Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 264 of 328
Found at i:78826389 original size:18 final size:19
Alignment explanation
Indices: 78826361--78826396 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
78826351 TCAAAAATCA
78826361 ATTTTTGTTGAAGTTTTTT
1 ATTTTTGTTGAAGTTTTTT
78826380 ATTTTT-TTGAAGTTTTT
1 ATTTTTGTTGAAGTTTTT
78826397 GGTTCCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (19 bp):
ATTTTTGTTGAAGTTTTTT
Found at i:78828032 original size:22 final size:21
Alignment explanation
Indices: 78828000--78828040 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
78827990 AAATCACTTC
78828000 TCAATTTCCAATCAATACACAAT
1 TCAATTTCCAAT-AAT-CACAAT
78828023 TCAA-TTCCAATAATCACA
1 TCAATTTCCAATAATCACA
78828041 TATACTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 7 0.39
23 4 0.22
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (21 bp):
TCAATTTCCAATAATCACAAT
Found at i:78828080 original size:13 final size:13
Alignment explanation
Indices: 78828062--78828089 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78828052 TTCAGCTCAA
78828062 TTCAATTTTCATT
1 TTCAATTTTCATT
78828075 TTCAATTTTCATT
1 TTCAATTTTCATT
78828088 TT
1 TT
78828090 TTAATACAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTCAATTTTCATT
Found at i:78831264 original size:12 final size:12
Alignment explanation
Indices: 78831233--78831257 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78831223 AATTTCTCCT
78831233 TCTTTTTCTTTC
1 TCTTTTTCTTTC
78831245 TCTTTTTCTTTC
1 TCTTTTTCTTTC
78831257 T
1 T
78831258 TTCTTTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:78831355 original size:5 final size:5
Alignment explanation
Indices: 78831347--78831371 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
78831337 TTATTAAACA
78831347 AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT
78831372 TATTTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:78831380 original size:4 final size:4
Alignment explanation
Indices: 78831371--78831395 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
78831361 TAATATAATA
78831371 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
78831396 CTTAAATACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:78831524 original size:5 final size:5
Alignment explanation
Indices: 78831509--78831544 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
78831499 ATTTTATATT
78831509 TATAA TAATAA TATAA TATAA TATATA TATAA TATA
1 TATAA T-ATAA TATAA TATAA TATA-A TATAA TATA
78831545 TTTACTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 19 0.66
6 10 0.34
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:78831530 original size:16 final size:16
Alignment explanation
Indices: 78831509--78831544 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
78831499 ATTTTATATT
78831509 TATAATA-ATAATATAA
1 TATAATATAT-ATATAA
78831525 TATAATATATATATAA
1 TATAATATATATATAA
78831541 TATA
1 TATA
78831545 TTTACTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.89
17 2 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TATAATATATATATAA
Found at i:78836330 original size:39 final size:39
Alignment explanation
Indices: 78836276--78836419 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
78836266 GAATGTTCGA
78836276 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
78836315 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
78836354 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
78836393 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
78836420 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:78836366 original size:78 final size:79
Alignment explanation
Indices: 78836277--78836459 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
78836267 AATGTTCGAG
78836277 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
78836341 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
78836355 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
78836420 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
78836434 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
78836460 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:78838363 original size:42 final size:42
Alignment explanation
Indices: 78838304--78838392 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
78838294 CAGTACATGG
*
78838304 CCGTGTGACAGAGGCACACGC-CTGTGTGGTTCAGGGACACGA
1 CCGTGTGACAGAGGCACAAGCTC-GTGTGGTTCAGGGACACGA
* *
78838346 CCGTGTGATAGAGGCACAAGCTCGTGTGGTTTAGGGACACGA
1 CCGTGTGACAGAGGCACAAGCTCGTGTGGTTCAGGGACACGA
78838388 CCGTG
1 CCGTG
78838393 CGAACAGGCC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 42 0.98
43 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.19
Consensus pattern (42 bp):
CCGTGTGACAGAGGCACAAGCTCGTGTGGTTCAGGGACACGA
Found at i:78838392 original size:21 final size:20
Alignment explanation
Indices: 78838319--78838392 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
78838309 TGACAGAGGC
78838319 ACACGCCTGTGTGGTTCAGGG
1 ACACGCC-GTGTGGTTCAGGG
* ** *
78838340 ACACGACCGTGTGATAGAGGC
1 ACACG-CCGTGTGGTTCAGGG
* *
78838361 ACAAGCTCGTGTGGTTTAGGG
1 ACACGC-CGTGTGGTTCAGGG
78838382 ACACGACCGTG
1 ACACG-CCGTG
78838393 CGAACAGGCC
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
20 1 0.03
21 36 0.90
22 3 0.08
ACGTcount: A:0.22, C:0.23, G:0.35, T:0.20
Consensus pattern (20 bp):
ACACGCCGTGTGGTTCAGGG
Found at i:78839104 original size:25 final size:24
Alignment explanation
Indices: 78839056--78839104 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
78839046 AAAAACGTTC
*
78839056 TAGAAAAACAAAATAAAACCAAAA
1 TAGAAAAACAAAATAAAAACAAAA
* *
78839080 TAGAAAATACCAAATAAAAATAAAA
1 TAGAAAA-ACAAAATAAAAACAAAA
78839105 ATAAGGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.73, C:0.10, G:0.04, T:0.12
Consensus pattern (24 bp):
TAGAAAAACAAAATAAAAACAAAA
Found at i:78841745 original size:28 final size:28
Alignment explanation
Indices: 78841713--78841809 Score: 178
Period size: 28 Copynumber: 3.5 Consensus size: 28
78841703 TCGTAGATCA
78841713 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78841741 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78841769 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
78841797 CGATA-TACCCCTA
1 CGAAATTACCCCTA
78841810 GGGTTTTAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 8 0.12
28 60 0.88
ACGTcount: A:0.44, C:0.27, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:78849789 original size:28 final size:28
Alignment explanation
Indices: 78849757--78849853 Score: 169
Period size: 28 Copynumber: 3.5 Consensus size: 28
78849747 GCGTAGATCA
78849757 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
78849785 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
78849813 CGAAATTACCCTTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
78849841 CGATA-TACCCCTA
1 CGAAATTACCCCTA
78849854 GGGTTTTAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 7 0.11
28 59 0.89
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:78854750 original size:14 final size:14
Alignment explanation
Indices: 78854731--78854760 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
78854721 TAGTCTCTTT
78854731 TTCTTTTTCTTTTA
1 TTCTTTTTCTTTTA
78854745 TTCTTTTTCTTTTA
1 TTCTTTTTCTTTTA
78854759 TT
1 TT
78854761 ATTAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (14 bp):
TTCTTTTTCTTTTA
Found at i:78854779 original size:5 final size:5
Alignment explanation
Indices: 78854769--78854833 Score: 123
Period size: 5 Copynumber: 13.2 Consensus size: 5
78854759 TTATTAAACA
78854769 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
78854819 AATAT AATAT -ATAT A
1 AATAT AATAT AATAT A
78854834 TTTATTCTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.07
5 55 0.93
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:78854966 original size:15 final size:15
Alignment explanation
Indices: 78854947--78854999 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
78854937 TTATATATTT
78854947 TATATTTATAATAATAA
1 TATA-TTATAAT-ATAA
*
78854964 TATAATATAATATAA
1 TATATTATAATATAA
* *
78854979 TATGTAATAATATAA
1 TATATTATAATATAA
78854994 TATATT
1 TATATT
78855000 TACTTATATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 20 0.67
16 6 0.20
17 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
TATATTATAATATAA
Found at i:78854970 original size:5 final size:5
Alignment explanation
Indices: 78854953--78854997 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
78854943 ATTTTATATT
*
78854953 TATAA TAATAA TATAA TATAA TATAA TAT-G TAATAA TATAA TATA
1 TATAA T-ATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATA
78854998 TTTACTTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 1 0.03
5 28 0.80
6 6 0.17
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:78858061 original size:13 final size:13
Alignment explanation
Indices: 78858043--78858067 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78858033 ATTTTCCAAG
78858043 TCATTTTCATTTA
1 TCATTTTCATTTA
78858056 TCATTTTCATTT
1 TCATTTTCATTT
78858068 TGGAGAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATTTTCATTTA
Found at i:78858138 original size:50 final size:52
Alignment explanation
Indices: 78858059--78858159 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 52
78858049 TCATTTATCA
**
78858059 TTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTT-C-ATTTCTCCG
1 TTTTCATTTTGGAGAAAACCACAACCATTTCCAAATG-TTTCCTATTTCTCCG
** *
78858110 TTTTCATTTTGGAG-AAACCTTAACCATTTTCAAATGTTTCCTATTTCTCC
1 TTTTCATTTTGGAGAAAACCACAACCATTTCCAAATGTTTCCTATTTCTCC
78858160 ATTTCACCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
49 3 0.07
50 18 0.42
51 22 0.51
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.44
Consensus pattern (52 bp):
TTTTCATTTTGGAGAAAACCACAACCATTTCCAAATGTTTCCTATTTCTCCG
Found at i:78858165 original size:50 final size:51
Alignment explanation
Indices: 78858060--78858165 Score: 119
Period size: 50 Copynumber: 2.1 Consensus size: 51
78858050 CATTTATCAT
** *
78858060 TTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTTCATTTCTCCGT
1 TTTCATTTTGGAGAAAACCACAACCATTTCCAAATGATTTCATTTCTCCGA
** *
78858111 TTTCATTTTGGAG-AAACCTTAACCATTTTCAAATG-TTTCCTATTTCTCC-A
1 TTTCATTTTGGAGAAAACCACAACCATTTCCAAATGATTT-C-ATTTCTCCGA
78858161 TTTCA
1 TTTCA
78858166 CCATTTCTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
49 3 0.06
50 23 0.49
51 21 0.45
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.43
Consensus pattern (51 bp):
TTTCATTTTGGAGAAAACCACAACCATTTCCAAATGATTTCATTTCTCCGA
Found at i:78862297 original size:44 final size:44
Alignment explanation
Indices: 78862235--78862318 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
78862225 TATGTATGAG
*
78862235 GCATTCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGATACGA
1 GCATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGATACGA
*
78862279 GCATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGAT
1 GCATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGAT
78862319 GCGTTACATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGATACGA
Found at i:78870733 original size:17 final size:18
Alignment explanation
Indices: 78870703--78870737 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
78870693 ATAAGAACTC
*
78870703 AAAAAAGAGAAGAAAAGA
1 AAAAAACAGAAGAAAAGA
78870721 AAAAAACAG-AGAAAAGA
1 AAAAAACAGAAGAAAAGA
78870738 TGGAGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAAACAGAAGAAAAGA
Found at i:78872207 original size:25 final size:26
Alignment explanation
Indices: 78872179--78872234 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
78872169 GAATAAAATT
*
78872179 TTAAAAT-TTTTAATTAA-TATTAGTG
1 TTAAAATATGTTAATTAATTATTA-TG
*
78872204 TT-AAATATGTTAATTAATTATTATT
1 TTAAAATATGTTAATTAATTATTATG
78872229 TTAAAA
1 TTAAAA
78872235 AATATTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 14 0.54
26 8 0.31
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (26 bp):
TTAAAATATGTTAATTAATTATTATG
Found at i:78874574 original size:17 final size:17
Alignment explanation
Indices: 78874535--78874574 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
78874525 ATTTTATAAT
*
78874535 TTTTTAAATATATTTTA
1 TTTTTAAATATATTTAA
78874552 TTTTTAAATAT-TTTAA
1 TTTTTAAATATATTTAA
78874568 TTATTTA
1 TT-TTTA
78874575 TTTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTAAATATATTTAA
Found at i:78877308 original size:19 final size:20
Alignment explanation
Indices: 78877270--78877316 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
78877260 CATAAATTAG
*
78877270 ATCGAGCTGAATTTGAACTC
1 ATCGAGCTGAATTCGAACTC
*
78877290 ATCGAGTTG-ATTCGAACTC
1 ATCGAGCTGAATTCGAACTC
*
78877309 ATAGAGCT
1 ATCGAGCT
78877317 AAGGCTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (20 bp):
ATCGAGCTGAATTCGAACTC
Found at i:78880310 original size:15 final size:16
Alignment explanation
Indices: 78880290--78880328 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
78880280 TTTCTCACAT
*
78880290 TCTTTTTC-TTTTTCA
1 TCTTTTTCGTTTCTCA
78880305 TCTTTTTCGTTTCTCA
1 TCTTTTTCGTTTCTCA
*
78880321 TTTTTTTC
1 TCTTTTTC
78880329 ACTTTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.05, C:0.21, G:0.03, T:0.72
Consensus pattern (16 bp):
TCTTTTTCGTTTCTCA
Found at i:78880328 original size:45 final size:44
Alignment explanation
Indices: 78880279--78880371 Score: 111
Period size: 43 Copynumber: 2.1 Consensus size: 44
78880269 AATACACTCA
*
78880279 TTTTCTCACATTC-TTT-TTCTTTTTCATCTTTTTCGTTTCTC-AT
1 TTTTTTCACATTCTTTTGTTCTTTTTCATCTTTTT--TTTCTCAAT
* * *
78880322 TTTTTTCACTTTCTTTTGTTGTTTTTCCTCTTTTTTTTCTCAAT
1 TTTTTTCACATTCTTTTGTTCTTTTTCATCTTTTTTTTCTCAAT
78880366 TTTTTT
1 TTTTTT
78880372 TCTTTTTCTC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
43 17 0.40
44 11 0.26
45 15 0.35
ACGTcount: A:0.08, C:0.19, G:0.03, T:0.70
Consensus pattern (44 bp):
TTTTTTCACATTCTTTTGTTCTTTTTCATCTTTTTTTTCTCAAT
Found at i:78883702 original size:67 final size:67
Alignment explanation
Indices: 78883615--78883745 Score: 199
Period size: 67 Copynumber: 2.0 Consensus size: 67
78883605 CTTTTCAAAT
*
78883615 AGCACACTCCTACGAACCTCATTTCTTACAGTAGGATTACCAGTCCAAGCTAAATCCCCTGTAAG
1 AGCACACTCCCACGAACCTCATTTCTTACAGTAGGATTACCAGTCCAAGCTAAATCCCCTGTAAG
78883680 AG
66 AG
* * * * * *
78883682 AGCACACTCCCACTAACCTCATTTCTTACAGTGGGATTACTAGTCCAGGCTAAATTCCTTGTAA
1 AGCACACTCCCACGAACCTCATTTCTTACAGTAGGATTACCAGTCCAAGCTAAATCCCCTGTAA
78883746 CATATGCTCA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (67 bp):
AGCACACTCCCACGAACCTCATTTCTTACAGTAGGATTACCAGTCCAAGCTAAATCCCCTGTAAG
AG
Found at i:78885616 original size:13 final size:13
Alignment explanation
Indices: 78885598--78885622 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78885588 CAAAACATTA
78885598 AAATTTTCTGACG
1 AAATTTTCTGACG
78885611 AAATTTTCTGAC
1 AAATTTTCTGAC
78885623 ACTCCGTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
AAATTTTCTGACG
Found at i:78886554 original size:27 final size:27
Alignment explanation
Indices: 78886507--78886585 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
78886497 ATATTAAAAT
*
78886507 TATGTAATACGCTAAGACAAATTAATGA
1 TATGTATTA-GCTAAGACAAATTAATGA
78886535 TATGTATTAGCTAAGACAAATTAATGA
1 TATGTATTAGCTAAGACAAATTAATGA
* *
78886562 TATGTATTAACTAAGACATATTAA
1 TATGTATTAGCTAAGACAAATTAA
78886586 AAGCATGCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
27 40 0.83
28 8 0.17
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.33
Consensus pattern (27 bp):
TATGTATTAGCTAAGACAAATTAATGA
Found at i:78887117 original size:26 final size:26
Alignment explanation
Indices: 78887072--78887143 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
78887062 TATTTTCTGG
** *
78887072 AAATTTTACTAGAGGCAAAATCGCCA
1 AAATTTTACTAGAGATAAAATCACCA
* *
78887098 AAATTTTACTAGAGATAAAAGCATCA
1 AAATTTTACTAGAGATAAAATCACCA
* *
78887124 AAATTTTGCT-GGGATAAAAT
1 AAATTTTACTAGAGATAAAAT
78887144 AGGGATAAGA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 8 0.21
26 30 0.79
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.28
Consensus pattern (26 bp):
AAATTTTACTAGAGATAAAATCACCA
Found at i:78898909 original size:17 final size:17
Alignment explanation
Indices: 78898887--78898920 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
78898877 TGGATTTTTA
78898887 AATTTTGAGATATAAGG
1 AATTTTGAGATATAAGG
*
78898904 AATTTTGTGATATAAGG
1 AATTTTGAGATATAAGG
78898921 TCAGAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (17 bp):
AATTTTGAGATATAAGG
Found at i:78902332 original size:16 final size:16
Alignment explanation
Indices: 78902311--78902349 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
78902301 CTGAATTCAA
*
78902311 CAATCAGGCTATAATT
1 CAATCACGCTATAATT
* *
78902327 CAATCACGTTGTAATT
1 CAATCACGCTATAATT
78902343 CAATCAC
1 CAATCAC
78902350 ACTAAGGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (16 bp):
CAATCACGCTATAATT
Found at i:78913201 original size:5 final size:5
Alignment explanation
Indices: 78913191--78913215 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
78913181 AAATATTTAT
78913191 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
78913216 TATTTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:78913213 original size:32 final size:33
Alignment explanation
Indices: 78913161--78913239 Score: 108
Period size: 32 Copynumber: 2.4 Consensus size: 33
78913151 GTTACCGAAC
78913161 AAATATAAATATAAATAAATAAATATTTATATA
1 AAATATAAATATAAATAAATAAATATTTATATA
78913194 AAATA-AAATA-AAATAAAATAAATATTTATATTTA
1 AAATATAAATATAAAT-AAATAAATATTTATA--TA
*
78913228 AAATATAGATAT
1 AAATATAAATAT
78913240 GAAAAACCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
31 4 0.10
32 20 0.50
33 5 0.12
34 7 0.17
35 4 0.10
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (33 bp):
AAATATAAATATAAATAAATAAATATTTATATA
Found at i:78923044 original size:39 final size:39
Alignment explanation
Indices: 78922990--78923065 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
78922980 CATGATAAAC
* *
78922990 TCTAGTCTTTTTAATAGGCAACAGTTTATTGAAATTAGT
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
78923029 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
78923066 ATCATGCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (39 bp):
TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
Found at i:78925413 original size:3 final size:3
Alignment explanation
Indices: 78925405--78925438 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
78925395 ATTTACTGTT
78925405 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA G
78925439 TCTGTTTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.32, G:0.35, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:78929129 original size:17 final size:18
Alignment explanation
Indices: 78929107--78929140 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
78929097 AATTTAGGCT
78929107 GTGTGGG-CCACACGGGC
1 GTGTGGGCCCACACGGGC
78929124 GTGTGGGCCCACACGGG
1 GTGTGGGCCCACACGGG
78929141 TAAGCCACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.12, C:0.29, G:0.47, T:0.12
Consensus pattern (18 bp):
GTGTGGGCCCACACGGGC
Found at i:78930157 original size:18 final size:18
Alignment explanation
Indices: 78930105--78930157 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
78930095 AAGCTTCCGT
*
78930105 AATGAAAAATGTTTTGGA
1 AATGAATAATGTTTTGGA
* * *
78930123 AACTGAATATTGATTTGTA
1 AA-TGAATAATGTTTTGGA
78930142 AATGAATAATGTTTTG
1 AATGAATAATGTTTTG
78930158 AAAAGGTATG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (18 bp):
AATGAATAATGTTTTGGA
Found at i:78937742 original size:27 final size:27
Alignment explanation
Indices: 78937693--78937771 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
78937683 AAGGGCAAAA
* *
78937693 CAGTCATTTTATC-CTATAGGGGTATAT
1 CAGTCATTTTA-CACTACAAGGGTATAT
* *
78937720 CGGTCATTTTACACTACAAGGGTATTT
1 CAGTCATTTTACACTACAAGGGTATAT
*
78937747 CAGTAATTTTACACTACAAGGGTAT
1 CAGTCATTTTACACTACAAGGGTAT
78937772 TTTGATAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.02
27 44 0.98
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATAT
Found at i:78937950 original size:53 final size:53
Alignment explanation
Indices: 78937712--78938024 Score: 315
Period size: 54 Copynumber: 5.8 Consensus size: 53
78937702 TATCCTATAG
* * * * * * * *
78937712 GGGTATATCGGTCATTTTAC-ACTACAAGGGTATTTCAGTAATTTTACACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CAAGGGTATTTCAATAATTTCAAAAT-CGA
* * * * *** * **
78937766 GGGTATTTTGATAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCA-AAATCGA
* * * * * *
78937820 AGGTATTTCGGTAATTTTACAAATCGAGAGTGTTTCAGTAATTTCAAAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTC-AAAATCGA
* * *
78937874 GGGTATTTTGGCAATTTTTCAAATCGAA-GGTATTTCAATAATTTCAAAATCGA
1 GGGTATTTCGGTAATTTTACAAATC-AAGGGTATTTCAATAATTTCAAAATCGA
*
78937927 GGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAATAATTTCAAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCAAAATCGA
78937980 GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTC
1 GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTC
78938025 TCTTTTTTAT
Statistics
Matches: 216, Mismatches: 38, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
52 2 0.01
53 97 0.45
54 111 0.51
55 6 0.03
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCAAAATCGA
Found at i:78938023 original size:27 final size:27
Alignment explanation
Indices: 78937712--78938015 Score: 258
Period size: 27 Copynumber: 11.3 Consensus size: 27
78937702 TATCCTATAG
* * *
78937712 GGGTATATCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CAA
* *
78937739 GGGTATTTCAGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CAA
* * * *
78937766 GGGTATTTTGATAATTTTATAAATCAG
1 GGGTATTTCGGTAATTTTACAAATCAA
* *
78937793 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTCGGTAATTTTACAAATCAA
* *
78937820 AGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
* * * * * **
78937847 GAGTGTTTCAGTAATTTCAAAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCAA
* * *
78937874 GGGTATTTTGGCAATTTTTCAAATCGAA
1 GGGTATTTCGGTAATTTTACAAATC-AA
** * *
78937902 -GGTATTTCAATAATTTCA-AAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
*
78937927 GGGTATTTCGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCAA
** * *
78937954 GGGTATTTCAATAATTTCA-AAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
78937980 GGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCAA
78938007 GGGTATTTC
1 GGGTATTTC
78938016 AATAATTTCT
Statistics
Matches: 221, Mismatches: 51, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
25 1 0.00
26 43 0.19
27 174 0.79
28 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCAA
Found at i:78938384 original size:28 final size:28
Alignment explanation
Indices: 78938340--78938403 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
78938330 TGGCCCCTTT
* *
78938340 AGGCCCAATCTCGTTCACATGACCCATC
1 AGGCCCAATCACATTCACATGACCCATC
** *
78938368 AGGCCCAATCACATTCATGTGGCCCATC
1 AGGCCCAATCACATTCACATGACCCATC
*
78938396 AAGCCCAA
1 AGGCCCAA
78938404 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.38, G:0.16, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGACCCATC
Found at i:78942805 original size:6 final size:6
Alignment explanation
Indices: 78942796--78942828 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
78942786 TAAGTCTAAG
78942796 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
78942829 CAAATGGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:78946171 original size:46 final size:46
Alignment explanation
Indices: 78946121--78946296 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
78946111 TGGTTGAGCA
*
78946121 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78946167 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
78946212 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78946260 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78946297 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78946277 original size:93 final size:93
Alignment explanation
Indices: 78946118--78946289 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
78946108 GGATGGTTGA
* *
78946118 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78946183 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
78946211 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78946276 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
78946290 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78948254 original size:43 final size:45
Alignment explanation
Indices: 78948207--78948323 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 45
78948197 AATGTCAACG
* * * *
78948207 TCCCAGACGTGGTCTTACATG-TAA-TCACATATCAATGCCACTA
1 TCCCAGACGTGGTCTTACACGAGAACACACATATCAATGCCAATA
* ** *
78948250 TCCCACACAG-GGTCTTACACGAGAACACACATATCGTTGCCAATG
1 TCCCAGAC-GTGGTCTTACACGAGAACACACATATCAATGCCAATA
*
78948295 TCCCAGACGTGGTCTTACACAAGAACACA
1 TCCCAGACGTGGTCTTACACGAGAACACA
78948324 TATCAGAAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
43 17 0.28
44 4 0.07
45 39 0.65
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (45 bp):
TCCCAGACGTGGTCTTACACGAGAACACACATATCAATGCCAATA
Found at i:78948832 original size:3 final size:3
Alignment explanation
Indices: 78948816--78948851 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
78948806 TGAAATTTTC
* *
78948816 ATT ATT ATG GTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
78948852 TTAGTTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:78950687 original size:8 final size:8
Alignment explanation
Indices: 78950674--78950698 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
78950664 CTAGATCGGT
78950674 AAAAGCCG
1 AAAAGCCG
78950682 AAAAGCCG
1 AAAAGCCG
78950690 AAAAGCCG
1 AAAAGCCG
78950698 A
1 A
78950699 CATTTATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:78950975 original size:27 final size:26
Alignment explanation
Indices: 78950944--78951004 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
78950934 TTTATTAAAC
* *
78950944 TACCCCTAAGTATGAAAATTACCGTTT
1 TACCCCTAAGTAT-AAAATGACCGTTA
* * *
78950971 TACCCCTAGGTGTTAAATGACCGTTA
1 TACCCCTAAGTATAAAATGACCGTTA
78950997 TACCCCTA
1 TACCCCTA
78951005 GGGTTAATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 18 0.62
27 11 0.38
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (26 bp):
TACCCCTAAGTATAAAATGACCGTTA
Found at i:78950993 original size:26 final size:25
Alignment explanation
Indices: 78950959--78951011 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
78950949 CTAAGTATGA
* *
78950959 AAATTACCGTTTTACCCCTAGGTGTT
1 AAATGACCGTTATACCCCTAGG-GTT
78950985 AAATGACCGTTATACCCCTAGGGTT
1 AAATGACCGTTATACCCCTAGGGTT
78951010 AA
1 AA
78951012 TCTTGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (25 bp):
AAATGACCGTTATACCCCTAGGGTT
Found at i:78951336 original size:20 final size:20
Alignment explanation
Indices: 78951306--78951350 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
78951296 CTGTTTTATT
*
78951306 ATGGG-CCAACTTTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
78951325 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
78951345 ATGGGC
1 ATGGGC
78951351 AAGACCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:78951515 original size:62 final size:61
Alignment explanation
Indices: 78951371--78951515 Score: 161
Period size: 61 Copynumber: 2.4 Consensus size: 61
78951361 ATATCTCGAC
* * * *
78951371 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCAAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTACGCCAAGTATACACTGATA
* * *
78951432 TTGTAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAACGCCCAGT-TAACACTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-ACGCCAAGTAT-ACACTGATA
*
78951493 TTCTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
78951516 TAAAGCTTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 42 0.58
62 28 0.39
63 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTACGCCAAGTATACACTGATA
Found at i:78960443 original size:29 final size:29
Alignment explanation
Indices: 78960401--78960457 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
78960391 ATTGAAGGTG
78960401 ATTGTCTAAACCATTCTACTAAAACTAAT
1 ATTGTCTAAACCATTCTACTAAAACTAAT
78960430 ATTGTCTAAACCATTCTACTAAAACTAA
1 ATTGTCTAAACCATTCTACTAAAACTAA
78960458 CAATATGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.33
Consensus pattern (29 bp):
ATTGTCTAAACCATTCTACTAAAACTAAT
Found at i:78965482 original size:24 final size:22
Alignment explanation
Indices: 78965439--78965483 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
78965429 GTTAAAGTGT
78965439 AAATATGAAAAATTTGAAGGAA
1 AAATATGAAAAATTTGAAGGAA
*
78965461 AAATAGTGAAAATATTTTAAGGA
1 AAATA-TGAAAA-ATTTGAAGGA
78965484 TGGAATGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 6 0.30
24 9 0.45
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.27
Consensus pattern (22 bp):
AAATATGAAAAATTTGAAGGAA
Found at i:78967935 original size:46 final size:45
Alignment explanation
Indices: 78967882--78968154 Score: 294
Period size: 46 Copynumber: 5.9 Consensus size: 45
78967872 TTTCTGAAAT
* * * *
78967882 GAAATGTGTAAGGCCATAGTTGAAAGATACCATAGCAACATGATA
1 GAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACA
* * *
78967927 GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA
1 G-AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACA
* * * * *
78967973 TGAAATGTGTAAGACCATAGTTGAAAAATACCTTTGCAACGTGACA
1 -GAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACA
* * * *
78968019 TGAAATGAATAAGACCATGGTTGAAAGATCCCATGGCAACATGACGGG
1 -GAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGAC--A
* * *
78968067 GAAATGAATAAGACCTTGGTTGAAAGATACCATGGCAACATGACA
1 GAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACA
* * *
78968112 GAAAACGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 G-AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATG
78968155 TCGAAGATAA
Statistics
Matches: 196, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
45 2 0.01
46 151 0.77
47 43 0.22
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (45 bp):
GAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACA
Found at i:78968037 original size:92 final size:93
Alignment explanation
Indices: 78967880--78968154 Score: 338
Period size: 92 Copynumber: 3.0 Consensus size: 93
78967870 GCTTTCTGAA
* * *
78967880 ATGAAATGTGTAAGGCCATAGTTGAAAGATACCATAGCAACATGATAGAAAATGTGTAAGACCAT
1 ATGAAATGTGTAAGACCATAGTTGAAAGATACCATAGCAACATGACAGAAAATGAGTAAGACCAT
*
78967945 GGTTGAAAGATACCATGGCAACATGA-T
66 GGTTGAAAGATACCATGGCAACATGACG
* * * * *
78967972 ATGAAATGTGTAAGACCATAGTTGAAAAATACCTTTGCAACGTGACATG-AAATGAATAAGACCA
1 ATGAAATGTGTAAGACCATAGTTGAAAGATACCATAGCAACATGACA-GAAAATGAGTAAGACCA
*
78968036 TGGTTGAAAGATCCCATGGCAACATGACG
65 TGGTTGAAAGATACCATGGCAACATGACG
** ** * * * *
78968065 GGGAAATGAATAAGACCTTGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAGACCAT
1 ATGAAATGTGTAAGACCATAGTTGAAAGATACCATAGCAACATGACAGAAAATGAGTAAGACCAT
* * *
78968130 AGTTGAAAGATACTATGGCATCATG
66 GGTTGAAAGATACCATGGCAACATG
78968155 TCGAAGATAA
Statistics
Matches: 154, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
92 81 0.53
93 73 0.47
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (93 bp):
ATGAAATGTGTAAGACCATAGTTGAAAGATACCATAGCAACATGACAGAAAATGAGTAAGACCAT
GGTTGAAAGATACCATGGCAACATGACG
Found at i:78968125 original size:93 final size:92
Alignment explanation
Indices: 78967890--78968154 Score: 316
Period size: 93 Copynumber: 2.9 Consensus size: 92
78967880 ATGAAATGTG
* * *
78967890 TAAGGCCATAGTTGAAAGATACCATAGCAACATGATAGAAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATAGTTGAAAGATACCATAGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGA
* * **
78967955 TACCATGGCAACATGATATGAAATGTG
66 TACCATGGCAACATGAGAGGAAATGAA
* * * * *
78967982 TAAGACCATAGTTGAAAAATACCTTTGCAACGTGACATG-AAATGAATAAGACCATGGTTGAAAG
1 TAAGACCATAGTTGAAAGATACCATAGCAACATGACA-GAAAATGAGTAAGACCATGGTTGAAAG
* *
78968046 ATCCCATGGCAACATGACGGGGAAATGAA
65 ATACCATGGCAACATGA-GAGGAAATGAA
* * * * *
78968075 TAAGACCTTGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGA
1 TAAGACCATAGTTGAAAGATACCATAGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGA
* *
78968140 TACTATGGCATCATG
66 TACCATGGCAACATG
78968155 TCGAAGATAA
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
92 71 0.49
93 73 0.51
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (92 bp):
TAAGACCATAGTTGAAAGATACCATAGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGA
TACCATGGCAACATGAGAGGAAATGAA
Found at i:78968129 original size:139 final size:138
Alignment explanation
Indices: 78967880--78968142 Score: 357
Period size: 139 Copynumber: 1.9 Consensus size: 138
78967870 GCTTTCTGAA
** * * **
78967880 ATGAAATGTGTAAGGCCATAGTTGAAAGATACCATAGCAACATGATAGAAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATAGTTGAAAGATACCATAGCAACATGAGAGAAAATGAATAAGACCAT
* * *
78967945 GGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATAGTTGAAAAATACCTTTGC
66 GGTTGAAAGATACCATGGCAACATGACATGAAACGAGTAAGACCATAGTTGAAAAATACCTTTGC
78968010 AACGTGAC
131 AACGTGAC
* * * * * *
78968018 ATGAAATGAATAAGACCATGGTTGAAAGATCCCATGGCAACATGACGGGGAAATGAATAAGACCT
1 ATGAAATGAATAAGACCATAGTTGAAAGATACCATAGCAACATGA-GAGAAAATGAATAAGACCA
*
78968083 TGGTTGAAAGATACCATGGCAACATGACA-GAAAACGAGTAAGACCATAGTTGAAAGATAC
65 TGGTTGAAAGATACCATGGCAACATGACATG-AAACGAGTAAGACCATAGTTGAAAAATAC
78968143 TATGGCATCA
Statistics
Matches: 107, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
138 40 0.37
139 67 0.63
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
ATGAAATGAATAAGACCATAGTTGAAAGATACCATAGCAACATGAGAGAAAATGAATAAGACCAT
GGTTGAAAGATACCATGGCAACATGACATGAAACGAGTAAGACCATAGTTGAAAAATACCTTTGC
AACGTGAC
Found at i:78970043 original size:40 final size:40
Alignment explanation
Indices: 78969988--78970209 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
78969978 TACTCGAATG
78969988 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
78970028 ATATCCGAGTTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
78970068 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* **
78970108 ATATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
78970148 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
78970188 CTATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78970210 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 150 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:78977372 original size:35 final size:35
Alignment explanation
Indices: 78977262--78977427 Score: 208
Period size: 35 Copynumber: 4.6 Consensus size: 35
78977252 TCCTCATTGA
** *
78977262 AATACCATACCTACATTTTTCAACTCGGTATGGA-
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
* **
78977296 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
78977336 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
78977371 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
78977406 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
78977428 CTTTGCCATG
Statistics
Matches: 116, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
34 27 0.23
35 59 0.51
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:78977401 original size:75 final size:72
Alignment explanation
Indices: 78977257--78977427 Score: 231
Period size: 75 Copynumber: 2.4 Consensus size: 72
78977247 GGTTTTCCTC
** * * **
78977257 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGAAATGCCATACCTACATTTCTTAACTC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTATGGAAATACCATACCTACATTTCACAACTC
78977322 AGTATGG
66 AGTATGG
*
78977329 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGA-AATACCATACCTACATTTCACAA
78977394 CTCAGTATGG
63 CTCAGTATGG
78977404 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
78977428 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
70 21 0.24
72 1 0.01
73 6 0.07
74 30 0.34
75 31 0.35
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (72 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGAAATACCATACCTACATTTCACAACTC
AGTATGG
Found at i:78984782 original size:35 final size:35
Alignment explanation
Indices: 78984738--78984904 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
78984728 TCCTCATTGA
** *
78984738 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
78984773 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
78984813 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
78984848 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
78984883 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
78984905 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:78984821 original size:75 final size:73
Alignment explanation
Indices: 78984733--78984904 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
78984723 GGTTTTCCTC
** * * **
78984733 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
78984797 TCAGTATGG
65 TCAGTATGG
*
78984806 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
78984871 CTCAGTATGG
64 CTCAGTATGG
78984881 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
78984905 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:78987595 original size:40 final size:40
Alignment explanation
Indices: 78987550--78987716 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
78987540 CGGAATATAA
78987550 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
78987590 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
78987630 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
78987670 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
78987709 CCGGATAT
1 CCGGATAT
78987717 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78995557 original size:40 final size:40
Alignment explanation
Indices: 78995512--78995678 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
78995502 CGGAATATAA
*
78995512 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
78995552 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
78995592 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
78995632 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
78995671 CCGGATAT
1 CCGGATAT
78995679 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:78997170 original size:39 final size:39
Alignment explanation
Indices: 78997126--78997287 Score: 152
Period size: 39 Copynumber: 4.2 Consensus size: 39
78997116 CGGAATATAA
78997126 CCGGATAAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *
78997165 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGG-CTTAGC
1 CCGGATA-AATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
78997203 CCGGATTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
78997242 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATA-AATCACTAGCACAAATGCCTTCGGGTCTTAGC
78997281 CCGGATA
1 CCGGATA
78997288 TCATTCAATT
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
37 1 0.01
38 31 0.31
39 48 0.48
40 21 0.21
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATAAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79000399 original size:40 final size:40
Alignment explanation
Indices: 79000333--79000499 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
79000323 AAATTGAATG
* * *
79000333 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79000372 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79000412 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79000452 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79000492 ATATCCGG
1 ATATCCGG
79000500 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79007495 original size:17 final size:18
Alignment explanation
Indices: 79007453--79007501 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
79007443 AGTTGAAAAG
79007453 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
79007472 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
79007489 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
79007502 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:79008389 original size:40 final size:40
Alignment explanation
Indices: 79008323--79008489 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
79008313 AAATTGAATG
* * *
79008323 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
79008362 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79008402 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
79008442 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
79008482 ATATCCGG
1 ATATCCGG
79008490 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79014796 original size:40 final size:40
Alignment explanation
Indices: 79014745--79014847 Score: 179
Period size: 40 Copynumber: 2.6 Consensus size: 40
79014735 TTCGTATATA
* *
79014745 TATATATGGCACTTAGTGCGTGATTTGAGATAGCTTTGGC
1 TATATATGGCACTTAGTGTGTGATTTGAAATAGCTTTGGC
79014785 TATATATGGCACTTAGTGTGTGATTTGAAATAGCTTTGGC
1 TATATATGGCACTTAGTGTGTGATTTGAAATAGCTTTGGC
*
79014825 TATATATGGAACTTAGTGTGTGA
1 TATATATGGCACTTAGTGTGTGA
79014848 GACCGAGATA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.25, C:0.10, G:0.26, T:0.39
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGTGATTTGAAATAGCTTTGGC
Found at i:79014910 original size:41 final size:41
Alignment explanation
Indices: 79014745--79014927 Score: 165
Period size: 40 Copynumber: 4.5 Consensus size: 41
79014735 TTCGTATATA
* * *
79014745 TATATATGGCACTTAGTGCGTGA-TTTGAGATAGCTTTGGC
1 TATATATGGCACTTAGTGTGTGAGATTGAAATAGCTTTGGC
*
79014785 TATATATGGCACTTAGTGTGTGA-TTTGAAATAGCTTTGGC
1 TATATATGGCACTTAGTGTGTGAGATTGAAATAGCTTTGGC
* ** * * ***
79014825 TATATATGGAACTTAGTGTGTGAGACCGAGATAACTTCAAC
1 TATATATGGCACTTAGTGTGTGAGATTGAAATAGCTTTGGC
* * *
79014866 TATGA-AAGGCACTCAGTGTGTGAGATTAAAATAGCTTTGGC
1 TAT-ATATGGCACTTAGTGTGTGAGATTGAAATAGCTTTGGC
* * *
79014907 TATGTTTTGGCACCTAGTGTG
1 TAT-ATATGGCACTTAGTGTG
79014928 CCAGAATTTG
Statistics
Matches: 113, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
40 60 0.53
41 41 0.36
42 12 0.11
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.35
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGTGAGATTGAAATAGCTTTGGC
Found at i:79017308 original size:40 final size:40
Alignment explanation
Indices: 79017253--79017476 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
79017243 TATTCGGATG
79017253 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
79017293 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
79017336 ACACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
79017376 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
79017416 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
79017456 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79017477 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 14 0.09
40 112 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:79017396 original size:83 final size:80
Alignment explanation
Indices: 79017257--79017476 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
79017247 CGGATGATAT
* **
79017257 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
79017322 TGCGAGTAGTTG-CTACAC
66 TGC---TAG-TGACTACAC
*
79017340 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
79017405 TGCTAGTGACTATAT
66 TGCTAGTGACTACAC
** * *
79017420 CCGGGCTAAAACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
79017477 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.13
80 43 0.34
81 2 0.02
83 64 0.51
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTACAC
Found at i:79017496 original size:123 final size:122
Alignment explanation
Indices: 79017253--79017477 Score: 312
Period size: 123 Copynumber: 1.9 Consensus size: 122
79017243 TATTCGGATG
** * **
79017253 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAAACCCGAAGGCA
* * **
79017318 TTTGTGCGAGTAGTTGCTACACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66 TTTGTGC-AGTAGTTGCTACACCCGGGCTAAATCCCGAAGACATTTGTGAAAGTGACT
*
79017376 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAAACCCGAAGGCA
* *
79017441 TTTGTGC-G-AGTTGCTATATCC-GGCTAAATCCCGAAGA
66 TTTGTGCAGTAGTTGCTACACCCGGGCTAAATCCCGAAGA
79017478 TACTTGGGTT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
119 14 0.15
120 11 0.12
121 1 0.01
123 66 0.72
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (122 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAAACCCGAAGGCA
TTTGTGCAGTAGTTGCTACACCCGGGCTAAATCCCGAAGACATTTGTGAAAGTGACT
Found at i:79020393 original size:40 final size:40
Alignment explanation
Indices: 79020316--79020570 Score: 399
Period size: 40 Copynumber: 6.4 Consensus size: 40
79020306 AAACCAAGTA
* *
79020316 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
79020355 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79020395 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79020435 CCTTCGGGACTTGGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79020475 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
79020515 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
79020555 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
79020571 GGTTATCATC
Statistics
Matches: 201, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.07
40 186 0.93
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79026232 original size:29 final size:29
Alignment explanation
Indices: 79026193--79026271 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
79026183 CTTAATAATC
*
79026193 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
79026223 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
79026252 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
79026272 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:79034312 original size:29 final size:29
Alignment explanation
Indices: 79034273--79034351 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
79034263 CTTAATAATC
*
79034273 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
79034303 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
79034332 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
79034352 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:79037678 original size:40 final size:40
Alignment explanation
Indices: 79037620--79037807 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
79037610 ATAACCACAA
* * *
79037620 GCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
79037660 GCACAAATGCCTTCGGGTCTTAGCCCGAATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
79037700 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
79037740 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
79037780 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
79037808 GTATCATTCA
Statistics
Matches: 133, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
40 131 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:79037723 original size:80 final size:80
Alignment explanation
Indices: 79037608--79037811 Score: 293
Period size: 80 Copynumber: 2.5 Consensus size: 80
79037598 ATTTAGCCGG
* * * *
79037608 ATATAACCACAAGCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTT
1 ATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTT
*
79037673 CGGGTCTTAGCCCGA
66 CGGGTCTTAACCCGA
* *
79037688 ATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCT
1 ATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
*
79037752 TCGGGTCTTAACCCGG
65 TCGGGTCTTAACCCGA
* * *
79037768 ATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 ATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
79037812 CATTCAATTG
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 108 0.98
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
ATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTT
CGGGTCTTAACCCGA
Found at i:79045817 original size:79 final size:80
Alignment explanation
Indices: 79045724--79045928 Score: 310
Period size: 79 Copynumber: 2.6 Consensus size: 80
79045714 TCTTCGGAAT
* *
79045724 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGG-TATAGCAACTCGCAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
79045787 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
79045802 TTAGCCCGGATATAACAACTCGCACAAATGCCTTC-GGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
79045866 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * *
79045881 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGG-CTTAGCCCGG
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGG
79045929 GTATCATTCA
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
78 17 0.15
79 95 0.83
80 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (80 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:79045832 original size:40 final size:40
Alignment explanation
Indices: 79045728--79045928 Score: 275
Period size: 39 Copynumber: 5.1 Consensus size: 40
79045718 CGGAATTTAG
* ** *
79045728 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* *
79045768 CCGG-TATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
79045807 CCGGATATAACAACTCGCACAAATGCCTTC-GGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
*
79045846 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
79045886 CCGGATATAATC-ACTAGCATAAATGCCTTCGGG-CTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
79045925 CCGG
1 CCGG
79045929 GTATCATTCA
Statistics
Matches: 145, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 79 0.54
40 65 0.45
41 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:79051235 original size:40 final size:40
Alignment explanation
Indices: 79051158--79051414 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
79051148 AAACCAAGTA
* *
79051158 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
79051197 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79051237 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79051277 CCTTCGGGACATAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79051317 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79051357 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
79051396 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
79051415 TTATCATCCG
Statistics
Matches: 200, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
38 1 0.00
39 48 0.24
40 151 0.75
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79059522 original size:40 final size:40
Alignment explanation
Indices: 79059467--79059690 Score: 261
Period size: 40 Copynumber: 5.5 Consensus size: 40
79059457 TATTCGGATG
79059467 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
79059507 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * * *
79059550 ACACCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * ** * *
79059590 ATATCCGGGCTAAGTCCCAAAGACATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
79059630 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
79059670 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79059691 ATACTTGGGT
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 13 0.08
40 107 0.68
41 1 0.01
43 36 0.23
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:79063962 original size:40 final size:40
Alignment explanation
Indices: 79063918--79064017 Score: 148
Period size: 40 Copynumber: 2.5 Consensus size: 40
79063908 GATTTGGATA
* *
79063918 TATATATGGCACTTAGTGTGCGATTTC-AGATAGCTCTGGC
1 TATATATGGCACTTAGTGTGC-AATTCAAAATAGCTCTGGC
*
79063958 TATATATGGCACTTAGTGTGCAATTCAAAATAGCTTTGGC
1 TATATATGGCACTTAGTGTGCAATTCAAAATAGCTCTGGC
*
79063998 TATATGTGGCACTTAGTGTG
1 TATATATGGCACTTAGTGTG
79064018 TGAGACCGAG
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 4 0.07
40 51 0.93
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCAATTCAAAATAGCTCTGGC
Found at i:79064041 original size:81 final size:81
Alignment explanation
Indices: 79063918--79064105 Score: 195
Period size: 81 Copynumber: 2.3 Consensus size: 81
79063908 GATTTGGATA
*** *
79063918 TATATATGGCACTTAGTGTGCGATTTCAGATAGCTCTGGCTAT-ATATGGCACTTAGTGTG-CA-
1 TATATATGGCACTTAGTGTGCGAGACCAGATAGCTCTGGCTATGA-AAGGCACTTAGTGTGTCAC
79063980 ATTCAAAATAGCTTTGGC
65 ATT-AAAATAGCTTTGGC
* * *
79063998 TATATGTGGCACTTAGTGTGTGAGACCGAGATAGCT-TCGGCTATGAAAGGCACTTAGTGTGTGA
1 TATATATGGCACTTAGTGTGCGAGACC-AGATAGCTCT-GGCTATGAAAGGCACTTAGTGTGTCA
**
79064062 CATTAAAATAGCTTCAGC
64 CATTAAAATAGCTTTGGC
* * *
79064080 TATGTTTTAGCACTTAGTGTGCGAGA
1 TAT-ATATGGCACTTAGTGTGCGAGA
79064106 ATTCGAGTAT
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
80 23 0.26
81 28 0.31
82 17 0.19
83 21 0.24
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (81 bp):
TATATATGGCACTTAGTGTGCGAGACCAGATAGCTCTGGCTATGAAAGGCACTTAGTGTGTCACA
TTAAAATAGCTTTGGC
Found at i:79064073 original size:41 final size:41
Alignment explanation
Indices: 79063925--79064100 Score: 121
Period size: 41 Copynumber: 4.3 Consensus size: 41
79063915 ATATATATAT
* * * * *
79063925 GGCACTTAGTGTGCGATTTCAGATAGC-TCTGGCTAT-ATAT
1 GGCACTTAGTGTGTGAATTAAAATAGCTTC-GGCTATGATAA
* * **
79063965 GGCACTTAGTGTG-CAATTCAAAATAGCTTTGGCTAT-ATGT
1 GGCACTTAGTGTGTGAATT-AAAATAGCTTCGGCTATGATAA
*** *
79064005 GGCACTTAGTGTGTGAGACCGAGATAGCTTCGGCTATGA-AA
1 GGCACTTAGTGTGTGA-ATTAAAATAGCTTCGGCTATGATAA
* * *
79064046 GGCACTTAGTGTGTGACATTAAAATAGCTTCAGCTATGTTTTA
1 GGCACTTAGTGTGTGA-ATTAAAATAGCTTCGGCTATG-ATAA
79064089 -GCACTTAGTGTG
1 GGCACTTAGTGTG
79064101 CGAGAATTCG
Statistics
Matches: 107, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
39 3 0.03
40 41 0.38
41 48 0.45
42 14 0.13
43 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
GGCACTTAGTGTGTGAATTAAAATAGCTTCGGCTATGATAA
Found at i:79065727 original size:100 final size:100
Alignment explanation
Indices: 79065554--79065746 Score: 386
Period size: 100 Copynumber: 1.9 Consensus size: 100
79065544 AGATATATAG
79065554 TGTAACACCCCAAAACCCGAGACCATCGCCGGTGTCGGACCCGAGGGTTAACAAACCAAGTTCAC
1 TGTAACACCCCAAAACCCGAGACCATCGCCGGTGTCGGACCCGAGGGTTAACAAACCAAGTTCAC
79065619 ATGTTTTTGCCCACCAATTTGACATTTCATAAAAT
66 ATGTTTTTGCCCACCAATTTGACATTTCATAAAAT
79065654 TGTAACACCCCAAAACCCGAGACCATCGCCGGTGTCGGACCCGAGGGTTAACAAACCAAGTTCAC
1 TGTAACACCCCAAAACCCGAGACCATCGCCGGTGTCGGACCCGAGGGTTAACAAACCAAGTTCAC
79065719 ATGTTTTTGCCCACCAATTTGACATTTC
66 ATGTTTTTGCCCACCAATTTGACATTTC
79065747 CAGTCAGGCT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 93 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (100 bp):
TGTAACACCCCAAAACCCGAGACCATCGCCGGTGTCGGACCCGAGGGTTAACAAACCAAGTTCAC
ATGTTTTTGCCCACCAATTTGACATTTCATAAAAT
Found at i:79067052 original size:40 final size:41
Alignment explanation
Indices: 79067007--79067173 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
79066997 CGGAATATAA
*
79067007 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
79067047 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
79067087 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
79067127 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
79067166 CCGGATAT
1 CCGGATAT
79067174 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:79068017 original size:17 final size:19
Alignment explanation
Indices: 79067994--79068039 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
79067984 AAGAAGCATG
79067994 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
79068012 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
79068030 AATCATGCTC
1 AATCATGCTC
79068040 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:79075064 original size:40 final size:39
Alignment explanation
Indices: 79075019--79075184 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
79075009 CGGAATATAA
79075019 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
79075059 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
79075098 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
79075138 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
79075177 CCGGATAT
1 CCGGATAT
79075185 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:79075141 original size:79 final size:79
Alignment explanation
Indices: 79075035--79075184 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
79075025 ATAATCACGT
*
79075035 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
79075098 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
79075114 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
79075179 GGATAT
66 GGATAT
79075185 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:79076029 original size:17 final size:19
Alignment explanation
Indices: 79076006--79076051 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
79075996 AAGAAGCATG
79076006 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
79076024 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
79076042 AATCATGCTC
1 AATCATGCTC
79076052 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:79081022 original size:36 final size:36
Alignment explanation
Indices: 79080961--79081112 Score: 177
Period size: 36 Copynumber: 4.2 Consensus size: 36
79080951 GGATTGAATG
* **
79080961 ATATCCGGGCTAAGTCCCGAA-GCATTTGTGCTGGAA
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTT
*
79080997 ATATCCGGG-TAATTCCCGAAGGCATTTGTGCTAGTT
1 ATATCCGGGCTAA-GCCCGAAGGCATTTGTGCTAGTT
*
79081033 ACATCCGGGCTAAGCCCGAAGGCA-TTGTGC-AGTT
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTT
* *
79081067 CTATCCGGGCTAAGCCCGAAGGCATTTGTGCAGTGGTT
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGC--TAGTT
79081105 ATATCCGG
1 ATATCCGG
79081113 TATGAACTAT
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
34 26 0.26
35 21 0.21
36 39 0.39
37 3 0.03
38 10 0.10
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (36 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTT
Found at i:79081089 original size:70 final size:72
Alignment explanation
Indices: 79080963--79081097 Score: 179
Period size: 70 Copynumber: 1.9 Consensus size: 72
79080953 ATTGAATGAT
* *
79080963 ATCCGGGCTAAGTCCCGAAGCATTTGTGCTGGAAATATCCGGGTAATTCCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGTCCCGAAGCATTTGTGCTAGAAATATCCGGGTAATGCCCGAAGGCATTTGTGC
79081028 TAGTTAC
66 TAGTTAC
***
79081035 ATCCGGGCTAAG-CCCGAAGGCA-TTGTGC-AGTTCTATCCGGGCTAA-GCCCGAAGGCATTTGT
1 ATCCGGGCTAAGTCCCGAA-GCATTTGTGCTAGAAATATCCGGG-TAATGCCCGAAGGCATTTGT
79081096 GC
64 GC
79081098 AGTGGTTATA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
70 26 0.46
71 15 0.27
72 15 0.27
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (72 bp):
ATCCGGGCTAAGTCCCGAAGCATTTGTGCTAGAAATATCCGGGTAATGCCCGAAGGCATTTGTGC
TAGTTAC
Found at i:79086580 original size:40 final size:40
Alignment explanation
Indices: 79086514--79086657 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
79086504 AAATTGAATG
* * *
79086514 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
79086553 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
79086593 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
79086633 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
79086658 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:79086678 original size:40 final size:40
Alignment explanation
Indices: 79086551--79086680 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
79086541 ATGCTGGAAA
* *
79086551 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
79086591 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
79086631 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
79086671 TTATATCCGG
1 TTATATCCGG
79086681 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:79094721 original size:40 final size:40
Alignment explanation
Indices: 79094594--79094723 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
79094584 ATGCTGGAAA
* *
79094594 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
79094634 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
79094674 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
79094714 TTATATCCGG
1 TTATATCCGG
79094724 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:79099128 original size:23 final size:23
Alignment explanation
Indices: 79099077--79099133 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
79099067 ATTTATGTTT
79099077 TTATTTTTATTCTATTTTAAGAC
1 TTATTTTTATTCTATTTTAAGAC
* * *
79099100 TAATTTTTATTTTTTCTTTAAG-C
1 TTATTTTTATTCTAT-TTTAAGAC
*
79099123 TTATTTCTATT
1 TTATTTTTATT
79099134 AGATTTTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 22 0.79
24 6 0.21
ACGTcount: A:0.23, C:0.09, G:0.04, T:0.65
Consensus pattern (23 bp):
TTATTTTTATTCTATTTTAAGAC
Found at i:79108601 original size:15 final size:15
Alignment explanation
Indices: 79108546--79108601 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
79108536 TAAAATATAA
79108546 AATT-AAATTATTATT
1 AATTAAAATTATT-TT
**
79108561 AATTATTATTATTTT
1 AATTAAAATTATTTT
* *
79108576 ATTTAATATTATTTT
1 AATTAAAATTATTTT
79108591 AATTAAAATTA
1 AATTAAAATTA
79108602 GTTATGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 28 0.82
16 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
AATTAAAATTATTTT
Found at i:79108860 original size:18 final size:17
Alignment explanation
Indices: 79108837--79108872 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
79108827 ATTAAATATC
79108837 ATAAAAATTAATTTTATT
1 ATAAAAA-TAATTTTATT
79108855 ATAAAAATAATTTTATT
1 ATAAAAATAATTTTATT
79108872 A
1 A
79108873 AATATAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAAAAATAATTTTATT
Found at i:79109443 original size:32 final size:33
Alignment explanation
Indices: 79109407--79109470 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 33
79109397 AAATTTTTTT
79109407 ATTTTATCTTTTTGAAAAAA-T-TATTGA-GATAA
1 ATTTTAT-TTTTT-AAAAAAGTATATTGATGATAA
*
79109439 ATTTTGTTTTTTAAAAAAGTATATTGATGATA
1 ATTTTATTTTTTAAAAAAGTATATTGATGATA
79109471 TTTTTCTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 6 0.21
31 6 0.21
32 12 0.43
33 4 0.14
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (33 bp):
ATTTTATTTTTTAAAAAAGTATATTGATGATAA
Found at i:79110210 original size:2 final size:2
Alignment explanation
Indices: 79110152--79110192 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
79110142 ATTCTAGTTT
79110152 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
79110193 TCAGACCTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:79112576 original size:37 final size:37
Alignment explanation
Indices: 79112526--79112616 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
79112516 TTATTACGAA
79112526 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
79112563 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
79112600 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
79112617 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:79112714 original size:48 final size:48
Alignment explanation
Indices: 79112656--79112855 Score: 328
Period size: 48 Copynumber: 4.2 Consensus size: 48
79112646 TGTTACAACA
79112656 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
79112704 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACTCATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** * *
79112752 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* **
79112800 TTCACATTAGCCCTTCGGCTTTACCACATATACGCATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
79112848 TTCACATT
1 TTCACATT
79112856 CATCACATCG
Statistics
Matches: 139, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 139 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:79112904 original size:47 final size:48
Alignment explanation
Indices: 79112847--79112951 Score: 185
Period size: 47 Copynumber: 2.2 Consensus size: 48
79112837 CACACATATA
79112847 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACAC
*
79112894 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACAC
79112943 TTTCACATT
1 TTTCACATT
79112952 TATATATACA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
47 36 0.65
49 19 0.35
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.35
Consensus pattern (48 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACAC
Found at i:79112950 original size:18 final size:18
Alignment explanation
Indices: 79112927--79112970 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 18
79112917 TTAGGCCTTA
79112927 TCACATATATATACACTT
1 TCACATATATATACACTT
79112945 TCACATTTATATATACACTT
1 TCACA--TATATATACACTT
79112965 TCACAT
1 TCACAT
79112971 TCATCACATC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.25
20 18 0.75
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACATATATATACACTT
Found at i:79112959 original size:22 final size:20
Alignment explanation
Indices: 79112932--79112971 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
79112922 CCTTATCACA
79112932 TATATATACACTTTCACATT
1 TATATATACACTTTCACATT
79112952 TATATATACACTTTCACATT
1 TATATATACACTTTCACATT
79112972 CATCACATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45
Consensus pattern (20 bp):
TATATATACACTTTCACATT
Found at i:79113018 original size:49 final size:49
Alignment explanation
Indices: 79112952--79113057 Score: 194
Period size: 49 Copynumber: 2.2 Consensus size: 49
79112942 CTTTCACATT
* *
79112952 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATACACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACA
79113001 TATATACACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACA
1 TATATACACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACA
79113050 TATATACA
1 TATATACA
79113058 TCTCATACAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 55 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (49 bp):
TATATACACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACA
Found at i:79113018 original size:69 final size:69
Alignment explanation
Indices: 79112884--79113019 Score: 254
Period size: 69 Copynumber: 2.0 Consensus size: 69
79112874 GCCTTATCAC
* *
79112884 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCAC
79112949 ATTT
66 ATTT
79112953 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCAC
79113018 AT
66 AT
79113020 CCATCACATC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (69 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCAC
ATTT
Found at i:79116263 original size:16 final size:16
Alignment explanation
Indices: 79116244--79116283 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
79116234 AATATTGTGT
79116244 AAAGAAAAAG-GAAAGA
1 AAAGAAAAAGAG-AAGA
79116260 AAAGAAAAAGAGAAGA
1 AAAGAAAAAGAGAAGA
79116276 AATAGAAA
1 AA-AGAAA
79116284 GATGGACGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.03
Consensus pattern (16 bp):
AAAGAAAAAGAGAAGA
Found at i:79124810 original size:43 final size:43
Alignment explanation
Indices: 79124719--79124812 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
79124709 TTTATCTGTT
* **
79124719 TTGTTGTATACCCACAGCCAAAGGCAGATTCCATTTGCGGGTA
1 TTGTTGTATACCCACAGCCAAAGGCAAATTCCAACTGCGGGTA
* *
79124762 TTGTTGTATATCCACAGCCAAAGGCAAATTCCAACTGTGGGT-
1 TTGTTGTATACCCACAGCCAAAGGCAAATTCCAACTGCGGGTA
79124804 TATGTTGTA
1 T-TGTTGTA
79124813 AAATCTATAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
42 1 0.02
43 44 0.98
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (43 bp):
TTGTTGTATACCCACAGCCAAAGGCAAATTCCAACTGCGGGTA
Found at i:79126361 original size:247 final size:247
Alignment explanation
Indices: 79125845--79126481 Score: 967
Period size: 247 Copynumber: 2.6 Consensus size: 247
79125835 TAAAGCTAGG
* *
79125845 ATTAAGGGCTTGTTGAAAAATTAGAAATAATGAAAGGGAAGGGATTCAAACCTTAGACCTCTAGG
1 ATTAAGGGCTTGTTAAAAAATTAGAAATAATGAAAGGGGAGGGATTCAAACCTTAGACCTCTAGG
*
79125910 AAAAGGCACTAACATTTAACCATTGAGCATATAGCTTATTTCTTACTTGTTTTAGGCACTTAATC
66 AAAAGGCACTAACATTTAACCATTGAGCATATAGCTTATTTCTTACTTATTTTAGGCACTTAATC
*
79125975 ATATATATATATTGGGGCGTTTTTCCCAAAAATTTATGAATTAAAAAGAAAATGAGGGATCAAAC
131 --GTATATATATTGGGGCGTTTTTCCCAAAAATTTATGAATTAAAAAGAAAATGAGGGATCAAAC
79126040 TTGGATCTTGTGGGAAGGTTACAATTTACCCAAATTTGGAACAAAAGGGTGGCA
194 TTGGATCTTGTGGGAAGGTTACAATTTACCCAAATTTGGAACAAAAGGGTGGCA
79126094 ATTAAGGGCTTGTTAAAAAATTAGAAATAATGAAAGGGGAGGGATTCAAACCTTAGACCTCTAGG
1 ATTAAGGGCTTGTTAAAAAATTAGAAATAATGAAAGGGGAGGGATTCAAACCTTAGACCTCTAGG
* * * *
79126159 AAAAGGCACTAACGTTTAACCATTGAGCGTATAGCTTATTTCTTGCTTATTTCAGGCACTTAATC
66 AAAAGGCACTAACATTTAACCATTGAGCATATAGCTTATTTCTTACTTATTTTAGGCACTTAATC
*
79126224 GTATATATATTGGGGCGTTTTTGCCAAAAATTTATGAATTAAAAAGAAAATGAGGGATCAAACTT
131 GTATATATATTGGGGCGTTTTTCCCAAAAATTTATGAATTAAAAAGAAAATGAGGGATCAAACTT
*
79126289 GGGTCTTGTGGGAAGGTTA-AATTTTACCCAAATTTGGAACAAAAGGGTGGCA
196 GGATCTTGTGGGAAGGTTACAA-TTTACCCAAATTTGGAACAAAAGGGTGGCA
* * * ** * *
79126341 ATTAAGGG-TT-TTCCAAAAAATTAGAAATAATGAAAAGAGAGAGATTTGAACCAT-GTACCTTT
1 ATTAAGGGCTTGTT--AAAAAATTAGAAATAATGAAAGGGGAGGGATTCAAACCTTAG-ACCTCT
* * * * * *
79126403 AAGAAGAAGGCACTAACATTTAACCATTGAGCCTATAGCTCATTTATTATTTATTTTTGGCACTT
63 AGGAA-AAGGCACTAACATTTAACCATTGAGCATATAGCTTATTTCTTACTTATTTTAGGCACTT
*
79126468 AATCGTGTATATAT
127 AATCGTATATATAT
79126482 ATATATATAT
Statistics
Matches: 356, Mismatches: 27, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
245 2 0.01
246 5 0.01
247 162 0.46
248 64 0.18
249 123 0.35
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (247 bp):
ATTAAGGGCTTGTTAAAAAATTAGAAATAATGAAAGGGGAGGGATTCAAACCTTAGACCTCTAGG
AAAAGGCACTAACATTTAACCATTGAGCATATAGCTTATTTCTTACTTATTTTAGGCACTTAATC
GTATATATATTGGGGCGTTTTTCCCAAAAATTTATGAATTAAAAAGAAAATGAGGGATCAAACTT
GGATCTTGTGGGAAGGTTACAATTTACCCAAATTTGGAACAAAAGGGTGGCA
Found at i:79127297 original size:21 final size:22
Alignment explanation
Indices: 79127250--79127309 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
79127240 TTATTTTTTT
* * *
79127250 CATTTTTAATAGTATTTAAATT
1 CATTTTTAAAAATATTTAAATC
*
79127272 GA-TTTTAAAAATATTTAAATC
1 CATTTTTAAAAATATTTAAATC
79127293 CATTTTTCAAAAATATT
1 CATTTTT-AAAAATATT
79127310 AGATTTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 17 0.55
22 5 0.16
23 9 0.29
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.48
Consensus pattern (22 bp):
CATTTTTAAAAATATTTAAATC
Found at i:79127333 original size:27 final size:26
Alignment explanation
Indices: 79127294--79127348 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
79127284 ATTTAAATCC
* *
79127294 ATTTTTCAAAAATATTAG-ATTTTAAT
1 ATTTTTAAAAAATA-AAGAATTTTAAT
79127320 ATTTTTAAATAAATAAAGAATTTTAAT
1 ATTTTTAAA-AAATAAAGAATTTTAAT
79127347 AT
1 AT
79127349 ATATATTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (26 bp):
ATTTTTAAAAAATAAAGAATTTTAAT
Found at i:79131152 original size:15 final size:15
Alignment explanation
Indices: 79131132--79131186 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
79131122 CCCAACCAGC
79131132 TTCTTCCGCCGCCCA
1 TTCTTCCGCCGCCCA
* *
79131147 TTCTTCCTCCAAACCCA
1 TTCTTCCGCC--GCCCA
*
79131164 CTTCTGCCGCCGCCCA
1 -TTCTTCCGCCGCCCA
79131180 TTCTTCC
1 TTCTTCC
79131187 TCCAAACCCG
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 15 0.48
16 4 0.13
17 4 0.13
18 8 0.26
ACGTcount: A:0.11, C:0.51, G:0.09, T:0.29
Consensus pattern (15 bp):
TTCTTCCGCCGCCCA
Found at i:79131168 original size:18 final size:17
Alignment explanation
Indices: 79131143--79131195 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 17
79131133 TCTTCCGCCG
79131143 CCCATTCTTCCTCCAAA
1 CCCATTCTTCCTCCAAA
* * *
79131160 CCCACTTCTGCCGCC--G
1 CCCA-TTCTTCCTCCAAA
79131176 CCCATTCTTCCTCCAAA
1 CCCATTCTTCCTCCAAA
79131193 CCC
1 CCC
79131196 GCTTCTGCCA
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
15 8 0.30
16 4 0.15
17 7 0.26
18 8 0.30
ACGTcount: A:0.17, C:0.53, G:0.06, T:0.25
Consensus pattern (17 bp):
CCCATTCTTCCTCCAAA
Found at i:79131174 original size:33 final size:33
Alignment explanation
Indices: 79131131--79131240 Score: 132
Period size: 33 Copynumber: 3.3 Consensus size: 33
79131121 TCCCAACCAG
*
79131131 CTTCTTCCGCCGCCCATTCTTCCTCCAAACCCA
1 CTTCTGCCGCCGCCCATTCTTCCTCCAAACCCA
*
79131164 CTTCTGCCGCCGCCCATTCTTCCTCCAAACCCG
1 CTTCTGCCGCCGCCCATTCTTCCTCCAAACCCA
* ** *
79131197 CTTCTGCCACC-CCCAGCGCTCCCTCCAAACCCA
1 CTTCTGCCGCCGCCCA-TTCTTCCTCCAAACCCA
* *
79131230 TTTCAGCCGCC
1 CTTCTGCCGCC
79131241 ACCAGCTCCA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
32 4 0.06
33 62 0.94
ACGTcount: A:0.15, C:0.53, G:0.10, T:0.23
Consensus pattern (33 bp):
CTTCTGCCGCCGCCCATTCTTCCTCCAAACCCA
Done.