Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 262 of 328
Found at i:78205726 original size:40 final size:40
Alignment explanation
Indices: 78205682--78205935 Score: 483
Period size: 40 Copynumber: 6.4 Consensus size: 40
78205672 CCTTTGAGGT
* *
78205682 TTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
78205722 TTAGCCC-GATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
78205761 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
78205801 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
78205841 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
78205881 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
78205921 TTAGCCCGGATACAT
1 TTAGCCCGGATACAT
78205936 TCGAATAATC
Statistics
Matches: 211, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
39 37 0.18
40 174 0.82
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGAC
Found at i:78207704 original size:46 final size:46
Alignment explanation
Indices: 78207635--78207725 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
78207625 TATATATACA
* * *
78207635 CATCTCATACATATCTCATATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* *
78207681 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
78207726 ATATACACTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:78207772 original size:22 final size:22
Alignment explanation
Indices: 78207744--78207865 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
78207734 TTCCACGTTC
78207744 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
78207766 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
78207791 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
78207813 ATCACATATGTG-CATGT-T-CACATTT
1 ATCACAT-TG-GCCAT-TCTGC-C--TT
*
78207838 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
78207860 ATCACA
1 ATCACA
78207866 CATATGTGCA
Statistics
Matches: 77, Mismatches: 5, Indels: 36
0.65 0.04 0.31
Matches are distributed among these distances:
22 26 0.34
23 16 0.21
24 15 0.19
25 20 0.26
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:78207776 original size:49 final size:48
Alignment explanation
Indices: 78207699--78207941 Score: 323
Period size: 47 Copynumber: 5.1 Consensus size: 48
78207689 ACACATTTCG
* * * * * *
78207699 CATTAGCCATTCGGCTTTACCACATATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACA-ATATATGCA-TGTTCACATTCATCA
* *
78207748 CATTGGCCATTCTGCCTTATCAC-ATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
* *
78207795 CATTGGCCATTCGGCCTTATCAC-ATATGTGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
*
78207842 CATTGGCCATTCGGCCTTATCACACATATGTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACA-ATATATGCATGTTCACATTCATCA
*
78207891 CATTGGCCATTCGGCCTTATCAC-ACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
78207938 CATT
1 CATT
78207942 TGCCTTGGCT
Statistics
Matches: 178, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 112 0.63
49 65 0.37
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (48 bp):
CATTGGCCATTCGGCCTTATCACAATATATGCATGTTCACATTCATCA
Found at i:78207797 original size:47 final size:47
Alignment explanation
Indices: 78207741--78207941 Score: 330
Period size: 47 Copynumber: 4.2 Consensus size: 47
78207731 CACTTCCACG
*
78207741 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
78207788 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
78207835 TTTATCACATTGGCCATTCGGCCTTATCACACATATGTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAT--CACATATATGCATGTTCACA
*
78207884 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
78207931 TTCATCACATT
1 TTCATCACATT
78207942 TGCCTTGGCT
Statistics
Matches: 146, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
47 100 0.68
49 46 0.32
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:78207805 original size:96 final size:96
Alignment explanation
Indices: 78207699--78207941 Score: 305
Period size: 96 Copynumber: 2.5 Consensus size: 96
78207689 ACACATTTCG
* * * * *
78207699 CATTAGCCATTCGGCTTTACCACATATATATACACT-TCCACGTTCATCACATTGGCCATTCTGC
1 CATTGGCCATTCGGCCTTATCACA-ATATATACA-TGTCCACATTCATCACATTGGCCATTCGGC
*
78207763 CTTAT-CACATATATGCATGTTCACATTTATCA
64 CTTATACACATATATGCATGTTCACATTCATCA
* * * *
78207795 CATTGGCCATTCGGCCTTATCAC-ATATGTGCATGTTCACATTTATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACAATATATACATGTCCACATTCATCACATTGGCCATTCGGCCT
*
78207859 TATCACACATATGTGCATGTTCACATTCATCA
66 TAT-ACACATATATGCATGTTCACATTCATCA
* * *
78207891 CATTGGCCATTCGGCCTTATCAC-ACATATGCATGTTCACATTCATCACATT
1 CATTGGCCATTCGGCCTTATCACAATATATACATGTCCACATTCATCACATT
78207942 TGCCTTGGCT
Statistics
Matches: 130, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
93 1 0.01
94 36 0.28
96 93 0.72
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (96 bp):
CATTGGCCATTCGGCCTTATCACAATATATACATGTCCACATTCATCACATTGGCCATTCGGCCT
TATACACATATATGCATGTTCACATTCATCA
Found at i:78213171 original size:68 final size:67
Alignment explanation
Indices: 78213099--78213248 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
78213089 CATCATGTGT
* * * *
78213099 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
78213161 ATGTAG
62 ATGTAG
** * *
78213167 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
78213232 AG
66 AG
78213234 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
78213249 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:78213204 original size:64 final size:64
Alignment explanation
Indices: 78213123--78213306 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
78213113 AGACATTATG
* *
78213123 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
78213187 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
78213252 AA
63 AA
* * * *
78213254 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
78213307 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:78216304 original size:50 final size:50
Alignment explanation
Indices: 78216244--78216343 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
78216234 TTCAACCTAA
*
78216244 AACACATGGAAACCCTAGGAGAGAGAAAATAAACTTTCAAGGCCTAATTG
1 AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
78216294 AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
1 AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
78216344 GGTAAGTTCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (50 bp):
AACACATGGAAACCCTAGGAGAGAGAAAAGAAACTTTCAAGGCCTAATTG
Found at i:78217489 original size:19 final size:19
Alignment explanation
Indices: 78217448--78217489 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
78217438 TTCAACGGAC
**
78217448 ATGAAAATCTTGACATGGC
1 ATGAAAATCTTGACATGAA
*
78217467 ATGAAAATCTTGAGATGAA
1 ATGAAAATCTTGACATGAA
78217486 ATGA
1 ATGA
78217490 TAATGACTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (19 bp):
ATGAAAATCTTGACATGAA
Found at i:78224087 original size:39 final size:39
Alignment explanation
Indices: 78224033--78224118 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
78224023 TGGTAGAAAC
*
78224033 TTTC-ATTAGGCATCATTTTAAAGTGGAAGCTTTTTAGT
1 TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
78224071 TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
1 TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
78224110 TTTCAATTA
1 TTTCAATTA
78224119 TTGTTTTATA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 4 0.09
39 42 0.91
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.45
Consensus pattern (39 bp):
TTTCAATTAGGAATCATTTTAAAGTGGAAGCTTTTTAGT
Found at i:78227588 original size:29 final size:29
Alignment explanation
Indices: 78227556--78227628 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
78227546 TGGCTGATCT
* *
78227556 GGCCAAATTCATATTCTTATGGCCCACTA
1 GGCCAAATTCATATTCATACGGCCCACTA
* *
78227585 GGCCAAATTC-TCATTCATACGGCCTATTA
1 GGCCAAATTCAT-ATTCATACGGCCCACTA
78227614 GGCCCAAA-TCATATT
1 GG-CCAAATTCATATT
78227629 ATATTCATGC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
28 1 0.03
29 30 0.81
30 6 0.16
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
GGCCAAATTCATATTCATACGGCCCACTA
Found at i:78232072 original size:29 final size:29
Alignment explanation
Indices: 78232006--78232124 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
78231996 TACATACATG
* *
78232006 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
78232034 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * * *
78232063 CTTATGGCCCACTAGGCCAAATTCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
*
78232092 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
78232121 -ATAT
1 CATAT
78232125 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
28 21 0.29
29 52 0.71
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:78232101 original size:58 final size:57
Alignment explanation
Indices: 78232008--78232120 Score: 172
Period size: 58 Copynumber: 2.0 Consensus size: 57
78231998 CATACATGCA
* * **
78232008 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCAAATCTTATTCAAATGGCCCATTAGGCCCAAATCATATTCT
*
78232065 TATGGCCCACTAGGCCAAATTCTTATTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCAAA-TCTTATTCAAATGGCCCATTAGGCCCAAATCATATT
78232121 ATATTCATGC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 18 0.36
58 32 0.64
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCAAATCTTATTCAAATGGCCCATTAGGCCCAAATCATATTCT
Found at i:78242154 original size:23 final size:22
Alignment explanation
Indices: 78242131--78242174 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
78242121 TTTCCCTTGA
78242131 AACA-AGGTCACACGCCCGTGTG
1 AACATAGG-CACACGCCCGTGTG
*
78242153 AACATAGGGACACGCCCGTGTG
1 AACATAGGCACACGCCCGTGTG
78242175 CCTTTGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.27, C:0.30, G:0.30, T:0.14
Consensus pattern (22 bp):
AACATAGGCACACGCCCGTGTG
Found at i:78249886 original size:33 final size:33
Alignment explanation
Indices: 78249844--78249908 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
78249834 AAGCTTTGTA
78249844 TGTTATGCATATGAAACAGGTGAGGAAAGGTAT
1 TGTTATGCATATGAAACAGGTGAGGAAAGGTAT
78249877 TGTTATGCATATGAAACAGGTGAGGAAAGGTA
1 TGTTATGCATATGAAACAGGTGAGGAAAGGTA
78249909 ATGGTAAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.37, C:0.06, G:0.31, T:0.26
Consensus pattern (33 bp):
TGTTATGCATATGAAACAGGTGAGGAAAGGTAT
Found at i:78252047 original size:46 final size:46
Alignment explanation
Indices: 78251980--78252108 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
78251970 TGTAACCCTC
* * * *
78251980 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78252026 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78252072 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78252109 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78252127 original size:46 final size:46
Alignment explanation
Indices: 78251988--78252127 Score: 128
Period size: 46 Copynumber: 3.0 Consensus size: 46
78251978 TCCCATAAGC
* *
78251988 GAACTCGGACTCAACTCAACGAGCTCGG--GCT-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCATC-CATCC-T-AGT
* * * * *
78252034 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCTAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCG--GATGCTCATCCATCCTAGT
*
78252080 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCTAGT
78252126 GA
1 GA
78252128 CATGTCACTT
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
44 8 0.11
46 61 0.82
50 3 0.04
51 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCTAGT
Found at i:78257366 original size:3 final size:3
Alignment explanation
Indices: 78257358--78257425 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
78257348 AATTCGGATG
78257358 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
78257406 TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
78257426 TCGTATGTTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:78262454 original size:20 final size:22
Alignment explanation
Indices: 78262425--78262464 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
78262415 ATTGATTTAT
*
78262425 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
78262445 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
78262465 CGTATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:78264525 original size:20 final size:20
Alignment explanation
Indices: 78264500--78264558 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
78264490 TAAATATGGT
78264500 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
78264520 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
78264540 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
78264559 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:78264636 original size:24 final size:24
Alignment explanation
Indices: 78264609--78264728 Score: 163
Period size: 24 Copynumber: 5.0 Consensus size: 24
78264599 GAGGAAGTGA
78264609 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
78264633 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
78264657 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
78264681 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATC
*
78264705 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
78264729 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
23 1 0.01
24 76 0.86
25 11 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:78264955 original size:31 final size:31
Alignment explanation
Indices: 78264920--78264983 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
78264910 CGTTTACCGT
*
78264920 AAAGGCTTCGGCCCAGTAATATGAGATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
78264951 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
78264982 AA
1 AA
78264984 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:78271366 original size:45 final size:46
Alignment explanation
Indices: 78271301--78271397 Score: 178
Period size: 45 Copynumber: 2.1 Consensus size: 46
78271291 ATAAGACTTA
78271301 AATTATGTTAAATACACTTAATCATGGGAACCAAGAGTGTTAGTAG
1 AATTATGTTAAATACACTTAATCATGGGAACCAAGAGTGTTAGTAG
*
78271347 AATTAT-TTAAATACACTTAATCTTGGGAACCAAGAGTGTTAGTAG
1 AATTATGTTAAATACACTTAATCATGGGAACCAAGAGTGTTAGTAG
78271392 AATTAT
1 AATTAT
78271398 CATATTTTTC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 44 0.88
46 6 0.12
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (46 bp):
AATTATGTTAAATACACTTAATCATGGGAACCAAGAGTGTTAGTAG
Found at i:78274450 original size:32 final size:32
Alignment explanation
Indices: 78274414--78274478 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
78274404 TGTATGCATT
78274414 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
78274446 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
78274478 T
1 T
78274479 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:78275964 original size:26 final size:26
Alignment explanation
Indices: 78275935--78275987 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
78275925 TTTACAGTTT
78275935 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
78275961 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
78275987 T
1 T
78275988 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:78281886 original size:32 final size:32
Alignment explanation
Indices: 78281850--78281914 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
78281840 TGTATGCATT
78281850 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
78281882 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
78281914 T
1 T
78281915 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:78283372 original size:26 final size:26
Alignment explanation
Indices: 78283342--78283394 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
78283332 TTTATAGTTT
78283342 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
78283368 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
78283394 T
1 T
78283395 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:78287833 original size:21 final size:22
Alignment explanation
Indices: 78287783--78287833 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
78287773 TGCAGGGCTC
**
78287783 ACACGCCCGTGTGGTCTAAGGG
1 ACACGCCCGTGTGACCTAAGGG
* *
78287805 ACAAGCCCGTGTGACCTTA-GG
1 ACACGCCCGTGTGACCTAAGGG
78287826 ACACGCCC
1 ACACGCCC
78287834 ATGCTGCAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (22 bp):
ACACGCCCGTGTGACCTAAGGG
Found at i:78289412 original size:71 final size:71
Alignment explanation
Indices: 78289326--78289489 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78289316 CGATTTGTCT
78289326 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78289391 CTTTCA
66 CTTTCA
78289397 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78289462 CTTTCA
66 CTTTCA
78289468 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78289490 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78289527 original size:71 final size:70
Alignment explanation
Indices: 78289326--78289523 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78289316 CGATTTGTCT
* * * *
78289326 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78289391 CTTTCA
65 CTTTCA
* * * *
78289397 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78289462 CTTTCA
65 CTTTCA
* *
78289468 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78289524 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78296990 original size:71 final size:71
Alignment explanation
Indices: 78296904--78297067 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78296894 CGATTTGTCT
78296904 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78296969 CTTTCA
66 CTTTCA
78296975 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78297040 CTTTCA
66 CTTTCA
78297046 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78297068 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78297105 original size:71 final size:70
Alignment explanation
Indices: 78296904--78297101 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78296894 CGATTTGTCT
* * * *
78296904 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78296969 CTTTCA
65 CTTTCA
* * * *
78296975 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78297040 CTTTCA
65 CTTTCA
* *
78297046 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78297102 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78304497 original size:40 final size:40
Alignment explanation
Indices: 78304413--78304597 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
78304403 TCGAATGATG
* *
78304413 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
78304452 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
78304493 TCCGGGCTAAG-CCCGAAGGTATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
78304532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
78304571 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
78304598 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:78304549 original size:79 final size:80
Alignment explanation
Indices: 78304413--78304597 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
78304403 TCGAATGATG
* *
78304413 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
*
78304478 GTGCTAGTTACTA-A
66 GTGCGAGTTACTATA
* **
78304492 TTCCGGGCTAAG-CCCGAAGG-TATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCT-TT-GTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGC
*
78304553 ATTTGTGCGAGTTGCTATA
62 ATTTGTGCGAGTTACTATA
* *
78304572 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
78304598 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 14
0.79 0.08 0.12
Matches are distributed among these distances:
78 2 0.02
79 59 0.66
80 25 0.28
81 2 0.02
82 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:78304604 original size:40 final size:40
Alignment explanation
Indices: 78304494--78304611 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 40
78304484 GTTACTAATT
* * **
78304494 CCGGGCTAAG-CCCGAAGGTATTGGTGCGAGTCA-CTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGT-AGCTATAA
* ** *
78304532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
*
78304573 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATA
78304612 TCGGTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
39 9 0.13
40 56 0.84
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
Found at i:78312239 original size:28 final size:28
Alignment explanation
Indices: 78312207--78312326 Score: 159
Period size: 28 Copynumber: 4.2 Consensus size: 28
78312197 ATTGCATGAC
78312207 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
78312235 TATGAAAGTGATTGGGCTTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
** *
78312263 TATGAATGTGATTGGGCCCGATTGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
78312291 TATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
78312320 AATGAAT
1 TATGAAT
78312327 AAGTACGGAT
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 66 0.85
29 12 0.15
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:78312971 original size:23 final size:23
Alignment explanation
Indices: 78312928--78312973 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
78312918 TTATATCCCC
* *
78312928 AGATGGTGTGTATCGGGGGATGG
1 AGATAGTGTGTATCGGCGGATGG
78312951 AGATAGTGTGTAGT-GGCGGATGG
1 AGATAGTGTGTA-TCGGCGGATGG
78312974 GTGGGATCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.20, C:0.04, G:0.50, T:0.26
Consensus pattern (23 bp):
AGATAGTGTGTATCGGCGGATGG
Found at i:78313589 original size:17 final size:18
Alignment explanation
Indices: 78313556--78313589 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78313546 TTTAAAGAAG
78313556 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
78313574 GGTTTTCTAT-AAAACA
1 GGTTTTCAATGAAAACA
78313590 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:78313850 original size:24 final size:25
Alignment explanation
Indices: 78313823--78313902 Score: 78
Period size: 24 Copynumber: 3.3 Consensus size: 25
78313813 TACCGATGTA
*
78313823 TCAGCTTGTAAGAGCCTT-TTGTTC
1 TCAGCTTGTAAGAGCCTTACTGTTC
** *
78313847 TCAGCTCATAAAAG-CTTACTGTTC
1 TCAGCTTGTAAGAGCCTTACTGTTC
*
78313871 TCAGCTTGTCAGAG-CTTACTGTT-
1 TCAGCTTGTAAGAGCCTTACTGTTC
78313894 TCCAGCTTG
1 T-CAGCTTG
78313903 ATACAACTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
23 4 0.09
24 42 0.91
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (25 bp):
TCAGCTTGTAAGAGCCTTACTGTTC
Found at i:78313900 original size:48 final size:49
Alignment explanation
Indices: 78313822--78313925 Score: 117
Period size: 48 Copynumber: 2.1 Consensus size: 49
78313812 TTACCGATGT
*
78313822 ATCAGCTTGTAAGAGCCTTTTGTTCTCAGC-TCATAAAAGCTTACTGTTC
1 ATCAGCTTGTAAGAGCCTTCTGTTCTCAGCTTCATAAAA-CTTACTGTTC
* * *
78313871 -TCAGCTTGTCAGAG-CTTACTGTT-TCCAGCTTGATACAACTTACTGTTC
1 ATCAGCTTGTAAGAGCCTT-CTGTTCT-CAGCTTCATAAAACTTACTGTTC
78313919 ATCAGCT
1 ATCAGCT
78313926 CAGGAGGAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
47 4 0.09
48 31 0.66
49 12 0.26
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (49 bp):
ATCAGCTTGTAAGAGCCTTCTGTTCTCAGCTTCATAAAACTTACTGTTC
Found at i:78318758 original size:6 final size:6
Alignment explanation
Indices: 78318740--78318827 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
78318730 AAGAAACATT
*
78318740 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
78318789 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATTAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
78318828 GTGAAACCCA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 5 0.07
6 52 0.78
7 7 0.10
8 3 0.04
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:78318761 original size:18 final size:18
Alignment explanation
Indices: 78318740--78318827 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
78318730 AAGAAACATT
78318740 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
78318758 ATCAGAATCAGAATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
78318778 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
*
78318795 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
78318814 ATCAAAATTAGAAT
1 ATCAGAATCAGAAT
78318828 GTGAAACCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 4 0.07
18 23 0.40
19 26 0.46
20 4 0.07
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:78318784 original size:31 final size:31
Alignment explanation
Indices: 78318749--78318827 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
78318739 TATCAGAACT
*
78318749 AGAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
78318780 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
78318811 AGAATCAAAATTAGAAT
1 AGAATCAAAATCAGAAT
78318828 GTGAAACCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:78319002 original size:27 final size:27
Alignment explanation
Indices: 78318954--78319028 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
78318944 GCTCAATTAC
* * * *
78318954 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGAAA
*
78318981 CAGATATTGTGGCATAGCCACCAGAAA
1 CAGATATTGTGGCAAAGCCACCAGAAA
* *
78319008 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
78319029 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGAAA
Found at i:78319221 original size:22 final size:22
Alignment explanation
Indices: 78319187--78319251 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
78319177 GCAAATACAT
* *
78319187 TTGGTACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
78319209 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
78319231 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
78319252 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:78321407 original size:28 final size:29
Alignment explanation
Indices: 78321375--78321444 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 29
78321365 GCGTAGATCA
78321375 CGAAATTACCCCTAAAGAGC-AAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAAATTAC
*
78321403 CGAAATTACCCCTACAGAGCAAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAAATTAC
*
78321432 CGATA-TACCCCTA
1 CGAAATTACCCCTA
78321445 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 27 0.69
29 12 0.31
ACGTcount: A:0.43, C:0.29, G:0.10, T:0.19
Consensus pattern (29 bp):
CGAAATTACCCCTAAAGAGCAAAAATTAC
Found at i:78322682 original size:27 final size:27
Alignment explanation
Indices: 78322599--78322847 Score: 297
Period size: 27 Copynumber: 9.3 Consensus size: 27
78322589 GGGGCAAAAT
* * * *
78322599 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
78322625 GGTAATTCCACCCTACA-GGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
78322651 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
78322678 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
78322705 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
78322732 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
78322759 GGTAATTCTACCCTACAGGGGTATTTTT
1 GGTAATTCTACCCTACAGGGGTA-TTTC
* * * *
78322787 GGTAGTTCTGCCTTACAGGGGTAGTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
78322814 AGTAATTCTA-CAAACCAGGGGTATTTT
1 GGTAATTCTACCCTA-CAGGGGTATTTC
78322841 GGTAATT
1 GGTAATT
78322848 TGGTAAACTA
Statistics
Matches: 192, Mismatches: 28, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
26 36 0.19
27 133 0.69
28 23 0.12
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:78324473 original size:16 final size:16
Alignment explanation
Indices: 78324452--78324495 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
78324442 AATGAATCAG
78324452 TAAAAGCCAAAATGCC
1 TAAAAGCCAAAATGCC
* *
78324468 TAAAAGCCGAAATGTC
1 TAAAAGCCAAAATGCC
*
78324484 GAAAAGCCAAAA
1 TAAAAGCCAAAA
78324496 GTTGGGCTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.52, C:0.20, G:0.16, T:0.11
Consensus pattern (16 bp):
TAAAAGCCAAAATGCC
Found at i:78324760 original size:29 final size:28
Alignment explanation
Indices: 78324706--78324823 Score: 105
Period size: 28 Copynumber: 4.2 Consensus size: 28
78324696 GTGAGCATGA
* * *
78324706 ATAT-AATATGATTTGGGCCCAATGGGCC
1 ATATGAATATGAATT-GGCCTAGTGGGCC
*
78324734 ATATGAATTTGAATTAGGCCTAGTGGGCC
1 ATATGAATATGAATT-GGCCTAGTGGGCC
* * * *
78324763 ATAAGAATATGAACTGGGCTAGTAGGCC
1 ATATGAATATGAATTGGCCTAGTGGGCC
* *
78324791 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATT-GGCCTAGTGGGCC
78324819 ATATG
1 ATATG
78324824 CATGTATGTA
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
27 2 0.03
28 38 0.54
29 31 0.44
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATGAATATGAATTGGCCTAGTGGGCC
Found at i:78327922 original size:17 final size:17
Alignment explanation
Indices: 78327900--78327959 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
78327890 TAAGGGTTAA
78327900 TCATGGAGGTAGGCTTT
1 TCATGGAGGTAGGCTTT
* *
78327917 TCATGGCATGAGT-GGGTTAA
1 TCATGG-A-G-GTAGGCTT-T
78327937 TCATGGAGGTAGGCTTT
1 TCATGGAGGTAGGCTTT
78327954 TCATGG
1 TCATGG
78327960 CATGAGTGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 14 0.41
18 6 0.18
19 6 0.18
20 8 0.24
ACGTcount: A:0.20, C:0.12, G:0.35, T:0.33
Consensus pattern (17 bp):
TCATGGAGGTAGGCTTT
Found at i:78327935 original size:37 final size:37
Alignment explanation
Indices: 78327893--78327975 Score: 166
Period size: 37 Copynumber: 2.2 Consensus size: 37
78327883 GGTTCACTAA
78327893 GGGTTAATCATGGAGGTAGGCTTTTCATGGCATGAGT
1 GGGTTAATCATGGAGGTAGGCTTTTCATGGCATGAGT
78327930 GGGTTAATCATGGAGGTAGGCTTTTCATGGCATGAGT
1 GGGTTAATCATGGAGGTAGGCTTTTCATGGCATGAGT
78327967 GGGTTAATC
1 GGGTTAATC
78327976 CTAAGTGCCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.22, C:0.11, G:0.35, T:0.33
Consensus pattern (37 bp):
GGGTTAATCATGGAGGTAGGCTTTTCATGGCATGAGT
Found at i:78327942 original size:20 final size:20
Alignment explanation
Indices: 78327917--78327975 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
78327907 GGTAGGCTTT
78327917 TCATGGCATGAGTGGGTTAA
1 TCATGGCATGAGTGGGTTAA
* *
78327937 TCATGG-A-G-GTAGGCTT-T
1 TCATGGCATGAGT-GGGTTAA
78327954 TCATGGCATGAGTGGGTTAA
1 TCATGGCATGAGTGGGTTAA
78327974 TC
1 TC
78327976 CTAAGTGCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
17 8 0.27
18 6 0.20
19 6 0.20
20 10 0.33
ACGTcount: A:0.22, C:0.12, G:0.34, T:0.32
Consensus pattern (20 bp):
TCATGGCATGAGTGGGTTAA
Found at i:78328356 original size:22 final size:22
Alignment explanation
Indices: 78328330--78328373 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
78328320 TCAATCAAAA
78328330 TCATAAATCAATCAAAATTTAT
1 TCATAAATCAATCAAAATTTAT
78328352 TCATAAATCAATCAAAATTTAT
1 TCATAAATCAATCAAAATTTAT
78328374 CCTAAATATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (22 bp):
TCATAAATCAATCAAAATTTAT
Found at i:78335375 original size:40 final size:39
Alignment explanation
Indices: 78335330--78335537 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
78335320 CGGAATACAA
*
78335330 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78335370 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78335410 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
78335450 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
78335490 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
78335530 CCGGATAT
1 CCGGATAT
78335538 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:78335470 original size:80 final size:80
Alignment explanation
Indices: 78335330--78335536 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
78335320 CGGAATACAA
* * *
78335330 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
78335394 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
78335410 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
78335474 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
78335490 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
78335537 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:78343425 original size:40 final size:39
Alignment explanation
Indices: 78343380--78343587 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
78343370 CGGAATACAA
*
78343380 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78343420 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78343460 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
78343500 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
78343540 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
78343580 CCGGATAT
1 CCGGATAT
78343588 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:78343520 original size:80 final size:80
Alignment explanation
Indices: 78343380--78343586 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
78343370 CGGAATACAA
* * *
78343380 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
78343444 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
78343460 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
78343524 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
78343540 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
78343587 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:78347765 original size:25 final size:25
Alignment explanation
Indices: 78347710--78347796 Score: 72
Period size: 25 Copynumber: 3.5 Consensus size: 25
78347700 CATCTCATGA
78347710 GAGCTTACCGAT-TCTCAGCTC-ATATG
1 GAGCTTACCGATAT-TCAGCTCGA-A-G
*
78347736 G-GCTTACCGATATTCAGCTCGCAG
1 GAGCTTACCGATATTCAGCTCGAAG
* * * *
78347760 GAGCTTACTGTTACTCAGCTCGAAA
1 GAGCTTACCGATATTCAGCTCGAAG
*
78347785 GAGCTTATCGAT
1 GAGCTTACCGAT
78347797 TACAACTCGT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
24 2 0.04
25 45 0.92
26 2 0.04
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (25 bp):
GAGCTTACCGATATTCAGCTCGAAG
Found at i:78349215 original size:54 final size:54
Alignment explanation
Indices: 78349193--78349296 Score: 172
Period size: 54 Copynumber: 1.9 Consensus size: 54
78349183 ACAAAACTAT
*
78349193 TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATAC
1 TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATAC
* * *
78349247 TGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAA
1 TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAA
78349297 TTACCATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATAC
Found at i:78349224 original size:27 final size:27
Alignment explanation
Indices: 78349194--78349301 Score: 153
Period size: 27 Copynumber: 4.0 Consensus size: 27
78349184 CAAAACTATT
*
78349194 GAAATACCCATGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
78349221 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCTTGTAGGGTAGAATTACC
*
78349248 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
78349275 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
78349302 ATTTTGCCCC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:78349533 original size:27 final size:26
Alignment explanation
Indices: 78349495--78349581 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
78349485 TGGAGGAAGC
78349495 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* *
78349522 GTTCTGGTGGCTTTGCCACAATATTT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
78349548 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
*
78349575 GTCCTGG
1 GTTCTGG
78349582 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.23
27 40 0.77
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:78351571 original size:42 final size:41
Alignment explanation
Indices: 78351519--78351711 Score: 197
Period size: 42 Copynumber: 4.5 Consensus size: 41
78351509 AGGGTTACTA
* *
78351519 AGACTATGTGTAAAAACATATCTGGGATATGACATCTATATG
1 AGACTTTGTGTAAGAACATATCTGGGATATGACAT-TATATG
* *
78351561 AGACTTTGTGTAAGACCATATCTGGGATCATGACATTAGGGTCACTA
1 AGACTTTGTGTAAGAACATATCTGGGAT-ATGACATTA---T-A-TG
* *
78351608 AGACTATGTGTAAGAACATATCTGAGATATGACATCTATATG
1 AGACTTTGTGTAAGAACATATCTGGGATATGACAT-TATATG
* * * *
78351650 AGACTTTGTGTAAGACCGTATCTGGGATATGGCATTGATAAG
1 AGACTTTGTGTAAGAACATATCTGGGATATGACATT-ATATG
* *
78351692 AGACTTCGTGTAAGACCATA
1 AGACTTTGTGTAAGAACATA
78351712 GTTGGGCTAT
Statistics
Matches: 127, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 80 0.63
43 8 0.06
44 1 0.01
45 1 0.01
46 8 0.06
47 28 0.22
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (41 bp):
AGACTTTGTGTAAGAACATATCTGGGATATGACATTATATG
Found at i:78351653 original size:89 final size:88
Alignment explanation
Indices: 78351502--78351685 Score: 314
Period size: 89 Copynumber: 2.1 Consensus size: 88
78351492 ACAAATGTCG
* *
78351502 TGACATTAGGGTTACTAAGACTATGTGTAAAAACATATCTGGGATATGACATCTATATGAGACTT
1 TGACATTAGGGTCACTAAGACTATGTGTAAAAACATATCTGAGATATGACATCTATATGAGACTT
78351567 TGTGTAAGACCATATCTGGGATCA
66 TGTGTAAGACCATATCTGGGAT-A
*
78351591 TGACATTAGGGTCACTAAGACTATGTGTAAGAACATATCTGAGATATGACATCTATATGAGACTT
1 TGACATTAGGGTCACTAAGACTATGTGTAAAAACATATCTGAGATATGACATCTATATGAGACTT
*
78351656 TGTGTAAGACCGTATCTGGGATA
66 TGTGTAAGACCATATCTGGGATA
*
78351679 TGGCATT
1 TGACATT
78351686 GATAAGAGAC
Statistics
Matches: 90, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
88 7 0.08
89 83 0.92
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (88 bp):
TGACATTAGGGTCACTAAGACTATGTGTAAAAACATATCTGAGATATGACATCTATATGAGACTT
TGTGTAAGACCATATCTGGGATA
Found at i:78362153 original size:40 final size:40
Alignment explanation
Indices: 78362094--78362340 Score: 284
Period size: 40 Copynumber: 6.2 Consensus size: 40
78362084 CAGAATACGA
* * *
78362094 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
* *
78362134 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
** * *
78362174 CCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
* *
78362214 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
** * *
78362254 CCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
78362294 CCGGAT-GTA-GTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATAGAACG--ACTTGCACGAA-TGCCTTCGGGTCTTAGC
78362334 CCGGATA
1 CCGGATA
78362341 TAATTACCAG
Statistics
Matches: 175, Mismatches: 28, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 172 0.98
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:78362227 original size:80 final size:80
Alignment explanation
Indices: 78362110--78362380 Score: 386
Period size: 80 Copynumber: 3.4 Consensus size: 80
78362100 ATAACCACAT
78362110 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCC
78362175 CGGATTTAACAACTC
66 CGGATTTAACAACTC
78362190 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCC
78362255 CGGATTTAACAACTC
66 CGGATTTAACAACTC
* * * * *
78362270 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAATTGCCTTCGGGTCTTAA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTTGCACAAATGCCTTCGGGTATTAG
* **
78362333 CCCGGATATAATTAC-C
64 CCCGGATTTAACAACTC
** * *
78362349 AGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 -GCACGAATGCCTTCGGGTCTTAGCCCGGATA
78362381 TCATTCAATT
Statistics
Matches: 175, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 3 0.02
80 171 0.98
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCC
CGGATTTAACAACTC
Found at i:78362321 original size:120 final size:120
Alignment explanation
Indices: 78362094--78362380 Score: 330
Period size: 120 Copynumber: 2.4 Consensus size: 120
78362084 CAGAATACGA
* * * * *
78362094 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATAGAACCACATGCACAAATGCCTTCGGGTATTAGCCCGGATAGAACAACTCGCACAAATG
* * *
78362159 CCTTCGGGTATTAGCCCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTATTAGCCCGGATGTAACAACTAGCACGAATGCCTTCGGGTCTTAAC
* * ** *
78362214 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCCGGATTTAACAACTCGCACGAATG
1 CCGGATAGAACCACATGCACAAATGCCTTCGGGTATTAGCCCGGATAGAACAACTCGCACAAATG
* *
78362279 CCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
66 CCTTCGGGTATTAGCCCGGATGTA-ACAACTAGCACGAA-TGCCTTCGGGTCTTAAC
* ** * *
78362334 CCGGATATAATTACCA-GCATAAATGTCTTCGGG-ACTTAGCCCGGATA
1 CCGGATAGAACCA-CATGCACAAATGCCTTCGGGTA-TTAGCCCGGATA
78362381 TCATTCAATT
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
119 3 0.02
120 136 0.96
121 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (120 bp):
CCGGATAGAACCACATGCACAAATGCCTTCGGGTATTAGCCCGGATAGAACAACTCGCACAAATG
CCTTCGGGTATTAGCCCGGATGTAACAACTAGCACGAATGCCTTCGGGTCTTAAC
Found at i:78362364 original size:40 final size:39
Alignment explanation
Indices: 78362094--78362381 Score: 272
Period size: 40 Copynumber: 7.2 Consensus size: 39
78362084 CAGAATACGA
* * *
78362094 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-CGCACAAATGCCTTCGGGTCTTAGC
* * * *
78362134 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAAC-CGCACAAATGCCTTCGGGTCTTAGC
* *
78362174 CCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-CGCACAAATGCCTTCGGGTCTTAGC
* * * *
78362214 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAAC-CGCACAAATGCCTTCGGGTCTTAGC
* *
78362254 CCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-CGCACAAATGCCTTCGGGTCTTAGC
* * * * *
78362294 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAAC-CGCACAAATGCCTTCGGGTCTTAGC
** * * *
78362334 CCGGATATAATTACCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACC-GCACAAATGCCTTCGGGTCTTAGC
78362374 CCGGATAT
1 CCGGATAT
78362382 CATTCAATTG
Statistics
Matches: 207, Mismatches: 38, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
40 206 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACCGCACAAATGCCTTCGGGTCTTAGC
Found at i:78370230 original size:40 final size:39
Alignment explanation
Indices: 78370185--78370391 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
78370175 CGGAATACAA
*
78370185 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78370225 CCGGATAGAACGACTTGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
78370264 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
78370304 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
78370344 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
78370384 CCGGATAT
1 CCGGATAT
78370392 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 35 0.25
40 105 0.75
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:78370303 original size:79 final size:80
Alignment explanation
Indices: 78370185--78370390 Score: 238
Period size: 79 Copynumber: 2.6 Consensus size: 80
78370175 CGGAATACAA
* * *
78370185 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-CGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGC-ACTAGCACAAAT
*
78370249 GCCTTC-GGTATTAGC
65 GCCTTCGGGTATTAAC
* * *
78370264 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTAGCACAAAT
*
78370328 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
78370344 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
78370391 TCATTCAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.55
80 46 0.43
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:78374674 original size:40 final size:40
Alignment explanation
Indices: 78374630--78374814 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
78374620 GGGCTAAGTC
* * *
78374630 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAACAT
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAACAT
* *
78374670 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAACAT
*
78374710 CCGAAGGCATTTGTGCGAGTTACAAAATCCGGACTAACAT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAACAT
** *
78374750 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAA-GT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAACAT
* *
78374789 CCCGAAGGCATTTGTGCTAGCTACTA
1 -CCGAAGGCATTTGTGCGAGTTACTA
78374815 TAACCGGGCT
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 121 0.94
41 7 0.05
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAACAT
Found at i:78374822 original size:40 final size:39
Alignment explanation
Indices: 78374617--78374842 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 39
78374607 TCGAATGATG
* * * *
78374617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
78374657 TCCGGACTAACATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAA-GTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78374697 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACAAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
78374737 TCCGGACTAACATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAA-GTCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
78374777 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGCTACTATAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
78374818 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
78374843 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 150 0.93
41 10 0.06
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78374849 original size:80 final size:79
Alignment explanation
Indices: 78374617--78374821 Score: 281
Period size: 80 Copynumber: 2.6 Consensus size: 79
78374607 TCGAATGATG
*
78374617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAACATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGT-ACTATAACCGGACTAACATCCGAAGGCATT
78374681 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
* * * *
78374697 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC-AAAATCCGGACTAACATCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TACTATAA-CCGGACTAACATCCGAAGGCAT
78374760 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
*
78374777 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGCTACTATAACCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TACTATAACCGG
78374822 GCTATGTCCC
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
79 3 0.03
80 93 0.86
81 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTACTATAACCGGACTAACATCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:78377538 original size:27 final size:27
Alignment explanation
Indices: 78377498--78377603 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
78377488 AGGAAGCTTC
*
78377498 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
78377525 CTGGTGGCTCTGCCACATATT-T-TTATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
*
78377552 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
78377580 CTGGTGACTCTGTCAC-ATTATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
78377604 TTCTAGCAGC
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
26 5 0.07
27 43 0.63
28 19 0.28
29 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:78378693 original size:11 final size:10
Alignment explanation
Indices: 78378665--78378698 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
78378655 AGCCTATAAG
78378665 TATTCTGAAT
1 TATTCTGAAT
*
78378675 TTTTCTGAAT
1 TATTCTGAAT
78378685 ATATTCTGAAT
1 -TATTCTGAAT
78378696 TAT
1 TAT
78378699 CTATCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:78383303 original size:30 final size:29
Alignment explanation
Indices: 78383209--78383310 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
78383199 TATAGTGAAT
* * *
78383209 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
78383238 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
78383266 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
78383296 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
78383311 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:78390600 original size:30 final size:29
Alignment explanation
Indices: 78390506--78390607 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
78390496 TATAGTGAAT
* * *
78390506 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
78390535 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
78390563 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
78390593 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
78390608 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:78394541 original size:39 final size:40
Alignment explanation
Indices: 78394448--78394556 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 40
78394438 TTCACAATTT
* *
78394448 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
78394488 GCACAATTGCCTTC-GGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
78394527 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
78394557 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.55
40 26 0.45
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:78402545 original size:40 final size:40
Alignment explanation
Indices: 78402501--78402610 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
78402491 TTCACAATTT
* *
78402501 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
78402541 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
78402581 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
78402611 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:78410588 original size:40 final size:40
Alignment explanation
Indices: 78410544--78410653 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
78410534 TTCACAATTT
* *
78410544 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
78410584 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
78410624 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
78410654 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:78414558 original size:71 final size:71
Alignment explanation
Indices: 78414446--78414605 Score: 292
Period size: 71 Copynumber: 2.3 Consensus size: 71
78414436 CGATTTGTCT
78414446 CGTAGCTCTCTTGTCTAC----TGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78414507 CTTTCA
66 CTTTCA
78414513 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78414578 CTTTCA
66 CTTTCA
78414584 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78414606 GATACATCTC
Statistics
Matches: 89, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
67 18 0.20
71 71 0.80
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78414643 original size:71 final size:70
Alignment explanation
Indices: 78414472--78414639 Score: 225
Period size: 71 Copynumber: 2.4 Consensus size: 70
78414462 ACTGTCCTTC
* *
78414472 ACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTG
1 ACTTCGAATCACACATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTG
* *
78414537 TCCTT
66 TACAT
* *
78414542 CACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG-
1 -ACTTCGAATCACACATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGT
78414606 GATACAT
65 G-TACAT
* *
78414613 -C-TCGTATCACACATGTGACCTAGCTAC
1 ACTTCGAATCACACATGCGACCTAGCTAC
78414640 TACAGGGTGT
Statistics
Matches: 90, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
68 22 0.24
69 1 0.01
70 1 0.01
71 66 0.73
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.33
Consensus pattern (70 bp):
ACTTCGAATCACACATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTG
TACAT
Found at i:78422097 original size:71 final size:71
Alignment explanation
Indices: 78422011--78422174 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78422001 CGATTTGTCT
78422011 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78422076 CTTTCA
66 CTTTCA
78422082 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78422147 CTTTCA
66 CTTTCA
78422153 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78422175 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78422212 original size:71 final size:70
Alignment explanation
Indices: 78422011--78422208 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
78422001 CGATTTGTCT
* * * *
78422011 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78422076 CTTTCA
65 CTTTCA
* * * *
78422082 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
78422147 CTTTCA
65 CTTTCA
* *
78422153 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
78422209 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78425946 original size:22 final size:23
Alignment explanation
Indices: 78425921--78425966 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
78425911 CAACCAAACC
78425921 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
78425943 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
78425966 A
1 A
78425967 CGTCATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:78425972 original size:23 final size:22
Alignment explanation
Indices: 78425928--78425977 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
78425918 ACCAATTCAA
*
78425928 CATATTTTCAAGATAAATTCAT
1 CATATTTTCAAGATAAAGTCAT
*
78425950 GCATATTTAT-AAGATAACGTCAT
1 -CATATTT-TCAAGATAAAGTCAT
78425973 CATAT
1 CATAT
78425978 ACCCAAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 18 0.75
24 1 0.04
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (22 bp):
CATATTTTCAAGATAAAGTCAT
Found at i:78429516 original size:26 final size:26
Alignment explanation
Indices: 78429487--78429568 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
78429477 TGATAAAAAT
*
78429487 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78429513 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78429539 TGAAAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78429565 TGAT
1 TGAT
78429569 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78431232 original size:54 final size:54
Alignment explanation
Indices: 78431146--78431307 Score: 238
Period size: 54 Copynumber: 3.0 Consensus size: 54
78431136 TGGAGGAAGC
*
78431146 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
78431200 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * * *
78431254 GTTCTGGTGGCTCTGCCACAA-TATCGGTATCTGGTGACTTTGGCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
78431307 G
1 G
78431308 GTAGCCTCGC
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:78431286 original size:27 final size:27
Alignment explanation
Indices: 78431149--78431307 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
78431139 AGGAAGCGTC
* *
78431149 CTGGTGGCTATGCCACAATTATCT-AAT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
78431176 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
78431203 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
78431230 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
78431257 CTGGTGGCTCTGCCACAATATCGGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* * *
78431284 CTGGTGACTTTGGCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
78431308 GTAGCCTCGC
Statistics
Matches: 114, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 8 0.07
27 104 0.91
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:78431288 original size:81 final size:80
Alignment explanation
Indices: 78431149--78431307 Score: 205
Period size: 81 Copynumber: 2.0 Consensus size: 80
78431139 AGGAAGCGTC
* *
78431149 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCGGTCCTGGTGACTAT
78431214 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* ** *
78431230 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCGGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTAATCTGGTGGCTCTGCCACATATATCGGT-CCTGGTGACT
* *
78431293 TTGGCACAATATCTG
64 ATGCCACAATATCTG
78431308 GTAGCCTCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
80 15 0.22
81 53 0.78
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCGGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:78440018 original size:285 final size:285
Alignment explanation
Indices: 78439680--78440232 Score: 881
Period size: 285 Copynumber: 1.9 Consensus size: 285
78439670 AAAGGAAGTT
*
78439680 TGTGCTCCTTAGAAAGGGAAGATACCAATTGACAGACATGAACTTGTAAAGTGATCTAGCCTCCC
1 TGTGCTCCTTAGAAAGGGAAGATACAAATTGACAGACATGAACTTGTAAAGTGATCTAGCCTCCC
* * * * *
78439745 GAAGAATATGTGTACTGAAATGGATTTAGCCCGGATGGGTAATCCTATTAGGATCTGAATTTAGC
66 AAAAAATATGTGTACTAAAATGGATTTAGCCCGGACGGGTAATCCAATTAGGATCTGAATTTAGC
* * * * *
78439810 TTGGACTAGTAATTCAGATCCGAGCTCATTAGGGTATACGTCATTGTAGGGGGTTTAGCCTGGAC
131 CTGGACTAGTAATTCAGATCCGAGCTCATTAGAGTATACGTCATTGCAGGGGATTCAGCCTGGAC
78439875 TGGTAATCCCGACAATACTCTATGAGTTTATATTACACAGGATTTAACCTGGACTGGTAATCCCG
196 TGGTAATCCCGACAATACTCTATGAGTTTATATTACACAGGATTTAACCTGGACTGGTAATCCCG
*
78439940 TTGTAAGAAAGGAGGTTCGTGGGAG
261 TCGTAAGAAAGGAGGTTCGTGGGAG
**
78439965 TGTGCTCCTTAGAAAGGGAAGATACAAATTGATGGACATGAACTTGTAAAGTGATCTAGCCTCCC
1 TGTGCTCCTTAGAAAGGGAAGATACAAATTGACAGACATGAACTTGTAAAGTGATCTAGCCTCCC
*
78440030 AAAAAATATGTGTGCTAAAATGGATTTAGCCCGGACGGGTAATCCAATTAGGATCTGAATTTAGC
66 AAAAAATATGTGTACTAAAATGGATTTAGCCCGGACGGGTAATCCAATTAGGATCTGAATTTAGC
* * * **
78440095 CTGGGCTGGTAATTCAGATCCGAGCTCATTAGAGTATATGTTGTTGCAGGGGATTCAGCCTGGAC
131 CTGGACTAGTAATTCAGATCCGAGCTCATTAGAGTATACGTCATTGCAGGGGATTCAGCCTGGAC
* * ** *
78440160 TGGTAATCCCGACAATACTTTATGAGTTTATATTATAGGGGATTTAGCCTGGACTGGTAATCCCG
196 TGGTAATCCCGACAATACTCTATGAGTTTATATTACACAGGATTTAACCTGGACTGGTAATCCCG
78440225 TCGTAAGA
261 TCGTAAGA
78440233 GCGTTGTTCG
Statistics
Matches: 243, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
285 243 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (285 bp):
TGTGCTCCTTAGAAAGGGAAGATACAAATTGACAGACATGAACTTGTAAAGTGATCTAGCCTCCC
AAAAAATATGTGTACTAAAATGGATTTAGCCCGGACGGGTAATCCAATTAGGATCTGAATTTAGC
CTGGACTAGTAATTCAGATCCGAGCTCATTAGAGTATACGTCATTGCAGGGGATTCAGCCTGGAC
TGGTAATCCCGACAATACTCTATGAGTTTATATTACACAGGATTTAACCTGGACTGGTAATCCCG
TCGTAAGAAAGGAGGTTCGTGGGAG
Found at i:78442775 original size:19 final size:20
Alignment explanation
Indices: 78442751--78442789 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
78442741 TAAATTTTTC
78442751 TTTTTCTT-TTTCATTCCCT
1 TTTTTCTTCTTTCATTCCCT
*
78442770 TTTTTCTTCTTTCTTTCCCT
1 TTTTTCTTCTTTCATTCCCT
78442790 ACTATTCGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTCTTCTTTCATTCCCT
Found at i:78442892 original size:21 final size:21
Alignment explanation
Indices: 78442852--78442899 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
78442842 TATTATAACT
*
78442852 ATTAT-ATTGTTATATTTTAA
1 ATTATAATTATTATATTTTAA
78442872 ATTATAATTATTAT-TTCTTAA
1 ATTATAATTATTATATT-TTAA
*
78442893 ATAATAA
1 ATTATAA
78442900 GTAAATACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
ATTATAATTATTATATTTTAA
Found at i:78445285 original size:9 final size:9
Alignment explanation
Indices: 78445273--78445297 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
78445263 TTGTTTCACT
78445273 TTCTGACAG
1 TTCTGACAG
78445282 TTCTGACAG
1 TTCTGACAG
78445291 TTCTGAC
1 TTCTGAC
78445298 CGCTCTTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (9 bp):
TTCTGACAG
Found at i:78446936 original size:30 final size:30
Alignment explanation
Indices: 78446902--78446962 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
78446892 TCCTTAACTC
78446902 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
78446932 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
78446962 A
1 A
78446963 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:78453568 original size:19 final size:20
Alignment explanation
Indices: 78453544--78453581 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
78453534 TAAATTTTCC
78453544 TTTTCTT-TTTCTTTCCCTT
1 TTTTCTTCTTTCTTTCCCTT
78453563 TTTTCTTCTTTCTTTCCCT
1 TTTTCTTCTTTCTTTCCCT
78453582 ACTATTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTCTTCTTTCTTTCCCTT
Found at i:78453571 original size:16 final size:17
Alignment explanation
Indices: 78453542--78453574 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
78453532 CCTAAATTTT
*
78453542 CCTTTTCTTTTTCTTTC
1 CCTTTTCTTCTTCTTTC
78453559 CCTTTT-TTCTTCTTTC
1 CCTTTTCTTCTTCTTTC
78453575 TTTCCCTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
CCTTTTCTTCTTCTTTC
Found at i:78457097 original size:15 final size:15
Alignment explanation
Indices: 78457072--78457127 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
78457062 TGATATTTTC
* *
78457072 TTATAGATTTCTTTA
1 TTATGGATTTCTATA
78457087 TGT-TGGATTTCTATA
1 T-TATGGATTTCTATA
* *
78457102 TTATGGATTTCTCTG
1 TTATGGATTTCTATA
78457117 TTATGGATTTC
1 TTATGGATTTC
78457128 CTTATCTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.55
Consensus pattern (15 bp):
TTATGGATTTCTATA
Found at i:78457215 original size:2 final size:2
Alignment explanation
Indices: 78457208--78457237 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
78457198 TTAGATTGCG
78457208 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78457238 CAAGTATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78465559 original size:2 final size:2
Alignment explanation
Indices: 78465552--78465583 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
78465542 ATCAAAAACA
78465552 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78465584 CTAATACGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78466368 original size:31 final size:31
Alignment explanation
Indices: 78466333--78466394 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
78466323 TTCACTCAAA
78466333 TCATTAATGTCTCATAATATAATAATTGATG
1 TCATTAATGTCTCATAATATAATAATTGATG
78466364 TCATTAATGTCTCATAATATAATAATTGATG
1 TCATTAATGTCTCATAATATAATAATTGATG
78466395 ATATATAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.42
Consensus pattern (31 bp):
TCATTAATGTCTCATAATATAATAATTGATG
Found at i:78467612 original size:27 final size:27
Alignment explanation
Indices: 78467567--78467655 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
78467557 ATACATACAT
* * * *
78467567 GTTGTGCCTACCTGACAGGCTCAACTA
1 GTTGAGCCTATCTGGCAGGCACAACTA
* *
78467594 GTTGAGCCTATCTGGCAGGCGCGACTA
1 GTTGAGCCTATCTGGCAGGCACAACTA
* * *
78467621 GTTGTGCCT-TCTTGGTAGGCACAACTG
1 GTTGAGCCTATC-TGGCAGGCACAACTA
*
78467648 GTGGAGCC
1 GTTGAGCC
78467656 CACATACTTA
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (27 bp):
GTTGAGCCTATCTGGCAGGCACAACTA
Found at i:78473684 original size:21 final size:22
Alignment explanation
Indices: 78473642--78473684 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
78473632 TATGTCACAA
78473642 AAAAAAAAATTTAATATCTTAAT
1 AAAAAAAAATTTAATA-CTTAAT
* *
78473665 AAAAAGAATTTTAATA-TTAA
1 AAAAAAAAATTTAATACTTAA
78473685 AATGATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
23 14 0.78
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
AAAAAAAAATTTAATACTTAAT
Found at i:78478266 original size:17 final size:16
Alignment explanation
Indices: 78478246--78478284 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
78478236 TTTTAGTTTT
78478246 TATTTTTTATTTATATA
1 TATTTTTTATTT-TATA
*
78478263 TATTTTTTATTTTATT
1 TATTTTTTATTTTATA
78478279 TATTTT
1 TATTTT
78478285 CTTGCATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TATTTTTTATTTTATA
Found at i:78485409 original size:64 final size:64
Alignment explanation
Indices: 78485298--78485441 Score: 202
Period size: 64 Copynumber: 2.2 Consensus size: 64
78485288 AAAAAAAAAG
*
78485298 CCCTAAAACCCTAAACAATTAAAAACCTAATACCCAAATTTAATTTTTCCTAAACTCTA-TCAAA
1 CCCTAAAACCCTAAACAATTAAAAACATAATACCCAAATTTAATTTTTCC-AAACTCTATTCAAA
* *
78485362 CCCTAAAACCCTAAATAATTAAAAA-ATAATACCCTAATTTAATTTTTTCCAAACTCTATTCAAA
1 CCCTAAAACCCTAAACAATTAAAAACATAATACCCAAATTTAA-TTTTTCCAAACTCTATTCAAA
* * *
78485426 CTCAAAAATCCTAAAC
1 CCCTAAAACCCTAAAC
78485442 CTAGGTCCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
63 23 0.32
64 48 0.68
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (64 bp):
CCCTAAAACCCTAAACAATTAAAAACATAATACCCAAATTTAATTTTTCCAAACTCTATTCAAA
Found at i:78494351 original size:2 final size:2
Alignment explanation
Indices: 78494344--78494378 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
78494334 CTGCCTACTC
*
78494344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78494379 ATTATTCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:78502045 original size:67 final size:69
Alignment explanation
Indices: 78501961--78502122 Score: 181
Period size: 69 Copynumber: 2.4 Consensus size: 69
78501951 GACTCCATTG
** *
78501961 GTTGCCATAGCTGAGCCATGAT-TTATACCTCGAAATCC-CTAT-TTTACTATCCC-GACGAACT
1 GTTGCCATAGCCAAGCCATGATCTTATACCTCAAAATCCTC-ATGTTTACTATCCCAG-CGAACT
78502022 AACCTA
64 AACCTA
* * * * *
78502028 GTTGCCATAGCCAAGCCATGGTCTTATACCTCAAAATCCTCATGTTTACTGTCTCAGTGGACTAA
1 GTTGCCATAGCCAAGCCATGATCTTATACCTCAAAATCCTCATGTTTACTATCCCAGCGAACTAA
78502093 CCTA
66 CCTA
*
78502097 GTTGCCATAGTCCAA-CCATGTTCTTA
1 GTTGCCATAG-CCAAGCCATGATCTTA
78502123 CACAGTATAT
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
67 19 0.23
68 17 0.21
69 40 0.49
70 5 0.06
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (69 bp):
GTTGCCATAGCCAAGCCATGATCTTATACCTCAAAATCCTCATGTTTACTATCCCAGCGAACTAA
CCTA
Found at i:78502143 original size:69 final size:67
Alignment explanation
Indices: 78502019--78502261 Score: 213
Period size: 69 Copynumber: 3.5 Consensus size: 67
78502009 ATCCCGACGA
* * * * *
78502019 ACTAACCTAGTTGCCATAG-CCAAGCCATGGTCTTATACCTCAAAATCCTCATGTTTACTGTCTC
1 ACTAACCTAGTTGCCATAGTCCAA-CCATGGTCTTACACGT-ATATTCCTCGTGTTTACTGTC-C
78502083 AGTGG
63 AGTGG
* * *
78502088 ACTAACCTAGTTGCCATAGTCCAACCATGTTCTTACACAGTATATTCCCCGTGTTTACTGTCCTG
1 ACTAACCTAGTTGCCATAGTCCAACCATGGTCTTACAC-GTATATTCCTCGTGTTTACTGTCCAG
78502153 -GCAG
65 TG--G
*** * * * * *
78502157 ACTATTTTGGTTGTCATAGTCTAACCATGGTCTTACACCGTATATTCCTTGTGTTTACTGTCCCG
1 ACTAACCTAGTTGCCATAGTCCAACCATGGTCTTACA-CGTATATTCCTCGTGTTTACTGT-CCA
*
78502222 GTGA
64 GTGG
* *
78502226 ACTATCCT-GATTGCCATAGTCCAACCATGGTTTTAC
1 ACTAACCTAG-TTGCCATAGTCCAACCATGGTCTTAC
78502262 CTAGTTGCCA
Statistics
Matches: 142, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
67 1 0.01
68 3 0.02
69 128 0.90
70 9 0.06
71 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.34
Consensus pattern (67 bp):
ACTAACCTAGTTGCCATAGTCCAACCATGGTCTTACACGTATATTCCTCGTGTTTACTGTCCAGT
GG
Found at i:78502342 original size:99 final size:99
Alignment explanation
Indices: 78502166--78502355 Score: 290
Period size: 99 Copynumber: 1.9 Consensus size: 99
78502156 GACTATTTTG
* * ** * * * *
78502166 GTTGTCATAGTCTAACCATGGTCTTACACCGTATATTCCTTGTGTTTACTGTCCCGGTGAACTAT
1 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
78502231 CCTGATTGCCATAGTCCAACCATGGTTTTACCTA
66 CCTGATTGCCATAGTCCAACCATGGTTTTACCTA
78502265 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
1 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
* *
78502330 CCTGGTTGCCATAGTCCAACCCTGGT
66 CCTGATTGCCATAGTCCAACCATGGT
78502356 ATTATACTGT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 81 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (99 bp):
GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
CCTGATTGCCATAGTCCAACCATGGTTTTACCTA
Found at i:78502382 original size:69 final size:69
Alignment explanation
Indices: 78502265--78502521 Score: 302
Period size: 69 Copynumber: 3.7 Consensus size: 69
78502255 GTTTTACCTA
** * * *
78502265 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
1 GTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACTGTCACAGTGAACTAT
78502330 CCTG
66 CCTG
* * * * * * * * * *
78502334 GTTGCCATAGTCCAACCCTGGTATTATACTGTAAATTCCTCATGTTTACTATAATAG-CAGACTA
1 GTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACTGTCACAGTGA-ACTA
78502398 TCCTG
65 TCCTG
* * *
78502403 GTTGCCATAGTCCAACCATGGTTTTACACCGTATATTCCTTGTGTTTACTGTCTC-GATGAACTA
1 GTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACTGTCACAG-TGAACTA
*
78502467 TCCTA
65 TCCTG
*
78502472 GTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCCCGTGTTTACT
1 GTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACT
78502522 CGGAGCTTCG
Statistics
Matches: 155, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
68 2 0.01
69 152 0.98
70 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (69 bp):
GTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCTCGTGTTTACTGTCACAGTGAACTAT
CCTG
Found at i:78502382 original size:168 final size:168
Alignment explanation
Indices: 78502092--78502429 Score: 421
Period size: 168 Copynumber: 2.0 Consensus size: 168
78502082 CAGTGGACTA
** * *
78502092 ACCTAGTTGCCATAGTCCAACCATGTTCTTACACAGTATATTCCCCGTGTTTACTGTCCTGGCAG
1 ACCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCACCGTGTTTACTGTCCAGGCAG
** * * * * ** * * *
78502157 ACTATTTTGGTTGTCATAGTCTAACCATGGTCTTACACCGTATATTCCTTGTGTTTACTGT-CCC
66 ACTATCCTGGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCTCATGTTTACTATAACA
**
78502221 GGTGAACTATCCTGATTGCCATAGTCCAACCATGGTTTT
131 GCAG-ACTATCCTGATTGCCATAGTCCAACCATGGTTTT
*
78502260 ACCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTG-
1 ACCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCACCGTGTTTACTGT-CCAG-GC
* * *
78502324 A-ACTATCCTGGTTGCCATAGTCCAACCCTGGTATTATACTGTAAATTCCTCATGTTTACTATAA
64 AGACTATCCTGGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCTCATGTTTACTATAA
* *
78502388 TAGCAGACTATCCTGGTTGCCATAGTCCAACCATGGTTTT
129 CAGCAGACTATCCTGATTGCCATAGTCCAACCATGGTTTT
78502428 AC
1 AC
78502430 ACCGTATATT
Statistics
Matches: 144, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
168 137 0.95
169 6 0.04
170 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (168 bp):
ACCTAGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCACCGTGTTTACTGTCCAGGCAG
ACTATCCTGGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCTCATGTTTACTATAACA
GCAGACTATCCTGATTGCCATAGTCCAACCATGGTTTT
Found at i:78502438 original size:237 final size:237
Alignment explanation
Indices: 78502070--78502498 Score: 626
Period size: 237 Copynumber: 1.8 Consensus size: 237
78502060 AAAATCCTCA
* * * * *
78502070 TGTTTACTGTCTCAGTGGACTAACCTAGTTGCCATAGTCCAACCATGTTCTTACACAGTATATTC
1 TGTTTACTGTCCCAGTGAACTAACCTAGTTGCCATAGTCCAACCATGGTATTACACAGTAAATTC
* * ** * ** * *
78502135 CCCGTGTTTACTGTCCTGGCAGACTATTTTGGTTGTCATAGTCTAACCATGGTCTTACACCGTAT
66 CCCATGTTTACTATAATAGCAGACTATCCTGGTTGCCATAGTCCAACCATGGTCTTACACCGTAT
* *
78502200 ATTCCTTGTGTTTACTGTCCCGGTGAACTATCCT-GATTGCCATAGTCCAACCATGGTTTTACCT
131 ATTCCTTGTGTTTACTGTCCCGATGAACTATCCTAG-TTGCCATAGTCCAACCATGGTCTTACCT
78502264 AGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCG
195 AGTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCG
* * * * *
78502307 TGTTTACTGTCCCAGTGAACTATCCTGGTTGCCATAGTCCAACCCTGGTATTATACTGTAAATTC
1 TGTTTACTGTCCCAGTGAACTAACCTAGTTGCCATAGTCCAACCATGGTATTACACAGTAAATTC
* *
78502372 CTCATGTTTACTATAATAGCAGACTATCCTGGTTGCCATAGTCCAACCATGGTTTTACACCGTAT
66 CCCATGTTTACTATAATAGCAGACTATCCTGGTTGCCATAGTCCAACCATGGTCTTACACCGTAT
*
78502437 ATTCCTTGTGTTTACTGTCTCGATGAACTATCCTAGTTGCCATAGTCCAACCATGGTCTTAC
131 ATTCCTTGTGTTTACTGTCCCGATGAACTATCCTAGTTGCCATAGTCCAACCATGGTCTTAC
78502499 ACCGTATATT
Statistics
Matches: 167, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
237 166 0.99
238 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.35
Consensus pattern (237 bp):
TGTTTACTGTCCCAGTGAACTAACCTAGTTGCCATAGTCCAACCATGGTATTACACAGTAAATTC
CCCATGTTTACTATAATAGCAGACTATCCTGGTTGCCATAGTCCAACCATGGTCTTACACCGTAT
ATTCCTTGTGTTTACTGTCCCGATGAACTATCCTAGTTGCCATAGTCCAACCATGGTCTTACCTA
GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCG
Found at i:78502518 original size:138 final size:138
Alignment explanation
Indices: 78502265--78502521 Score: 363
Period size: 138 Copynumber: 1.9 Consensus size: 138
78502255 GTTTTACCTA
78502265 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
1 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
* * * * *
78502330 CCTGGTTGCCATAGTCCAACCCTGGTATTATACTGTAAATTCCTCATGTTTACTATAATAGCAGA
66 CCTAGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCCCATGTTTACTATAATAGCAGA
78502395 CTATCCTG
131 CTATCCTG
** * * * * *
78502403 GTTGCCATAGTCCAACCATGGTTTTACACCGTATATTCCTTGTGTTTACTGTCTC-GATGAACTA
1 GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAG-TGAACTA
* * *
78502467 TCCTAGTTGCCATAGTCCAACCATGGTCTTACACCGTATATTCCCCGTGTTTACT
65 TCCTAGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCCCATGTTTACT
78502522 CGGAGCTTCG
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
137 1 0.01
138 102 0.99
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (138 bp):
GTTGCCATAGTCCAACCATAATCTTACACAGTATATTCATCGTGTTTACTGTCCCAGTGAACTAT
CCTAGTTGCCATAGTCCAACCATGGTATTACACCGTAAATTCCCCATGTTTACTATAATAGCAGA
CTATCCTG
Found at i:78502991 original size:96 final size:96
Alignment explanation
Indices: 78502826--78503018 Score: 368
Period size: 96 Copynumber: 2.0 Consensus size: 96
78502816 GATTCATAGT
*
78502826 CAATTTATGCATATTGAACTAGAGTGGCAGATTCTCATATACTTATTATCTCAGGGGTGGAGTGC
1 CAATTTATGCATATTGAACTAGAATGGCAGATTCTCATATACTTATTATCTCAGGGGTGGAGTGC
78502891 AGAAACTCACCTGACACTTCTTTGCCTCCTC
66 AGAAACTCACCTGACACTTCTTTGCCTCCTC
*
78502922 CAATTTATGCATATTGAACTAGAATGGCAGATTCTCATATACTTATTATCTCAGGGGTGGAGTGT
1 CAATTTATGCATATTGAACTAGAATGGCAGATTCTCATATACTTATTATCTCAGGGGTGGAGTGC
78502987 AGAAACTCACCTGACACTTCTTTGCCTCCTC
66 AGAAACTCACCTGACACTTCTTTGCCTCCTC
78503018 C
1 C
78503019 TTCGCTTAAC
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (96 bp):
CAATTTATGCATATTGAACTAGAATGGCAGATTCTCATATACTTATTATCTCAGGGGTGGAGTGC
AGAAACTCACCTGACACTTCTTTGCCTCCTC
Found at i:78505111 original size:30 final size:30
Alignment explanation
Indices: 78505031--78505100 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
78505021 TAAAGTCAGT
*
78505031 TACATAATATAAATAGTAATAAACATGACA
1 TACATAATATAAATAGTAATAAACATAACA
* *
78505061 TAAATAATATAAACAGTAATAAACATAACA
1 TACATAATATAAATAGTAATAAACATAACA
78505091 TACATAATAT
1 TACATAATAT
78505101 CTATACTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.59, C:0.10, G:0.04, T:0.27
Consensus pattern (30 bp):
TACATAATATAAATAGTAATAAACATAACA
Found at i:78505131 original size:25 final size:24
Alignment explanation
Indices: 78505094--78505180 Score: 64
Period size: 25 Copynumber: 3.8 Consensus size: 24
78505084 CATAACATAC
78505094 ATAATAT-CTATACTAATATACATGT
1 ATAATATAC-ATACTAATATACAT-T
*
78505119 ATAATATACATAC--ATAAACA-T
1 ATAATATACATACTAATATACATT
78505140 -TAATATAC--A-TAATATACATAT
1 ATAATATACATACTAATATACAT-T
* *
78505161 ATAATAGACATACTAGTATA
1 ATAATATACATACTAATATA
78505181 TCAATTGACT
Statistics
Matches: 49, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
18 1 0.02
19 6 0.12
20 8 0.16
21 2 0.04
22 7 0.14
23 6 0.12
24 1 0.02
25 17 0.35
26 1 0.02
ACGTcount: A:0.51, C:0.11, G:0.03, T:0.34
Consensus pattern (24 bp):
ATAATATACATACTAATATACATT
Found at i:78505134 original size:42 final size:42
Alignment explanation
Indices: 78505077--78505173 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
78505067 ATATAAACAG
* * * *
78505077 TAATAAACATAACATACATAATATCTATAC-TAATATACATGTA
1 TAATAAACAT-ACATAAACAATA-ATATACATAATATACATATA
* *
78505120 TAATATACATACATAAACATTAATATACATAATATACATATA
1 TAATAAACATACATAAACAATAATATACATAATATACATATA
*
78505162 TAATAGACATAC
1 TAATAAACATAC
78505174 TAGTATATCA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
41 5 0.11
42 32 0.70
43 9 0.20
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.32
Consensus pattern (42 bp):
TAATAAACATACATAAACAATAATATACATAATATACATATA
Found at i:78505135 original size:13 final size:13
Alignment explanation
Indices: 78505088--78505173 Score: 68
Period size: 13 Copynumber: 6.5 Consensus size: 13
78505078 AATAAACATA
78505088 ACATACATAATAT
1 ACATACATAATAT
78505101 -CTATAC-TAATAT
1 AC-ATACATAATAT
**
78505113 ACATGTATAATAT
1 ACATACATAATAT
*
78505126 ACATACATAAACATT
1 ACATACAT-AATA-T
*
78505141 AATATACATAATAT
1 -ACATACATAATAT
* *
78505155 ACATATATAATAG
1 ACATACATAATAT
78505168 ACATAC
1 ACATAC
78505174 TAGTATATCA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
12 9 0.16
13 32 0.57
14 4 0.07
15 4 0.07
16 7 0.12
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (13 bp):
ACATACATAATAT
Found at i:78505149 original size:10 final size:9
Alignment explanation
Indices: 78505119--78505163 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
78505109 ATATACATGT
78505119 ATAATATAC
1 ATAATATAC
*
78505128 ATACATAAAC
1 ATA-ATATAC
78505138 ATTAATATAC
1 A-TAATATAC
78505148 ATAATATAC
1 ATAATATAC
78505157 AT-ATATA
1 ATAATATA
78505164 ATAGACATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 5 0.16
9 13 0.41
10 12 0.38
11 2 0.06
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAATATAC
Found at i:78507701 original size:2 final size:2
Alignment explanation
Indices: 78507694--78507719 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
78507684 ATGCTTAGCA
78507694 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
78507720 GCCTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.