period size: 79 Copynumber: 2.6 Consensus size: 80
76982486 CGGATTACAA
* * *
76982496 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGAC-ACTAGCACAAAT
*
76982560 GCCTTC-GGTATTAGC
65 GCCTTCGGGTATTAAC
* * * *
76982575 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAATTG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGACACTAGCACAAATG
*
76982640 CCTTCGGGTCTTAAC
66 CCTTCGGGTATTAAC
** * * * *
76982655 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
76982703 CATTCAATTG
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
79 61 0.56
80 48 0.44
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGACACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:76989257 original size:29 final size:29
Alignment explanation
Indices: 76989222--76989295 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76989212 GTTGTGAGAT
* *
76989222 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76989251 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76989280 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76989296 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77006465 original size:44 final size:43
Alignment explanation
Indices: 77006409--77006513 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
77006399 AATTATCGTA
* * * *
77006409 TAAGACCGTGTTTGGGACACTGGCATCGAT-TTGAAATTTACGTG
1 TAAGACCATGTTTGGGACACAGGCATCGATACTG-AA-TTACATG
*
77006453 TAAGACCATGTTTGGGACAGAGGCATCGATACTGAATTACATG
1 TAAGACCATGTTTGGGACACAGGCATCGATACTGAATTACATG
* *
77006496 TAAGACCACGTCTGGGAC
1 TAAGACCATGTTTGGGAC
77006514 GTCAACATTG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 22 0.42
44 29 0.55
45 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTTTGGGACACAGGCATCGATACTGAATTACATG
Found at i:77010187 original size:17 final size:17
Alignment explanation
Indices: 77010158--77010190 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
77010148 AATAAACATC
77010158 TCAATTAATTTCTTAAT
1 TCAATTAATTTCTTAAT
77010175 TCAA-TAATCTTCTTAA
1 TCAATTAAT-TTCTTAA
77010191 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TCAATTAATTTCTTAAT
Found at i:77010422 original size:57 final size:57
Alignment explanation
Indices: 77010352--77010531 Score: 265
Period size: 57 Copynumber: 3.1 Consensus size: 57
77010342 ATTTCCAAAT
77010352 CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
1 CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
* * * *
77010409 CATTTTCTTTTTCATTTAGGAGAAAACGATATTCATTTCTAAATGTTTCCATTTCTC
1 CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
* *
77010466 CATTTTCATTTTCATTTTA-GAGAAAACCATA-ACAATTTTCAAATGTTTATCATTTCTC
1 CATTTTCATTTTCA-TTTAGGAGAAAACCATATTC-ATTTCCAAATGTTT-TCATTTCTC
77010524 CATTTTCA
1 CATTTTCA
77010532 CAATTTCTAT
Statistics
Matches: 110, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
56 1 0.01
57 89 0.81
58 20 0.18
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.46
Consensus pattern (57 bp):
CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
Found at i:77012451 original size:37 final size:37
Alignment explanation
Indices: 77012367--77012464 Score: 108
Period size: 37 Copynumber: 2.7 Consensus size: 37
77012357 ATTATATACC
* *
77012367 GAATGAAGTTC-AATGAGCAATATCCACCGATATATT
1 GAATGAAGCTCAAATGAGCAATATCCACCAATATATT
* *
77012403 GAATGAAGCTCAAATGAGCATTATCCACTAATATATT
1 GAATGAAGCTCAAATGAGCAATATCCACCAATATATT
* ** * *
77012440 GACTGGTGCTCAAACGAGCGATATC
1 GAATGAAGCTCAAATGAGCAATATC
77012465 AATTATGTGC
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
36 10 0.20
37 41 0.80
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (37 bp):
GAATGAAGCTCAAATGAGCAATATCCACCAATATATT
Found at i:77012512 original size:40 final size:40
Alignment explanation
Indices: 77012468--77012665 Score: 234
Period size: 40 Copynumber: 5.0 Consensus size: 40
77012458 CGATATCAAT
*
77012468 TATGTGCTTTTGAGCCATACCTACTGAATCTACTAAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * *
77012508 TATGTGCTTTTGAGCCATGCCTTCTGAATCTACTGAAACA
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * *
77012548 TATGTGCTTTCGAACCATACCTACTGAATCTATTGAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * * * *
77012588 TATGCGCTTTTGAGCCATACCAACCGATTCCATTGAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * **
77012628 TATGCGCTATTGAGCCTTACCTACTGCTTCTACTGAAA
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAA
77012666 GCATGCTTTA
Statistics
Matches: 134, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (40 bp):
TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
Found at i:77017046 original size:19 final size:19
Alignment explanation
Indices: 77017022--77017059 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
77017012 GTATGTTGTG
77017022 TTTAAATTTATACAAACTT
1 TTTAAATTTATACAAACTT
*
77017041 TTTAAATTTATACGAACTT
1 TTTAAATTTATACAAACTT
77017060 ACTAAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTAAATTTATACAAACTT
Found at i:77018527 original size:74 final size:75
Alignment explanation
Indices: 77018405--77018557 Score: 209
Period size: 74 Copynumber: 2.1 Consensus size: 75
77018395 AAAGGGCCAT
* *
77018405 GGCCCCCTAAGGTTTAAATTTTTTTTCAATTTAGCCCTTTGTAGATATACTATGGCCCACCCAAA
1 GGCCCCCTAAGGTTTAAATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAAA
*
77018470 AATATAAGTA
66 AATACAAGTA
* **** * *
77018480 GGCCCCCTAAGGTTTAAGTTTTTTGT-AATTTTTTTCTTTGTATATATACTATAGCCCTCCCAAA
1 GGCCCCCTAAGGTTTAAATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAAA
77018544 AATACAAGTA
66 AATACAAGTA
77018554 GGCC
1 GGCC
77018558 ATTCCAATAT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
74 44 0.65
75 24 0.35
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (75 bp):
GGCCCCCTAAGGTTTAAATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAAA
AATACAAGTA
Found at i:77024068 original size:29 final size:28
Alignment explanation
Indices: 77024034--77024136 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
77024024 TAATCGATCA
*
77024034 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
77024063 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
77024092 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
77024121 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
77024137 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:77029744 original size:28 final size:29
Alignment explanation
Indices: 77029699--77029753 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
77029689 CAAAAAGTAT
*
77029699 TTTATGTATATATTTATT-ATTTAAATGG
1 TTTATGTATATATTTATTGATTAAAATGG
*
77029727 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATGTATATATT-TATTGATTAAAAT
77029754 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTATGTATATATTTATTGATTAAAATGG
Found at i:77030130 original size:7 final size:7
Alignment explanation
Indices: 77030120--77030208 Score: 52
Period size: 7 Copynumber: 12.3 Consensus size: 7
77030110 AGTTGGTAAA
77030120 GGTTAAG
1 GGTTAAG
**
77030127 GGTTGTG
1 GGTTAAG
* *
77030134 GATTATG
1 GGTTAAG
77030141 GGTTTAAG
1 GG-TTAAG
77030149 GGTTAAG
1 GGTTAAG
* *
77030156 GGTCATG
1 GGTTAAG
*
77030163 GGTTATG
1 GGTTAAG
*
77030170 GGTTTAAT
1 GG-TTAAG
77030178 GGTTAAAG
1 GGTT-AAG
* *
77030186 GGATAGG
1 GGTTAAG
*
77030193 GGTTAGG
1 GGTTAAG
77030200 GGTTAAG
1 GGTTAAG
77030207 GG
1 GG
77030209 GTTTAATTAA
Statistics
Matches: 63, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
7 47 0.75
8 16 0.25
ACGTcount: A:0.22, C:0.01, G:0.44, T:0.33
Consensus pattern (7 bp):
GGTTAAG
Found at i:77030157 original size:29 final size:29
Alignment explanation
Indices: 77030120--77030183 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
77030110 AGTTGGTAAA
**
77030120 GGTTAAGGGTTGTGGATTATGGGTTTAAG
1 GGTTAAGGGTCATGGATTATGGGTTTAAG
* *
77030149 GGTTAAGGGTCATGGGTTATGGGTTTAAT
1 GGTTAAGGGTCATGGATTATGGGTTTAAG
77030178 GGTTAA
1 GGTTAA
77030184 AGGGATAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.22, C:0.02, G:0.39, T:0.38
Consensus pattern (29 bp):
GGTTAAGGGTCATGGATTATGGGTTTAAG
Found at i:77030309 original size:14 final size:15
Alignment explanation
Indices: 77030292--77030324 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
77030282 TTTGGTTTAT
77030292 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
77030306 GGTTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
77030321 GGTT
1 GGTT
77030325 ACTAGATTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:77030309 original size:21 final size:21
Alignment explanation
Indices: 77030285--77030324 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
77030275 TAGATATTTT
*
77030285 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGGTTTAAGGGTTGG
*
77030306 GGTTTAAGGTTTAGGGGTT
1 GGTTTAAGGTTTAAGGGTT
77030325 ACTAGATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGGGTTGG
Found at i:77030820 original size:26 final size:26
Alignment explanation
Indices: 77030791--77030898 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
77030781 TGGTACAAAT
77030791 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
77030817 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
77030843 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
77030869 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77030895 TGAT
1 TGAT
77030899 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:77033764 original size:26 final size:27
Alignment explanation
Indices: 77033698--77033765 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
77033688 TAAAATTTTA
77033698 AAGATTTCAAA-TTTAGAATAAATTTC
1 AAGATTTCAAATTTTAGAATAAATTTC
*
77033724 AAGATTTCAAATTTTA-AATAATTTTC
1 AAGATTTCAAATTTTAGAATAAATTTC
**
77033750 ATTATTTCAAATTTTA
1 AAGATTTCAAATTTTA
77033766 TCTAATTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 34 0.89
27 4 0.11
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (27 bp):
AAGATTTCAAATTTTAGAATAAATTTC
Found at i:77037454 original size:10 final size:10
Alignment explanation
Indices: 77037439--77037466 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
77037429 TTCAATCAAG
77037439 GTATGAATAA
1 GTATGAATAA
77037449 GTATGAATAA
1 GTATGAATAA
77037459 GTATGAAT
1 GTATGAAT
77037467 TAATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.32
Consensus pattern (10 bp):
GTATGAATAA
Found at i:77037936 original size:244 final size:244
Alignment explanation
Indices: 77037486--77038282 Score: 1497
Period size: 244 Copynumber: 3.3 Consensus size: 244
77037476 TACCATGTAC
77037486 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
*
77037551 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTT-CCTTATATCAAGCTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
*
77037615 GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAGA
131 GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
77037680 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
*
77037729 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTCTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
77037794 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
* *
77037859 GATCCTCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
131 GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
*
77037924 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTGATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
*
77037973 CTTTCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
*
77038038 AAGATTCAAAGTATATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAGCTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
*
77038103 GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAGAAAGACTTGAAAA
131 GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
77038168 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
*
77038217 CTTGCTTGTCCATTAAAATTACAACAATAGCCGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
77038282 A
66 A
77038283 TCTAATAATT
Statistics
Matches: 538, Mismatches: 15, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
243 101 0.19
244 437 0.81
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (244 bp):
CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
Found at i:77042361 original size:15 final size:13
Alignment explanation
Indices: 77042323--77042364 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
77042313 AACCGCTTGT
*
77042323 AAAAGAAAATGAG
1 AAAAGAAAAAGAG
77042336 AAAAGAAAAAGATG
1 AAAAGAAAAAGA-G
77042350 AAAAGCAAAAAGAG
1 AAAAG-AAAAAGAG
77042364 A
1 A
77042365 TCAAAAGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 8 0.31
15 7 0.27
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.05
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:77042495 original size:12 final size:12
Alignment explanation
Indices: 77042478--77042515 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
77042468 AAAACAAATT
77042478 GAGATTGAAAAA
1 GAGATTGAAAAA
*
77042490 GAGATTGACAAA
1 GAGATTGAAAAA
*
77042502 GAGAATGAAAAA
1 GAGATTGAAAAA
77042514 GA
1 GA
77042516 AAAAGAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.58, C:0.03, G:0.26, T:0.13
Consensus pattern (12 bp):
GAGATTGAAAAA
Found at i:77045526 original size:26 final size:26
Alignment explanation
Indices: 77045496--77045545 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
77045486 TCACATTGTA
77045496 TGCCCATTGGAGTTTC-TTCATTCATC
1 TGCCCATTGGAG-TTCATTCATTCATC
*
77045522 TGCCCATTGGTGTTCATTCATTCA
1 TGCCCATTGGAGTTCATTCATTCA
77045546 CATCATTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (26 bp):
TGCCCATTGGAGTTCATTCATTCATC
Found at i:77048723 original size:17 final size:18
Alignment explanation
Indices: 77048703--77048736 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77048693 AGATTAATGT
77048703 TAAAAAAATT-ATAATTA
1 TAAAAAAATTAATAATTA
77048720 TAAAAAAATTAATAATT
1 TAAAAAAATTAATAATT
77048737 GAGTTATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAAAAATTAATAATTA
Found at i:77052500 original size:87 final size:87
Alignment explanation
Indices: 77052395--77052574 Score: 335
Period size: 87 Copynumber: 2.1 Consensus size: 87
77052385 TAATAGAATA
77052395 ATAATAACCATGTAAGTGATAAAAATAATAATGGTAATAATATTTAAAATATATGTACATGAATA
1 ATAATAACCATGTAAGTGATAAAAATAATAATGGTAATAATATTTAAAATATATGTACATGAATA
*
77052460 AT-AGTAAAAGGTATGTATATAT
66 ATAAAT-AAAGGTATGTATATAT
77052482 ATAATAACCATGTAAGTGATAAAAATAATAATGGTAATAATATTTAAAATATATGTACATGAATA
1 ATAATAACCATGTAAGTGATAAAAATAATAATGGTAATAATATTTAAAATATATGTACATGAATA
77052547 ATAAATAAAGGTATGTATATAT
66 ATAAATAAAGGTATGTATATAT
77052569 ATAATA
1 ATAATA
77052575 GTAAAAATGG
Statistics
Matches: 91, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
87 89 0.98
88 2 0.02
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (87 bp):
ATAATAACCATGTAAGTGATAAAAATAATAATGGTAATAATATTTAAAATATATGTACATGAATA
ATAAATAAAGGTATGTATATAT
Found at i:77052600 original size:3 final size:3
Alignment explanation
Indices: 77052592--77052733 Score: 88
Period size: 3 Copynumber: 45.7 Consensus size: 3
77052582 TGGTAATTAG
* * * * *
77052592 AAT AAT AAT AGT AAT GAT GAT -AT CAAAT AAT AGT AAA AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AA-T AAT AAT AAT AAT AAT AAT
* * * * *
77052638 AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAT GAG GAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
77052686 AAC AAT AAT ATAT CAAGC AACA AAT AAT AAT GAT AAT AGT AAT AAT AA
1 AAT AAT AAT A-AT -AA-T AA-T AAT AAT AAT AAT AAT AAT AAT AAT AA
77052734 AGAAATGGGA
Statistics
Matches: 108, Mismatches: 25, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
2 2 0.02
3 94 0.87
4 10 0.09
5 2 0.02
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:77057426 original size:40 final size:35
Alignment explanation
Indices: 77057379--77057476 Score: 119
Period size: 34 Copynumber: 2.7 Consensus size: 35
77057369 GTAACAGTTT
77057379 GGGCCTTAGCCCATCTCAATACAGTATCAAATATGCAGTA
1 GGGCCTTAGCCCAT-TC-AT--AGTATC-AATATGCAGTA
*
77057419 GGGCCTTAGCCCA-TCATAGTATCAATATGCATTA
1 GGGCCTTAGCCCATTCATAGTATCAATATGCAGTA
*
77057453 GGGCCTTAGCCCATT-ACAGTATCA
1 GGGCCTTAGCCCATTCATAGTATCA
77057477 GTAGCAATCG
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
34 31 0.56
35 7 0.13
37 2 0.04
38 2 0.04
40 13 0.24
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (35 bp):
GGGCCTTAGCCCATTCATAGTATCAATATGCAGTA
Found at i:77057449 original size:34 final size:34
Alignment explanation
Indices: 77057399--77057476 Score: 120
Period size: 34 Copynumber: 2.3 Consensus size: 34
77057389 CCATCTCAAT
77057399 ACAGTATCAAATATGCAGTAGGGCCTTAGCCCATC
1 ACAGTATC-AATATGCAGTAGGGCCTTAGCCCATC
* * *
77057434 ATAGTATCAATATGCATTAGGGCCTTAGCCCATT
1 ACAGTATCAATATGCAGTAGGGCCTTAGCCCATC
77057468 ACAGTATCA
1 ACAGTATCA
77057477 GTAGCAATCG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
34 32 0.82
35 7 0.18
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (34 bp):
ACAGTATCAATATGCAGTAGGGCCTTAGCCCATC
Found at i:77066115 original size:20 final size:21
Alignment explanation
Indices: 77066072--77066117 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
77066062 ATTGTTTGGT
77066072 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
77066092 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
77066111 TATGGGC
1 TATGGGC
77066118 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:77068145 original size:24 final size:24
Alignment explanation
Indices: 77068118--77068280 Score: 290
Period size: 24 Copynumber: 6.8 Consensus size: 24
77068108 CTTATTATGT
**
77068118 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
77068142 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
77068166 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
77068190 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
77068214 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
77068238 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
77068262 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
77068281 TATTTCCAGC
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 133 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:77075337 original size:24 final size:24
Alignment explanation
Indices: 77075310--77075448 Score: 242
Period size: 24 Copynumber: 5.8 Consensus size: 24
77075300 CTTATTATGT
**
77075310 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
77075334 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
77075358 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
**
77075382 TCGCACACATAGTGCCATAGTGGA
1 TCGCACACATAGTGCCATAGTAAA
77075406 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
77075430 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
77075449 TATTTCCAGC
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 109 1.00
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:77075340 original size:48 final size:46
Alignment explanation
Indices: 77075288--77075449 Score: 207
Period size: 48 Copynumber: 3.4 Consensus size: 46
77075278 ACCGAATGTG
* **
77075288 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGCGAATC
1 GCACACATAGTGC-TA-TATGATCGCACACATAGTGCCATAGTAAATC
* *
77075336 GCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATA-T-GATCGCACACATAGTGCCATAGTAAATC
*
77075384 GCACACATAGTGCCATAGTGGATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATA-T-GATCGCACACATAGTGCCATAGTAAATC
*
77075432 GCACACATAGTGCCATAT
1 GCACACATAGTGCTATAT
77075450 ATTTCCAGCA
Statistics
Matches: 105, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
46 2 0.02
47 3 0.03
48 100 0.95
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (46 bp):
GCACACATAGTGCTATATGATCGCACACATAGTGCCATAGTAAATC
Found at i:77080716 original size:40 final size:40
Alignment explanation
Indices: 77080671--77080838 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
77080661 CGGAATATAA
77080671 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
77080711 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
77080751 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77080791 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77080830 CCGGATATA
1 CCGGATATA
77080839 TTCAATTTCT
Statistics
Matches: 108, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 15 0.14
40 93 0.86
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77089722 original size:13 final size:14
Alignment explanation
Indices: 77089704--77089734 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
77089694 GTCAATATTT
77089704 TATAATTACTT-AA
1 TATAATTACTTAAA
77089717 TATAATTACTTAAA
1 TATAATTACTTAAA
77089731 TATA
1 TATA
77089735 GCAACCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (14 bp):
TATAATTACTTAAA
Found at i:77090507 original size:5 final size:5
Alignment explanation
Indices: 77090499--77090530 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
77090489 TAATTAAATT
77090499 ATTTA ATTTA ATTTA ATTTA ATTT- ATTTA ATT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATT
77090531 ATATTGTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
ATTTA
Found at i:77093630 original size:10 final size:10
Alignment explanation
Indices: 77093603--77093640 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
77093593 TTAAATTCTA
*
77093603 AAAGATAAAT
1 AAAGATAATT
77093613 ACAA-ATAATT
1 A-AAGATAATT
77093623 AAAGATAATT
1 AAAGATAATT
77093633 AAAGATAA
1 AAAGATAA
77093641 ATGAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:77099840 original size:17 final size:17
Alignment explanation
Indices: 77099814--77099847 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
77099804 CGGAAGAGAT
*
77099814 GATGAGATCTCAATATC
1 GATGAAATCTCAATATC
77099831 GATGAAATCTCAATATC
1 GATGAAATCTCAATATC
77099848 CTTAGCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (17 bp):
GATGAAATCTCAATATC
Found at i:77105896 original size:40 final size:40
Alignment explanation
Indices: 77105810--77105987 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
77105800 AAGCCAAGTA
* * * *
77105810 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
77105848 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
77105888 CCTTCGGGACTTAGCCCGGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77105928 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
77105969 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77105988 TTATCATCCA
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
38 13 0.11
39 16 0.13
40 67 0.54
41 24 0.20
42 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77113934 original size:40 final size:40
Alignment explanation
Indices: 77113841--77114018 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
77113831 AGGCCAAGTA
* * *
77113841 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77113879 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77113919 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77113959 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
77114000 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77114019 TTATCATCCA
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
38 12 0.10
39 17 0.14
40 66 0.54
41 24 0.20
42 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77117171 original size:40 final size:40
Alignment explanation
Indices: 77117126--77117292 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
77117116 CGGAATATAA
77117126 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
77117166 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
77117206 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
77117246 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
77117285 CCGGATAT
1 CCGGATAT
77117293 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77125166 original size:40 final size:40
Alignment explanation
Indices: 77125121--77125288 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
77125111 CGGAATATAA
77125121 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
77125161 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
77125201 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
77125241 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
77125281 CCGGATAT
1 CCGGATAT
77125289 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77125271 original size:80 final size:80
Alignment explanation
Indices: 77125137--77125286 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
77125127 ATAACCACGT
* *
77125137 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
77125202 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
77125217 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
77125280 CCCGGAT
64 CCCGGAT
77125287 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:77129592 original size:34 final size:34
Alignment explanation
Indices: 77129554--77129653 Score: 89
Period size: 34 Copynumber: 3.3 Consensus size: 34
77129544 TGACACATAT
77129554 AACAAAATACTAAAAAATACTATACATGCCATTG
1 AACAAAATACTAAAAAATACTATACATGCCATTG
77129588 AAC-AAA-A-T-AAAAATGAC---ACAT---A-T-
1 AACAAAATACTAAAAAAT-ACTATACATGCCATTG
*
77129611 AACAAAATACTAAAAAATATTATACATGCCATTG
1 AACAAAATACTAAAAAATACTATACATGCCATTG
*
77129645 AAAAAAATA
1 AACAAAATA
77129654 AACTAAGTCT
Statistics
Matches: 51, Mismatches: 2, Indels: 26
0.65 0.03 0.33
Matches are distributed among these distances:
23 3 0.06
24 4 0.08
25 2 0.04
26 2 0.04
27 6 0.12
28 4 0.08
29 4 0.08
30 6 0.12
31 3 0.06
32 2 0.04
33 4 0.08
34 11 0.22
ACGTcount: A:0.59, C:0.14, G:0.05, T:0.22
Consensus pattern (34 bp):
AACAAAATACTAAAAAATACTATACATGCCATTG
Found at i:77129604 original size:57 final size:57
Alignment explanation
Indices: 77129541--77129655 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
77129531 TTGGAAAATC
*
77129541 AAATGACACATATAACAAAATACTAAAAAATACTATACATGCCATTGAACAAAATAA
1 AAATGACACATATAACAAAATACTAAAAAATACTATACATGCCATTGAAAAAAATAA
*
77129598 AAATGACACATATAACAAAATACTAAAAAATATTATACATGCCATTGAAAAAAATAA
1 AAATGACACATATAACAAAATACTAAAAAATACTATACATGCCATTGAAAAAAATAA
77129655 A
1 A
77129656 CTAAGTCTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.59, C:0.14, G:0.05, T:0.22
Consensus pattern (57 bp):
AAATGACACATATAACAAAATACTAAAAAATACTATACATGCCATTGAAAAAAATAA
Found at i:77131864 original size:38 final size:38
Alignment explanation
Indices: 77131822--77131896 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
77131812 CTATCATGCA
77131822 AGGATAAAAAATATAAAATGACTAAATATAAATTTATG
1 AGGATAAAAAATATAAAATGACTAAATATAAATTTATG
**
77131860 AGGATAACGAATATAAAATGACTAAATATAAATTTAT
1 AGGATAAAAAATATAAAATGACTAAATATAAATTTAT
77131897 TCCCTACTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.56, C:0.04, G:0.11, T:0.29
Consensus pattern (38 bp):
AGGATAAAAAATATAAAATGACTAAATATAAATTTATG
Found at i:77142182 original size:67 final size:67
Alignment explanation
Indices: 77142074--77142209 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
77142064 TAACTATTAA
*
77142074 AAATTTAACATAACTATATATTTTTCACATCTAAAAGAAAGTGTTGTTAAAGAATTATAAAAGCA
1 AAATTTAACATAACTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
77142139 AC
66 AC
*
77142141 AAATTTAACATATCTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
1 AAATTTAACATAACTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
77142206 AC
66 AC
77142208 AA
1 AA
77142210 GGTCAAGGTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (67 bp):
AAATTTAACATAACTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
AC
Found at i:77143419 original size:24 final size:26
Alignment explanation
Indices: 77143385--77143449 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 26
77143375 TTTATAATTC
77143385 TTTTATGATTTTTATTTCTAT-A-G-T
1 TTTTAT-ATTTTTATTTCTATAATGAT
*
77143409 TTTCTATATTTTTATTTTTATAATGAT
1 TTT-TATATTTTTATTTCTATAATGAT
77143436 TTTTATATTTTTAT
1 TTTTATATTTTTAT
77143450 AATGTTTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 16 0.44
25 4 0.11
26 12 0.33
27 4 0.11
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (26 bp):
TTTTATATTTTTATTTCTATAATGAT
Found at i:77143437 original size:18 final size:20
Alignment explanation
Indices: 77143417--77143453 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
77143407 GTTTTCTATA
77143417 TTTT-TATTTTTATAATGAT
1 TTTTATATTTTTATAATGAT
77143436 TTTTATATTTTTATAATG
1 TTTTATATTTTTATAATG
77143454 TTTATACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTATATTTTTATAATGAT
Found at i:77144519 original size:3 final size:3
Alignment explanation
Indices: 77144511--77144554 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
77144501 GCCCCCATCT
77144511 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
77144555 TCTGCAACTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:77148776 original size:48 final size:46
Alignment explanation
Indices: 77148614--77148780 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
77148604 TGAAATGTGT
* * *
77148614 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TTTTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGATAT-AGA
* * * **
77148660 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCAGATATAGA
* *
77148706 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-AGATATA-GA
*
77148754 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
77148781 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 71 0.70
47 2 0.02
48 27 0.27
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAGATATAGA
Found at i:77148868 original size:49 final size:49
Alignment explanation
Indices: 77148803--77148925 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
77148793 TGTGTGTCAA
* *
77148803 TGTAAGACCTATTTGGGACATGGCATCAACAC-CGATAGATGAGAG-CTAG
1 TGTAAGACCTGTTTGGGACATGGCATCAAC-CTCGATAGATGAAAGTCT-G
* * * * *
77148852 TGTAGGACCTGTTTGGGACACGTCATCAGCCTCGATATATGAAAGTCTG
1 TGTAAGACCTGTTTGGGACATGGCATCAACCTCGATAGATGAAAGTCTG
*
77148901 TGTAAGACCTGTCTGGGACATGGCA
1 TGTAAGACCTGTTTGGGACATGGCA
77148926 CCGACTTTGA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
48 1 0.02
49 58 0.95
50 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
TGTAAGACCTGTTTGGGACATGGCATCAACCTCGATAGATGAAAGTCTG
Found at i:77151107 original size:8 final size:8
Alignment explanation
Indices: 77151089--77151121 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
77151079 ATTTATCCTC
77151089 TTCTCTTTT
1 TTCT-TTTT
77151098 TTCTTTTT
1 TTCTTTTT
77151106 TTCTTTTT
1 TTCTTTTT
77151114 TTCTTTTT
1 TTCTTTTT
77151122 GCAAATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.83
9 4 0.17
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TTCTTTTT
Found at i:77155995 original size:69 final size:69
Alignment explanation
Indices: 77155884--77156020 Score: 229
Period size: 69 Copynumber: 2.0 Consensus size: 69
77155874 CAAGACTCTA
* * *
77155884 TCAGCCCTAACACCACTACAAAACCTGCTGAAAATCCTACAGCTATTGTTATTCCTGTTTTGGAA
1 TCAGCCCTAACACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
77155949 CCTG
66 CCTG
* *
77155953 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATTCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTAACACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
77156018 CCT
66 CCT
77156021 ATTTTTCCTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.28
Consensus pattern (69 bp):
TCAGCCCTAACACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:77159955 original size:34 final size:34
Alignment explanation
Indices: 77159917--77159984 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
77159907 ATATCCATGT
77159917 ATATGAACATGCATACAAATGTATATATGTAAAA
1 ATATGAACATGCATACAAATGTATATATGTAAAA
77159951 ATATGAACATGCATACAAATGTATATATGTAAAA
1 ATATGAACATGCATACAAATGTATATATGTAAAA
77159985 TGTTAAGTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (34 bp):
ATATGAACATGCATACAAATGTATATATGTAAAA
Found at i:77173336 original size:37 final size:37
Alignment explanation
Indices: 77173278--77173422 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
77173268 GCTCAGACGA
* *
77173278 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
77173315 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
77173352 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
77173389 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
77173423 ATATATTTCC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:77173538 original size:48 final size:48
Alignment explanation
Indices: 77173467--77174378 Score: 1482
Period size: 48 Copynumber: 19.0 Consensus size: 48
77173457 TGTTACAACA
* *
77173467 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
77173515 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
77173563 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
77173611 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
77173659 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
77173707 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
77173755 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
77173803 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
**
77173851 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATGCATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
77173899 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
77173947 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
77173995 TTCACATTTGCCATTCGGCTTTACCACATATACATGTCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
77174043 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
77174091 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
77174139 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
77174187 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
77174235 TTCACATTAGCCATTCGGCTTTACCACATATACCTATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
77174283 TTCACATTTGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
77174331 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
77174379 ATATATATAT
Statistics
Matches: 800, Mismatches: 64, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 800 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:77175131 original size:14 final size:14
Alignment explanation
Indices: 77175112--77175139 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77175102 ATCATATCTT
77175112 ATTAAATCAACTCA
1 ATTAAATCAACTCA
77175126 ATTAAATCAACTCA
1 ATTAAATCAACTCA
77175140 TTATGTCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (14 bp):
ATTAAATCAACTCA
Found at i:77193876 original size:51 final size:49
Alignment explanation
Indices: 77193821--77193957 Score: 116
Period size: 50 Copynumber: 2.7 Consensus size: 49
77193811 GGTTAAATGT
* * *
77193821 AAACTAAATGAACAAATGAGTTACTTAATGCATGACTTAATTTAATGATGA
1 AAACTAAAT-AACAAAGGAGTTACATAATGCATGACATAATTT-ATGATGA
* ** * *
77193872 AAACTTAACTAACATGGGAGTTACATAATGCATGCCATAATTTATGATGC
1 AAAC-TAAATAACAAAGGAGTTACATAATGCATGACATAATTTATGATGA
* *
77193922 AAACTTAACTTACATGAA--AGTTACATAATGCATGAC
1 AAAC-TAAATAACA--AAGGAGTTACATAATGCATGAC
77193958 TTTATTAAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
50 36 0.51
51 31 0.44
52 4 0.06
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (49 bp):
AAACTAAATAACAAAGGAGTTACATAATGCATGACATAATTTATGATGA
Found at i:77193944 original size:50 final size:51
Alignment explanation
Indices: 77193839--77193957 Score: 168
Period size: 50 Copynumber: 2.4 Consensus size: 51
77193829 TGAACAAATG
* * **
77193839 AGTTACTTAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGGG
1 AGTTACATAATGCATGACATAATTTAATGATGAAAACTTAACTAACATGAA
* * *
77193890 AGTTACATAATGCATGCCATAATTT-ATGATGCAAACTTAACTTACATGAA
1 AGTTACATAATGCATGACATAATTTAATGATGAAAACTTAACTAACATGAA
77193940 AGTTACATAATGCATGAC
1 AGTTACATAATGCATGAC
77193958 TTTATTAAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 38 0.63
51 22 0.37
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (51 bp):
AGTTACATAATGCATGACATAATTTAATGATGAAAACTTAACTAACATGAA
Found at i:77195948 original size:27 final size:27
Alignment explanation
Indices: 77195891--77195955 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 27
77195881 TGAAGTATTC
77195891 AAAAAAAAAAGAAATACGAAATTTAAA
1 AAAAAAAAAAGAAATACGAAATTTAAA
* *
77195918 AAAAAAGAAGAGAAATACGAAATTTATA
1 AAAAAA-AAAAGAAATACGAAATTTAAA
*
77195946 AAAAATAAAA
1 AAAAAAAAAA
77195956 TAAAAAATGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 9 0.27
28 24 0.73
ACGTcount: A:0.72, C:0.03, G:0.09, T:0.15
Consensus pattern (27 bp):
AAAAAAAAAAGAAATACGAAATTTAAA
Found at i:77196873 original size:18 final size:19
Alignment explanation
Indices: 77196850--77196896 Score: 71
Period size: 17 Copynumber: 2.5 Consensus size: 19
77196840 CCATTCAAGA
77196850 GAAAAAAGAAAAG-AAAAT
1 GAAAAAAGAAAAGAAAAAT
77196868 G-AAAAAGAAAAGAAAAAT
1 GAAAAAAGAAAAGAAAAAT
77196886 GAGAAAAAGAA
1 GA-AAAAAGAA
77196897 TGCAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.42
18 7 0.27
20 8 0.31
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (19 bp):
GAAAAAAGAAAAGAAAAAT
Found at i:77196893 original size:20 final size:19
Alignment explanation
Indices: 77196852--77196917 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
77196842 ATTCAAGAGA
77196852 AAAAAGAAAAG-AAAAT-G
1 AAAAAGAAAAGAAAAATAG
77196869 AAAAAGAAAAGAAAAATGAG
1 AAAAAGAAAAGAAAAAT-AG
*
77196889 AAAAAG-AATGCAAAAATAG
1 AAAAAGAAAAG-AAAAATAG
*
77196908 CAAAAGAAAA
1 AAAAAGAAAA
77196918 AAAGAACAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 11 0.27
18 5 0.12
19 10 0.24
20 15 0.37
ACGTcount: A:0.74, C:0.03, G:0.17, T:0.06
Consensus pattern (19 bp):
AAAAAGAAAAGAAAAATAG
Found at i:77196956 original size:21 final size:22
Alignment explanation
Indices: 77196909--77196960 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
77196899 CAAAAATAGC
77196909 AAAAGAAAAAAAGAACAAGTGAG
1 AAAAGAAAAAAAGAACAAG-GAG
*
77196932 AAAAGAAAAAGAAGAGCAA-GA-
1 AAAAGAAAAA-AAGAACAAGGAG
77196953 AAAAGAAA
1 AAAAGAAA
77196961 TTAGAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 8 0.30
22 2 0.07
23 10 0.37
24 7 0.26
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAAAAGAACAAGGAG
Found at i:77199965 original size:20 final size:20
Alignment explanation
Indices: 77199942--77199987 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
77199932 TCAGCTCCAA
77199942 TCAGCTCACTTGAGCTCGTT
1 TCAGCTCACTTGAGCTCGTT
** *
77199962 TCAGCTCGTTTTAGCTCGTT
1 TCAGCTCACTTGAGCTCGTT
*
77199982 TTAGCT
1 TCAGCT
77199988 TCTTTCCAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.13, C:0.26, G:0.20, T:0.41
Consensus pattern (20 bp):
TCAGCTCACTTGAGCTCGTT
Found at i:77199967 original size:10 final size:10
Alignment explanation
Indices: 77199954--77199987 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
77199944 AGCTCACTTG
*
77199954 AGCTCGTTTC
1 AGCTCGTTTT
77199964 AGCTCGTTTT
1 AGCTCGTTTT
77199974 AGCTCGTTTT
1 AGCTCGTTTT
77199984 AGCT
1 AGCT
77199988 TCTTTCCAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.44
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:77202072 original size:39 final size:40
Alignment explanation
Indices: 77202018--77202272 Score: 351
Period size: 39 Copynumber: 6.5 Consensus size: 40
77202008 AAACCAAGTA
* * * *
77202018 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
77202057 CCTTCGGGACTTAGCCCGGTTATA-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77202096 CCTTCGGGACTTAG-CCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77202135 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77202175 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77202215 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
77202254 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77202273 TTATCATCCG
Statistics
Matches: 199, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
38 11 0.06
39 99 0.50
40 89 0.45
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77202165 original size:40 final size:40
Alignment explanation
Indices: 77202051--77202276 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
77202041 GCTACTTGCT
77202051 CAAATGCCTTCGGGACTTAGCCCGGTTATA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77202090 CAAATGCCTTCGGGACTTAG-CCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
77202129 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
77202169 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
77202209 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
77202248 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
77202277 CATCCGAATA
Statistics
Matches: 174, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 10 0.06
39 81 0.47
40 82 0.47
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77202227 original size:79 final size:79
Alignment explanation
Indices: 77202018--77202269 Score: 359
Period size: 79 Copynumber: 3.2 Consensus size: 79
77202008 AAACCAAGTA
* * * *
77202018 CCTTCGGAATTTAGCCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA-
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
77202081 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
77202096 CCTTCGGGACTTAGCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
77202161 AACTCGCACAAATG
66 AACTCGCACAAATG
*
77202175 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG-AATTA
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
* *
77202238 GTCACTAGCACAAATG
64 GTAACTCGCACAAATG
*
77202254 CCTTTGGGACTTAGCC
1 CCTTCGGGACTTAGCC
77202270 CGGTTATCAT
Statistics
Matches: 158, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
77 1 0.01
78 58 0.37
79 68 0.43
80 31 0.20
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:77206542 original size:46 final size:46
Alignment explanation
Indices: 77206490--77206700 Score: 191
Period size: 46 Copynumber: 4.5 Consensus size: 46
77206480 ATCGTTGGCT
* *
77206490 AGTGTAAGAGATGTCCGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
*
77206536 AGTGTAAGACCATGTCTGGGACATGACATCGG---CATTGA-GACGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACATT-ATGA-G--AGCC
* **
77206584 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT-A-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCC
* * * * *
77206630 AGTGTAAGACATGTCTAGGACATGCATCGGCTACATGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
*
77206676 AGTGTAAGACCATGTCTGAGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
77206701 GCATTGACTT
Statistics
Matches: 136, Mismatches: 14, Indels: 29
0.76 0.08 0.16
Matches are distributed among these distances:
44 2 0.01
45 8 0.06
46 63 0.46
47 41 0.30
48 18 0.13
49 1 0.01
50 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
Found at i:77206726 original size:47 final size:46
Alignment explanation
Indices: 77206532--77206739 Score: 178
Period size: 46 Copynumber: 4.5 Consensus size: 46
77206522 ACATTATGAG
* *
77206532 AGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACGA-A
1 AGCCAGTGTAAGACCATGTCTGAGACATG-CATCGGC-TCGAGAC-ATA
* *
77206580 AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACATA
1 AGCCAGTGTAAGACCATGTCTGAGACATGCATCGG-CTCGAGACATA
*
77206626 AGCCAGTGTAAGA-CATGTCT-AGGACATGCATCGGCTAC-ATGATGAT-
1 AGCCAGTGTAAGACCATGTCTGA-GACATGCATCGGCT-CGA-GA-CATA
* * * * *
77206672 AGTCAGTGTAAGACCATGTCTGAGACATGGCATTGACTTGTGATC-TA
1 AGCCAGTGTAAGACCATGTCTGAGACAT-GCATCGGCTCGAGA-CATA
*
77206719 AGCCAGTGTAAAACCATGTCT
1 AGCCAGTGTAAGACCATGTCT
77206740 AGGACGTGGC
Statistics
Matches: 136, Mismatches: 13, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
45 4 0.03
46 60 0.44
47 52 0.38
48 20 0.15
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGAGACATGCATCGGCTCGAGACATA
Found at i:77208597 original size:11 final size:11
Alignment explanation
Indices: 77208565--77208598 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
77208555 TCTTTTATTA
77208565 TTTTTCAAT-T
1 TTTTTCAATGT
77208575 TTTTTCACATGT
1 TTTTTCA-ATGT
77208587 TTTTTCAATGT
1 TTTTTCAATGT
77208598 T
1 T
77208599 ATTACAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.32
11 7 0.32
12 8 0.36
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (11 bp):
TTTTTCAATGT
Found at i:77212106 original size:46 final size:46
Alignment explanation
Indices: 77212053--77212228 Score: 157
Period size: 46 Copynumber: 3.8 Consensus size: 46
77212043 TATTTGGGCA
* *
77212053 TCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
* * * * *
77212099 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA--A--CG
*
77212146 TCCGAGCTCGCTT-AGTTGAGT-TCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCG-TTGAGTTGAGTCT-GAGTTCACTTATGGATGCAAACG
* *
77212192 -CCCAAGCTCGTTGAGTTGAGTCTGATTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCTGAGTTCACTTATGG
77212229 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
43 5 0.05
45 8 0.08
46 53 0.52
47 25 0.25
48 5 0.05
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
Found at i:77216223 original size:46 final size:46
Alignment explanation
Indices: 77216171--77216344 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 46
77216161 TTTGGGCATC
*
77216171 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGAT
* * * *
77216217 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAAGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACG-AT
* * * * **
77216263 CCAAGCTCGTTGAGTTGATTCTGAGTTCACTTATGGATGCGAACGCC
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGAT
* * *
77216310 CGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77216345 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.58
47 23 0.23
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGAT
Done.