Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 263 of 328
Found at i:78508327 original size:19 final size:19
Alignment explanation
Indices: 78508292--78508329 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
78508282 AAGTTCTTTT
78508292 TATTATTTTTTTCAATTTA
1 TATTATTTTTTTCAATTTA
*
78508311 TATT-TTTTATTTTAATTTA
1 TATTATTTT-TTTCAATTTA
78508330 ATTGTCTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTATTTTTTTCAATTTA
Found at i:78510257 original size:18 final size:19
Alignment explanation
Indices: 78510222--78510262 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
78510212 TAATAAATAA
*
78510222 TAAATTTTAGAAAAAAATT
1 TAAATTTTAGAAAAAAATG
*
78510241 TAAATTTTA-ATAAAAATG
1 TAAATTTTAGAAAAAAATG
78510259 TAAA
1 TAAA
78510263 ATTATGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAATTTTAGAAAAAAATG
Found at i:78510264 original size:19 final size:19
Alignment explanation
Indices: 78510223--78510284 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
78510213 AATAAATAAT
*
78510223 AAATTTTAGAAAAAAATTT
1 AAATTTTAGAAAAAAATTA
*
78510242 AAATTTTA-ATAAAAATGTA
1 AAATTTTAGAAAAAAAT-TA
* *
78510261 AAATTAT-GAAAAATTATTA
1 AAATTTTAGAAAAA-AATTA
78510280 AAATT
1 AAATT
78510285 AGAAATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
18 7 0.20
19 26 0.74
20 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AAATTTTAGAAAAAAATTA
Found at i:78510542 original size:10 final size:9
Alignment explanation
Indices: 78510529--78510602 Score: 51
Period size: 10 Copynumber: 7.8 Consensus size: 9
78510519 ATTTCTTTAC
78510529 ATTTTGTATA
1 ATTTT-TATA
*
78510539 ATTTTTATT
1 ATTTTTATA
78510548 ATTTTTATAA
1 ATTTTTAT-A
*
78510558 AATTTTAT-
1 ATTTTTATA
*
78510566 ATTTTTATG
1 ATTTTTATA
* *
78510575 CTTTTTTTA
1 ATTTTTATA
78510584 TATTTTTAATAA
1 -ATTTTT-AT-A
78510596 ATTTTTA
1 ATTTTTA
78510603 ATATTTGAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
8 7 0.14
9 17 0.34
10 18 0.36
11 7 0.14
12 1 0.02
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (9 bp):
ATTTTTATA
Found at i:78510570 original size:37 final size:38
Alignment explanation
Indices: 78510524--78510608 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 38
78510514 TTTATATTTC
*
78510524 TTTACATTTTGTATAATTTTTAT-TATTTTT-ATAAAAT
1 TTTATATTTT-TATAATTTTTATATATTTTTAATAAAAT
** * *
78510561 TTTATATTTTTATGCTTTTTTTATATTTTTAATAAATT
1 TTTATATTTTTATAATTTTTATATATTTTTAATAAAAT
78510599 TTTAATATTT
1 TTT-ATATTT
78510609 GAATTTTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
36 9 0.22
37 16 0.40
38 9 0.22
39 6 0.15
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (38 bp):
TTTATATTTTTATAATTTTTATATATTTTTAATAAAAT
Found at i:78510600 original size:19 final size:18
Alignment explanation
Indices: 78510524--78510608 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 18
78510514 TTTATATTTC
*
78510524 TTTACATTTTGTAT-AATT
1 TTTATATTTT-TATAAATT
*
78510542 TTTATTATTTTTATAAAAT
1 TTTA-TATTTTTATAAATT
***
78510561 TTTATATTTTTATGCTTTT
1 TTTATATTTTTAT-AAATT
78510580 TTTATATTTTTAATAAATT
1 TTTATATTTTT-ATAAATT
78510599 TTTAATATTT
1 TTT-ATATTT
78510609 GAATTTTTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
18 16 0.30
19 29 0.55
20 8 0.15
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
TTTATATTTTTATAAATT
Found at i:78510617 original size:37 final size:37
Alignment explanation
Indices: 78510540--78510617 Score: 88
Period size: 38 Copynumber: 2.1 Consensus size: 37
78510530 TTTTGTATAA
**
78510540 TTTTTATTATTTTTATAAAATTTTATATTTTTATGCTT
1 TTTTTATTATTTTTATAAAATTTTATATTTGAAT-CTT
*
78510578 TTTTTA-TATTTTTAATAAATTTTTAATATTTGAAT-TT
1 TTTTTATTATTTTT-ATAAAATTTT-ATATTTGAATCTT
78510615 TTT
1 TTT
78510618 ATTAAAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
37 12 0.34
38 15 0.43
39 8 0.23
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.68
Consensus pattern (37 bp):
TTTTTATTATTTTTATAAAATTTTATATTTGAATCTT
Found at i:78510836 original size:86 final size:85
Alignment explanation
Indices: 78510689--78510971 Score: 367
Period size: 90 Copynumber: 3.2 Consensus size: 85
78510679 AACAAAAGAA
* * *
78510689 AGGGGTTTAATTGCTTTTTTTAAAAAG-TTTGAGTGTCTTTTT-GATGCATTTTGAAAGTTCAAG
1 AGGGGCTTAATTG-TTTTTTT--AAAGCTTTGAGAG-CTTTTTGGATGTATTTTGAAAGTTCAAG
* *
78510752 TACCTAATTGAGTGCAAAAAAAGAGC
62 TACCCAAATGAGTGCAAAAAAA-A-C
*
78510778 AGGGGCTTAATT-TTTTTTTAAAGCTTTGAGAGCTTTTTGGATGTATTTTGAAACTTCAAGTACC
1 AGGGGCTTAATTGTTTTTTTAAAGCTTTGAGAGCTTTTTGGATGTATTTTGAAAGTTCAAGTACC
*
78510842 CAAATGAGTGCAAAAAAAAAAAAAT
66 CAAATGAGTGC-----AAAAAAAAC
78510867 AGGGGCTTAATTGTTTTTTTTAAAGCTTTGAGAGC-TTTTGGATGTATTTTGAAAGTTCAAGTAC
1 AGGGGCTTAATTG-TTTTTTTAAAGCTTTGAGAGCTTTTTGGATGTATTTTGAAAGTTCAAGTAC
78510931 CCAAATGAGTGCAAAAAAAAC
65 CCAAATGAGTGCAAAAAAAAC
78510952 AGGGGCTTAATTGTTTTTTT
1 AGGGGCTTAATTGTTTTTTT
78510972 TAAAAAAGTT
Statistics
Matches: 176, Mismatches: 9, Indels: 23
0.85 0.04 0.11
Matches are distributed among these distances:
84 7 0.04
85 31 0.18
86 39 0.22
87 7 0.04
89 23 0.13
90 41 0.23
91 28 0.16
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (85 bp):
AGGGGCTTAATTGTTTTTTTAAAGCTTTGAGAGCTTTTTGGATGTATTTTGAAAGTTCAAGTACC
CAAATGAGTGCAAAAAAAAC
Found at i:78510920 original size:90 final size:87
Alignment explanation
Indices: 78510689--78510975 Score: 377
Period size: 86 Copynumber: 3.3 Consensus size: 87
78510679 AACAAAAGAA
* * * * *
78510689 AGGGGTTTAATTGCTTTTTTTAAAAAG-TTTGAGTGTCTTTTTGATGCATTTTGAAAGTTCAAGT
1 AGGGGCTTAATTG-TTTTTTT-TAAAGCTTTGAGAG-CTTTTGGATGTATTTTGAAAGTTCAAGT
* * * *
78510753 ACCTAATTGAGTGCAAAAAAAGAGC
63 ACCCAAATGAGTGCAAAAAAAAAAC
*
78510778 AGGGGCTTAA-T-TTTTTTTTAAAGCTTTGAGAGCTTTTTGGATGTATTTTGAAACTTCAAGTAC
1 AGGGGCTTAATTGTTTTTTTTAAAGCTTTGAGAGC-TTTTGGATGTATTTTGAAAGTTCAAGTAC
*
78510841 CCAAATGAGTGCAAAAAAAAAAAAAT
65 CCAAATGAGTGC---AAAAAAAAAAC
78510867 AGGGGCTTAATTGTTTTTTTTAAAGCTTTGAGAGCTTTTGGATGTATTTTGAAAGTTCAAGTACC
1 AGGGGCTTAATTGTTTTTTTTAAAGCTTTGAGAGCTTTTGGATGTATTTTGAAAGTTCAAGTACC
78510932 CAAATGAGTGC--AAAAAAAAC
66 CAAATGAGTGCAAAAAAAAAAC
78510952 AGGGGCTTAATTGTTTTTTTTAAA
1 AGGGGCTTAATTGTTTTTTTTAAA
78510976 AAAGTTTGAG
Statistics
Matches: 178, Mismatches: 13, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
85 37 0.21
86 50 0.28
88 1 0.01
89 27 0.15
90 41 0.23
91 22 0.12
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (87 bp):
AGGGGCTTAATTGTTTTTTTTAAAGCTTTGAGAGCTTTTGGATGTATTTTGAAAGTTCAAGTACC
CAAATGAGTGCAAAAAAAAAAC
Found at i:78515765 original size:13 final size:13
Alignment explanation
Indices: 78515724--78515767 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
78515714 AAGATTTAGT
78515724 ATTTATTAGTATA
1 ATTTATTAGTATA
* *
78515737 ATATATT--TAAA
1 ATTTATTAGTATA
78515748 ATTTATTAGTATA
1 ATTTATTAGTATA
78515761 ATTTATT
1 ATTTATT
78515768 TGACCTAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.36
13 16 0.64
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (13 bp):
ATTTATTAGTATA
Found at i:78516757 original size:19 final size:19
Alignment explanation
Indices: 78516733--78516770 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
78516723 GTTCACCACT
78516733 AATTAAATGTGATGGACGG
1 AATTAAATGTGATGGACGG
78516752 AATTAAATGTGATGGACGG
1 AATTAAATGTGATGGACGG
78516771 TGGTGGGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.32, T:0.26
Consensus pattern (19 bp):
AATTAAATGTGATGGACGG
Found at i:78521559 original size:14 final size:14
Alignment explanation
Indices: 78521540--78521566 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
78521530 AATCTATGTG
78521540 TTTTATTTTATTTA
1 TTTTATTTTATTTA
78521554 TTTTATTTTATTT
1 TTTTATTTTATTT
78521567 TTCACAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:78525228 original size:26 final size:26
Alignment explanation
Indices: 78525192--78525243 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
78525182 AATTGGGTAG
78525192 TTTACCCTATTTATATTTTTTTATAA
1 TTTACCCTATTTATATTTTTTTATAA
78525218 TTTACCCTATTTATATTTTTTTATAA
1 TTTACCCTATTTATATTTTTTTATAA
78525244 AAGTAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTACCCTATTTATATTTTTTTATAA
Found at i:78525254 original size:26 final size:26
Alignment explanation
Indices: 78525199--78525261 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
78525189 TAGTTTACCC
** **
78525199 TATTTATATTTTTTTATAATTTACCC
1 TATTTATATTTTTTTATAAAGTACAA
78525225 TATTTATATTTTTTTATAAAAGTA-AA
1 TATTTATATTTTTTTAT-AAAGTACAA
78525251 TA-TTAT-TTTTT
1 TATTTATATTTTT
78525262 AAAAGATGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 5 0.16
25 4 0.12
26 19 0.59
27 4 0.12
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (26 bp):
TATTTATATTTTTTTATAAAGTACAA
Found at i:78529842 original size:26 final size:25
Alignment explanation
Indices: 78529793--78529850 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
78529783 AGGAAATCTC
* *
78529793 ATTTTCTCTTTTTTAATTTTATTT-A
1 ATTTT-TCTTTTTTAAATTAATTTGA
78529818 TATTTTTCTTTTTTAGAATTAATTTGA
1 -ATTTTTCTTTTTTA-AATTAATTTGA
78529845 ATTTTT
1 ATTTTT
78529851 TTCCTAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 9 0.32
26 18 0.64
27 1 0.04
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.69
Consensus pattern (25 bp):
ATTTTTCTTTTTTAAATTAATTTGA
Found at i:78535360 original size:23 final size:26
Alignment explanation
Indices: 78535333--78535381 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 26
78535323 TGTAAATTAG
*
78535333 AAAATTATCTC-T-AGA-AATTTTCT
1 AAAATAATCTCTTCAGAGAATTTTCT
78535356 AAAATAATCTCTTCAGAGAATTTTCT
1 AAAATAATCTCTTCAGAGAATTTTCT
78535382 TTCTATAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 1 0.05
25 3 0.14
26 8 0.36
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.41
Consensus pattern (26 bp):
AAAATAATCTCTTCAGAGAATTTTCT
Found at i:78535509 original size:16 final size:16
Alignment explanation
Indices: 78535488--78535536 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
78535478 TTAATCACTT
78535488 TAATATTAAATTAATA
1 TAATATTAAATTAATA
* *
78535504 TAATATTTAATAAATA
1 TAATATTAAATTAATA
* *
78535520 TTATATTAATTTAATA
1 TAATATTAAATTAATA
78535536 T
1 T
78535537 TAAACCTTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:78535627 original size:20 final size:18
Alignment explanation
Indices: 78535580--78535687 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
78535570 CAAGATAAAC
78535580 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
78535597 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
78535617 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
78535636 ATTAAGATAAATA-TTAA-
1 ATTAA-ATTAATATTTAAT
*
78535653 AGTTAAATTTAATATTAAACT
1 A-TTAAA-TTAATATTTAA-T
*
78535674 ATTAAAATAATATT
1 ATTAAATTAATATT
78535688 ATTTTTGGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
17 10 0.14
18 12 0.17
19 21 0.30
20 26 0.37
21 1 0.01
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:78536069 original size:27 final size:27
Alignment explanation
Indices: 78536039--78536093 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
78536029 AAGTTCAATT
78536039 ACCCATTAGGCCAATTGTCTGACTTGA
1 ACCCATTAGGCCAATTGTCTGACTTGA
* *
78536066 ACCCATTGGGCCAATTGTTTGACTTGA
1 ACCCATTAGGCCAATTGTCTGACTTGA
78536093 A
1 A
78536094 AATTAATTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (27 bp):
ACCCATTAGGCCAATTGTCTGACTTGA
Found at i:78545920 original size:16 final size:17
Alignment explanation
Indices: 78545890--78545923 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
78545880 TAATTAATTT
78545890 TAATTAATAAATTTTTA
1 TAATTAATAAATTTTTA
*
78545907 TAATTAATAATTTTTTA
1 TAATTAATAAATTTTTA
78545924 AACTCGATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAATTAATAAATTTTTA
Found at i:78547985 original size:38 final size:38
Alignment explanation
Indices: 78547908--78547986 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
78547898 AAGCTTTATT
** * *
78547908 ACACCGGCAATAAGCCTGTTAGGTACTAAACCTGGATA
1 ACACCGGCAATAAGCCTACTAGGCACTAAACCTGAATA
* * *
78547946 ACACCGGCACTAAGCCTACTAGGCACTAAGCTTGAATA
1 ACACCGGCAATAAGCCTACTAGGCACTAAACCTGAATA
78547984 ACA
1 ACA
78547987 ATACGGTTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (38 bp):
ACACCGGCAATAAGCCTACTAGGCACTAAACCTGAATA
Found at i:78550577 original size:15 final size:15
Alignment explanation
Indices: 78550547--78550585 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
78550537 TTGATTGATC
78550547 CAAATTTTCATTAAAAA
1 CAAATTTT--TTAAAAA
*
78550564 CTAATTTTTTAAAAA
1 CAAATTTTTTAAAAA
78550579 CAAATTT
1 CAAATTT
78550586 ATCAATAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
17 7 0.35
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (15 bp):
CAAATTTTTTAAAAA
Found at i:78551246 original size:20 final size:20
Alignment explanation
Indices: 78551223--78551264 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
78551213 ATGATTGATG
78551223 AATGATGTATTACTCAAATC
1 AATGATGTATTACTCAAATC
78551243 AATGATGTATTACTCAAATC
1 AATGATGTATTACTCAAATC
78551263 AA
1 AA
78551265 ATTTGGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (20 bp):
AATGATGTATTACTCAAATC
Found at i:78551618 original size:2 final size:2
Alignment explanation
Indices: 78551611--78551647 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
78551601 TCAACCTGTT
78551611 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
78551648 GCATTTCCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:78553214 original size:21 final size:22
Alignment explanation
Indices: 78553175--78553217 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
78553165 TATATTTAAA
78553175 TAAAATTATTAATATTTATTTG
1 TAAAATTATTAATATTTATTTG
* *
78553197 TAAATTTATTATTA-TTATTTG
1 TAAAATTATTAATATTTATTTG
78553218 ATTTATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (22 bp):
TAAAATTATTAATATTTATTTG
Found at i:78559350 original size:6 final size:6
Alignment explanation
Indices: 78559339--78559363 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
78559329 TAGGATCATT
78559339 TTAGGC TTAGGC TTAGGC TTAGGC T
1 TTAGGC TTAGGC TTAGGC TTAGGC T
78559364 GTTTGTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.36
Consensus pattern (6 bp):
TTAGGC
Found at i:78560146 original size:83 final size:80
Alignment explanation
Indices: 78559994--78560154 Score: 225
Period size: 83 Copynumber: 2.0 Consensus size: 80
78559984 TGCAAGGTGC
* * *
78559994 TGGATCTTGACTCTGCTTTGTTTTCTATCAGTAGAATGATTATTTTCTGATAATGGACGAATAAT
1 TGGATCTTGACTCTGCTTTGGTTTCTATCAGTACAATCATTATTTTCTGATAATGGACGAATAAT
78560059 AAAATGAACGGTTGT
66 AAAATGAACGGTTGT
* *
78560074 TGGATCTTGACTCTCTGCTTTGGTTTCTATCAGTACAATCA-TAGTTTTTGTGATAATTGACGAA
1 TGGATCTTGA--CTCTGCTTTGGTTTCTATCAGTACAATCATTA--TTTTCTGATAATGGACGAA
*
78560138 TAATAAAATGAATGGTT
62 TAATAAAATGAACGGTT
78560155 CCATTTGGCT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
80 10 0.14
81 2 0.03
82 26 0.37
83 33 0.46
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (80 bp):
TGGATCTTGACTCTGCTTTGGTTTCTATCAGTACAATCATTATTTTCTGATAATGGACGAATAAT
AAAATGAACGGTTGT
Found at i:78560470 original size:6 final size:6
Alignment explanation
Indices: 78560452--78560491 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
78560442 AAGTGGTGGC
*
78560452 GGGGCT GGAGCT GGGGCT GGGGCT GGGGCT GGGGCT GGGG
1 GGGGCT GGGGCT GGGGCT GGGGCT GGGGCT GGGGCT GGGG
78560492 GAGATTTGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.03, C:0.15, G:0.68, T:0.15
Consensus pattern (6 bp):
GGGGCT
Found at i:78571587 original size:21 final size:23
Alignment explanation
Indices: 78571561--78571604 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
78571551 GGTAGGAATG
78571561 TTTTTG-AAAAACT-TGCATTGA
1 TTTTTGAAAAAACTCTGCATTGA
78571582 TTTTTGAAAAAACTCTGCATTGA
1 TTTTTGAAAAAACTCTGCATTGA
78571605 CATTCTCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 6 0.29
22 7 0.33
23 8 0.38
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (23 bp):
TTTTTGAAAAAACTCTGCATTGA
Found at i:78572950 original size:16 final size:17
Alignment explanation
Indices: 78572886--78572996 Score: 79
Period size: 17 Copynumber: 6.3 Consensus size: 17
78572876 TCCAAAAATA
*
78572886 ATATTATTTTAATAGATTT
1 ATATTAATTTAAT--ATTT
78572905 AATATTAAATTTAATATTT
1 -ATATT-AATTTAATATTT
*
78572924 ATCTTAA--TAATATTT
1 ATATTAATTTAATATTT
*
78572939 -TATTAATTTAATATTAA
1 ATATTAATTTAATATT-T
78572956 AGTGATT-ATCTTAATATTT
1 A-T-ATTAAT-TTAATATTT
78572975 A-ATTTAATTTAATATTT
1 ATA-TTAATTTAATATTT
78572992 ATATT
1 ATATT
78572997 GTAGATAAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 25
0.71 0.05 0.24
Matches are distributed among these distances:
14 5 0.07
15 8 0.11
16 8 0.11
17 16 0.21
18 7 0.09
19 8 0.11
20 16 0.21
21 7 0.09
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.55
Consensus pattern (17 bp):
ATATTAATTTAATATTT
Found at i:78572953 original size:11 final size:11
Alignment explanation
Indices: 78572884--78572955 Score: 55
Period size: 12 Copynumber: 6.8 Consensus size: 11
78572874 ATTCCAAAAA
*
78572884 TAATATTATTT
1 TAATATTAATT
*
78572895 TAATA--GATT
1 TAATATTAATT
78572904 TAATATTAAATT
1 TAATATT-AATT
*
78572916 TAATATTTATCT
1 TAATATTAAT-T
*
78572928 TAATAAT-ATT
1 TAATATTAATT
78572938 T--TATTAATT
1 TAATATTAATT
78572947 TAATATTAA
1 TAATATTAA
78572956 AGTGATTATC
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
8 3 0.06
9 11 0.23
10 2 0.04
11 15 0.31
12 17 0.35
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:78575084 original size:49 final size:49
Alignment explanation
Indices: 78574966--78575089 Score: 126
Period size: 49 Copynumber: 2.5 Consensus size: 49
78574956 CTTACACAGT
* * *
78574966 CTACCTGATTTG-CTAGTGTAATCGCACACACCCATGTACCCTACACGTC
1 CTACCTGATTTGAC-CGTGTAATCGCACACACCCATGTACCCCACACGGC
* ** ** *
78575015 CTCCCTGATTTGACTATGTAATCGCACACACCTGTGTGCCCCACACGGC
1 CTACCTGATTTGACCGTGTAATCGCACACACCCATGTACCCCACACGGC
*
78575064 CTACCT-ATTTTGCCCGTGTAATCGCA
1 CTACCTGA-TTTGACCGTGTAATCGCA
78575090 TATGCTCGTG
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.02
49 59 0.97
50 1 0.02
ACGTcount: A:0.22, C:0.35, G:0.16, T:0.27
Consensus pattern (49 bp):
CTACCTGATTTGACCGTGTAATCGCACACACCCATGTACCCCACACGGC
Found at i:78587454 original size:34 final size:34
Alignment explanation
Indices: 78587416--78587480 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
78587406 AACAGTTCAA
* * *
78587416 GGCCTAAGCTCTTTTCAGTATCAGTAGCAGTTTG
1 GGCCTAAGCCCATCTCAGTATCAGTAGCAGTTTG
* *
78587450 GGCCTTAGCCCATCTCAGTATCAGTATCAGT
1 GGCCTAAGCCCATCTCAGTATCAGTAGCAGT
78587481 CATGCAGTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (34 bp):
GGCCTAAGCCCATCTCAGTATCAGTAGCAGTTTG
Found at i:78590132 original size:27 final size:25
Alignment explanation
Indices: 78590078--78590137 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
78590068 TATGTATTTG
* *
78590078 AAATTTAGTTTTTTTTTGTTTTTAA
1 AAATTTAGTTTTTTTTTGATTGTAA
78590103 AAATTTAGTCTTATTTTTTCGATTGT-A
1 AAATTTAGT-TT-TTTTTT-GATTGTAA
78590130 AAATTTAG
1 AAATTTAG
78590138 ATTTAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 9 0.30
26 2 0.07
27 15 0.50
28 4 0.13
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.58
Consensus pattern (25 bp):
AAATTTAGTTTTTTTTTGATTGTAA
Found at i:78592250 original size:16 final size:15
Alignment explanation
Indices: 78592234--78592295 Score: 54
Period size: 15 Copynumber: 3.9 Consensus size: 15
78592224 TTTAAATATA
78592234 TATATATTTATTAA-
1 TATATATTTATTAAT
* *
78592248 TATTTAATTTAATAAT
1 TATAT-ATTTATTAAT
78592264 TATATATTTTATTACCAT
1 TATATA-TTTATTA--AT
*
78592282 TATATTTTTATTAA
1 TATATATTTATTAA
78592296 ATTTTGATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
14 4 0.11
15 10 0.26
16 10 0.26
17 7 0.18
18 7 0.18
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TATATATTTATTAAT
Found at i:78596152 original size:29 final size:29
Alignment explanation
Indices: 78596120--78596179 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
78596110 TAAAAGATAA
78596120 AACTTTAAAACAATTTTAAAATTAAGTGC
1 AACTTTAAAACAATTTTAAAATTAAGTGC
*
78596149 AACTTTGAAACAATTTTAAAATTAAGTGC
1 AACTTTAAAACAATTTTAAAATTAAGTGC
78596178 AA
1 AA
78596180 ATGATTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.33
Consensus pattern (29 bp):
AACTTTAAAACAATTTTAAAATTAAGTGC
Found at i:78596201 original size:20 final size:20
Alignment explanation
Indices: 78596178--78596229 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
78596168 AATTAAGTGC
78596178 AAATGATTTTAACCAAGTCA
1 AAATGATTTTAACCAAGTCA
* * * *
78596198 AAATGATTTCAATCATGTTA
1 AAATGATTTTAACCAAGTCA
*
78596218 AAATCATTTTAA
1 AAATGATTTTAA
78596230 ATGTTTTTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.37
Consensus pattern (20 bp):
AAATGATTTTAACCAAGTCA
Found at i:78608111 original size:40 final size:40
Alignment explanation
Indices: 78608056--78608218 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 40
78608046 TGAATGATAC
* * *
78608056 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* **
78608096 CCGGGATAAGACCCGAAGGC-ATTGTGAGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTATAT
* * * ** *
78608135 CTGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
78608175 CCAGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
78608215 CCGG
1 CCGG
78608219 TTAAATCCCG
Statistics
Matches: 95, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
39 31 0.33
40 64 0.67
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:78616125 original size:40 final size:40
Alignment explanation
Indices: 78616070--78616193 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 40
78616060 TGAATGATAC
* * *
78616070 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * ** *
78616110 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
78616150 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
78616190 CCGG
1 CCGG
78616194 TTAAATCCCG
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:78630098 original size:56 final size:56
Alignment explanation
Indices: 78629967--78630099 Score: 203
Period size: 56 Copynumber: 2.4 Consensus size: 56
78629957 TCCCAGACAA
* **
78629967 GGTCTTACTCACACACATAAATTAGAGTCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATAGCAGAGTCACATATCGATGCCAACGTATTAAACGT
* * * *
78630023 GGTCTTACTCGCACACATATCGCGGAGTCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCACACACATATAGCAGAGTCACATATCGATGCCAACGTATTAAACGT
78630079 GGTCTTACTCACACACATATA
1 GGTCTTACTCACACACATATA
78630100 TCGATGCCAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCACACACATATAGCAGAGTCACATATCGATGCCAACGTATTAAACGT
Found at i:78639935 original size:17 final size:17
Alignment explanation
Indices: 78639878--78639926 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
78639868 GTATAATAGG
*
78639878 CCCACATGCCATGTGGA
1 CCCACACGCCATGTGGA
78639895 CCCACACGCCATGTGGA
1 CCCACACGCCATGTGGA
78639912 CCCACACGCC-TGTGG
1 CCCACACGCCATGTGG
78639927 GGCCCACACT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 5 0.16
17 26 0.84
ACGTcount: A:0.20, C:0.41, G:0.24, T:0.14
Consensus pattern (17 bp):
CCCACACGCCATGTGGA
Found at i:78642660 original size:37 final size:37
Alignment explanation
Indices: 78642607--78642743 Score: 256
Period size: 37 Copynumber: 3.7 Consensus size: 37
78642597 CGAATAGTCC
* *
78642607 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
78642644 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
78642681 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
78642718 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
78642744 AGAATATATT
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:78642949 original size:48 final size:48
Alignment explanation
Indices: 78642872--78644335 Score: 1264
Period size: 48 Copynumber: 30.3 Consensus size: 48
78642862 GGTCATTCGG
*
78642872 CCACAATATACATACATCTCCTACATATTTCACACTAGCCATTCGGCTTTA
1 CCAC-ATATACAT--ATCTCATACATATTTCACACTAGCCATTCGGCTTTA
78642923 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
78642971 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* * *
78643019 CCACATGTACATGTCTCATACATATTTCACAGTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
78643067 CCACATGTACATGTCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
**
78643115 CCACATATACACGTCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
78643163 CCACATATACATATCTCATACATATTTCACAGTAGCCATTCGACTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
78643211 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
78643259 CCACATATACATCTCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* * *
78643307 CCACATATACATGTCTCAAAGATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
78643355 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
78643403 CCACATATACATATCTCATACATATTTAACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
78643451 CCACATATACATGTCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* ** * * ** *
78643499 CCACACATATATATATTTATCTTGTACATCAATTTCAGCAATAG-CTTATAAGC--AA
1 -C-CAC--ATATACA--TATCTCATACAT--ATTTCA-CACTAGCCAT-TCGGCTTTA
* * * * ** * * *
78643554 CTCAAATAGTTTCATCAATGTTTACA-ACA-AATTCACA-TATTCACTACAAGCTGTTT
1 C-CACATA---T-A-C-ATATCT-CATACATATTTCACACTAGCCA-TTC-GGCT-TTA
* * * * * * * ** ***
78643610 TC-C-TGA-GCA-ATAGTCACTAAATTATTT-ATAACT-G-GA-GCTACAAAA
1 CCACAT-ATACATAT-CTCA-TACA-TATTTCA-CACTAGCCATTCGGCTTTA
* * * * * *
78643655 CTCA-AAAT-CA-ATTTCCGTTA-AT-TTTC-C-CT-G-AATATAGAC--T-
1 C-CACATATACATATCT-C-ATACATATTTCACACTAGCCAT-TCGGCTTTA
* * * * ** * *
78643695 -CATATAT-CTTCCATC-CATA-AAATTTTCAGA--A--TTTTAGG-TTTGG
1 CCACATATACAT--ATCTCATACATA-TTTCACACTAGCCATTCGGCTTT-A
* * * * * *
78643738 CCA-ATCAATACCAGATTTTTCTTA-A-AGTTTC-CCCT-G--TTTCACTG-TTTGA
1 CCACAT--ATA-C--ATATCTCATACATA-TTTCACACTAGCCATT--CGGCTTT-A
* * * * * * * *
78643787 CTA-ATCTGACCA-CTCTTCACTACAAATTAAATTTCTCATTTGGTCATTCGGC--CA
1 CCACATAT-A-CATATC-TCA-TAC--A-T--ATTTCACA-CTAGCCATTCGGCTTTA
*
78643841 -CA-ATATACATACATCTCCTACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACAT--ATCTCATACATATTTCACACTAGCCATTCGGCTTTA
78643889 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
78643937 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
78643985 CCACATGTACATGTCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
78644033 CCACATGTACATGTCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
78644081 CCACATATACATGTCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
* *
78644129 CCACATATACATGTCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
*
78644177 CCACATATACATGTCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
78644225 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
78644273 CCACATATACATATCTCATACATATTTAACACACTAGCCATTC-GCTTTA
1 CCACATATACATATCTCATACATATTT--CACACTAGCCATTCGGCTTTA
* *
78644322 CCACACATATATAT
1 CCACATATACATAT
78644336 ATTTATCTTG
Statistics
Matches: 1201, Mismatches: 121, Indels: 184
0.80 0.08 0.12
Matches are distributed among these distances:
38 2 0.00
39 7 0.01
40 4 0.00
41 10 0.01
42 2 0.00
43 7 0.01
44 3 0.00
45 5 0.00
46 26 0.02
47 23 0.02
48 943 0.79
49 34 0.03
50 39 0.03
51 9 0.01
52 16 0.01
53 20 0.02
54 18 0.01
55 4 0.00
56 18 0.01
57 8 0.01
58 3 0.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
Found at i:78647317 original size:27 final size:27
Alignment explanation
Indices: 78647277--78647337 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
78647267 TAGAAACAGG
* *
78647277 AATGATCCTTGTCTCAATGATAATCAA
1 AATGGTCCTAGTCTCAATGATAATCAA
78647304 AATGGTCCTAGTCTCAATGATAATCAA
1 AATGGTCCTAGTCTCAATGATAATCAA
78647331 AATGGTC
1 AATGGTC
78647338 AAGATGTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (27 bp):
AATGGTCCTAGTCTCAATGATAATCAA
Found at i:78651387 original size:41 final size:40
Alignment explanation
Indices: 78651209--78651388 Score: 177
Period size: 40 Copynumber: 4.5 Consensus size: 40
78651199 GCTCGATTGT
* * *
78651209 CTTCGGGACATT-GCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
78651249 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
78651289 CTTTGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * *
78651329 CTTCGGGAATT-GACCCGGATTTAGTCATTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGT-AACTCGCACAAATGC
78651370 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
78651389 CACCATTCGA
Statistics
Matches: 114, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 2 0.02
40 82 0.72
41 29 0.25
42 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:78659238 original size:40 final size:41
Alignment explanation
Indices: 78659189--78659342 Score: 145
Period size: 40 Copynumber: 3.8 Consensus size: 41
78659179 CGGAATTTAA
* * * *
78659189 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACATT-GC
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATTAGC
* *
78659229 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGA-ATTAGC
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATTAGC
* * *
78659269 CCGGATT-TAGTAACTCGCACGAATGCCTTCGGGAC-TTAAC
1 CCGG-TTATAGTGACTCGCACGATTGCCTTCGGGACATTAGC
* * * * *
78659309 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGA
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGA
78659343 ATTGACCCGG
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 5 0.05
40 90 0.93
41 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.27
Consensus pattern (41 bp):
CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATTAGC
Found at i:78659285 original size:80 final size:80
Alignment explanation
Indices: 78659201--78659393 Score: 210
Period size: 80 Copynumber: 2.4 Consensus size: 80
78659191 GGATATAGCG
* * * * * * *
78659201 ACTCGCTCGATTGTCTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAAT
1 ACTCGCACGAATGCCTTCGGGAC-TTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAAT
78659265 T-AGCCCGGATTTAGTA
65 TGA-CCCGGATTTAGTA
* *
78659281 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
78659346 GACCCGGATTTAGTCA
66 GACCCGGATTTAGT-A
** * * * *
78659362 TTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGG
78659394 ACACCATTCG
Statistics
Matches: 95, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.02
80 65 0.68
81 28 0.29
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAGTA
Found at i:78659393 original size:41 final size:40
Alignment explanation
Indices: 78659215--78659394 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
78659205 GCTCGATTGT
* * *
78659215 CTTCGGGACATT-GCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
78659255 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
78659295 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * *
78659335 CTTCGGGAATT-GACCCGGATTTAGTCATTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGT-AACTCGCACAAATGC
78659376 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
78659395 CACCATTCGA
Statistics
Matches: 116, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.02
40 84 0.72
41 29 0.25
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:78661376 original size:23 final size:23
Alignment explanation
Indices: 78661346--78661391 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
78661336 AACTTGTGCG
*
78661346 GTCACTGGATGAAGAGTATGTAT
1 GTCACTGGATGAAAAGTATGTAT
78661369 GTCACTGGATGAAAAGTATGTAT
1 GTCACTGGATGAAAAGTATGTAT
78661392 AAATTATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (23 bp):
GTCACTGGATGAAAAGTATGTAT
Found at i:78664889 original size:16 final size:17
Alignment explanation
Indices: 78664849--78664892 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
78664839 TAAAATACAG
**
78664849 ACAATTCATATCATTTAT
1 ACAA-TCATATCATGAAT
78664867 ACAATCATATCATGAAT
1 ACAATCATATCATGAAT
78664884 -CAATCATAT
1 ACAATCATAT
78664893 AATCCCTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 9 0.38
17 11 0.46
18 4 0.17
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.36
Consensus pattern (17 bp):
ACAATCATATCATGAAT
Found at i:78667800 original size:16 final size:17
Alignment explanation
Indices: 78667776--78667815 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
78667766 ATATATATAT
* *
78667776 AAAGTAAAAGAA-ATAA
1 AAAGAAAAAGAATAGAA
78667792 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAGAA
78667809 AAAGAAA
1 AAAGAAA
78667816 GAAAGGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAGAATAGAA
Found at i:78667810 original size:11 final size:10
Alignment explanation
Indices: 78667782--78667819 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
78667772 ATATAAAGTA
78667782 AAAGAAATAA-
1 AAAGAAA-AAG
78667792 AAAGAAAAAG
1 AAAGAAAAAG
78667802 AATAGAAAAAG
1 AA-AGAAAAAG
78667813 AAAGAAA
1 AAAGAAA
78667820 GGATGAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:78667887 original size:24 final size:24
Alignment explanation
Indices: 78667845--78667890 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
78667835 GAGAGCAGGG
*
78667845 GAAAGAAAGAAGGAAGGAAAAAAA
1 GAAAGAAAGAAGAAAGGAAAAAAA
*
78667869 GAAAGAAAGAA-AAAGGGAAAAA
1 GAAAGAAAGAAGAAAGGAAAAAA
78667891 TTGGGATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (24 bp):
GAAAGAAAGAAGAAAGGAAAAAAA
Found at i:78670034 original size:46 final size:46
Alignment explanation
Indices: 78669967--78670058 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
78669957 AGTGTGCTCT
78669967 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
78670013 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
78670059 ATGACAGAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:78670071 original size:46 final size:46
Alignment explanation
Indices: 78669972--78670111 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 46
78669962 GCTCTCTGAT
* *
78669972 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
78670018 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
78670064 A-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCAACATG
78670112 TCAAAGATAA
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
45 1 0.01
46 50 0.60
48 1 0.01
50 31 0.37
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:78673267 original size:17 final size:17
Alignment explanation
Indices: 78673245--78673281 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
78673235 ATCGTTTCCC
*
78673245 AAAAACAAAAGAAGAGA
1 AAAAACAAAAGAAAAGA
*
78673262 AAAAACAAAGGAAAAGA
1 AAAAACAAAAGAAAAGA
78673279 AAA
1 AAA
78673282 CCCCCGGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAGAAAAGA
Found at i:78676231 original size:20 final size:20
Alignment explanation
Indices: 78676185--78676231 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
78676175 AATCCCAAAA
*
78676185 GCACACAGCCGTGTGTAAGG
1 GCACACGGCCGTGTGTAAGG
*
78676205 GCACACGGCTGTGTGTAAGG
1 GCACACGGCCGTGTGTAAGG
78676225 GCACACG
1 GCACACG
78676232 CCCATATGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.23, C:0.26, G:0.36, T:0.15
Consensus pattern (20 bp):
GCACACGGCCGTGTGTAAGG
Found at i:78676643 original size:16 final size:18
Alignment explanation
Indices: 78676617--78676653 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
78676607 ATCGTTTCCC
78676617 AAAAACTAAA-GAAGAGA
1 AAAAACTAAAGGAAGAGA
*
78676634 AAAAAC-AAAGGAATAGA
1 AAAAACTAAAGGAAGAGA
78676651 AAA
1 AAA
78676654 CCCCGGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.73, C:0.05, G:0.16, T:0.05
Consensus pattern (18 bp):
AAAAACTAAAGGAAGAGA
Found at i:78678132 original size:25 final size:25
Alignment explanation
Indices: 78678103--78678172 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
78678093 AGGCTCTTTC
*
78678103 AAGCCATAAAACGATAAGCTCCAGA
1 AAGCCATAAAACGAAAAGCTCCAGA
* * * **
78678128 GAGCCATAGAATGGGAAGCTCCAGA
1 AAGCCATAAAACGAAAAGCTCCAGA
*
78678153 AAGCCAT-TAACGAAAAGCTC
1 AAGCCATAAAACGAAAAGCTC
78678173 ATACGAGCCA
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
24 9 0.26
25 26 0.74
ACGTcount: A:0.43, C:0.23, G:0.21, T:0.13
Consensus pattern (25 bp):
AAGCCATAAAACGAAAAGCTCCAGA
Found at i:78678218 original size:25 final size:25
Alignment explanation
Indices: 78678177--78678247 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 25
78678167 AAGCTCATAC
* * * *
78678177 GAGCCAATAATGAGAAGGTTCAAGT
1 GAGCCAATATTGGGAAGGCTCAAGA
*
78678202 GATCCAATATTGGGAAGGCTCAAGA
1 GAGCCAATATTGGGAAGGCTCAAGA
* *
78678227 GGGCCAATATCGGGAA-GCTCA
1 GAGCCAATATTGGGAAGGCTCA
78678248 TGAAAGAGCC
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 5 0.13
25 33 0.87
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (25 bp):
GAGCCAATATTGGGAAGGCTCAAGA
Found at i:78680465 original size:42 final size:43
Alignment explanation
Indices: 78680416--78680521 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 43
78680406 TATGATTTAT
* *
78680416 GTGTAAGACCATGTCTGGGACA-TCAGCATC-GTATTTAATTTC
1 GTGTAAGACCATGTCTGGGACAGT-AGCATCAATATTTAATTAC
* * *
78680458 GTGTAAGACCTTGTCTGGGACAGTGGCATCAATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTAGCATCAATATTTAATTAC
* *
78680501 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
78680522 GTTGGCATTG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 26 0.48
43 28 0.52
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTAGCATCAATATTTAATTAC
Found at i:78688782 original size:40 final size:40
Alignment explanation
Indices: 78688723--78688930 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
78688713 CAATTGAATG
* * * *
78688723 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
78688763 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
78688803 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
78688843 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
78688883 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
78688923 ATATCCGG
1 ATATCCGG
78688931 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:78688861 original size:80 final size:80
Alignment explanation
Indices: 78688725--78688930 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
78688715 ATTGAATGAT
* * ** * * *
78688725 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
78688789 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
78688805 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
78688870 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
78688885 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
78688931 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:78696079 original size:57 final size:57
Alignment explanation
Indices: 78695986--78696096 Score: 195
Period size: 57 Copynumber: 1.9 Consensus size: 57
78695976 GGTTAGTCCT
* *
78695986 GGACTATTCTTAATGCATGTTTTGGGTCTCGTAGGCCCATAATAGGGACACTATCCC
1 GGACCATTCTTAATGCATGTTTTGGGTCTCATAGGCCCATAATAGGGACACTATCCC
*
78696043 GGACCATTCTTAATGCATGTTTTGGGTCTCATAGGCCCATAATAGGGATACTAT
1 GGACCATTCTTAATGCATGTTTTGGGTCTCATAGGCCCATAATAGGGACACTAT
78696097 GGCGTTTCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (57 bp):
GGACCATTCTTAATGCATGTTTTGGGTCTCATAGGCCCATAATAGGGACACTATCCC
Found at i:78703667 original size:29 final size:28
Alignment explanation
Indices: 78703635--78703713 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 28
78703625 AGAAATTCAA
78703635 AAAAATTATAAAATTATTTTTAAACTATT
1 AAAAATTATAAAATTATTTTTAAACTA-T
* *
78703664 AAAAATTACTAAAATTA-TTTAAAAGTAT
1 AAAAATTA-TAAAATTATTTTTAAACTAT
* *
78703692 AAAAACTATAAAAAATATTTTT
1 AAAAATTAT-AAAATTATTTTT
78703714 TAATTTTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
27 1 0.02
28 14 0.33
29 19 0.45
30 8 0.19
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (28 bp):
AAAAATTATAAAATTATTTTTAAACTAT
Found at i:78704823 original size:12 final size:13
Alignment explanation
Indices: 78704799--78704841 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
78704789 AAGTTTTGGA
78704799 TTTAATATTTGTT
1 TTTAATATTTGTT
78704812 TTTAAT-TTTGTTAT
1 TTTAATATTTG-T-T
*
78704826 TTTAATATTAGTT
1 TTTAATATTTGTT
78704839 TTT
1 TTT
78704842 GTTTTTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 4 0.15
13 11 0.42
14 8 0.31
15 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTAATATTTGTT
Found at i:78706135 original size:20 final size:20
Alignment explanation
Indices: 78706107--78706151 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
78706097 TTATATGCAC
*
78706107 ATTAAT-AAATAATTTAAAAA
1 ATTAATAAAAT-ATTCAAAAA
*
78706127 ATTATTAAAATATTCAAAAA
1 ATTAATAAAATATTCAAAAA
78706147 ATTAA
1 ATTAA
78706152 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
ATTAATAAAATATTCAAAAA
Found at i:78707561 original size:26 final size:24
Alignment explanation
Indices: 78707531--78707580 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
78707521 AAATAAAAAA
*
78707531 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
78707557 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
78707581 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:78707600 original size:21 final size:21
Alignment explanation
Indices: 78707551--78707609 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
78707541 ATAATAAATC
*
78707551 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
78707571 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
78707593 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
78707610 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:78710106 original size:26 final size:27
Alignment explanation
Indices: 78710075--78710172 Score: 121
Period size: 26 Copynumber: 3.7 Consensus size: 27
78710065 CTCCATAAGA
78710075 AACGCCTTTGTGGCGTACTTTT-AA-GG
1 AACGCCTTTGTGGCGTA-TTTTGAATGG
*
78710101 ATCGCCTTTGTGGCGTATTTTGAATGG
1 AACGCCTTTGTGGCGTATTTTGAATGG
* *
78710128 AAAGCCTTT-TGGCGTATTCTGAATGG
1 AACGCCTTTGTGGCGTATTTTGAATGG
* *
78710154 AAAGCCTTTGTGGCATATT
1 AACGCCTTTGTGGCGTATT
78710173 CTAATAGATT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.06
26 43 0.67
27 17 0.27
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (27 bp):
AACGCCTTTGTGGCGTATTTTGAATGG
Found at i:78715859 original size:28 final size:28
Alignment explanation
Indices: 78715790--78715890 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78715780 GACAAGATTG
* * * *
78715790 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
78715820 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
78715848 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
78715877 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78715891 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:78723771 original size:28 final size:28
Alignment explanation
Indices: 78723702--78723802 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78723692 GACAAGATTG
* * * *
78723702 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
78723732 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
78723760 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
78723789 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78723803 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:78726802 original size:86 final size:87
Alignment explanation
Indices: 78726628--78726812 Score: 248
Period size: 86 Copynumber: 2.1 Consensus size: 87
78726618 AATAAAAATA
* * * * * *
78726628 AAAATTGAAT-AAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAAATTTTATTCTATTTTTTT
1 AAAATTAAATAAAATCTGTTTCGAGATTTATTCCCGCCATTCAACAAATTTTATTCTAATATTTG
* *
78726692 ATTTTGTTTCCAAACAATTATT
66 ACTTTGTTTCCAAACAAGTATT
* * *
78726714 AAAATTAAATAAAATCTGTTTCGAGATTTATTCCCGCCATTTAATAGATTTTATT-TAATATTTG
1 AAAATTAAATAAAATCTGTTTCGAGATTTATTCCCGCCATTCAACAAATTTTATTCTAATATTTG
*
78726778 ACTTTGTTTCCAAACGAGTATT
66 ACTTTGTTTCCAAACAAGTATT
78726800 AAAATTAAATAAA
1 AAAATTAAATAAA
78726813 TTCATTTTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
86 47 0.55
87 39 0.45
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (87 bp):
AAAATTAAATAAAATCTGTTTCGAGATTTATTCCCGCCATTCAACAAATTTTATTCTAATATTTG
ACTTTGTTTCCAAACAAGTATT
Found at i:78726821 original size:55 final size:55
Alignment explanation
Indices: 78726761--78726867 Score: 169
Period size: 55 Copynumber: 1.9 Consensus size: 55
78726751 CATTTAATAG
*
78726761 ATTTTATTTAATATTTGACTTTGTTTCCAAACGAGTATTAAAATTAAATAAATTC
1 ATTTTATTCAATATTTGACTTTGTTTCCAAACGAGTATTAAAATTAAATAAATTC
* * * *
78726816 ATTTTATTCCATTTTTTATTTTGTTTCCAAACGAGTATTAAAATTAAATAAA
1 ATTTTATTCAATATTTGACTTTGTTTCCAAACGAGTATTAAAATTAAATAAA
78726868 ATCTGTTTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (55 bp):
ATTTTATTCAATATTTGACTTTGTTTCCAAACGAGTATTAAAATTAAATAAATTC
Found at i:78726918 original size:86 final size:87
Alignment explanation
Indices: 78726816--78727085 Score: 304
Period size: 87 Copynumber: 3.2 Consensus size: 87
78726806 AAATAAATTC
* ** * *
78726816 ATTTTA-TTCCATTTTTTATTTTGTTTCCAAACGAGTATTAAAATTAAATAAAATCTGTTTTGGG
1 ATTTTATTTCGATTTTTTATTTTGTTTCCAAATAAGAATTAAAATTAAATAAAATCTATTTTGGG
* *
78726880 ATTTATTCTCACCGTTCAACAG
66 ATTTATTCCCGCCGTTCAACAG
* ***
78726902 ATTTTATTTC-ATTTTTTATTTTGATGAGAAATAAGAAATTAAAATTAAATAAAATCTATTTTGG
1 ATTTTATTTCGATTTTTTATTTTGTTTCCAAATAAG-AATTAAAATTAAATAAAATCTATTTTGG
* *
78726966 GATTTATTCCCGTCGTTGAACAG
65 GATTTATTCCCGCCGTTCAACAG
* * * *
78726989 ATTTTA-TTCGA-TTTTAATTTTGTTTCCAAATTAGAATT-AAATTGAAT--AATCTATTTCGGG
1 ATTTTATTTCGATTTTTTATTTTGTTTCCAAATAAGAATTAAAATTAAATAAAATCTATTTTGGG
* *
78727049 ATTTATTCCCGCCGTTTAACAT
66 ATTTATTCCCGCCGTTCAACAG
78727071 A-TTTATTTCGATTTT
1 ATTTTATTTCGATTTT
78727086 GTTTCCAAAC
Statistics
Matches: 156, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
81 4 0.03
82 37 0.24
83 3 0.02
84 8 0.05
85 4 0.03
86 45 0.29
87 55 0.35
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (87 bp):
ATTTTATTTCGATTTTTTATTTTGTTTCCAAATAAGAATTAAAATTAAATAAAATCTATTTTGGG
ATTTATTCCCGCCGTTCAACAG
Found at i:78727081 original size:82 final size:79
Alignment explanation
Indices: 78726937--78727085 Score: 210
Period size: 82 Copynumber: 1.8 Consensus size: 79
78726927 GAGAAATAAG
* *
78726937 AAATTAAAATTAAATAAAATCTATTTTGGGATTTATTCCCGTCGTTGAACAGATTTTATTCGATT
1 AAATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTGAACAGATTTTATTCGATT
78727002 TTAATTTTGTTTCC
66 TTAATTTTGTTTCC
* * *
78727016 AAATTAGAATTAAATTGAATAATCTATTTCGGGATTTATTCCCGCCGTTTAACATA-TTTATTTC
1 AAATTAAAATTAAA-T-AA-AATCTATTTCGGGATTTATTCCCGCCGTTGAACAGATTTTA-TTC
78727080 GATTTT
62 GATTTT
78727086 GTTTCCAAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
79 13 0.21
80 1 0.02
81 6 0.10
82 41 0.67
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (79 bp):
AAATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTGAACAGATTTTATTCGATT
TTAATTTTGTTTCC
Found at i:78731078 original size:26 final size:28
Alignment explanation
Indices: 78731031--78731088 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 28
78731021 GATATTTTAA
78731031 ATATAAATTATTTAATTCATTT-TATTTT
1 ATATAAATTATTTAATTCATTTATA-TTT
* *
78731059 ATATAAA-TATTT-GTTTATTTATATTT
1 ATATAAATTATTTAATTCATTTATATTT
78731085 ATAT
1 ATAT
78731089 TTGTTCACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 13 0.48
27 7 0.26
28 7 0.26
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (28 bp):
ATATAAATTATTTAATTCATTTATATTT
Found at i:78731081 original size:20 final size:21
Alignment explanation
Indices: 78731051--78731093 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
78731041 TTTAATTCAT
78731051 TTTATTTTATATAAATATTTG
1 TTTATTTTATATAAATATTTG
**
78731072 TTTA-TTTATATTTATATTTG
1 TTTATTTTATATAAATATTTG
78731092 TT
1 TT
78731094 CACTAATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (21 bp):
TTTATTTTATATAAATATTTG
Found at i:78731405 original size:20 final size:20
Alignment explanation
Indices: 78731382--78731643 Score: 195
Period size: 20 Copynumber: 13.0 Consensus size: 20
78731372 ATCCTTCAAC
*
78731382 AATTTTGAATCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
*
78731402 AATTTTAAATCGAGT-AAAA
1 AATTTTAAATCAAGTGAAAA
*
78731421 CCATTTTAAATCAAGTGAAAA
1 -AATTTTAAATCAAGTGAAAA
* *
78731442 ACATTTTAAATCAAGTGACAC
1 A-ATTTTAAATCAAGTGAAAA
* *
78731463 AGTTTTAAATCAAGGGAAAA
1 AATTTTAAATCAAGTGAAAA
** * * *
78731483 TTTTTTAATTCGAGTGAAAT
1 AATTTTAAATCAAGTGAAAA
*
78731503 AGTTTTAAATCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
* * *
78731523 ACTTTTAAATCGAGTGAAAT
1 AATTTTAAATCAAGTGAAAA
** * *
78731543 TTTTTTGACTCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
** ** * *
78731563 TCGTTTTAAATTGAGTTAAAT
1 -AATTTTAAATCAAGTGAAAA
*
78731584 AGTTTTAAATCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
** *
78731604 TTTTTTAAAT-AGAGTGAAAC
1 AATTTTAAATCA-AGTGAAAA
*
78731624 AATTTTAAATCAGGTGAAAA
1 AATTTTAAATCAAGTGAAAA
78731644 TTTTTTGACC
Statistics
Matches: 185, Mismatches: 51, Indels: 12
0.75 0.21 0.05
Matches are distributed among these distances:
19 5 0.03
20 145 0.78
21 35 0.19
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (20 bp):
AATTTTAAATCAAGTGAAAA
Found at i:78731509 original size:81 final size:80
Alignment explanation
Indices: 78731379--78731682 Score: 283
Period size: 81 Copynumber: 3.8 Consensus size: 80
78731369 TAAATCCTTC
* * ** * * *
78731379 AACAATTTTGAATCAAGTGAAAAAATTTTAAATCGAGTAAAACCA-TTTTAAATCAAGTGAAAAA
1 AACAATTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGAAA-TAGTTTTAAATCAAGTGAAAAA
78731443 CATTTTAAATCAAGTGA
65 C-TTTTAAATCAAGTGA
* *
78731460 CACAGTTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGAAATAGTTTTAAATCAAGTGAAAAAC
1 AACAATTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGAAATAGTTTTAAATCAAGTGAAAAAC
*
78731525 TTTTAAATCGAGTGA
66 TTTTAAATCAAGTGA
*** * * * * *
78731540 AATTTTTTTGACTCAAGTGAAAATCGTTTTAAATT-GAGTTAAATAGTTTTAAATCAAGTGAAAA
1 AACAATTTTAAATCAAGGGAAAAT--TTTTTAATTCGAGTGAAATAGTTTTAAATCAAGTGAAAA
**
78731604 TTTTTTAAAT-AGAGTGA
64 ACTTTTAAATCA-AGTGA
* ** * * *
78731621 AACAATTTTAAATC-AGGTGAAAATTTTTTGACCCAAGTGAAAATGGTTTTAAATCGAGTGAA
1 AACAATTTTAAATCAAGG-GAAAATTTTTTAATTCGAGTG-AAATAGTTTTAAATCAAGTGAA
78731683 TTTTTTTTGA
Statistics
Matches: 180, Mismatches: 36, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
79 5 0.03
80 37 0.21
81 130 0.72
82 8 0.04
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (80 bp):
AACAATTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGAAATAGTTTTAAATCAAGTGAAAAAC
TTTTAAATCAAGTGA
Found at i:78731569 original size:101 final size:101
Alignment explanation
Indices: 78731384--78731727 Score: 274
Period size: 101 Copynumber: 3.4 Consensus size: 101
78731374 CCTTCAACAA
* ** * * * **
78731384 TTTTGAATCAAGTGAAAAAATTTTAAATCGAGT-AAAACCATTTTAAATCAAGTGAAAAACATTT
1 TTTTAAATCAAGTGAAAACGTTTTAAATCAAGTGAAAAAC-TTTTAAATCAGGTG-AAAATTTTT
* ** * *
78731448 TAAATCAAGTG-ACA-CAGTTTTAAATCAAGGGAAAATT
64 TGACCCAAGTGAAAATC-GTTTTAAATCGAGGGAAAATT
* * *
78731485 TTTTAATTCGAGTGAAATA-GTTTTAAATCAAGTGAAAAACTTTTAAATC-GAGTGAAATTTTTT
1 TTTTAAATCAAGTGAAA-ACGTTTTAAATCAAGTGAAAAACTTTTAAATCAG-GTGAAAATTTTT
* * ** *
78731548 TGACTCAAGTGAAAATCGTTTTAAATTGA-GTTAAATAG
64 TGACCCAAGTGAAAATCGTTTTAAATCGAGGGAAAAT-T
**
78731586 TTTTAAATCAAGTGAAAATTTTTTAAAT-AGAGTGAAACAA-TTTTAAATCAGGTGAAAATTTTT
1 TTTTAAATCAAGTGAAAACGTTTTAAATCA-AGTGAAA-AACTTTTAAATCAGGTGAAAATTTTT
* * **
78731649 TGACCCAAGTGAAAATGGTTTTAAATCGAGTGAATTTT
64 TGACCCAAGTGAAAATCGTTTTAAATCGAGGGAAAATT
* * *
78731687 TTTTGACTCAAGTGGAAAACG-TTTAACTCAAGTGAAAAACT
1 TTTTAAATCAAGT-GAAAACGTTTTAAATCAAGTGAAAAACT
78731728 GCTCCCTAAC
Statistics
Matches: 193, Mismatches: 36, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
100 24 0.12
101 151 0.78
102 18 0.09
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (101 bp):
TTTTAAATCAAGTGAAAACGTTTTAAATCAAGTGAAAAACTTTTAAATCAGGTGAAAATTTTTTG
ACCCAAGTGAAAATCGTTTTAAATCGAGGGAAAATT
Found at i:78731644 original size:40 final size:40
Alignment explanation
Indices: 78731379--78731649 Score: 272
Period size: 40 Copynumber: 6.7 Consensus size: 40
78731369 TAAATCCTTC
* ** *
78731379 AACAATTTTGAATCAAGTGAAAAAATTTTAAATCGAGTAA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCGAGTGA
* ** *
78731419 AACCATTTTAAATCAAGTGAAAAACATTTTAAATCAAGTGA
1 AACAATTTTAAATCAAGTG-AAAATTTTTTAAATCGAGTGA
* * * *
78731460 CACAGTTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCGAGTGA
* * **
78731500 AATAGTTTTAAATCAAGTGAAAAACTTTTAAATCGAGTGA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCGAGTGA
*** * * * * *
78731540 AATTTTTTTGACTCAAGTGAAAATCGTTTTAAATTGAGTTA
1 AACAATTTTAAATCAAGTGAAAAT-TTTTTAAATCGAGTGA
* * *
78731581 AATAGTTTTAAATCAAGTGAAAATTTTTTAAATAGAGTGA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCGAGTGA
*
78731621 AACAATTTTAAATCAGGTGAAAATTTTTT
1 AACAATTTTAAATCAAGTGAAAATTTTTT
78731650 GACCCAAGTG
Statistics
Matches: 192, Mismatches: 37, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
40 126 0.66
41 66 0.34
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (40 bp):
AACAATTTTAAATCAAGTGAAAATTTTTTAAATCGAGTGA
Found at i:78731649 original size:20 final size:20
Alignment explanation
Indices: 78731424--78731675 Score: 108
Period size: 20 Copynumber: 12.4 Consensus size: 20
78731414 AGTAAAACCA
* **
78731424 TTTTAAATCAAGTGAAAAACA
1 TTTTAAATCAGGTG-AAAATG
* *
78731445 TTTTAAATCAAGTGACACA-G
1 TTTTAAATCAGGTGA-AAATG
*
78731465 TTTTAAATCAAGG-GAAAATT
1 TTTTAAATC-AGGTGAAAATG
*
78731485 TTTTAATTC-GAGTG-AAATAG
1 TTTTAAATCAG-GTGAAAAT-G
* **
78731505 TTTTAAATCAAGTGAAAAAC
1 TTTTAAATCAGGTGAAAATG
* *
78731525 TTTTAAATC-GAGTGAAATTT
1 TTTTAAATCAG-GTGAAAATG
* * *
78731545 TTTTGACTCAAGTGAAAATCG
1 TTTTAAATCAGGTGAAAAT-G
* *
78731566 TTTTAAAT-TGAGT-TAAATAG
1 TTTTAAATCAG-GTGAAAAT-G
* *
78731586 TTTTAAATCAAGTGAAAATT
1 TTTTAAATCAGGTGAAAATG
*
78731606 TTTTAAAT-AGAGTGAAACA-A
1 TTTTAAATCAG-GTGAAA-ATG
*
78731626 TTTTAAATCAGGTGAAAATT
1 TTTTAAATCAGGTGAAAATG
* ** *
78731646 TTTTGACCCAAGTGAAAATGG
1 TTTTAAATCAGGTGAAAAT-G
78731667 TTTTAAATC
1 TTTTAAATC
78731676 GAGTGAATTT
Statistics
Matches: 171, Mismatches: 41, Indels: 38
0.68 0.16 0.15
Matches are distributed among these distances:
18 1 0.01
19 9 0.05
20 119 0.70
21 42 0.25
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (20 bp):
TTTTAAATCAGGTGAAAATG
Found at i:78731660 original size:121 final size:121
Alignment explanation
Indices: 78731379--78731662 Score: 307
Period size: 121 Copynumber: 2.3 Consensus size: 121
78731369 TAAATCCTTC
* * * * * *** * *
78731379 AACAATTTTGAATCAAGTGAAAAAATTTTAAATCGAGTAAAACCATTTTAAATCAAGTGAAAAAC
1 AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAATTTTTTTGACTCAAGTGAAAAAC
* * *
78731444 ATTTTAAATCAAGTGACACAGTTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGA
66 ATTTTAAATCAAGTGAAACAGTTTTAAATCAAGGGAAAATTTTTTAAATAGAGTGA
* * * * *
78731500 AATAGTTTTAAATCAAGTGAAAAACTTTTAAATCGAGTGAAATTTTTTTGACTCAAGTGAAAATC
1 AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAATTTTTTTGACTCAAGTGAAAAAC
* ** * * *
78731565 GTTTTAAATTGAGTTAAATAGTTTTAAATCAAGTGAAAATTTTTTAAATAGAGTGA
66 ATTTTAAATCAAGTGAAACAGTTTTAAATCAAGGGAAAATTTTTTAAATAGAGTGA
* ** * *
78731621 AACAATTTTAAATCAGGTGAAAATTTTTTGACCCAAGTGAAA
1 AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAA
78731663 ATGGTTTTAA
Statistics
Matches: 134, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
121 134 1.00
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.34
Consensus pattern (121 bp):
AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAATTTTTTTGACTCAAGTGAAAAAC
ATTTTAAATCAAGTGAAACAGTTTTAAATCAAGGGAAAATTTTTTAAATAGAGTGA
Found at i:78731671 original size:41 final size:42
Alignment explanation
Indices: 78731626--78731705 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
78731616 AGTGAAACAA
78731626 TTTTAAATC-AGGTGAAAATTTTTTGACCCAAGT-GAAAATGG
1 TTTTAAATCGA-GTGAAAATTTTTTGACCCAAGTGGAAAATGG
** *
78731667 TTTTAAATCGAGTGAATTTTTTTTGACTCAAGTGGAAAA
1 TTTTAAATCGAGTGAAAATTTTTTGACCCAAGTGGAAAA
78731706 CGTTTAACTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 28 0.82
42 6 0.18
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.38
Consensus pattern (42 bp):
TTTTAAATCGAGTGAAAATTTTTTGACCCAAGTGGAAAATGG
Found at i:78732328 original size:21 final size:21
Alignment explanation
Indices: 78732302--78732360 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
78732292 ATTATTTAAA
78732302 TATTTTATATTAAATTATTAT
1 TATTTTATATTAAATTATTAT
*
78732323 TATTTTGATGA--AAAATATTAT
1 TATTTT-AT-ATTAAATTATTAT
* *
78732344 TCTTTAATATTAAATTA
1 TATTTTATATTAAATTA
78732361 GTTTAAGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
19 1 0.03
20 2 0.07
21 24 0.80
22 2 0.07
23 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (21 bp):
TATTTTATATTAAATTATTAT
Found at i:78733865 original size:28 final size:29
Alignment explanation
Indices: 78733832--78733887 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
78733822 CTCTAATTTC
* *
78733832 TTTCATGAA-TTTAGTTTTTATATTTTAA
1 TTTCATCAATTTTAGTGTTTATATTTTAA
78733860 TTTCATCAATTTTTAGTGTTTATATTTT
1 TTTCATCAA-TTTTAGTGTTTATATTTT
78733888 TTTTAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
30 16 0.67
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62
Consensus pattern (29 bp):
TTTCATCAATTTTAGTGTTTATATTTTAA
Found at i:78735434 original size:17 final size:17
Alignment explanation
Indices: 78735414--78735515 Score: 55
Period size: 18 Copynumber: 5.6 Consensus size: 17
78735404 AGTAGAAGAG
*
78735414 AAGAGAAGAAAA-AAGAA
1 AAGAAAAGAAAAGAA-AA
78735431 AAGAAAAGAAAAGAAAA
1 AAGAAAAGAAAAGAAAA
***
78735448 AAGGATAAAGATGGGAAAAA
1 AA-GA-AAAGAAAAG-AAAA
* *
78735468 AAGAAAATAAAGGAAATA
1 AAGAAAAGAAAAGAAA-A
*
78735486 AAGAAAGGAAACTAGAAAGA
1 AAGAAAAGAAA--AGAAA-A
78735506 AA-AAAAGAAA
1 AAGAAAAGAAA
78735516 GAAGGAAAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
17 18 0.27
18 20 0.30
19 15 0.23
20 13 0.20
ACGTcount: A:0.73, C:0.01, G:0.22, T:0.05
Consensus pattern (17 bp):
AAGAAAAGAAAAGAAAA
Found at i:78735434 original size:22 final size:22
Alignment explanation
Indices: 78735409--78735450 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
78735399 GGGTTAGTAG
* *
78735409 AAGAGAAGAGAAGAAAAAAGAA
1 AAGAAAAGAAAAGAAAAAAGAA
78735431 AAGAAAAGAAAAGAAAAAAG
1 AAGAAAAGAAAAGAAAAAAG
78735451 GATAAAGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (22 bp):
AAGAAAAGAAAAGAAAAAAGAA
Found at i:78735482 original size:18 final size:18
Alignment explanation
Indices: 78735429--78735496 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
78735419 AAGAAAAAAG
*
78735429 AAAAGAAAAGAAAAGAAA
1 AAAAGAAAAGAAAGGAAA
* **
78735447 AAAGGATAAAGATGGGAAA
1 AAAAGA-AAAGAAAGGAAA
*
78735466 AAAAGAAAATAAAGGAAA
1 AAAAGAAAAGAAAGGAAA
* *
78735484 TAAAGAAAGGAAA
1 AAAAGAAAAGAAA
78735497 CTAGAAAGAA
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
18 24 0.63
19 14 0.37
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (18 bp):
AAAAGAAAAGAAAGGAAA
Found at i:78737863 original size:15 final size:15
Alignment explanation
Indices: 78737843--78737872 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
78737833 ACTCAAAGTA
78737843 AGGCACCATCGAGAC
1 AGGCACCATCGAGAC
78737858 AGGCACCATCGAGAC
1 AGGCACCATCGAGAC
78737873 CGATAGGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.27, T:0.07
Consensus pattern (15 bp):
AGGCACCATCGAGAC
Found at i:78739411 original size:26 final size:27
Alignment explanation
Indices: 78739360--78739411 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
78739350 TAAATTATCT
* *
78739360 TTGAGTTTTTCTTTTCAAGAATTTTTC
1 TTGAGTTTTTCTTTTAAAGAAGTTTTC
78739387 TTGAG-TTTTCTTTTAAA-AGAGTTTT
1 TTGAGTTTTTCTTTTAAAGA-AGTTTT
78739412 AATAATCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 1 0.05
26 16 0.73
27 5 0.23
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.58
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTAAAGAAGTTTTC
Found at i:78742752 original size:24 final size:24
Alignment explanation
Indices: 78742725--78742858 Score: 101
Period size: 24 Copynumber: 5.5 Consensus size: 24
78742715 AGAAATTTCA
* *
78742725 GCACTATGTGTGCGAGGTTATGTG
1 GCACTATGTGTGCGAGATTATATG
* * * *
78742749 GCACTATGTGTGCAAAAACTACATG
1 GCACTATGTGTGC-GAGATTATATG
*
78742774 GCACTATGTGTGCGAGATTATATA
1 GCACTATGTGTGCGAGATTATATG
* * * *
78742798 GCACTATGTGTGTGAGGA-AACACG
1 GCACTATGTGTGCGA-GATTATATG
* *
78742822 GCACTATGTGTGCGA-ATGAGTAAG
1 GCACTATGTGTGCGAGATTA-TATG
78742846 AGCACTATGTGTG
1 -GCACTATGTGTG
78742859 TGGACCTTTA
Statistics
Matches: 85, Mismatches: 20, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 51 0.60
25 32 0.38
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (24 bp):
GCACTATGTGTGCGAGATTATATG
Found at i:78755385 original size:29 final size:29
Alignment explanation
Indices: 78755353--78755425 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
78755343 CTTCGAGCTC
*
78755353 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
78755382 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
78755411 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
78755426 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:78757552 original size:59 final size:60
Alignment explanation
Indices: 78757437--78757553 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 60
78757427 AAGTGATTAT
* * * * * *
78757437 CTTAATATTAAATTTAATTTAATTTTTATGTTGTACATAAATATTCTATTATTTTAATGAGA
1 CTTAATATTAAATTTAATCTAATATGTATCTTG-A-ATAAATATTATATTAATTTAATGAGA
78757499 CTTAATATTAAATTTAATCTAATATGTATCTTG-ATAAATATTATATTAATTTAAT
1 CTTAATATTAAATTTAATCTAATATGTATCTTGAATAAATATTATATTAATTTAAT
78757554 TTTAAAGTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 20 0.41
62 29 0.59
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (60 bp):
CTTAATATTAAATTTAATCTAATATGTATCTTGAATAAATATTATATTAATTTAATGAGA
Found at i:78761804 original size:24 final size:24
Alignment explanation
Indices: 78761777--78761825 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
78761767 TCACCATTTC
*
78761777 ATTTA-ACATAAAACTCATTGTTTT
1 ATTTAGAC-TAAAACTCATCGTTTT
78761801 ATTTAGACTAAAACTCATCGTTTT
1 ATTTAGACTAAAACTCATCGTTTT
78761825 A
1 A
78761826 ATAATAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (24 bp):
ATTTAGACTAAAACTCATCGTTTT
Found at i:78765723 original size:29 final size:30
Alignment explanation
Indices: 78765690--78765754 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
78765680 AAGAAATTTC
*
78765690 AAATTAGGGGGTTAAAT-TGAGAAA-AATGA
1 AAATTACGGGG-TAAATGTGAGAAATAATGA
* *
78765719 AAATTACGTGGTAAATGTGTGAAATAATGA
1 AAATTACGGGGTAAATGTGAGAAATAATGA
78765749 AAATTA
1 AAATTA
78765755 TGGGCTGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 5 0.16
29 15 0.48
30 11 0.35
ACGTcount: A:0.48, C:0.02, G:0.23, T:0.28
Consensus pattern (30 bp):
AAATTACGGGGTAAATGTGAGAAATAATGA
Found at i:78770652 original size:22 final size:22
Alignment explanation
Indices: 78770627--78770672 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
78770617 CAGGAACAAG
78770627 TGGTATGCACATATTAAAACAT
1 TGGTATGCACATATTAAAACAT
78770649 TGGTATGCACATATTAAAACAT
1 TGGTATGCACATATTAAAACAT
78770671 TG
1 TG
78770673 TCAACCAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (22 bp):
TGGTATGCACATATTAAAACAT
Found at i:78771186 original size:15 final size:15
Alignment explanation
Indices: 78771166--78771197 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
78771156 TATGAAATTT
78771166 ACACAACATACCTTG
1 ACACAACATACCTTG
78771181 ACACAACATACCTTG
1 ACACAACATACCTTG
78771196 AC
1 AC
78771198 TTTAAACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.34, G:0.06, T:0.19
Consensus pattern (15 bp):
ACACAACATACCTTG
Found at i:78772364 original size:31 final size:30
Alignment explanation
Indices: 78772233--78772378 Score: 132
Period size: 31 Copynumber: 4.8 Consensus size: 30
78772223 TATGACGACC
* * *
78772233 AACACCAATATATAGTACATGATAAGATATA
1 AACACCGATACATAGTACCTGATAA-ATATA
* *
78772264 AACACCGACACATAGTTCCTGATACAATATA
1 AACACCGATACATAGTACCTGATA-AATATA
* *
78772295 AACACCGATACAAAGTACCTAAT-AATATA
1 AACACCGATACATAGTACCTGATAAATATA
** * *
78772324 GTCATCGGTACATAGTACCTGATAATATATA
1 AACACCGATACATAGTACCTGATAA-ATATA
* * *
78772355 ATCAGCGGTACATAGTACCTGATA
1 AACACCGATACATAGTACCTGATA
78772379 CTTTAAAACC
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
29 23 0.24
30 1 0.01
31 70 0.74
32 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.25
Consensus pattern (30 bp):
AACACCGATACATAGTACCTGATAAATATA
Found at i:78775505 original size:20 final size:20
Alignment explanation
Indices: 78775480--78775520 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
78775470 ATTTCTAAAC
*
78775480 TTCAAAATATACAATTAACA
1 TTCAAAAGATACAATTAACA
* *
78775500 TTCAAAAGCTTCAATTAACA
1 TTCAAAAGATACAATTAACA
78775520 T
1 T
78775521 CAATAAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (20 bp):
TTCAAAAGATACAATTAACA
Found at i:78776102 original size:92 final size:92
Alignment explanation
Indices: 78775992--78776188 Score: 277
Period size: 92 Copynumber: 2.1 Consensus size: 92
78775982 ATTGCCTCAC
* * * * *
78775992 TGTTTTGCTGTTGGTTGTTTTTAGTTTAAACTGCTAATTGTTGTATTGTTTCAGTACTGTTATTT
1 TGTTTTGCTGCTGATTGTTTTTAGTTTAAACTGCCAATTGCTGTATTATTTCAGTACTGTTATTT
* *
78776057 TCGGCTTAAAATTGCTGAATGTTAGAA
66 TCAGCTTAAAATAGCTGAATGTTAGAA
* * *
78776084 TGTTTTGTTGCTGATTGTTTTTAGTTTAAACTGCCGATTGCTGTATTATTTCATTACTGTTATTT
1 TGTTTTGCTGCTGATTGTTTTTAGTTTAAACTGCCAATTGCTGTATTATTTCAGTACTGTTATTT
* **
78776149 TTAGCTTAAAATAGCTGAATGTTAGGC
66 TCAGCTTAAAATAGCTGAATGTTAGAA
78776176 TGTTTTGCTGCTG
1 TGTTTTGCTGCTG
78776189 TTAATTTTAC
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (92 bp):
TGTTTTGCTGCTGATTGTTTTTAGTTTAAACTGCCAATTGCTGTATTATTTCAGTACTGTTATTT
TCAGCTTAAAATAGCTGAATGTTAGAA
Found at i:78776241 original size:91 final size:92
Alignment explanation
Indices: 78776036--78776241 Score: 234
Period size: 92 Copynumber: 2.2 Consensus size: 92
78776026 TAATTGTTGT
* ** * * *
78776036 ATTGTTTCAGTACTGTTATTTTCGGCTTAAAATTGCTGAATGTTAGAATGTTTTGTTGCTGATTG
1 ATTGTTTCATTACTGTTATTTTTAGCTTAAAATAGCTGAATGTTAGAATGTTTTGCTGCTGATTA
* * ** **
78776101 TTTTTAGTTTAAACTGCCGATTGCTGT
66 ATTTTACTGGAAACTGCCGATTGCTAC
* **
78776128 ATTATTTCATTACTGTTATTTTTAGCTTAAAATAGCTGAATGTTAGGCTGTTTTGCTGCTG-TTA
1 ATTGTTTCATTACTGTTATTTTTAGCTTAAAATAGCTGAATGTTAGAATGTTTTGCTGCTGATTA
* *
78776192 ATTTTACTGGAAACTTCCGATTGTTAC
66 ATTTTACTGGAAACTGCCGATTGCTAC
* *
78776219 ATTGCTTCATTACTGCTATTTTT
1 ATTGTTTCATTACTGTTATTTTT
78776242 GGTTTAAGAT
Statistics
Matches: 94, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
91 41 0.44
92 53 0.56
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (92 bp):
ATTGTTTCATTACTGTTATTTTTAGCTTAAAATAGCTGAATGTTAGAATGTTTTGCTGCTGATTA
ATTTTACTGGAAACTGCCGATTGCTAC
Found at i:78780539 original size:29 final size:29
Alignment explanation
Indices: 78780506--78780562 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
78780496 TCCACCTTGA
* * *
78780506 CACGAATTCTTAACGAACAAGTTTTTCAT
1 CACGAACTCTCAACGAACAAGTTCTTCAT
*
78780535 CACGAACTCTCAATGAACAAGTTCTTCA
1 CACGAACTCTCAACGAACAAGTTCTTCA
78780563 CCCATTCCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.30
Consensus pattern (29 bp):
CACGAACTCTCAACGAACAAGTTCTTCAT
Found at i:78792590 original size:44 final size:45
Alignment explanation
Indices: 78792502--78792590 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
78792492 CAGAACGAAA
*
78792502 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
78792548 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
78792591 ATAATTCGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:78792603 original size:44 final size:45
Alignment explanation
Indices: 78792504--78792628 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 45
78792494 GAACGAAATG
* * *
78792504 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATA
*
78792550 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATA
** * * * *
78792594 ATTCGTGTAAGTCCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
78792629 CAGGATATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.53
45 1 0.02
46 30 0.45
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATA
Found at i:78796833 original size:68 final size:70
Alignment explanation
Indices: 78796761--78796958 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
78796751 ACACCCTGTA
* * * *
78796761 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
78796823 ATAAAT
65 ATAAAT
*
78796829 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
78796894 ATAAAT
65 ATAAAT
*
78796900 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
78796959 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:78796872 original size:41 final size:41
Alignment explanation
Indices: 78796827--78796944 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78796817 TGAAAGATAA
78796827 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78796868 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78796898 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78796939 ATGTAG
1 ATGTAG
78796945 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78796884 original size:71 final size:71
Alignment explanation
Indices: 78796795--78796958 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78796785 GAGATGTATC
78796795 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78796860 AGGACA
66 AGGACA
78796866 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78796931 AGGACA
66 AGGACA
78796937 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78796959 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78804403 original size:68 final size:70
Alignment explanation
Indices: 78804331--78804528 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
78804321 ACACCCTGTA
* * * *
78804331 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
78804393 ATAAAT
65 ATAAAT
*
78804399 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
78804464 ATAAAT
65 ATAAAT
*
78804470 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
78804529 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:78804442 original size:41 final size:41
Alignment explanation
Indices: 78804397--78804514 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
78804387 TGAAAGATAA
78804397 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
78804438 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78804468 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
78804509 ATGTAG
1 ATGTAG
78804515 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:78804454 original size:71 final size:71
Alignment explanation
Indices: 78804365--78804528 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78804355 GAGATGTATC
78804365 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78804430 AGGACA
66 AGGACA
78804436 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
78804501 AGGACA
66 AGGACA
78804507 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
78804529 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:78808878 original size:44 final size:45
Alignment explanation
Indices: 78808788--78808916 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
78808778 GACAGAACGA
*
78808788 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
78808834 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
78808878 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
78808917 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:78812712 original size:22 final size:22
Alignment explanation
Indices: 78812687--78812730 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
78812677 GTGTTGTGTA
78812687 ACTGTGAGGTCTGAGGTTCAAG
1 ACTGTGAGGTCTGAGGTTCAAG
78812709 ACTGTGAGGTCTGAGGTTCAAG
1 ACTGTGAGGTCTGAGGTTCAAG
78812731 TCTTGGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (22 bp):
ACTGTGAGGTCTGAGGTTCAAG
Found at i:78813259 original size:27 final size:27
Alignment explanation
Indices: 78813106--78813237 Score: 129
Period size: 27 Copynumber: 4.9 Consensus size: 27
78813096 TGTAGGGTAG
* * * **
78813106 AATTACTGAAATGCCCCTGGTTTATAA
1 AATTACCGAAATACCCTTGGTTTGGAA
* ** **
78813133 AATTACCGAAATACCCTCGACTTATAA
1 AATTACCGAAATACCCTTGGTTTGGAA
* * *
78813160 AATTACCGAAATACCCCTGATTTGGGA
1 AATTACCGAAATACCCTTGGTTTGGAA
*
78813187 AGTTACCGAAATACCCTTGGTTTGGAA
1 AATTACCGAAATACCCTTGGTTTGGAA
*
78813214 AATTATCGAAATACCCTTGGTTTG
1 AATTACCGAAATACCCTTGGTTTG
78813238 TAGATTTACC
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGGTTTGGAA
Found at i:78813542 original size:41 final size:41
Alignment explanation
Indices: 78813497--78813617 Score: 188
Period size: 41 Copynumber: 3.0 Consensus size: 41
78813487 GGAGGAAGAA
* *
78813497 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCATTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
*
78813538 ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
* * *
78813579 ATTAAGGATCGCATGGTTGCTTGATGATCGTGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
78813618 CGGTGGCTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
Found at i:78816571 original size:27 final size:27
Alignment explanation
Indices: 78816552--78816643 Score: 150
Period size: 27 Copynumber: 3.4 Consensus size: 27
78816542 GTAGACTAGT
78816552 ATTACTGAAATACTCCTGTAGGGTAGA
1 ATTACTGAAATACTCCTGTAGGGTAGA
*
78816579 ATTACTGAAATACTCCTGTATGGTAGA
1 ATTACTGAAATACTCCTGTAGGGTAGA
*
78816606 ATTATTGAAATAAC-CCTGTAGGGTAGA
1 ATTACTGAAAT-ACTCCTGTAGGGTAGA
78816633 ATTACTGAAAT
1 ATTACTGAAAT
78816644 GCCCCTGGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 58 0.97
28 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (27 bp):
ATTACTGAAATACTCCTGTAGGGTAGA
Found at i:78816663 original size:54 final size:54
Alignment explanation
Indices: 78816552--78816672 Score: 156
Period size: 54 Copynumber: 2.2 Consensus size: 54
78816542 GTAGACTAGT
* *
78816552 ATTACTGAAATACTCCTGTAGGGTAGAATTACTGAAATACTCCTGTATGGTAGA
1 ATTACTGAAATACTCCTGTAGGGTAGAATTACTGAAATACCCCTGTATGGTAAA
* * *
78816606 ATTATTGAAATAAC-CCTGTAGGGTAGAATTACTGAAATGCCCCTGGT-TTGTAAA
1 ATTACTGAAAT-ACTCCTGTAGGGTAGAATTACTGAAATACCCCT-GTATGGTAAA
*
78816660 ATTACCGAAATAC
1 ATTACTGAAATAC
78816673 CCTCGACCTG
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
53 2 0.03
54 52 0.90
55 4 0.07
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (54 bp):
ATTACTGAAATACTCCTGTAGGGTAGAATTACTGAAATACCCCTGTATGGTAAA
Found at i:78816961 original size:27 final size:27
Alignment explanation
Indices: 78816632--78816973 Score: 265
Period size: 27 Copynumber: 12.7 Consensus size: 27
78816622 TGTAGGGTAG
* * * *
78816632 AATTACTGAAATGCCCCTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* **
78816659 AATTACCGAAATACCCTCGACCTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
** ** *
78816686 AATTATTGAAATACCCTCAACTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
78816713 AATTACCAAAATACCCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * *
78816740 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCGAAATACCCTTGATTTGTAA
* ** **
78816767 AATTACTGAAATACCCTCAACCTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* **
78816794 AATTACCGAAATACCCTCGACCTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
78816821 AATTACCGAAATACCC-TGATTTAG-AA
1 AATTACCGAAATACCCTTGATTT-GTAA
* * *
78816847 AGTTACCGAAATACCCTTGAATTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * **
78816874 AATTACAGAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * * * *
78816901 AATTGCAGAAATAACATTGGTTTGCAA
1 AATTACCGAAATACCCTTGATTTGTAA
*
78816928 AATTACCGAAATACCCTTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
78816955 ATTTACCAAAACACCCTTG
1 AATTACCGAAATACCCTTG
78816974 TAGGATAAAA
Statistics
Matches: 256, Mismatches: 56, Indels: 6
0.81 0.18 0.02
Matches are distributed among these distances:
26 21 0.08
27 235 0.92
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGTAA
Found at i:78817248 original size:41 final size:41
Alignment explanation
Indices: 78817191--78817315 Score: 187
Period size: 41 Copynumber: 3.0 Consensus size: 41
78817181 AGAAGAAGAA
* * * * *
78817191 ATTGAGAATCGCATGGTTGCTTGACGACCATGGATCTACTG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
*
78817232 ATTGAGGATCACATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
*
78817273 ATTAAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
78817314 AT
1 AT
78817316 GGCTTTTAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
Done.