Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 259 of 328
Found at i:77216325 original size:93 final size:93
Alignment explanation
Indices: 77216166--77216337 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
77216156 AGATATTTGG
** *
77216166 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
77216231 TGAGTCCGAGTTCGTGAGATGTAACTAA
66 TGAGTCCGAGTTCGTGAGATGTAACTAA
* * * *
77216259 GCATCC-AAGCTCGTTGAGTTGATTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
77216323 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
77216338 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAA
Found at i:77218006 original size:50 final size:51
Alignment explanation
Indices: 77217906--77218023 Score: 193
Period size: 50 Copynumber: 2.3 Consensus size: 51
77217896 ATGAACAAAT
* *
77217906 GAGTTACTTAATGCATGGCTTAATTTAATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGGCATAATTTAATGATGCAAACTTAACTAACATGA
* *
77217957 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAACTTACATGA
1 GAGTTACATAATGCATGGCATAATTTAATGATGCAAACTTAACTAACATGA
77218007 GAGTTACATAATGCATG
1 GAGTTACATAATGCATG
77218024 ACTTTATTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 40 0.63
51 23 0.37
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (51 bp):
GAGTTACATAATGCATGGCATAATTTAATGATGCAAACTTAACTAACATGA
Found at i:77218103 original size:39 final size:39
Alignment explanation
Indices: 77218044--77218129 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
77218034 ATGCAAAACG
* * * *
77218044 CATATTAATGTTGTTCAAACTATGATATAATTAAAGACT
1 CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
77218083 CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
1 CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
*
77218122 CAAACTAA
1 CATACTAA
77218130 ACTAACTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.31
Consensus pattern (39 bp):
CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
Found at i:77222572 original size:46 final size:46
Alignment explanation
Indices: 77222522--77222694 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
77222512 TGGTTGAGCA
77222522 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
77222568 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * *
77222613 CATCAGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
77222661 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77222695 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:77222678 original size:93 final size:93
Alignment explanation
Indices: 77222519--77222689 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
77222509 GGATGGTTGA
* **
77222519 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATACCCGAACTCGTTGAGT
77222584 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
77222612 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATACCCGAGCTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATACCCGAACTCGTTGAGT
77222677 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77222690 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77222955 original size:19 final size:20
Alignment explanation
Indices: 77222918--77222955 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
77222908 ATAAGGTGGT
77222918 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
77222938 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
77222956 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:77226516 original size:79 final size:82
Alignment explanation
Indices: 77226376--77226560 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
77226366 TCGAATGATG
* * *
77226376 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
77226440 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
77226456 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
77226518 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
77226536 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77226561 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:77226568 original size:40 final size:40
Alignment explanation
Indices: 77226377--77226568 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
77226367 CGAATGATGT
* * * * *
77226377 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
77226417 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
77226457 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
77226496 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
77226536 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
77226569 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:77226591 original size:79 final size:79
Alignment explanation
Indices: 77226376--77226593 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
77226366 TCGAATGATG
* * * * ** *
77226376 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
77226439 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
77226456 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
77226521 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
77226536 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
77226594 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:77234571 original size:40 final size:39
Alignment explanation
Indices: 77234452--77234590 Score: 149
Period size: 39 Copynumber: 3.5 Consensus size: 39
77234442 GGACTAGGAT
* *
77234452 CCGAAGGCATTCGTGCGAGAT-AATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAG-TCACTAAA-CCGGGCTTAGTC
* * *
77234491 CCGAAGGCATTTGTGCAAGTTACTAAACCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTT-AGTC
*
77234530 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCGGGCTTAGTC
* *
77234570 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
77234591 GTTATATCCG
Statistics
Matches: 85, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
37 1 0.01
38 8 0.09
39 45 0.53
40 29 0.34
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTTAGTC
Found at i:77234614 original size:79 final size:78
Alignment explanation
Indices: 77234399--77234615 Score: 174
Period size: 79 Copynumber: 2.7 Consensus size: 78
77234389 TCGAATGATG
* * * ** *
77234399 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTA-AACCGGGTTA-AATTCCGAAGGCAT
77234462 TCGTGCGAGATAATAAA
62 TCGTGCGAGATAATAAA
* * * *
77234479 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCGGGTTAAGTCCCGAAGGCATTCGT
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCGGGTTAAATTCCGAAGGCATTCGT
*
77234544 GCGAG-TCACTATAA
66 GCGAGAT-AATA-AA
** * ** *
77234558 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTA-AACCGGGTTAAATTCCGAAGG
77234616 TACGTGATTC
Statistics
Matches: 113, Mismatches: 18, Indels: 13
0.78 0.12 0.09
Matches are distributed among these distances:
77 1 0.01
78 37 0.33
79 54 0.48
80 21 0.19
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCGGGTTAAATTCCGAAGGCATTCGT
GCGAGATAATAAA
Found at i:77242533 original size:29 final size:28
Alignment explanation
Indices: 77242500--77242562 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
77242490 ACAACAAATA
* * * *
77242500 ATAAAACAATTTTTAAAATATATATGTAT
1 ATAAAACAATATGTAAAACA-AAATGTAT
77242529 ATAAAA-AATATGTAAAACAAAATGTAT
1 ATAAAACAATATGTAAAACAAAATGTAT
77242556 ATAAAAC
1 ATAAAAC
77242563 CATTCAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 13 0.45
28 10 0.34
29 6 0.21
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (28 bp):
ATAAAACAATATGTAAAACAAAATGTAT
Found at i:77242541 original size:15 final size:15
Alignment explanation
Indices: 77242521--77242561 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
77242511 TTTAAAATAT
77242521 ATATGTATATAAAAA
1 ATATGTATATAAAAA
*
77242536 ATATGTA-A-AACAA
1 ATATGTATATAAAAA
77242549 A-ATGTATATAAAA
1 ATATGTATATAAAA
77242562 CCATTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 5 0.23
13 6 0.27
14 4 0.18
15 7 0.32
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (15 bp):
ATATGTATATAAAAA
Found at i:77242627 original size:19 final size:19
Alignment explanation
Indices: 77242600--77242646 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
77242590 TTAATACAAA
* * *
77242600 GTTTAAAATAACTAAAATG
1 GTTTTAAATAAATAAAAAG
77242619 GTTTTAAATAAATAAAAAG
1 GTTTTAAATAAATAAAAAG
77242638 G-TTTAAATA
1 GTTTTAAATA
77242647 TATACGAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.34
Consensus pattern (19 bp):
GTTTTAAATAAATAAAAAG
Found at i:77244242 original size:45 final size:44
Alignment explanation
Indices: 77244193--77244373 Score: 106
Period size: 45 Copynumber: 4.1 Consensus size: 44
77244183 TCGATTTGCC
77244193 CCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACT
1 CCACTGCAACTTCAGGGAGACAAGATCTAC-ATATTCAGCCTACT
* * * * * * *
77244238 CCACTACATCTTTAGGGAG-CTAGGA-CTTGCTTAATTCTG-CT--T
1 CCACTGCAACTTCAGGGAGAC-AAGATC-TACAT-ATTCAGCCTACT
* * * * * ** * *
77244280 -CACTGCAACTTCAGGAAGCCAAGATTCTTCGTCTTC-GATTTGCC
1 CCACTGCAACTTCAGGGAGACAAGA-TCTACATATTCAG-CCTACT
77244324 CCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACT
1 CCACTGCAACTTCAGGGAGACAAGATCTAC-ATATTCAGCCTACT
77244369 CCACT
1 CCACT
77244374 ACATCTTTAG
Statistics
Matches: 97, Mismatches: 26, Indels: 26
0.65 0.17 0.17
Matches are distributed among these distances:
40 1 0.01
41 20 0.21
42 6 0.06
43 1 0.01
44 9 0.09
45 59 0.61
46 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGACAAGATCTACATATTCAGCCTACT
Found at i:77244355 original size:131 final size:131
Alignment explanation
Indices: 77243946--77244747 Score: 1279
Period size: 131 Copynumber: 6.1 Consensus size: 131
77243936 GCGGCTTCGA
* * * * *
77243946 GGAGATAAGACCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGTTAGGA-TGGTGGCTT
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACT--T-GCTT
77244010 AAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACT
63 AAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACT
*
77244075 TTAG
128 TCAG
* **
77244079 GGAGACAAGATCTACAATATTTAGCCTACTCCACTACAAGTTTAGGGAGCTAGGACTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
* * * *
77244144 TCTTCTT--CTGCAACTTCAAGAAACCAAGATTCATCG-CTTTCGATTTGCCCCACTGCAACTTC
66 TCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTC-TTCGATTTGCCCCACTGCAACTTC
77244206 AG
130 AG
*
77244208 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAT
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
* *
77244273 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCTTCGTCTTCGATTTGCCCCACTGCAACTTCA
66 TCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
77244338 G
131 G
* *
77244339 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGAGAGCTAGGATTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
* * *
77244404 TCTACTTCATTGTAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTCGCCCCACTGCAACTTCA
66 TCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
*
77244469 A
131 G
*
77244470 GGAGACAAGATCTACAATATTCAGCCTATTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
* * * * *
77244535 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATCCATCGTCTTCGATTCGCCCCACTGCATCTTCA
66 TCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
77244600 G
131 G
77244601 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
*
77244666 TCTACTTCACTGCAACTTCTGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
66 TCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
77244731 G
131 G
77244732 GGAGACAAGATCTACA
1 GGAGACAAGATCTACA
77244748 TTCTGTTTCA
Statistics
Matches: 619, Mismatches: 45, Indels: 12
0.92 0.07 0.02
Matches are distributed among these distances:
128 1 0.00
129 118 0.19
131 448 0.72
132 2 0.00
133 49 0.08
134 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (131 bp):
GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
TCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
G
Found at i:77244870 original size:64 final size:64
Alignment explanation
Indices: 77244769--77244892 Score: 171
Period size: 64 Copynumber: 1.9 Consensus size: 64
77244759 AGGCCTATGC
* * * *
77244769 TTATGCCAAATAATTAAGATGCTATGATCAACATGAATCAATTGTTCCTAACTAGATGTGATGT
1 TTATGCCAAATAATTAAGATGCTATAATCAACATGAATCAAATGCTCCTAACTAAATGTGATGT
*
77244833 TTATGTCAAATAATT-AGAATGCTATAATCGAA-ATGAATCAAATGCTCCTAACTAAATGTG
1 TTATGCCAAATAATTAAG-ATGCTATAATC-AACATGAATCAAATGCTCCTAACTAAATGTG
77244893 TTATGAATGA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
63 2 0.04
64 49 0.92
65 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.33
Consensus pattern (64 bp):
TTATGCCAAATAATTAAGATGCTATAATCAACATGAATCAAATGCTCCTAACTAAATGTGATGT
Found at i:77249899 original size:587 final size:587
Alignment explanation
Indices: 77248787--77249963 Score: 2140
Period size: 587 Copynumber: 2.0 Consensus size: 587
77248777 CTCTACTAGC
*
77248787 TCCTTTTTGCTTGATCCAGGCCACGAATTACTATCCTCGTAATGTTGATTAGCTCCTTTAAAAAA
1 TCCTTTTTGCTTGATCCAGGCCACGAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAAAAA
* * *
77248852 GTCAGGACGCGACGGCTTTTGGATAATCTTTATCAGCTTGAATCCTTAGGTAAAGTTTGGTTTTC
66 GTCAGGACGCGACAGCTTTTAGATAATCTTTATCAACTTGAATCCTTAGGTAAAGTTTGGTTTTC
77248917 CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
131 CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
77248982 ATCCACGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
196 ATCCACGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
*
77249047 CAACACCTCCTTTCTATGATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
261 CAACACCTCATTTCTATGATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
* *
77249112 TAGTATAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAGGGGTTCGGAGTGGCTC
326 TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCGGAGTGGCTC
* *
77249177 TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAGGGTACCTAAGTC
391 TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAAGGTACCTAAGCC
* *
77249242 AGCAGATTCCTCGATCCTCACCCATTATAGGCTCATACGGATCGAGTTCAGTTCATGGGAATACA
456 AGCAGATTCCTCGATCCTCACCCATTATAGGCTCATACGGATCGAGTTCAATTCAGGGGAATACA
*
77249307 TTTCCCTATGACCATGCGGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGGAAGT
521 TTTCCCTATGACCATGCGGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGAAAGT
77249372 AA
586 AA
**
77249374 TCCTTTTTGCTTGATCCAGGCCACGAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAGGAA
1 TCCTTTTTGCTTGATCCAGGCCACGAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAAAAA
*
77249439 GTCGGGACGCGACAGCTTTTAGATAATCTTTATCAACTTGAATCCTTAGGTAAAGTTTGGTTTTC
66 GTCAGGACGCGACAGCTTTTAGATAATCTTTATCAACTTGAATCCTTAGGTAAAGTTTGGTTTTC
*
77249504 CTCTAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
131 CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
* * *
77249569 ATCCGCGTTATTAAGAAATTCGTTTTCTTATGACAAACTGTTCTATTTAGCAATCGAGTATGAAT
196 ATCCACGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
*
77249634 CAACACCTCATTTCTATGATGATGTAATGCAATGCATTCATGAACAAACAAAAAACAAAACACGT
261 CAACACCTCATTTCTATGATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
77249699 TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCGGAGTGGCTC
326 TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCGGAGTGGCTC
77249764 TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAAGGTACCTGAA-C
391 TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAAGGTACCT-AAGC
*
77249828 CAGCAGATTCCTCGATCCTCACCCTTTATAGGCTCATACGGATCGAGTTCAATTCAGGGGAATAC
455 CAGCAGATTCCTCGATCCTCACCCATTATAGGCTCATACGGATCGAGTTCAATTCAGGGGAATAC
*
77249893 ATTTCCCTATGACCATGCGGAGATGAAAATCTCACGAAATCATAGGTACGGATGTATCCCGAAAG
520 ATTTCCCTATGACCATGCGGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGAAAG
77249958 TAA
585 TAA
77249961 TCC
1 TCC
77249964 ACTAGCCCAT
Statistics
Matches: 567, Mismatches: 22, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
587 565 1.00
588 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (587 bp):
TCCTTTTTGCTTGATCCAGGCCACGAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAAAAA
GTCAGGACGCGACAGCTTTTAGATAATCTTTATCAACTTGAATCCTTAGGTAAAGTTTGGTTTTC
CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
ATCCACGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
CAACACCTCATTTCTATGATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCGGAGTGGCTC
TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAAGGTACCTAAGCC
AGCAGATTCCTCGATCCTCACCCATTATAGGCTCATACGGATCGAGTTCAATTCAGGGGAATACA
TTTCCCTATGACCATGCGGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGAAAGT
AA
Found at i:77251147 original size:132 final size:129
Alignment explanation
Indices: 77250714--77251179 Score: 393
Period size: 132 Copynumber: 3.5 Consensus size: 129
77250704 TATAAAATAC
* * * *
77250714 GAGTGAAATTTCGAAGAGATATTCGATTATTTTGACCAAACGGGAAATTGCTACCCAGCACGATA
1 GAGTGAAATTTCGAAGGGATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGATA
* * *
77250779 -GGTACT-ATTCCCCGAATTGCCAAACATCGAACACTTCTTTTGTTTTAAAG-GGCTTTTAGAAA
66 GGGCA-TGATT-CCCGAATTGCCAAACATCGAACA-TTC-TTTGTTTTAAAGAAGTTTTTA-AAA
*
77250841 ACGT
126 ACAT
* * * * * * *
77250845 GAATGAAATTTCGAAGGGATCTTCGATTGTTTAGACCAAATGAAAAAAAAAGCGCAACCCAGCAC
1 GAGTGAAATTTCGAAGGGATATTCGATTATTTTGACCAAACG----AGAAATCGCAACCCAGCAC
* * * * * * *
77250910 GATAGGGCACGATTCTCAAATCGCCAAACATCGAACATCCTTTGTTTTGAA-AAGTTTGTAATAA
62 GATAGGGCATGATTCCCGAATTGCCAAACATCGAACATTCTTTGTTTTAAAGAAGTTTTTAA-AA
77250974 ACAT
126 ACAT
** * * * * * *
77250978 GAGTGAAA-ACCTAAAGGAATATTCGATTGTTTTGAGCAAATGAGAAATCACAACCCAGCACGAT
1 GAGTGAAATTTC-GAAGGGATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGAT
* ** * * *
77251042 AGGGCATGATTCCCGAATTGTCAAACGCCGAATATTGCTTTCGTTTTAAAGAATTTTTTAAAAGG
65 AGGGCATGATTCCCGAATTGCCAAACATCGAACATT-CTTT-GTTTTAAAGAAGTTTTTAAAA-A
77251107 CAT
127 CAT
* * * * * *
77251110 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTCGAAGGGATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGATA
77251175 GGGCA
66 GGGCA
77251180 CTATTCCGCG
Statistics
Matches: 263, Mismatches: 58, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
129 46 0.17
130 4 0.02
131 45 0.17
132 70 0.27
133 52 0.20
134 2 0.01
135 38 0.14
136 6 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (129 bp):
GAGTGAAATTTCGAAGGGATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGATA
GGGCATGATTCCCGAATTGCCAAACATCGAACATTCTTTGTTTTAAAGAAGTTTTTAAAAACAT
Found at i:77251905 original size:2 final size:2
Alignment explanation
Indices: 77251900--77251928 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
77251890 TTTAAGGTAG
77251900 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77251929 AGTATAAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77252241 original size:15 final size:15
Alignment explanation
Indices: 77252221--77252261 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
77252211 TTTAAAATAT
77252221 ATATGTATATAAAAA
1 ATATGTATATAAAAA
*
77252236 ATATGTA-A-AACAA
1 ATATGTATATAAAAA
77252249 A-ATGTATATAAAA
1 ATATGTATATAAAA
77252262 CTATTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 5 0.23
13 6 0.27
14 4 0.18
15 7 0.32
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (15 bp):
ATATGTATATAAAAA
Found at i:77252341 original size:19 final size:19
Alignment explanation
Indices: 77252297--77252346 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
77252287 AGTTTAATAT
* *
77252297 AAAGTTTAAAATAACTAAA
1 AAAGTTTTAAATAAATAAA
**
77252316 ATGGTTTTAAATAAATAAA
1 AAAGTTTTAAATAAATAAA
77252335 AAAG-TTTAAATA
1 AAAGTTTTAAATA
77252347 TATACGAACA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (19 bp):
AAAGTTTTAAATAAATAAA
Found at i:77261420 original size:20 final size:20
Alignment explanation
Indices: 77261395--77261434 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77261385 ACAGCATTGA
*
77261395 ATAGCTAATCTTTAGGGATT
1 ATAGCTAATCTTTAGAGATT
* *
77261415 ATAGCTGATTTTTAGAGATT
1 ATAGCTAATCTTTAGAGATT
77261435 TTAATTACAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (20 bp):
ATAGCTAATCTTTAGAGATT
Found at i:77267554 original size:11 final size:11
Alignment explanation
Indices: 77267538--77267563 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
77267528 TTGATATTAA
77267538 TTAAAAGTTTT
1 TTAAAAGTTTT
77267549 TTAAAAGTTTT
1 TTAAAAGTTTT
77267560 TTAA
1 TTAA
77267564 CTTCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (11 bp):
TTAAAAGTTTT
Found at i:77273349 original size:42 final size:43
Alignment explanation
Indices: 77273266--77273367 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
77273256 TCTCGGACGT
* ** *
77273266 GGTCTTACATGTAATTCAATATCGATACCTTTGTCCCAGACAG
1 GGTCTTACATGTAAATCAATATCGATACCGATGTCCCAGACAC
*
77273309 GGTCTTACATG-AAATCAGATAT-GATGCCGATGTCCCAGACAC
1 GGTCTTACATGTAAATCA-ATATCGATACCGATGTCCCAGACAC
* *
77273351 GGCCTTATATGTAAATC
1 GGTCTTACATGTAAATC
77273368 TCAATCGAGG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 30 0.60
43 20 0.40
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATACCGATGTCCCAGACAC
Found at i:77290024 original size:31 final size:31
Alignment explanation
Indices: 77289983--77290044 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
77289973 TGTGATAAAA
* *
77289983 GAAGCAACTTTGAATGCATTTACAGAGAAAG
1 GAAGAAACTTTGAACGCATTTACAGAGAAAG
* *
77290014 GAAGAAACTTTGAACGCGTTTGCAGAGAAAG
1 GAAGAAACTTTGAACGCATTTACAGAGAAAG
77290045 TGTGAAGGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (31 bp):
GAAGAAACTTTGAACGCATTTACAGAGAAAG
Found at i:77290628 original size:33 final size:33
Alignment explanation
Indices: 77290549--77290662 Score: 110
Period size: 31 Copynumber: 3.5 Consensus size: 33
77290539 GATATATATT
* *
77290549 ATATTTAAATAATTTAATATAATAATAAATG--
1 ATATTCAAATAATTTAATATAATAATACATGAA
* * * *
77290580 GTTTTTAAATAATTTAATATAATGATACATGAA
1 ATATTCAAATAATTTAATATAATAATACATGAA
* * *
77290613 ATATTCAAATAATTTAGTATAACAATACATTAA
1 ATATTCAAATAATTTAATATAATAATACATGAA
77290646 ATA--CAAATTAATTTAAT
1 ATATTCAAA-TAATTTAAT
77290663 TTTTATATAT
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
31 31 0.46
32 8 0.12
33 29 0.43
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (33 bp):
ATATTCAAATAATTTAATATAATAATACATGAA
Found at i:77292306 original size:93 final size:93
Alignment explanation
Indices: 77292147--77292333 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
77292137 AAAGATTTAG
77292147 TATCGATATGGACTTTGATTCGTTGCTCTTGACATTGGGGTGTCTTAGTATCATATAAGTTATTT
1 TATCGATATGGACTTTGATTCGTTGCTCTTGACATTGGGGTGTCTTAGTATCATATAAGTTATTT
77292212 TGAAATAAAAGATTTCTATCAATGAATT
66 TGAAATAAAAGATTTCTATCAATGAATT
77292240 TATCGATATGGACTTTGATTCGTTGCTCTTGACATTGGGGTGTCTTAGTATCATATAAGTTATTT
1 TATCGATATGGACTTTGATTCGTTGCTCTTGACATTGGGGTGTCTTAGTATCATATAAGTTATTT
*
77292305 TGAAATAAAAGTTTTCTATCAATGAATT
66 TGAAATAAAAGATTTCTATCAATGAATT
77292333 T
1 T
77292334 TGAATTTGCT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (93 bp):
TATCGATATGGACTTTGATTCGTTGCTCTTGACATTGGGGTGTCTTAGTATCATATAAGTTATTT
TGAAATAAAAGATTTCTATCAATGAATT
Found at i:77294777 original size:41 final size:41
Alignment explanation
Indices: 77294681--77294791 Score: 133
Period size: 36 Copynumber: 2.8 Consensus size: 41
77294671 CCCGAATCAG
* * * *
77294681 TGAAAAGGGTGAAAAGGACGTTATCCAGAAAAGATATTGAA
1 TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGATATTAAA
77294722 TG---A--TTGAAAAGGATGTTATCCAGAAAGGATATTAAA
1 TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGATATTAAA
* *
77294758 TGAAAAGGTTGGAAAGGATGTTATCCAAAAAGGA
1 TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGA
77294792 CAACAAATGA
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
36 31 0.53
38 1 0.02
39 1 0.02
41 26 0.44
ACGTcount: A:0.45, C:0.06, G:0.26, T:0.23
Consensus pattern (41 bp):
TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGATATTAAA
Found at i:77302509 original size:243 final size:243
Alignment explanation
Indices: 77302078--77302555 Score: 803
Period size: 243 Copynumber: 2.0 Consensus size: 243
77302068 ACAATGTCAC
* * *
77302078 GACACACCAAGTCTTGTGTCATGACATTGAGGGCAATATGTTAAGTTTCTTGATGTCTTCAGGGG
1 GACACACCAAGTCCTGTGTCATGACATTGAGGGCAATATGCTAAGTTTCTTGATGTCTTCAAGGG
77302143 TATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTC
66 TATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTC
* *
77302208 TCCCTAAGTTGCGAAATCCCATGCTCCGTGTTGCAACCTAGCAACAATTATTGAGTTAATATGCC
131 TCCCTAAGCTGCGAAATCCCATGCTCCGTGTTGCAACCTAGCAACAATTATCGAGTTAATATGCC
77302273 TTCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTCGATGTCGT
196 TTCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTCGATGTCGT
* *
77302321 GACACACCAAGTCCTGTGTCGTGACATTGAGGGCAATATGCTAAGTTTCTTGTTGTCTTCAAGGG
1 GACACACCAAGTCCTGTGTCATGACATTGAGGGCAATATGCTAAGTTTCTTGATGTCTTCAAGGG
* * * **
77302386 TATTTCATGACATCCTTAGGCTGTGTCATGATATTGAAGGTAGTCTTGGATTTTTCTGATTCTTC
66 TATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTC
* * * * *
77302451 TCCCTATGCTGTGACATCCCATGCTCCGTGTTGCAATCTAGCAACCATTATCGAGTTAATATGCC
131 TCCCTAAGCTGCGAAATCCCATGCTCCGTGTTGCAACCTAGCAACAATTATCGAGTTAATATGCC
77302516 TTCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTC
196 TTCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTC
77302556 AACCTTAGGC
Statistics
Matches: 218, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
243 218 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (243 bp):
GACACACCAAGTCCTGTGTCATGACATTGAGGGCAATATGCTAAGTTTCTTGATGTCTTCAAGGG
TATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTC
TCCCTAAGCTGCGAAATCCCATGCTCCGTGTTGCAACCTAGCAACAATTATCGAGTTAATATGCC
TTCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTCGATGTCGT
Found at i:77306107 original size:49 final size:49
Alignment explanation
Indices: 77306038--77306273 Score: 287
Period size: 49 Copynumber: 4.8 Consensus size: 49
77306028 TAGCCAAAGC
**
77306038 TATCTGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
77306087 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCG-ACCAAT
* * * * *
77306137 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACTATCGA--AGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-T-GCGACCAAT
* *
77306186 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
77306235 TATCTGGTACACATAGTAGCCTACACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
77306274 CATGACCTCA
Statistics
Matches: 156, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
47 3 0.02
48 1 0.01
49 110 0.71
50 40 0.26
51 1 0.01
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:77306210 original size:99 final size:98
Alignment explanation
Indices: 77306050--77306274 Score: 292
Period size: 99 Copynumber: 2.3 Consensus size: 98
77306040 TCTGGTACGT
*
77306050 ATAGTAGCCTGCACTTAGTACTACACA-TGCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACACTGCGA-CAATTATCCGGTACACATAGTAGCCTGCACT
* *
77306114 TAGTACTACACACGTGAACTAACCATCTGATACAC
65 TAGTACTACACACGCG-ACCAACCATCTGATACAC
* * * * *
77306149 GTAGTAGCCTGCACTTAGTACTACACACTATCGA-AGTTATCGGGTACGCATAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACACT-GCGACAATTATCCGGTACACATAGTAGCCTGCACT
* ** *
77306213 TAGTACTACACATGCGACCAATTATCTGGTACAC
65 TAGTACTACACACGCGACCAACCATCTGATACAC
*
77306247 ATAGTAGCCTACACTTAGTACTACACAC
1 ATAGTAGCCTGCACTTAGTACTACACAC
77306275 ATGACCTCAC
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
98 40 0.36
99 66 0.60
100 1 0.01
101 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (98 bp):
ATAGTAGCCTGCACTTAGTACTACACACTGCGACAATTATCCGGTACACATAGTAGCCTGCACTT
AGTACTACACACGCGACCAACCATCTGATACAC
Found at i:77310638 original size:40 final size:40
Alignment explanation
Indices: 77310593--77310759 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77310583 CGGAATATAA
77310593 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77310633 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
77310673 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77310713 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77310752 CCGGATAT
1 CCGGATAT
77310760 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77310743 original size:80 final size:79
Alignment explanation
Indices: 77310593--77310759 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
77310583 CGGAATATAA
* *
77310593 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
77310658 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
77310673 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
77310735 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
77310752 CCGGATAT
1 CCGGATAT
77310760 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:77311608 original size:17 final size:19
Alignment explanation
Indices: 77311585--77311630 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
77311575 AAGAAGCATG
77311585 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
77311603 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
77311621 AATCATGCTC
1 AATCATGCTC
77311631 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:77317931 original size:40 final size:40
Alignment explanation
Indices: 77317886--77318052 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77317876 CGGAATATAA
77317886 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77317926 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
77317966 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77318006 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77318045 CCGGATAT
1 CCGGATAT
77318053 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77318036 original size:80 final size:79
Alignment explanation
Indices: 77317886--77318052 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
77317876 CGGAATATAA
* *
77317886 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
77317951 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
77317966 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
77318028 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
77318045 CCGGATAT
1 CCGGATAT
77318053 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:77318901 original size:17 final size:19
Alignment explanation
Indices: 77318878--77318923 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
77318868 AAGAAGCATG
77318878 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
77318896 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
77318914 AATCATGCTC
1 AATCATGCTC
77318924 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:77331777 original size:28 final size:28
Alignment explanation
Indices: 77331712--77331812 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77331702 ATAGTGAATC
*
77331712 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
77331741 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
77331769 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
77331799 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77331813 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77339718 original size:28 final size:28
Alignment explanation
Indices: 77339653--77339753 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
77339643 ATAGTGAATC
*
77339653 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
77339682 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
77339710 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
77339740 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77339754 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77345182 original size:38 final size:38
Alignment explanation
Indices: 77345139--77345215 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
77345129 AATTAAATGA
77345139 TAAAATAAATAAAACAAAACAAAGTATCATCTTTTTCT
1 TAAAATAAATAAAACAAAACAAAGTATCATCTTTTTCT
77345177 TAAAATAAATAAAACAAAACAAAGTATCATCTTTTTCT
1 TAAAATAAATAAAACAAAACAAAGTATCATCTTTTTCT
77345215 T
1 T
77345216 TCTTCTCCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (38 bp):
TAAAATAAATAAAACAAAACAAAGTATCATCTTTTTCT
Found at i:77346088 original size:25 final size:25
Alignment explanation
Indices: 77346060--77346176 Score: 112
Period size: 25 Copynumber: 4.7 Consensus size: 25
77346050 AATACTCCAC
*
77346060 AGCTCGTGAGAGCATACCGATTTAT
1 AGCTCGTGAGAGCATACCAATTTAT
*
77346085 AGCTTGTGAGAGCATACCGAA-TTAT
1 AGCTCGTGAGAGCATACC-AATTTAT
* ** *
77346110 AGCTCGTAAGAGCATAGTAATCTAT
1 AGCTCGTGAGAGCATACCAATTTAT
* * * *
77346135 AGCTCGAGTGACCATACCAATTCAT
1 AGCTCGTGAGAGCATACCAATTTAT
77346160 AGCTCGT-ATGAGCATAC
1 AGCTCGTGA-GAGCATAC
77346177 ATGTACATGA
Statistics
Matches: 71, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
24 2 0.03
25 68 0.96
26 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (25 bp):
AGCTCGTGAGAGCATACCAATTTAT
Found at i:77349167 original size:17 final size:17
Alignment explanation
Indices: 77349124--77349171 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
77349114 GCAATTCCCT
*
77349124 AATGCATTGACAA-GAA
1 AATGCAATGACAATGAA
* *
77349140 TATGTAATGACAATGAA
1 AATGCAATGACAATGAA
77349157 AATGCAATGACAATG
1 AATGCAATGACAATG
77349172 TATACTTATC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.23
Consensus pattern (17 bp):
AATGCAATGACAATGAA
Found at i:77367646 original size:40 final size:40
Alignment explanation
Indices: 77367561--77367711 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
77367551 AATTGAATGA
* * *
77367561 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
77367601 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
77367642 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
77367681 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
77367712 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:77367725 original size:40 final size:40
Alignment explanation
Indices: 77367597--77367727 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
77367587 TATGCTGGAA
* * *
77367597 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
77367637 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
77367677 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
77367717 ATTATATCCGG
1 ATTATATCCGG
77367728 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:77369613 original size:40 final size:40
Alignment explanation
Indices: 77369548--77369709 Score: 256
Period size: 40 Copynumber: 4.0 Consensus size: 40
77369538 TGGGATTTAA
* * * *
77369548 CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAATTGCCTTCGGGACTTAGC
77369588 CCGGATATAGTAACTCGCACCAA-TGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCA-CAATTGCCTTCGGGACTTAGC
77369628 CCGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGC
77369668 CCGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGC
77369708 CC
1 CC
77369710 AGTTATCATC
Statistics
Matches: 116, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
39 4 0.03
40 109 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGC
Found at i:77372810 original size:18 final size:18
Alignment explanation
Indices: 77372787--77372821 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
77372777 GGGTTTGATG
77372787 AACAAAATCTTCAGACCT
1 AACAAAATCTTCAGACCT
77372805 AACAAAATCTTCAGACC
1 AACAAAATCTTCAGACC
77372822 GCATTTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.29, G:0.06, T:0.20
Consensus pattern (18 bp):
AACAAAATCTTCAGACCT
Found at i:77375596 original size:22 final size:22
Alignment explanation
Indices: 77375571--77375616 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
77375561 GCCAAAACAA
77375571 TATCAAAATAATATGGTTCATT
1 TATCAAAATAATATGGTTCATT
77375593 TATCAAAATAATATGGTTCATT
1 TATCAAAATAATATGGTTCATT
77375615 TA
1 TA
77375617 CCATAATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (22 bp):
TATCAAAATAATATGGTTCATT
Found at i:77378080 original size:25 final size:25
Alignment explanation
Indices: 77378046--77378160 Score: 115
Period size: 25 Copynumber: 4.6 Consensus size: 25
77378036 TGCTCCACAT
*
77378046 CTCGTGAGAGCATATTGATTTATAG
1 CTCGTGAGAGCATACTGATTTATAG
* * *
77378071 CTCGTGAGAGTATACCGAATTATAG
1 CTCGTGAGAGCATACTGATTTATAG
* * *
77378096 CTCGTAAGAGCATACTAATCTATAG
1 CTCGTGAGAGCATACTGATTTATAG
* * * *
77378121 CTCGAGTGAGCATACTGATTCACAG
1 CTCGTGAGAGCATACTGATTTATAG
77378146 CTCGT-ATGAGCATAC
1 CTCGTGA-GAGCATAC
77378161 ATGTACATGA
Statistics
Matches: 70, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (25 bp):
CTCGTGAGAGCATACTGATTTATAG
Found at i:77384088 original size:21 final size:20
Alignment explanation
Indices: 77384058--77384099 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
77384048 ATTTTTTGAA
77384058 TTTATATATTTTTTTATTTTC
1 TTTATATA-TTTTTTATTTTC
*
77384079 TTTATTTATTTTTTATTTTC
1 TTTATATATTTTTTATTTTC
77384099 T
1 T
77384100 AGATTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTATATATTTTTTATTTTC
Found at i:77384105 original size:20 final size:20
Alignment explanation
Indices: 77384067--77384107 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
77384057 ATTTATATAT
**
77384067 TTTTTTATTTTCTTTATTTA
1 TTTTTTATTTTCTAGATTTA
77384087 TTTTTTATTTTCTAGATTTA
1 TTTTTTATTTTCTAGATTTA
77384107 T
1 T
77384108 ATATTTCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTTTATTTTCTAGATTTA
Found at i:77385796 original size:182 final size:171
Alignment explanation
Indices: 77385480--77385936 Score: 558
Period size: 182 Copynumber: 2.6 Consensus size: 171
77385470 ATGCCCGTGT
* * * * * *
77385480 CATAGGCCATGTGGACATTTGAAATGGGAGTACATGGTCGTGTCCTAGCCTATGGT-CTACCCCA
1 CATAGGCCGTGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCTAGCCCAT-GTCCTACCCCG
* * *
77385544 TGTAACTCTCTGTCTTGGGTCACACGAACAATACACACACTTGTGTGGCTAGCCCGTGTGCCCTA
65 TGTAACTCTCTGACTTGGGTCACACGACCAATACACACACCTGTGTGGCTAGCCCGTGTGCCCTA
* * * *
77385609 AAAATGGCCATAAATGCTAGTGTGTCAGG-CCATGTGTCTCACACGG
130 AAAATGGCCATAAACGCGAGTGTGCCAGGAACA--TG-C-C-CACGG
*
77385655 CTACTAGACACGCTCGTGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCCAGCCCATGTCCT
1 C-A-TAG----GC-CGTGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCTAGCCCATGTCCT
* * * *
77385720 ACCCCGTGTAACTCTCTGACTTGGGTCACATGACCAACACACACACCTGTTTGGCTGGCCCGTGT
59 ACCCCGTGTAACTCTCTGACTTGGGTCACACGACCAATACACACACCTGTGTGGCTAGCCCGTGT
* ** *
77385785 GCCCTAAAAATGGCCATAAACGCGCGTGTGCCAGGAACATGCCCGTGT
124 GCCCTAAAAATGGCCATAAACGCGAGTGTGCCAGGAACATGCCCACGG
*
77385833 CATAGGCCGTGTGGACATTCGAAATAAGAGCACATGGTCGTGTCCTAGCCCATGTCCTACCCCGT
1 CATAGGCCGTGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCTAGCCCATGTCCTACCCCGT
* *
77385898 GTAACTCTTTGACTTGGGTCACACAACCAATACACACAC
66 GTAACTCTCTGACTTGGGTCACACGACCAATACACACAC
77385937 ACGTGTGCCC
Statistics
Matches: 245, Mismatches: 28, Indels: 22
0.83 0.09 0.07
Matches are distributed among these distances:
171 91 0.37
172 2 0.01
175 1 0.00
176 4 0.02
177 4 0.02
178 3 0.01
179 1 0.00
180 1 0.00
181 6 0.02
182 130 0.53
183 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (171 bp):
CATAGGCCGTGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCTAGCCCATGTCCTACCCCGT
GTAACTCTCTGACTTGGGTCACACGACCAATACACACACCTGTGTGGCTAGCCCGTGTGCCCTAA
AAATGGCCATAAACGCGAGTGTGCCAGGAACATGCCCACGG
Found at i:77387343 original size:26 final size:24
Alignment explanation
Indices: 77387212--77387353 Score: 110
Period size: 24 Copynumber: 5.8 Consensus size: 24
77387202 GGCTATGATT
*
77387212 AGTAAGCTCCTT-CTGAGCTGATGGAC
1 AGTAAGCT-CTTAC-GAGCTGAT-AAC
*
77387238 AGTAAGCTC-TATTGAGCTGA-AAC
1 AGTAAGCTCTTA-CGAGCTGATAAC
* * * * *
77387261 GGTTAGCTCTAACAAGCTGAAAAC
1 AGTAAGCTCTTACGAGCTGATAAC
*
77387285 AGTAAGCTCTTACGAGCTGGTAAC
1 AGTAAGCTCTTACGAGCTGATAAC
*
77387309 AGTAAGCTCTTGCGAGCTGATATATC
1 AGTAAGCTCTTACGAGCTGATA-A-C
* *
77387335 GGTAAGCTCATACGAGCTG
1 AGTAAGCTCTTACGAGCTG
77387354 TGGTGAGTCC
Statistics
Matches: 92, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
23 15 0.16
24 43 0.47
25 9 0.10
26 25 0.27
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (24 bp):
AGTAAGCTCTTACGAGCTGATAAC
Found at i:77389415 original size:36 final size:35
Alignment explanation
Indices: 77389375--77389492 Score: 121
Period size: 36 Copynumber: 3.3 Consensus size: 35
77389365 GGTACAGCCG
77389375 AAACACACCAGATGCACATAAAAGCTAATCTATCTA
1 AAACACACCAGATGCACATAAAAGCTAATC-ATCTA
* * * *
77389411 AAACAAACCAAAT-TATCATAAAAGCTAATCCATCTG
1 AAACACACCAGATGCA-CATAAAAGCTAAT-CATCTA
* * * *
77389447 AAACACACCAGATGCTCATAAGAGTTAATACAACTA
1 AAACACACCAGATGCACATAAAAGCTAAT-CATCTA
77389483 AAACACACCA
1 AAACACACCA
77389493 AAAACTGGGA
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
35 1 0.02
36 64 0.97
37 1 0.02
ACGTcount: A:0.49, C:0.25, G:0.08, T:0.19
Consensus pattern (35 bp):
AAACACACCAGATGCACATAAAAGCTAATCATCTA
Found at i:77413483 original size:23 final size:23
Alignment explanation
Indices: 77413457--77413501 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77413447 TGGGTATGTG
*
77413457 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
77413480 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
77413502 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:77416158 original size:47 final size:47
Alignment explanation
Indices: 77416104--77416391 Score: 423
Period size: 47 Copynumber: 6.1 Consensus size: 47
77416094 TTAGGATTTT
** * *
77416104 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
77416151 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
77416198 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
77416245 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * **
77416292 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGTAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
77416339 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
77416386 ATGTGA
1 ATGTGA
77416392 AATATATATA
Statistics
Matches: 215, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 215 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:77416204 original size:22 final size:22
Alignment explanation
Indices: 77416133--77416204 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
77416123 GTATATATGA
77416133 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
77416155 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
77416180 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
77416202 GAT
1 GAT
77416205 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:77416253 original size:25 final size:25
Alignment explanation
Indices: 77416178--77416253 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
77416168 ATGCATATAT
77416178 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
77416203 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
77416225 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
77416250 GTGA
1 GTGA
77416254 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:77416703 original size:37 final size:37
Alignment explanation
Indices: 77416595--77416703 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
77416585 GGAAATATAA
*
77416595 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
77416632 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
77416669 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
77416704 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:77418028 original size:40 final size:40
Alignment explanation
Indices: 77417973--77418244 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
77417963 GAGAATTAAG
77417973 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
77418013 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
77418053 AGTGATGTATCTGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
77418093 AGTGATGTATCTGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
77418133 AGTGATATATCAGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
77418173 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
77418213 GGTGTTATATTCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
77418245 ATCATGCTGG
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:77422191 original size:47 final size:47
Alignment explanation
Indices: 77422137--77422322 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 47
77422127 TTAGGATTTT
** * *
77422137 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
77422184 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
77422231 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
77422278 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
77422323 TAGTGTGAAA
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 127 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:77422237 original size:22 final size:22
Alignment explanation
Indices: 77422166--77422237 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
77422156 GTATATATGA
77422166 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
77422188 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
77422213 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
77422235 GAT
1 GAT
77422238 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:77422286 original size:25 final size:25
Alignment explanation
Indices: 77422211--77422286 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
77422201 ATGCATATAT
77422211 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
77422236 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
77422258 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
77422283 GTGA
1 GTGA
77422287 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:77422592 original size:37 final size:37
Alignment explanation
Indices: 77422484--77422592 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
77422474 GGAAATATAT
*
77422484 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
**
77422521 TCTAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
77422558 TCCGGGTAAGACCCGTTAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
77422593 CGTCTGAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:77424490 original size:28 final size:27
Alignment explanation
Indices: 77424427--77424496 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
77424417 ATAGTGAGTC
77424427 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
77424454 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
77424482 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77424497 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:77432347 original size:28 final size:27
Alignment explanation
Indices: 77432284--77432353 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
77432274 ATAGTGAGTC
77432284 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
77432311 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
77432339 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77432354 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:77434247 original size:17 final size:17
Alignment explanation
Indices: 77434222--77434256 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
77434212 TTCAATTTCA
77434222 TAATTTATTC-ACTATT
1 TAATTTATTCTACTATT
77434238 TAATTCTATTCTACTATT
1 TAATT-TATTCTACTATT
77434256 T
1 T
77434257 TAGTGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (17 bp):
TAATTTATTCTACTATT
Found at i:77435167 original size:29 final size:29
Alignment explanation
Indices: 77435135--77435207 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
77435125 CTTCGAGCTC
77435135 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77435164 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77435193 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77435208 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:77443088 original size:29 final size:29
Alignment explanation
Indices: 77443056--77443128 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
77443046 CTTCGAGCTC
77443056 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77443085 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77443114 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77443129 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:77445280 original size:43 final size:44
Alignment explanation
Indices: 77445218--77445301 Score: 134
Period size: 43 Copynumber: 1.9 Consensus size: 44
77445208 ATCGAAATAT
77445218 GATATTCGAGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
1 GATATTCGAGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
* * *
77445262 GATA-TCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GATATTCGAGCTTCGAGCCTAGCAGGCTATAATGCCAGTGA
77445302 AATGAAATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 33 0.89
44 4 0.11
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (44 bp):
GATATTCGAGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
Found at i:77445856 original size:38 final size:38
Alignment explanation
Indices: 77445582--77445854 Score: 404
Period size: 38 Copynumber: 7.1 Consensus size: 38
77445572 ATTTGATGTG
*
77445582 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* *
77445622 TATCCGAGCTTCAAGA-CCCGCAGGCTTCGTGCTGGTATTA
1 TATCCG-GGTT-AA-ATCCCGCAGGCTTCGTGCTGGTAATA
*
77445662 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
77445700 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
77445738 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
77445776 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
77445814 TATTCGGGTTAAATCCCGCAGGCCTAGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
77445852 TAT
1 TAT
77445855 TCAGTCCTTT
Statistics
Matches: 218, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
37 1 0.00
38 173 0.79
39 3 0.01
40 37 0.17
41 3 0.01
42 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:77445909 original size:45 final size:44
Alignment explanation
Indices: 77445860--77445982 Score: 146
Period size: 45 Copynumber: 2.8 Consensus size: 44
77445850 TATATTCAGT
* * * *
77445860 CCTTTGAGCCTAGCAGGCTATTATGTCGGTGAGAT-ACTATTCGGG
1 CCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGA-TA-TCGAG
*
77445905 CCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATGATATCGAG
1 CCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCGAG
*
77445949 CC-TTGAGCCTAGCAGGCGA-AATGCCGGTGA-ATGA
1 CCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGA
77445983 ATAAAAGTCT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
41 4 0.06
42 11 0.16
43 15 0.21
44 6 0.09
45 33 0.47
46 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (44 bp):
CCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCGAG
Found at i:77451389 original size:38 final size:38
Alignment explanation
Indices: 77451324--77451672 Score: 500
Period size: 38 Copynumber: 9.1 Consensus size: 38
77451314 ATTTGATGTG
* * *
77451324 TATCCGGGCTTAAAGACCCACAGGCTTCATGCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
*
77451364 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
77451402 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * *
77451440 TATCCGAGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTA
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* *
77451480 TATCTGGGTTAAATCTCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
77451518 TATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
77451556 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
77451594 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
77451632 TATCCGGGTTAAATCTCGCAGGCCTAGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
77451670 TAT
1 TAT
77451673 TCAGGCCTTT
Statistics
Matches: 281, Mismatches: 26, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 229 0.81
39 17 0.06
40 35 0.12
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:77451528 original size:116 final size:115
Alignment explanation
Indices: 77451324--77451672 Score: 529
Period size: 116 Copynumber: 3.0 Consensus size: 115
77451314 ATTTGATGTG
* *
77451324 TATCCGGGCTTAAAGACCCACAGGCTTCATGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
1 TATCC-GGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
77451389 CGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
65 CGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * *
77451440 TATCCGAGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTATATCTGGGTTAAATCTCGCAGGCTT
1 TATCCG-GCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
* *
77451505 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAATA
65 CGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
77451556 TATCTGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTC
1 TATCCGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTC
* * * * *
77451620 GTGCTGGTATTATATCCGGGTTAAATCTCGCAGGCCTAGTACTGGTATTA
66 GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
77451670 TAT
1 TAT
77451673 TCAGGCCTTT
Statistics
Matches: 210, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
114 92 0.44
115 7 0.03
116 111 0.53
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (115 bp):
TATCCGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTC
GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:77451725 original size:45 final size:45
Alignment explanation
Indices: 77451669--77451800 Score: 150
Period size: 45 Copynumber: 3.0 Consensus size: 45
77451659 TACTGGTATT
* * *
77451669 ATATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGAT-
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
*
77451713 ACTATTCGGGCCTTTAAGCCTA-CTAGGCTATAATGCCGGTGACATG
1 A-TATTCGGGCCTTTGAGCCTAGC-AGGCTATAATGCCGGTGACATG
* *
77451759 ATA-TCGAGCC-TTGAGCCTAGCAGGCGA-AATGCCGGTGA-ATG
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
77451800 A
1 A
77451801 ATAAAAGTCT
Statistics
Matches: 77, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
41 4 0.05
42 11 0.14
43 13 0.17
44 9 0.12
45 39 0.51
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
Found at i:77453474 original size:32 final size:32
Alignment explanation
Indices: 77453437--77453502 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
77453427 CTATCATATG
77453437 ATGGCATAATAACATAATCACCAAGATTATTC
1 ATGGCATAATAACATAATCACCAAGATTATTC
77453469 ATGGCATAATAACATAATCACCAAGATTATTC
1 ATGGCATAATAACATAATCACCAAGATTATTC
77453501 AT
1 AT
77453503 CATTCAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (32 bp):
ATGGCATAATAACATAATCACCAAGATTATTC
Found at i:77454291 original size:16 final size:16
Alignment explanation
Indices: 77454270--77454323 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
77454260 AGAATTAGAT
77454270 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
77454286 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
77454296 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
77454312 AAAATTTGAAAT
1 AAAATTTGAAAT
77454324 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:77454547 original size:15 final size:14
Alignment explanation
Indices: 77454511--77454547 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
77454501 TAACCCACCC
77454511 TTAACCCTTAAATA
1 TTAACCCTTAAATA
*
77454525 TTAACCCTTAAATC
1 TTAACCCTTAAATA
77454539 TTAAACCCT
1 TT-AACCCT
77454548 AAACCCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.35
Consensus pattern (14 bp):
TTAACCCTTAAATA
Found at i:77454557 original size:14 final size:14
Alignment explanation
Indices: 77454540--77454767 Score: 98
Period size: 14 Copynumber: 16.4 Consensus size: 14
77454530 CCTTAAATCT
*
77454540 TAAACCCTAAACCC
1 TAAACCCTAAACCA
77454554 TAAACTCCTAAACC-
1 TAAAC-CCTAAACCA
*
77454568 -CAACCCTTAAACCA
1 TAAACCC-TAAACCA
* *
77454582 TAAACCATAATCCA
1 TAAACCCTAAACCA
77454596 TAAACCC-ACAATCCA
1 TAAACCCTA-AA-CCA
* * *
77454611 TAATCCATAATCCA
1 TAAACCCTAAACCA
* **
77454625 TAAACCTTAAAATA
1 TAAACCCTAAACCA
* *
77454639 TTAACTCATAAACCA
1 TAAAC-CCTAAACCA
*
77454654 TAAATCCCTAAACCT
1 TAAA-CCCTAAACCA
* *
77454669 TAAACCCCAACCCA
1 TAAACCCTAAACCA
*
77454683 TAATCCCTAAACTCA
1 TAAACCCTAAAC-CA
*
77454698 T-AA---T---TCA
1 TAAACCCTAAACCA
**
77454705 TAAACCCTAAAATA
1 TAAACCCTAAACCA
* *
77454719 TTAACTCATAAACCA
1 TAAAC-CCTAAACCA
**
77454734 TAAACTTTAAACCA
1 TAAACCCTAAACCA
*
77454748 TATACCCTAAACCA
1 TAAACCCTAAACCA
77454762 TAAACC
1 TAAACC
77454768 TTAGACTATA
Statistics
Matches: 154, Mismatches: 42, Indels: 36
0.66 0.18 0.16
Matches are distributed among these distances:
7 3 0.02
8 2 0.01
11 2 0.01
12 2 0.01
13 10 0.06
14 79 0.51
15 54 0.35
16 2 0.01
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:77454565 original size:8 final size:7
Alignment explanation
Indices: 77454540--77454602 Score: 58
Period size: 7 Copynumber: 9.0 Consensus size: 7
77454530 CCTTAAATCT
77454540 TAAACCC
1 TAAACCC
77454547 TAAACCC
1 TAAACCC
77454554 TAAACTCC
1 TAAAC-CC
77454562 TAAACCC
1 TAAACCC
77454569 --AACCC
1 TAAACCC
*
77454574 TTAAACCA
1 -TAAACCC
*
77454582 TAAACCA
1 TAAACCC
* *
77454589 TAATCCA
1 TAAACCC
77454596 TAAACCC
1 TAAACCC
77454603 ACAATCCATA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
5 5 0.10
7 32 0.67
8 11 0.23
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:77454565 original size:22 final size:22
Alignment explanation
Indices: 77454527--77454587 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
77454517 CTTAAATATT
*
77454527 AACCCTTAAATCTTAAACCCTA
1 AACCCTTAAATCCTAAACCCTA
77454549 AACCC-TAAACTCCTAAACCC--
1 AACCCTTAAA-TCCTAAACCCTA
77454569 AACCCTTAAA-CCATAAACC
1 AACCCTTAAATCC-TAAACC
77454588 ATAATCCATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 2 0.06
20 11 0.31
21 8 0.23
22 14 0.40
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.20
Consensus pattern (22 bp):
AACCCTTAAATCCTAAACCCTA
Found at i:77454586 original size:35 final size:34
Alignment explanation
Indices: 77454538--77454630 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 34
77454528 ACCCTTAAAT
* *
77454538 CTTAAACCCTAAACCCTAAACTCC-TAAACCCAACC
1 CTTAAACCATAAACCAT-AA-TCCATAAACCCAACC
77454573 CTTAAACCATAAACCATAATCCATAAACCC-A--
1 CTTAAACCATAAACCATAATCCATAAACCCAACC
* *
77454604 C--AATCCATAATCCATAATCCATAAACC
1 CTTAAACCATAAACCATAATCCATAAACC
77454631 TTAAAATATT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
29 24 0.45
31 1 0.02
33 4 0.08
34 9 0.17
35 15 0.28
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.19
Consensus pattern (34 bp):
CTTAAACCATAAACCATAATCCATAAACCCAACC
Found at i:77454587 original size:7 final size:7
Alignment explanation
Indices: 77454575--77454767 Score: 107
Period size: 7 Copynumber: 26.9 Consensus size: 7
77454565 ACCCAACCCT
77454575 TAAACCA
1 TAAACCA
77454582 TAAACCA
1 TAAACCA
*
77454589 TAATCCA
1 TAAACCA
77454596 TAAACCCA
1 TAAA-CCA
* *
77454604 CAATCCA
1 TAAACCA
*
77454611 TAATCCA
1 TAAACCA
*
77454618 TAATCCA
1 TAAACCA
*
77454625 TAAACCT
1 TAAACCA
**
77454632 TAAAATA
1 TAAACCA
*
77454639 TTAACTCA
1 TAAAC-CA
77454647 TAAACCA
1 TAAACCA
*
77454654 TAAATCCC
1 TAAA-CCA
*
77454662 TAAACCT
1 TAAACCA
*
77454669 TAAACCC
1 TAAACCA
* *
77454676 CAACCCA
1 TAAACCA
* *
77454683 TAATCCC
1 TAAACCA
77454690 TAAACTCA
1 TAAAC-CA
**
77454698 TAATTCA
1 TAAACCA
*
77454705 TAAACCC
1 TAAACCA
**
77454712 TAAAATA
1 TAAACCA
*
77454719 TTAACTCA
1 TAAAC-CA
77454727 TAAACCA
1 TAAACCA
**
77454734 TAAACTT
1 TAAACCA
77454741 TAAACCA
1 TAAACCA
* *
77454748 TATACCC
1 TAAACCA
77454755 TAAACCA
1 TAAACCA
77454762 TAAACC
1 TAAACC
77454768 TTAGACTATA
Statistics
Matches: 136, Mismatches: 45, Indels: 10
0.71 0.24 0.05
Matches are distributed among these distances:
7 111 0.82
8 25 0.18
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:77454712 original size:22 final size:21
Alignment explanation
Indices: 77454681--77454765 Score: 71
Period size: 22 Copynumber: 4.0 Consensus size: 21
77454671 AACCCCAACC
* *
77454681 CATAATCCCTAAACTCATAATT
1 CATAAACCCTAAACT-ATAAAT
* *
77454703 CATAAACCCTAAAATATTAACT
1 CATAAACCCTAAACTA-TAAAT
* * *
77454725 CATAAACCATAAACTTTAAAC
1 CATAAACCCTAAACTATAAAT
* *
77454746 CATATACCCTAAACCATAAA
1 CATAAACCCTAAACTATAAA
77454766 CCTTAGACTA
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 20 0.40
22 30 0.60
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (21 bp):
CATAAACCCTAAACTATAAAT
Found at i:77455364 original size:39 final size:40
Alignment explanation
Indices: 77455313--77455407 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
77455303 AATTTGAGGT
* ** * *
77455313 GTTTTTTAAAAAATGCCGGTAATGCTCGATCTATAGCAGC
1 GTTTTTCAAAAAGCGCCGCTAAAGCTCGATCTATAGCAGC
*
77455353 GTTTTTCAAAAAGCGCCGCTAAAGCTCGATCTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAAAGCTCGATCTATAGCAGC
*
77455393 GTTTTCCAAAAAGCG
1 GTTTTTCAAAAAGCG
77455408 TTGCTAATGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAAAGCTCGATCTATAGCAGC
Found at i:77455365 original size:115 final size:113
Alignment explanation
Indices: 77455077--77455374 Score: 346
Period size: 114 Copynumber: 2.6 Consensus size: 113
77455067 TAAAATATTT
* * * * * *
77455077 TTTGCGGCGTTTTTGAAAAAGCGCTGCTATAGCTAGATCTATAGCGGCTTTTTTCAAAAAGCGCC
1 TTTGAGGCGTTTTTTAAAAA-CGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCC
* **
77455142 GCTAATACCACTAAGGCAAAAAAAAAAAAAGGGCGTGTTGATGAATTAA
65 GCTAATACCACTAAAGCAAAAAAAAAAAAACCGCGTGTTGATGAATTAA
* * **
77455191 TTTGCGGCGTTTTTTAAAAGCGCCGCTAAAGCTCGATCTATAGCGGCG-TTTTCGAAAAAGTACC
1 TTTGAGGCGTTTTTTAAAAACGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTC-AAAAAGCGCC
* * * **
77455255 GCTAATGCCACTAAAGCTCAACAAAAAACGACCGCGTGTTGATGAATTAA
65 GCTAATACCACTAAAGC-AAAAAAAAAAAAACCGCGTGTTGATGAATTAA
* * * * *
77455305 TTTGAGGTGTTTTTTAAAAAATGCCGGTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCC
1 TTTGAGGCGTTTTTT-AAAAACGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCC
77455370 GCTAA
65 GCTAA
77455375 AGCTCGATCT
Statistics
Matches: 155, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
112 5 0.03
113 47 0.30
114 57 0.37
115 41 0.26
116 5 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (113 bp):
TTTGAGGCGTTTTTTAAAAACGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCG
CTAATACCACTAAAGCAAAAAAAAAAAAACCGCGTGTTGATGAATTAA
Found at i:77455538 original size:97 final size:100
Alignment explanation
Indices: 77455366--77455615 Score: 301
Period size: 97 Copynumber: 2.5 Consensus size: 100
77455356 TTTCAAAAAG
* * * *
77455366 CGCCGCTAAAGCTCGATCTATAGCGGCGTTTTCCAAAAAGCGTTGCTAATGCCACTAAGGCTAAC
1 CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGTCGCTAATGACACTAAGGCTAAC
77455431 AAAAAGACG-A-CGTGTTGATGAAATAATTTGCAA
66 AAAAAGACGAAGCGTGTTGATGAAATAATTTGCAA
* *
77455464 CGCCGCTAATGCTC-ATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTGATGACACTAAGGCTCAA
1 CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGTCGCTAATGACACTAAGGCT-AA
* * **
77455528 CAAAAA-ACGACAGCGTGTTGATGAATTATTTTGCGG
65 CAAAAAGACGA-AGCGTGTTGATGAAATAATTTGCAA
*** * * *
77455564 CGTTTTCTAATGTTCGATCTATAACGGTGTTTTTCAAAAAGCGTCGCTAATG
1 CG-CCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGTCGCTAATG
77455616 CTTGATCTAT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
97 45 0.35
98 21 0.16
99 1 0.01
100 21 0.16
101 8 0.06
102 32 0.25
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (100 bp):
CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGTCGCTAATGACACTAAGGCTAAC
AAAAAGACGAAGCGTGTTGATGAAATAATTTGCAA
Found at i:77455625 original size:40 final size:39
Alignment explanation
Indices: 77455570--77455694 Score: 126
Period size: 40 Copynumber: 3.1 Consensus size: 39
77455560 GCGGCGTTTT
* * *
77455570 CTAATGTTCGATCTATAACGGTGTTTTTC-AAAAAGCGTCG
1 CTAATGTT-GATCTATAGCGGCGTTTTTCTAAAAA-CGCCG
*
77455610 CTAATGCTTGATCTATAGCGGCGCTTTTCTAAAAACGCCG
1 CTAATG-TTGATCTATAGCGGCGTTTTTCTAAAAACGCCG
* * * *
77455650 CTAGTGGTCGATCTATAGCGGCGTTTTTTGTACAAACGCCG
1 CTAAT-GTTGATCTATAGCGGCG-TTTTTCTAAAAACGCCG
77455691 CTAA
1 CTAA
77455695 AAACTTGTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
40 46 0.65
41 25 0.35
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (39 bp):
CTAATGTTGATCTATAGCGGCGTTTTTCTAAAAACGCCG
Found at i:77460805 original size:21 final size:21
Alignment explanation
Indices: 77460776--77460822 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
77460766 TTCTTTTACA
*
77460776 TTTTATAT-AAAATTTTAATAT
1 TTTTATATAAAAATTGTAA-AT
*
77460797 TTTTTTATAAAAATTGTAAAT
1 TTTTATATAAAAATTGTAAAT
77460818 TTTTA
1 TTTTA
77460823 AAATGTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTTATATAAAAATTGTAAAT
Found at i:77460809 original size:22 final size:22
Alignment explanation
Indices: 77460776--77460821 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
77460766 TTCTTTTACA
*
77460776 TTTTATATAAAATTTTAATATTT
1 TTTTATATAAAATTGTAA-ATTT
77460799 TTTTATA-AAAATTGTAAATTT
1 TTTTATATAAAATTGTAAATTT
77460820 TT
1 TT
77460822 AAAATGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 9 0.41
23 7 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTTATATAAAATTGTAAATTT
Found at i:77461232 original size:11 final size:11
Alignment explanation
Indices: 77461216--77461240 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77461206 AATTTTTAAA
77461216 TTTTAATAATT
1 TTTTAATAATT
77461227 TTTTAATAATT
1 TTTTAATAATT
77461238 TTT
1 TTT
77461241 ACAACTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTAATAATT
Found at i:77461235 original size:28 final size:28
Alignment explanation
Indices: 77461204--77461281 Score: 77
Period size: 30 Copynumber: 2.7 Consensus size: 28
77461194 TTAAAAAATT
**
77461204 ATAATTTTTA-AATTTTAATAATTTTTTA
1 ATAATTTTTACAATTTTAAT-ATTTTAAA
77461232 ATAATTTTTACAACTTTTTAATATTTTAAA
1 ATAATTTTTACAA--TTTTAATATTTTAAA
* *
77461262 ATGATTTTTATATATTTTAA
1 ATAATTTTTACA-ATTTTAA
77461282 AATAAATTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
28 10 0.24
29 8 0.19
30 16 0.38
31 8 0.19
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (28 bp):
ATAATTTTTACAATTTTAATATTTTAAA
Found at i:77461239 original size:20 final size:19
Alignment explanation
Indices: 77461214--77461284 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 19
77461204 ATAATTTTTA
77461214 AATTTTAATAATTTTTTAAT
1 AATTTTAA-AATTTTTTAAT
* *
77461234 AATTTTTACAACTTTTTAAT
1 AA-TTTTAAAATTTTTTAAT
77461254 -ATTTTAAAATGATTTTT-AT
1 AATTTTAAAAT--TTTTTAAT
77461273 ATATTTTAAAAT
1 A-ATTTTAAAAT
77461285 AAATTTCGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
18 7 0.17
19 3 0.07
20 17 0.40
21 15 0.36
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.56
Consensus pattern (19 bp):
AATTTTAAAATTTTTTAAT
Found at i:77463665 original size:42 final size:43
Alignment explanation
Indices: 77463564--77463667 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 43
77463554 TCCGAGCTCA
* * * * *
77463564 TTGAGCGGTCCGAGTTCGTGATATATGTGAGAATCTGAACTTG
1 TTGAGTGGTCCGAGTTCATGATATATGTGAGAACCTGAAATCG
* * *
77463607 TTGAGTGGCCCAAGTTCATGATATATGTG-GCACCT-AAGATCG
1 TTGAGTGGTCCGAGTTCATGATATATGTGAGAACCTGAA-ATCG
77463649 TTGAGTGGTCCGAGTTCAT
1 TTGAGTGGTCCGAGTTCAT
77463668 TATGGATGCG
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
41 2 0.04
42 23 0.46
43 25 0.50
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (43 bp):
TTGAGTGGTCCGAGTTCATGATATATGTGAGAACCTGAAATCG
Found at i:77469372 original size:27 final size:28
Alignment explanation
Indices: 77469342--77469411 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
77469332 ATAATAAGTC
*
77469342 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
77469369 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
77469397 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77469412 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77477307 original size:27 final size:28
Alignment explanation
Indices: 77477277--77477346 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
77477267 ATAATAAGTC
*
77477277 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
77477304 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
77477332 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77477347 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77492568 original size:28 final size:29
Alignment explanation
Indices: 77492536--77492607 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
77492526 TACAGTAAGT
77492536 CCGCACACTTAGTGCT-TA-ATATTCAAAC
1 CCGCACACTTAGTGCTATACA-ATTCAAAC
77492564 CCGCACACTTAGTGCTATACAATTCAAAC
1 CCGCACACTTAGTGCTATACAATTCAAAC
* *
77492593 TCACACACTTAGTGC
1 CCGCACACTTAGTGC
77492608 CAATCTCATT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
28 16 0.40
29 23 0.57
30 1 0.03
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.26
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAATTCAAAC
Found at i:77495568 original size:27 final size:27
Alignment explanation
Indices: 77495518--77496018 Score: 323
Period size: 27 Copynumber: 18.5 Consensus size: 27
77495508 TTAGTTTACC
* *
77495518 AAATTACCAAAATA-CATCTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
77495545 AAATTACCAAAATACCCAT-GGTTTGTA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
77495572 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
77495599 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
** **
77495626 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
77495653 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
77495680 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
77495707 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
77495734 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACCAAAATACCCTCGA-TTTGTA
**
77495761 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** * * **
77495788 AAATTACTGAAATACTCTTG-TAAGATA
1 AAATTACCAAAATACCCTCGATTTG-TA
* *** * **
77495815 GAATTACCATTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** *
77495842 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** * **
77495869 GAATTACCATTTTACCCACGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
** * * **
77495896 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
**
77495923 AAATTACCAAAAATACCCTCGATTAATA
1 AAATTACC-AAAATACCCTCGATTTGTA
*
77495951 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
77495978 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
77496005 GAATTACCGAAATA
1 AAATTACCAAAATA
77496019 TAGGGTAGAA
Statistics
Matches: 384, Mismatches: 78, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
26 5 0.01
27 351 0.91
28 27 0.07
29 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:77495956 original size:55 final size:54
Alignment explanation
Indices: 77495881--77495994 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 54
77495871 ATTACCATTT
* ** * *
77495881 TACCCACGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAAA
1 TACCCACGATTAACAAAATTACCAAAATACCCCTAGTTTACAAAATTACC-AAAA
* * **
77495936 TACCCTCGATTAATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCACGATTAACAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAA
77495990 TACCC
1 TACCC
77495995 CTGATTTGTG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
54 9 0.18
55 41 0.82
ACGTcount: A:0.43, C:0.24, G:0.06, T:0.27
Consensus pattern (54 bp):
TACCCACGATTAACAAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAA
Found at i:77496049 original size:27 final size:27
Alignment explanation
Indices: 77496019--77496203 Score: 307
Period size: 27 Copynumber: 6.9 Consensus size: 27
77496009 TACCGAAATA
*
77496019 TAGGGTAGAATTACAGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
77496046 TAGGGTAGAATTATCGTAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
77496073 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
77496100 TAGGGTAGAATTACCGAAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
*
77496127 TAGGGTAGAATTATCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
77496154 TAGGGTAGAATTACCAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
77496181 TAGGGTAGAATTACCGAGATACC
1 TAGGGTAGAATTACCGAAATACC
77496204 TTGTGGGGAA
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:77496681 original size:22 final size:22
Alignment explanation
Indices: 77496648--77496712 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
77496638 TTAAAGCCTT
* *
77496648 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
77496670 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGTGCCAAC
*
77496692 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
77496713 ACGTATTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 2 0.05
22 34 0.89
23 2 0.05
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:77496900 original size:27 final size:27
Alignment explanation
Indices: 77496870--77496972 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
77496860 TATTCTATTA
* *
77496870 AGTGGCTTTGCCACATTATCTGTTTCT
1 AGTGGCTATGCCACAATATCTGTTTCT
*
77496897 AGTGGCTATGCCACAAATATCT-ATTCT
1 AGTGGCTATGCCAC-AATATCTGTTTCT
* * *
77496924 GGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTATGCCACAATATCTGTTTCT
* * * *
77496951 GGTGACTCTGTCACAATATCTG
1 AGTGGCTATGCCACAATATCTG
77496973 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 52 0.80
28 6 0.09
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
AGTGGCTATGCCACAATATCTGTTTCT
Found at i:77497155 original size:31 final size:31
Alignment explanation
Indices: 77497109--77497250 Score: 194
Period size: 31 Copynumber: 4.5 Consensus size: 31
77497099 CTGCATTCAC
*
77497109 ATTCTGATTTTTGATTATGTTACCTGATACTA
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTA
* *
77497141 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
*
77497172 ATTCTAATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
* * * *
77497203 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTA
*
77497234 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
77497251 AGTTCTGATA
Statistics
Matches: 99, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 92 0.93
32 7 0.07
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTA
Found at i:77497214 original size:6 final size:6
Alignment explanation
Indices: 77497141--77497259 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
77497131 CCTGATACTA
* * *
77497141 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG ATTCTA ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * *
77497190 -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
77497240 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
77497260 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 12, Indels: 26
0.70 0.10 0.21
Matches are distributed among these distances:
5 7 0.08
6 67 0.76
7 10 0.11
8 3 0.03
9 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:77501193 original size:23 final size:23
Alignment explanation
Indices: 77501167--77501211 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77501157 AGCTGAGGCT
77501167 GTGTAGTGATGAA-TCACATGACC
1 GTGTAGTGAT-AATTCACATGACC
* *
77501190 GTGTATTGCTAATTCACATGAC
1 GTGTAGTGATAATTCACATGAC
77501212 TATGTATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (23 bp):
GTGTAGTGATAATTCACATGACC
Found at i:77504180 original size:22 final size:24
Alignment explanation
Indices: 77504141--77504199 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 24
77504131 ATTGAGCTGA
* *
77504141 AACAGTAAGCTCTGACGAG-T-TG
1 AACAGTAAGATCTGACGAGCTAAG
77504163 AACAGTAAGATCAT-ACGAGCTAAG
1 AACAGTAAGATC-TGACGAGCTAAG
77504187 AACAGTAAGATCT
1 AACAGTAAGATCT
77504200 TATGAGCTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 16 0.50
23 3 0.09
24 13 0.41
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.20
Consensus pattern (24 bp):
AACAGTAAGATCTGACGAGCTAAG
Found at i:77504193 original size:24 final size:24
Alignment explanation
Indices: 77504162--77504207 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
77504152 CTGACGAGTT
77504162 GAACAGTAAGATCATACGAGCTAA
1 GAACAGTAAGATCATACGAGCTAA
* *
77504186 GAACAGTAAGATCTTATGAGCT
1 GAACAGTAAGATCATACGAGCT
77504208 GATATGTCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (24 bp):
GAACAGTAAGATCATACGAGCTAA
Found at i:77505496 original size:21 final size:21
Alignment explanation
Indices: 77505465--77505525 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
77505455 CACTTGAAAC
*
77505465 AGGGC-ACACGCCTGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
77505485 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
* *
77505506 AGGGAAACATGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
77505526 CCCTGTTGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 5 0.14
21 32 0.86
ACGTcount: A:0.23, C:0.25, G:0.39, T:0.13
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:77506851 original size:48 final size:49
Alignment explanation
Indices: 77506796--77507017 Score: 207
Period size: 46 Copynumber: 4.7 Consensus size: 49
77506786 GTGCATTAAA
* *
77506796 GTCGATGCCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GT
* *
77506845 GT-GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
* * * **
77506893 GTCGATGCCATGTCCCAGACATGTCTTACACT-AGCTCT--TGTCTCAAT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGT
*
77506940 G-CTGATG-CATGTCCCAGACATGTCTTACACT-AGCTCTCATA-AT--GT
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGT
* *
77506985 GGCTGATG-CATGTCCCAGACATGTCTTACACTG
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTG
77507018 GCTCACAAAC
Statistics
Matches: 152, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
45 2 0.01
46 61 0.40
47 12 0.08
48 43 0.28
49 34 0.22
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGT
Found at i:77506921 original size:97 final size:93
Alignment explanation
Indices: 77506755--77507022 Score: 271
Period size: 95 Copynumber: 2.8 Consensus size: 93
77506745 AATGCCGACA
* * * *
77506755 GCATGTCCCAGACATGGTCTTACACTAGCTAGTGCATTAA--AGTCGATGCCGTGTCCCAGACAG
1 GCATGTCCCAGACA-GGTCTTACACTAGCT-CT-CA-TAATGTGTCGATGCCATGTCCCAGACAT
* *
77506818 GTCTTACACTGA-CTTTCATATATCGA-GGTGAT
62 GTCTTACACTGAGC--TCATATATCAATGCTGAT
* *
77506850 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCCCAGACAT
1 G-CATGTCCCAGACAGGTCTTACACTAGCTCTCAT-AAT--GTGTCGATGCCATGTCCCAGACAT
* * *
77506915 GTCTTACACT-AGCTCTTGTCTCAATGCTGAT
62 GTCTTACACTGAGCTCATATATCAATGCTGAT
* *
77506946 GCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCTGATG-CATGTCCCAGACATGTC
1 GCATGTCCCAGACAGGTCTTACACTAGCTCTCATAATGTGTC-GATGCCATGTCCCAGACATGTC
77507010 TTACACTG-GCTCA
65 TTACACTGAGCTCA
77507023 CAAACTACCC
Statistics
Matches: 147, Mismatches: 16, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
92 33 0.22
93 7 0.05
94 3 0.02
95 53 0.36
96 20 0.14
97 31 0.21
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (93 bp):
GCATGTCCCAGACAGGTCTTACACTAGCTCTCATAATGTGTCGATGCCATGTCCCAGACATGTCT
TACACTGAGCTCATATATCAATGCTGAT
Found at i:77511078 original size:23 final size:22
Alignment explanation
Indices: 77511038--77511081 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
77511028 CGATAAAGAG
77511038 TATTTGTTCCTTATAGTCAATT
1 TATTTGTTCCTTATAGTCAATT
* *
77511060 TATTTAGTTGCTTTTAGTCAAT
1 TATTT-GTTCCTTATAGTCAAT
77511082 ACACATTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.55
Consensus pattern (22 bp):
TATTTGTTCCTTATAGTCAATT
Found at i:77517365 original size:19 final size:19
Alignment explanation
Indices: 77517340--77517389 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
77517330 TGGTCTAAGG
77517340 ACACGGGCGTGTCCAGGGC
1 ACACGGGCGTGTCCAGGGC
* *
77517359 TCACGGGTGTGTCCAGGGC
1 ACACGGGCGTGTCCAGGGC
*
77517378 AAACGGGCGTGT
1 ACACGGGCGTGT
77517390 TCCTGCGCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.16, C:0.26, G:0.42, T:0.16
Consensus pattern (19 bp):
ACACGGGCGTGTCCAGGGC
Found at i:77518167 original size:22 final size:23
Alignment explanation
Indices: 77518116--77518194 Score: 74
Period size: 22 Copynumber: 3.4 Consensus size: 23
77518106 TGTGATGAAC
* * *
77518116 AGTAAGCTCTATTGAGCT-AAAAC
1 AGTAAGCTCTA-CGAGCTGAGAAT
*
77518139 AGTAAGCTCTGACGAG-T-TGAAT
1 AGTAAGCTCT-ACGAGCTGAGAAT
77518161 AGTAAGCTCATACGAGCTGAGAAT
1 AGTAAGCTC-TACGAGCTGAGAAT
77518185 AGTAAGCTCT
1 AGTAAGCTCT
77518195 TAGGAGATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
22 17 0.36
23 16 0.34
24 14 0.30
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCTACGAGCTGAGAAT
Found at i:77523248 original size:19 final size:20
Alignment explanation
Indices: 77523207--77523251 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
77523197 AGGGGCCTCG
*
77523207 ATGGGCCAAAATTGGGCCCA
1 ATGGGCCAAAACTGGGCCCA
77523227 ATGGGCCAAAACTGGG-CCA
1 ATGGGCCAAAACTGGGCCCA
77523246 ATGGGC
1 ATGGGC
77523252 TTACGGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.29, C:0.24, G:0.33, T:0.13
Consensus pattern (20 bp):
ATGGGCCAAAACTGGGCCCA
Found at i:77539861 original size:40 final size:40
Alignment explanation
Indices: 77539722--77539867 Score: 156
Period size: 40 Copynumber: 3.6 Consensus size: 40
77539712 GCTACTCGTT
*
77539722 CAAATGCCTTCGGGA-CTTA-ACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTC-CGGATTTAGTAACTCGCA
**
77539762 CAAATGCCTTCGGATCTTAGTCTAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * * *
77539802 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
77539843 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
77539868 CATCATTCGA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.85
41 11 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:77542575 original size:22 final size:23
Alignment explanation
Indices: 77542531--77542585 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 23
77542521 CTTTTTATAT
* * *
77542531 TTATTATTTATTATTCTTGTTTG
1 TTATTAGTTATTATACTTATTTG
*
77542554 TTATTA-TTATTATAGTTATTTG
1 TTATTAGTTATTATACTTATTTG
77542576 TT-TTAGTTAT
1 TTATTAGTTAT
77542586 ATGTTTTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.11
22 19 0.68
23 6 0.21
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.67
Consensus pattern (23 bp):
TTATTAGTTATTATACTTATTTG
Found at i:77545312 original size:25 final size:25
Alignment explanation
Indices: 77545284--77545378 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
77545274 CAGGACCATT
*
77545284 TTCACAGCTTGTGTGAGCATTTTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
* *
77545309 TTCACAACTCGTGTGAGCATTCTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
*
77545334 TTCACAGCTCGTGTGAACATTTTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
* *
77545359 TTCACAGCTCTTATGAGCAT
1 TTCACAGCTCGTGTGAGCAT
77545379 ACATGTATAG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTTTGA
Found at i:77553871 original size:52 final size:51
Alignment explanation
Indices: 77553793--77553939 Score: 203
Period size: 52 Copynumber: 2.9 Consensus size: 51
77553783 CCCTTGTAGT
* *
77553793 CAAAGCTA-CCTTCTTCACAAAGTGGCCTTTACATAGTACCACACTTATGAC
1 CAAAGCTATCTTTCTTCAC-AAGTGGCCTTCACATAGTACCACACTTATGAC
*
77553844 CAAAGCTATCTTTCTTCACAATGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATCTTTCTTCACAA-GTGGCCTTCACATAGTACCACACTTATGAC
*
77553896 C-AAGCTATCTCTTC-TCA-AAGTGGCCTTCACGTAGTACCACACTT
1 CAAAGCTATCT-TTCTTCACAAGTGGCCTTCACATAGTACCACACTT
77553940 GAGTCACTAG
Statistics
Matches: 89, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
49 24 0.27
50 2 0.02
51 22 0.25
52 41 0.46
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (51 bp):
CAAAGCTATCTTTCTTCACAAGTGGCCTTCACATAGTACCACACTTATGAC
Found at i:77555133 original size:30 final size:30
Alignment explanation
Indices: 77555099--77555174 Score: 143
Period size: 30 Copynumber: 2.5 Consensus size: 30
77555089 ATTTTTAGAC
77555099 CTAGGGGTAAAATGGTTATTTTGTAAAATT
1 CTAGGGGTAAAATGGTTATTTTGTAAAATT
77555129 CTAGGGGTAAAATGGTTATTTTGTAAAATT
1 CTAGGGGTAAAATGGTTATTTTGTAAAATT
*
77555159 CTAGGGGCAAAATGGT
1 CTAGGGGTAAAATGGT
77555175 CATTATGCCC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (30 bp):
CTAGGGGTAAAATGGTTATTTTGTAAAATT
Found at i:77555639 original size:46 final size:46
Alignment explanation
Indices: 77555532--77555662 Score: 174
Period size: 46 Copynumber: 2.8 Consensus size: 46
77555522 CAGCCACATT
*
77555532 ACGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAG
1 ACGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAG
* *
77555580 ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAG
1 ACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAG
* * *
77555626 ATGTA-AGCCAGTGTAAGACATGTTTGGGACATTCATC
1 ACG-AGAGCCAGTGTAAGACATGTCTGGGACATGCATC
77555663 GACTACGAGT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 43 0.57
47 15 0.20
48 17 0.23
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
ACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAG
Done.