Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 267 of 328
Found at i:79847179 original size:30 final size:31
Alignment explanation
Indices: 79847145--79847211 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
79847135 GGCCTAAGAA
** * *
79847145 TAAATACTTAAAATTTGAGGGATTAA-AGTG
1 TAAATACGAAAAATTTGAAGGACTAATAGTG
79847175 TAAATACGAAAAATTTGAAGGACTAATAGTG
1 TAAATACGAAAAATTTGAAGGACTAATAGTG
79847206 TAAATA
1 TAAATA
79847212 TTTTAAGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.48, C:0.04, G:0.18, T:0.30
Consensus pattern (31 bp):
TAAATACGAAAAATTTGAAGGACTAATAGTG
Found at i:79849678 original size:2 final size:2
Alignment explanation
Indices: 79849671--79849704 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
79849661 CACATTCGGC
79849671 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79849705 AATGTATGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:79850317 original size:28 final size:28
Alignment explanation
Indices: 79850263--79850328 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
79850253 AGATTGGCAC
79850263 TAAGTGTGCGAGTTTAATTGTATAGCAA
1 TAAGTGTGCGAGTTTAATTGTATAGCAA
* * * *
79850291 TAGGTGTGCGAGTTTGATTAT-TAAGCAC
1 TAAGTGTGCGAGTTTAATTGTAT-AGCAA
79850319 TAAGTGTGCG
1 TAAGTGTGCG
79850329 GACTTACATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.03
28 31 0.97
ACGTcount: A:0.27, C:0.09, G:0.29, T:0.35
Consensus pattern (28 bp):
TAAGTGTGCGAGTTTAATTGTATAGCAA
Found at i:79856838 original size:21 final size:22
Alignment explanation
Indices: 79856808--79856848 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
79856798 TAGTAAAAGT
79856808 CATTTCTCTAACCA-TAAACATG
1 CATTTCTCT-ACCATTAAACATG
79856830 CATTT-TCTACCATTAAACA
1 CATTTCTCTACCATTAAACA
79856849 CAAAAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (22 bp):
CATTTCTCTACCATTAAACATG
Found at i:79863533 original size:2 final size:2
Alignment explanation
Indices: 79863481--79863514 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
79863471 GAGGAGGAAA
*
79863481 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79863515 GAATGACTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:79863882 original size:35 final size:35
Alignment explanation
Indices: 79863842--79863998 Score: 233
Period size: 35 Copynumber: 4.5 Consensus size: 35
79863832 ATGGCAAAGG
79863842 GTGAAACGTAGGTATGGTATCATCCATACTGAGTT
1 GTGAAACGTAGGTATGGTATCATCCATACTGAGTT
* * *
79863877 CTGAAACATAGGTATGGTATCATCCATACCGAGTT
1 GTGAAACGTAGGTATGGTATCATCCATACTGAGTT
* *
79863912 GTGAAACGTAGGTATGGTATAAACCATACTGAGTT
1 GTGAAACGTAGGTATGGTATCATCCATACTGAGTT
*
79863947 GTGAAACGTAGGTATGGTATTATCCATACTGAGTT
1 GTGAAACGTAGGTATGGTATCATCCATACTGAGTT
** *
79863982 AAGAAATGTAGGTATGG
1 GTGAAACGTAGGTATGG
79863999 CATTTCCCAT
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 109 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (35 bp):
GTGAAACGTAGGTATGGTATCATCCATACTGAGTT
Found at i:79864016 original size:35 final size:35
Alignment explanation
Indices: 79863844--79864016 Score: 150
Period size: 35 Copynumber: 4.9 Consensus size: 35
79863834 GGCAAAGGGT
* * * **
79863844 GAAACGTAGGTATGGTATCATCCATACTGAGTTCT
1 GAAACGTAGGTATGGCATTATCCATACCGAGTTAA
* * * **
79863879 GAAACATAGGTATGGTATCATCCATACCGAGTTGT
1 GAAACGTAGGTATGGCATTATCCATACCGAGTTAA
* * * * **
79863914 GAAACGTAGGTATGGTATAAACCATACTGAGTTGT
1 GAAACGTAGGTATGGCATTATCCATACCGAGTTAA
* *
79863949 GAAACGTAGGTATGGTATTATCCATACTGAGTTAA
1 GAAACGTAGGTATGGCATTATCCATACCGAGTTAA
* *
79863984 GAAATGTAGGTATGGCATT-TCCCATGCCGAGTT
1 GAAACGTAGGTATGGCATTAT-CCATACCGAGTT
79864017 GTCAAATTAG
Statistics
Matches: 122, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
34 1 0.01
35 121 0.99
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (35 bp):
GAAACGTAGGTATGGCATTATCCATACCGAGTTAA
Found at i:79864016 original size:70 final size:70
Alignment explanation
Indices: 79863844--79864036 Score: 208
Period size: 70 Copynumber: 2.8 Consensus size: 70
79863834 GGCAAAGGGT
* * * * * *
79863844 GAAACGTAGGTATGGTATCATCCATACTGAGTTCTGAAACATAGGTATGGTATCATCCATACCGA
1 GAAACGTAGGTATGGCATAAACCATACCGAGTTGTGAAACATAGGTATGGTATTATCCATACCGA
**
79863909 GTTGT
66 GTTAA
* * * *
79863914 GAAACGTAGGTATGGTATAAACCATACTGAGTTGTGAAACGTAGGTATGGTATTATCCATACTGA
1 GAAACGTAGGTATGGCATAAACCATACCGAGTTGTGAAACATAGGTATGGTATTATCCATACCGA
79863979 GTTAA
66 GTTAA
* *** * * *
79863984 GAAATGTAGGTATGGCATTTCCCATGCCGAGTTGTCAAA-TTAGGTATGGTATT
1 GAAACGTAGGTATGGCATAAACCATACCGAGTTGTGAAACATAGGTATGGTATT
79864037 TGAATGAGGA
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
69 13 0.12
70 93 0.88
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (70 bp):
GAAACGTAGGTATGGCATAAACCATACCGAGTTGTGAAACATAGGTATGGTATTATCCATACCGA
GTTAA
Found at i:79866046 original size:91 final size:90
Alignment explanation
Indices: 79865830--79866010 Score: 299
Period size: 91 Copynumber: 2.0 Consensus size: 90
79865820 TATAAGCTTG
* * *
79865830 AATGCTTGATTTGATAAAATTATGTCAAAATATGAAATTAAGTGTTTAGATTGTGATATATGATG
1 AATGCTTAATATGATAAAATTATGTCAAAATATGAAATTAAGTGTTTAGATTGTGATATATAATG
79865895 CTATTGATATTGTAAATGGTTGATT
66 CTATTGATATTGTAAATGGTTGATT
* *
79865920 GAATGCTTGATTTGATAAAATTATGTCAAAATATGAAATTAAGTGTTTAGATTGTGATAATATAA
1 -AATGCTTAATATGATAAAATTATGTCAAAATATGAAATTAAGTGTTTAGATTGTGAT-ATATAA
79865985 TGCTATTGATATTGTAAATGGTTGAT
64 TGCTATTGATATTGTAAATGGTTGAT
79866011 ATATGTTAAA
Statistics
Matches: 88, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
91 57 0.65
92 31 0.35
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.41
Consensus pattern (90 bp):
AATGCTTAATATGATAAAATTATGTCAAAATATGAAATTAAGTGTTTAGATTGTGATATATAATG
CTATTGATATTGTAAATGGTTGATT
Found at i:79869686 original size:29 final size:30
Alignment explanation
Indices: 79869648--79869720 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
79869638 TCTACTATGG
* * *
79869648 GAAGCGAAAATCAAGGGACCACTTTAA-CA
1 GAAGAGAAAATCAAGGAACCACTTCAACCA
*
79869677 GAAGATAAAATCAAGGAACCACTTCAACCA
1 GAAGAGAAAATCAAGGAACCACTTCAACCA
*
79869707 GAAGGGAAAATCAA
1 GAAGAGAAAATCAA
79869721 TGAATTGCTA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 23 0.62
30 14 0.38
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.12
Consensus pattern (30 bp):
GAAGAGAAAATCAAGGAACCACTTCAACCA
Found at i:79872866 original size:21 final size:22
Alignment explanation
Indices: 79872840--79872880 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
79872830 TGCTAGACAC
79872840 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
79872861 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
79872881 ATCAATTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.29, G:0.44, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:79874040 original size:44 final size:46
Alignment explanation
Indices: 79873961--79874127 Score: 150
Period size: 45 Copynumber: 3.6 Consensus size: 46
79873951 ATAGGATGCC
*
79873961 GATGCCATGTCCC-GAACATGGTCTTACACTAGCTTA-A-CTTGTA-GCT
1 GATG-CATGTCCCAG-ACAT-GTCTTACACTAGCTTACATCTCG-AGGCT
*
79874007 GATGCATGTCCCAGACATGTCTTACACTTGCTTACATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCT
* * * *
79874053 -ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTC-ACTGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA-GGCT
*
79874098 GATGCCATGTCCCAAACATGGTCTTACACT
1 GATG-CATGTCCCAGACAT-GTCTTACACT
79874128 GGCTCTCGTA
Statistics
Matches: 105, Mismatches: 7, Indels: 16
0.82 0.05 0.12
Matches are distributed among these distances:
44 16 0.15
45 51 0.49
46 15 0.14
47 13 0.12
48 10 0.10
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCT
Found at i:79874154 original size:47 final size:45
Alignment explanation
Indices: 79874053--79874178 Score: 119
Period size: 47 Copynumber: 2.7 Consensus size: 45
79874043 TCTCGAGGCT
* * *
79874053 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCACTGCCG
1 ATGCATGTCCCAAACATGTCTTACACTGGCTCTCGTAT-ACTGCCA
* *
79874099 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTA-ATGTGGGCA
1 ATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCGTATA-CT-GCCA
* * * *
79874147 ATGCATGTCCCAGAGATGTGTTACACTAGCTC
1 ATGCATGTCCCAAACATGTCTTACACTGGCTC
79874179 AGAATAGTCC
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
46 17 0.25
47 26 0.39
48 24 0.36
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
ATGCATGTCCCAAACATGTCTTACACTGGCTCTCGTATACTGCCA
Found at i:79876036 original size:24 final size:24
Alignment explanation
Indices: 79876008--79876057 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
79875998 TTATAAGAGG
* * *
79876008 ATAGAATTGAAAATGGTTTGAATA
1 ATAGAATTAAAAACGGTCTGAATA
79876032 ATAGAATTAAAAACGGTCTGAATA
1 ATAGAATTAAAAACGGTCTGAATA
79876056 AT
1 AT
79876058 GGGGCTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.04, G:0.18, T:0.30
Consensus pattern (24 bp):
ATAGAATTAAAAACGGTCTGAATA
Found at i:79876209 original size:5 final size:5
Alignment explanation
Indices: 79876199--79876246 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
79876189 TTTAATTGTG
79876199 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
79876247 GAACACGCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:79881491 original size:29 final size:30
Alignment explanation
Indices: 79881442--79881523 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 30
79881432 TTTATTAGGT
* * *
79881442 ACTAGATACTGGTGA-CTATATTA-TCAAAT
1 ACTAGGTATTGGTGATC-ATATTATTCAAAC
** *
79881471 ACTTTGTATTGGTGTTCATATTATTTCAAAC
1 ACTAGGTATTGGTGATCATATTA-TTCAAAC
79881502 ACTAGGTATTGGTGATCATATT
1 ACTAGGTATTGGTGATCATATT
79881524 TATTAGGTAC
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
29 16 0.39
30 1 0.02
31 24 0.59
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.41
Consensus pattern (30 bp):
ACTAGGTATTGGTGATCATATTATTCAAAC
Found at i:79883408 original size:11 final size:11
Alignment explanation
Indices: 79883392--79883420 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
79883382 AGTTAAATTT
79883392 TGTTCCTTTTA
1 TGTTCCTTTTA
79883403 TGTTCCTTTTA
1 TGTTCCTTTTA
79883414 TGTTCCT
1 TGTTCCT
79883421 AGCTTTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.21, G:0.10, T:0.62
Consensus pattern (11 bp):
TGTTCCTTTTA
Found at i:79885168 original size:26 final size:26
Alignment explanation
Indices: 79885131--79885184 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
79885121 ATTATTTTGA
* *
79885131 TTATTTATGCTTATTTTTTTAAAATT
1 TTATTTACGCTTAATTTTTTAAAATT
79885157 TTATTTACGCTTAATTTTTTAAAATT
1 TTATTTACGCTTAATTTTTTAAAATT
79885183 TT
1 TT
79885185 CTTATTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.63
Consensus pattern (26 bp):
TTATTTACGCTTAATTTTTTAAAATT
Found at i:79886201 original size:27 final size:26
Alignment explanation
Indices: 79886161--79886273 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
79886151 CAGCATGGCT
* *
79886161 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
* *
79886187 ACCAGATATAGATAATCGTGGCAGACCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
*
79886215 ACCAGAACAGAAATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
79886242 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
79886269 ACCAG
1 ACCAG
79886274 GACGTTTCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:79886254 original size:54 final size:54
Alignment explanation
Indices: 79886161--79886273 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
79886151 CAGCATGGCT
* * *
79886161 ACCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGACCC
1 ACCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGACCC
* * * *
79886215 ACCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCC
1 ACCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGACCC
79886269 ACCAG
1 ACCAG
79886274 GACGTTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGACCC
Found at i:79888243 original size:17 final size:17
Alignment explanation
Indices: 79888213--79888245 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
79888203 CTCTAATTCC
79888213 TTATCACCAGATGATAG
1 TTATCACCAGATGATAG
79888230 TTATCTACCA-ATGATA
1 TTATC-ACCAGATGATA
79888246 AGAATCTGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (17 bp):
TTATCACCAGATGATAG
Found at i:79901046 original size:53 final size:53
Alignment explanation
Indices: 79900961--79901064 Score: 172
Period size: 53 Copynumber: 2.0 Consensus size: 53
79900951 TTATAAGACT
* * *
79900961 TAGACAAAATTGCACCATTCGTAGAAGTATCTACTATCAATCTTGTATGTGCA
1 TAGACAAAATTGCACCATTCGCAGAAGCATCTACCATCAATCTTGTATGTGCA
*
79901014 TAGACAAAATTGCACCATTCGCAGAAGCATCTACCATCTATCTTGTATGTG
1 TAGACAAAATTGCACCATTCGCAGAAGCATCTACCATCAATCTTGTATGTG
79901065 TATTGAGACC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (53 bp):
TAGACAAAATTGCACCATTCGCAGAAGCATCTACCATCAATCTTGTATGTGCA
Found at i:79903921 original size:19 final size:19
Alignment explanation
Indices: 79903897--79903934 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
79903887 TTTATTGGTG
79903897 GTCGAAATGCTTGGTTTGT
1 GTCGAAATGCTTGGTTTGT
*
79903916 GTCGAAATGGTTGGTTTGT
1 GTCGAAATGCTTGGTTTGT
79903935 CAACAAGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.08, G:0.34, T:0.42
Consensus pattern (19 bp):
GTCGAAATGCTTGGTTTGT
Found at i:79910315 original size:43 final size:43
Alignment explanation
Indices: 79910180--79910351 Score: 147
Period size: 43 Copynumber: 4.0 Consensus size: 43
79910170 ACATATCGTA
* * * *
79910180 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATGT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGAAATCACATAT
* * *
79910223 CGAA-GCC-ACTGTCCTAGACAGGGTCTTACACG-AATTACA-ATT
1 C-AATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCACATA-T
* * * * *
79910265 ACGATGCCGATGTCCTAGACATGGTCTTACTCGAAATCACATAT
1 -CAATGCCAACGTCCCAGACATGGTCTTACACGAAATCACATAT
*
79910309 CAATGCCAACGTCCCAGACGTGGTCTTACACGAGAA-CACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGA-AATCACATAT
79910352 TAGAAATCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 10 0.10
43 80 0.78
44 12 0.12
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACGAAATCACATAT
Found at i:79910380 original size:41 final size:41
Alignment explanation
Indices: 79910326--79910408 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
79910316 AACGTCCCAG
79910326 ACGTGGTCTTACACGAGAACACATATTAGAAATCCTATGTC
1 ACGTGGTCTTACACGAGAACACATATTAGAAATCCTATGTC
79910367 ACGTGGTCTTACACGAGAACACATATTAGAAATCCTATGTC
1 ACGTGGTCTTACACGAGAACACATATTAGAAATCCTATGTC
79910408 A
1 A
79910409 TGACATATGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (41 bp):
ACGTGGTCTTACACGAGAACACATATTAGAAATCCTATGTC
Found at i:79914115 original size:40 final size:40
Alignment explanation
Indices: 79914060--79914139 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
79914050 TACGAAGTTA
*
79914060 GTTGTGTAGTTAATTAGATTTTGGTTAAGTGAAATTGCAT
1 GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
79914100 GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
1 GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
79914140 AAATTAAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.04, G:0.25, T:0.44
Consensus pattern (40 bp):
GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
Found at i:79919874 original size:28 final size:28
Alignment explanation
Indices: 79919843--79919917 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
79919833 TCAACATGTA
**
79919843 ATGCATGTTATATTTGATTCAGTGCTTT
1 ATGCATGTTATATTTGATTCAGCACTTT
*
79919871 ATGCATGTTATATTTGACTCAGCACTTT
1 ATGCATGTTATATTTGATTCAGCACTTT
* * *
79919899 ATTCATGGTATACTTGATT
1 ATGCATGTTATATTTGATT
79919918 AAGCTTAGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (28 bp):
ATGCATGTTATATTTGATTCAGCACTTT
Found at i:79923989 original size:29 final size:29
Alignment explanation
Indices: 79923950--79924024 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
79923940 GGTTGAGAGA
* *
79923950 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
79923979 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
79924008 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
79924025 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:79931275 original size:2 final size:2
Alignment explanation
Indices: 79931264--79931300 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
79931254 AGTATAGTTG
79931264 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79931301 GTATGCATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:79931878 original size:29 final size:29
Alignment explanation
Indices: 79931839--79931913 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
79931829 GGTTGAGAGA
* *
79931839 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
79931868 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
79931897 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
79931914 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:79931954 original size:2 final size:2
Alignment explanation
Indices: 79931949--79931975 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
79931939 GCGAACCCAC
79931949 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
79931976 TTTCTATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79933827 original size:16 final size:16
Alignment explanation
Indices: 79933808--79933842 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
79933798 TTAATATTGA
*
79933808 TATTATAATATATTAG
1 TATTATAACATATTAG
*
79933824 TATTATTACATATTAG
1 TATTATAACATATTAG
79933840 TAT
1 TAT
79933843 AAATTTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (16 bp):
TATTATAACATATTAG
Found at i:79940697 original size:2 final size:2
Alignment explanation
Indices: 79940690--79940716 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
79940680 AAAATGAACA
79940690 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
79940717 CTAAAATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79941241 original size:3 final size:3
Alignment explanation
Indices: 79941233--79941284 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
79941223 TTTTAAAACT
79941233 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
79941281 TAA T
1 TAA T
79941285 GCAAACAACA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:79947124 original size:5 final size:5
Alignment explanation
Indices: 79947112--79947148 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
79947102 CTTAGTTTTG
79947112 TTTA- TTTAT TTTAT TTTAT TTTA- TTTAT TTATAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TT-TAT TTT
79947149 TGTTTAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.27
5 17 0.57
6 5 0.17
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:79960828 original size:35 final size:35
Alignment explanation
Indices: 79960782--79960852 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
79960772 TTACAACACC
79960782 ACCAAAGCATAATCATAAACTTGGAGAGGCTATTG
1 ACCAAAGCATAATCATAAACTTGGAGAGGCTATTG
79960817 ACCAAAGCATAATCATAAACTTGGAGAGGCTATTG
1 ACCAAAGCATAATCATAAACTTGGAGAGGCTATTG
79960852 A
1 A
79960853 AGACCAAGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.23
Consensus pattern (35 bp):
ACCAAAGCATAATCATAAACTTGGAGAGGCTATTG
Found at i:79961731 original size:16 final size:17
Alignment explanation
Indices: 79961712--79961758 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
79961702 AAAGGGAGAA
79961712 AAAAAGAAAGAAAAG-G
1 AAAAAGAAAGAAAAGAG
*
79961728 AAAAAGAAA-AAGAGAG
1 AAAAAGAAAGAAAAGAG
79961744 AAAAAGAAAGGAAAA
1 AAAAAGAAA-GAAAA
79961759 TCTCTAATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 4 0.15
16 19 0.73
18 3 0.12
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAGAAAAGAG
Found at i:79962014 original size:58 final size:58
Alignment explanation
Indices: 79961943--79962058 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
79961933 AAGGGAAAAG
* *
79961943 AAAGCTTTGAATTGAAAAGAGAAAGATTAAGTTTAAGTGAAGAGAATAGGTAAGTACT
1 AAAGCTTTAAATTGAAAAGAGAAAGATTAAGTTCAAGTGAAGAGAATAGGTAAGTACT
*
79962001 AAAGCTTTAAATTGAAAAGAGAAAGGTTAAGTTCAAGTGAAGAGAATAGGTAAGTACT
1 AAAGCTTTAAATTGAAAAGAGAAAGATTAAGTTCAAGTGAAGAGAATAGGTAAGTACT
79962059 TAATTGAATT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.25
Consensus pattern (58 bp):
AAAGCTTTAAATTGAAAAGAGAAAGATTAAGTTCAAGTGAAGAGAATAGGTAAGTACT
Found at i:79962401 original size:20 final size:20
Alignment explanation
Indices: 79962376--79962415 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
79962366 AAAAGAAAGT
79962376 GCGTGTGAAATTAAAATGAA
1 GCGTGTGAAATTAAAATGAA
79962396 GCGTGTGAAATTAAAATGAA
1 GCGTGTGAAATTAAAATGAA
79962416 ATGTTTGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (20 bp):
GCGTGTGAAATTAAAATGAA
Found at i:79965277 original size:11 final size:11
Alignment explanation
Indices: 79965252--79965283 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
79965242 GATCATGCAA
79965252 ATATATTTCAC
1 ATATATTTCAC
79965263 --ATATTTCAC
1 ATATATTTCAC
79965272 ATATATTTCAC
1 ATATATTTCAC
79965283 A
1 A
79965284 CATCATACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATATTTCAC
Found at i:79966141 original size:17 final size:17
Alignment explanation
Indices: 79966119--79966151 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
79966109 AATAGGAAAT
79966119 AGAACAAACA-AGAAAAG
1 AGAAC-AACAGAGAAAAG
79966136 AGAACAACAGAGAAAA
1 AGAACAACAGAGAAAA
79966152 AATGGCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.70, C:0.12, G:0.18, T:0.00
Consensus pattern (17 bp):
AGAACAACAGAGAAAAG
Found at i:79967393 original size:27 final size:27
Alignment explanation
Indices: 79967341--79967394 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
79967331 TTCAATTATA
*
79967341 ATCATCATTTTACAATTTAGTCCAATT
1 ATCATCATTTTACAATTTAGCCCAATT
79967368 ATCA-CATTTTACTAATTTA-CCACAATT
1 ATCATCATTTTAC-AATTTAGCC-CAATT
79967395 CAATCCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.43
Consensus pattern (27 bp):
ATCATCATTTTACAATTTAGCCCAATT
Found at i:79969951 original size:14 final size:15
Alignment explanation
Indices: 79969931--79969971 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
79969921 GTTTTTGGAC
79969931 TTTTATGTTTTATAG
1 TTTTATGTTTTATAG
* *
79969946 -TTTATGATTTATGG
1 TTTTATGTTTTATAG
79969960 TTTTAT-TTTTAT
1 TTTTATGTTTTAT
79969972 TGGTTAAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (15 bp):
TTTTATGTTTTATAG
Found at i:79982186 original size:47 final size:47
Alignment explanation
Indices: 79982117--79982214 Score: 187
Period size: 47 Copynumber: 2.1 Consensus size: 47
79982107 ACCTAGGGCT
*
79982117 CTGATACCACCAAATGTAACACACTATACCCAGCCAGGTCGCTAAAC
1 CTGATACCACCAAATGTAACACACTATACCCAGCCAGGTCGCCAAAC
79982164 CTGATACCACCAAATGTAACACACTATACCCAGCCAGGTCGCCAAAC
1 CTGATACCACCAAATGTAACACACTATACCCAGCCAGGTCGCCAAAC
79982211 CTGA
1 CTGA
79982215 ATATTAAGAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.36, C:0.35, G:0.13, T:0.16
Consensus pattern (47 bp):
CTGATACCACCAAATGTAACACACTATACCCAGCCAGGTCGCCAAAC
Found at i:79982193 original size:22 final size:22
Alignment explanation
Indices: 79982120--79982193 Score: 71
Period size: 22 Copynumber: 3.2 Consensus size: 22
79982110 TAGGGCTCTG
79982120 ATACCACCAAATGTAACACACT
1 ATACCACCAAATGTAACACACT
**
79982142 ATACCCAGCCAGGTCGCTAA-AC-CT
1 ATA-CCA-CCAAAT-G-TAACACACT
79982166 GATACCACCAAATGTAACACACT
1 -ATACCACCAAATGTAACACACT
79982189 ATACC
1 ATACC
79982194 CAGCCAGGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
21 3 0.07
22 11 0.27
23 9 0.22
24 9 0.22
25 6 0.15
26 3 0.07
ACGTcount: A:0.39, C:0.34, G:0.09, T:0.18
Consensus pattern (22 bp):
ATACCACCAAATGTAACACACT
Found at i:79983288 original size:39 final size:39
Alignment explanation
Indices: 79983245--79983338 Score: 125
Period size: 39 Copynumber: 2.4 Consensus size: 39
79983235 TTCACTTTTG
* * *
79983245 AGCATATATCACATTACACATATAATCACATAACATTTA
1 AGCATATATCACAATACACATATAAACACATAACATTCA
* *
79983284 AGCATATATCGCAATACTCATATAAACACATAACATTCA
1 AGCATATATCACAATACACATATAAACACATAACATTCA
* *
79983323 AGCATATGTCATAATA
1 AGCATATATCACAATA
79983339 TTTAAAAACA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.29
Consensus pattern (39 bp):
AGCATATATCACAATACACATATAAACACATAACATTCA
Found at i:79985451 original size:15 final size:15
Alignment explanation
Indices: 79985433--79985473 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
79985423 TTAGAATAGA
79985433 TAGAGGAAGAAGCTC
1 TAGAGGAAGAAGCTC
79985448 TAGAGGAAGAAGCTC
1 TAGAGGAAGAAGCTC
*
79985463 TAGAGAAAGAA
1 TAGAGGAAGAA
79985474 ACAATAGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.46, C:0.10, G:0.32, T:0.12
Consensus pattern (15 bp):
TAGAGGAAGAAGCTC
Found at i:79987050 original size:13 final size:13
Alignment explanation
Indices: 79987032--79987056 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79987022 AGATTTTTGG
79987032 ACTTTTTACAAGA
1 ACTTTTTACAAGA
79987045 ACTTTTTACAAG
1 ACTTTTTACAAG
79987057 CTTTTATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
ACTTTTTACAAGA
Found at i:79996275 original size:38 final size:38
Alignment explanation
Indices: 79996186--79996288 Score: 127
Period size: 39 Copynumber: 2.7 Consensus size: 38
79996176 GAATCATAAT
* * *
79996186 AATTATAATTACCATAATTATAATAATGTTTGACCGGAA
1 AATTATAATTACAATAATTATAATAATATTGGACC-GAA
* *
79996225 AATTACAATTACAATAATTATAATAATATTGGATC-ATA
1 AATTATAATTACAATAATTATAATAATATTGGACCGA-A
*
79996263 AATTATGATTACAATAATTATAATAA
1 AATTATAATTACAATAATTATAATAA
79996289 GGATTTTGGT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
37 1 0.02
38 25 0.45
39 30 0.54
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.37
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATATTGGACCGAA
Found at i:80003055 original size:29 final size:29
Alignment explanation
Indices: 80003023--80003157 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
80003013 ATACCCTCCG
** * *
80003023 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
80003052 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
80003081 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
80003110 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
80003139 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
80003158 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:80003090 original size:58 final size:58
Alignment explanation
Indices: 80002969--80003158 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
80002959 TACTCGATTT
* * * *** *
80002969 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
80003027 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
80003085 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
80003143 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
80003159 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:80011162 original size:29 final size:29
Alignment explanation
Indices: 80011130--80011264 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
80011120 ATACCCTCCG
** * *
80011130 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
80011159 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
80011188 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
80011217 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
80011246 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
80011265 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:80011197 original size:58 final size:58
Alignment explanation
Indices: 80011076--80011265 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
80011066 TACTCGATTT
* * * *** *
80011076 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
80011134 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
80011192 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
80011250 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
80011266 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:80023346 original size:44 final size:44
Alignment explanation
Indices: 80023261--80023397 Score: 154
Period size: 46 Copynumber: 3.1 Consensus size: 44
80023251 TACACAAGTT
*
80023261 CTAACATATCT-GT-GCCGATGCCATGTCCCAAACATGGTCTTACA
1 CTAACACATCTCGTAGCCGATG-CATGTCCCAAACAT-GTCTTACA
80023305 CTAACACATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACA
1 CTAACACATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACA
*** * *
80023349 CTGGTTTACGTCTCG-AGGCCGATGCATGTCCCAGACATGTCTTACA
1 CT--AACACATCTCGTA-GCCGATGCATGTCCCAAACATGTCTTACA
80023395 CTA
1 CTA
80023398 GCTTACAATA
Statistics
Matches: 81, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
44 20 0.25
45 17 0.21
46 44 0.54
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (44 bp):
CTAACACATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACA
Found at i:80029372 original size:40 final size:40
Alignment explanation
Indices: 80029266--80029449 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
80029256 TGCTGGAAAT
* * * * * **
80029266 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
80029306 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
80029346 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
80029384 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
80029425 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
80029450 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:80037464 original size:40 final size:39
Alignment explanation
Indices: 80037299--80037482 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80037289 AAATTGAATG
* * *
80037299 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80037339 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80037379 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80037419 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80037458 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80037483 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80037507 original size:80 final size:81
Alignment explanation
Indices: 80037339--80037527 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80037329 GCTGGAAATT
* * * *
80037339 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80037404 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80037420 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80037483 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80037499 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80037528 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80040691 original size:33 final size:34
Alignment explanation
Indices: 80040649--80040715 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
80040639 GGCCTAAGCC
80040649 CAGTATCAGTGT-GGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
* *
80040682 CAGTATCAGTGTGGGCCTTAGCCTATTATAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
80040716 GTATCATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 12 0.39
34 19 0.61
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:80042475 original size:27 final size:27
Alignment explanation
Indices: 80042311--80042468 Score: 239
Period size: 27 Copynumber: 5.9 Consensus size: 27
80042301 TTACACTACA
80042311 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* * *
80042338 -GGGTGTTTCG-TAATTTTACAAATCA
1 AGGGTATTTTGATAATTTTACAAATCG
*
80042363 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
80042390 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
* *
80042417 AGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTTGATAATTTTACAAATCG
*
80042444 AGGGTGTTTTGATAATTTTACAAAT
1 AGGGTATTTTGATAATTTTACAAAT
80042469 TGGGGGTCTT
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
25 14 0.12
26 17 0.14
27 89 0.74
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGATAATTTTACAAATCG
Found at i:80042486 original size:27 final size:26
Alignment explanation
Indices: 80042311--80042488 Score: 196
Period size: 27 Copynumber: 6.7 Consensus size: 26
80042301 TTACACTACA
*
80042311 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCG-TAATTTTACAAATCG
* *
80042338 -GGGTGTTTCGTAATTTTACAAATCA
1 AGGGTATTTCGTAATTTTACAAATCG
80042363 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCG-TAATTTTACAAATCG
*
80042390 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCG-TAATTTTACAAATCG
* *
80042417 AGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGT-ATTTCGTAATTTTACAAATCG
* * *
80042444 AGGGTGTTTTGATAATTTTACAAATTG
1 AGGGTATTTCG-TAATTTTACAAATCG
* *
80042471 GGGGTCTTTCAGTAATTT
1 AGGGTATTTC-GTAATTT
80042489 CTTTATTATG
Statistics
Matches: 132, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
25 14 0.11
26 21 0.16
27 92 0.70
28 5 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (26 bp):
AGGGTATTTCGTAATTTTACAAATCG
Found at i:80042486 original size:54 final size:53
Alignment explanation
Indices: 80042311--80042488 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 53
80042301 TTACACTACA
* * *
80042311 AGGGTATTTTGATAATTTTACAAATCG-GGGTGTTTCG-TAATTTTACAAATCA
1 AGGGTATTTCG-TAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
*
80042363 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCG-TAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
* * *
80042417 AGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATTG
1 AGGGT-ATTTCGTAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
* *
80042471 GGGGTCTTTCAGTAATTT
1 AGGGTATTTC-GTAATTT
80042489 CTTTATTATG
Statistics
Matches: 111, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
52 26 0.23
53 11 0.10
54 70 0.63
55 4 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGTAATTTTACAAATCGAGGGTGTTTTGATAATTTTACAAATCG
Found at i:80042832 original size:28 final size:28
Alignment explanation
Indices: 80042800--80042863 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
80042790 TGGCCCCTTT
* * *
80042800 AGGCCCAATCTCGTTCACATGGCCTATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
80042828 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
80042856 AGGCCCAA
1 AGGCCCAA
80042864 CTACTTCCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.27, C:0.36, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:80044783 original size:39 final size:40
Alignment explanation
Indices: 80044716--80044868 Score: 139
Period size: 39 Copynumber: 3.9 Consensus size: 40
80044706 TATGGTAACC
* * * * * *
80044716 CGCACCAAGGCCTACGGGACTTAACCCGGATATCACGA-T
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACGACT
* * * *
80044755 TGTACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACGACT
* * *
80044795 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACT
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACGACT
* * * *
80044835 AGCAC-ATTGCCTTCGGGTCTTAACCCGGTTATAA
1 CGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
80044869 TTTCCAGCAT
Statistics
Matches: 91, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 53 0.58
40 38 0.42
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACGACT
Found at i:80044808 original size:40 final size:39
Alignment explanation
Indices: 80044761--80044862 Score: 132
Period size: 40 Copynumber: 2.6 Consensus size: 39
80044751 CGATTGTACA
** *
80044761 AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCAC
1 AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCAC
* *
80044800 GAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC
1 -AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCAC
* *
80044840 ATTGCCTTCGGGTCTTAACCCGG
1 AATGCCTTCGGGTCTTAGCCCGG
80044863 TTATAATTTC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 21 0.38
40 34 0.62
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTAGCAC
Found at i:80052815 original size:39 final size:40
Alignment explanation
Indices: 80052715--80052917 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
80052705 TCGAATGATG
* *
80052715 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
80052755 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
80052794 TTCCGGGCAAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
80052834 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
80052873 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
80052913 TCCGG
1 TCCGG
80052918 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 7 0.05
39 54 0.39
40 70 0.50
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:80056961 original size:43 final size:43
Alignment explanation
Indices: 80056914--80057016 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
80056904 CGAGACAGAG
* **
80056914 TCTTACAAGAAATCATAATACGATGCCAATGTCCCAGACATGT
1 TCTTACAAGAAATCACAATAAAATGCCAATGTCCCAGACATGT
* * * *
80056957 TCTTACATGTAATCACAATAAAATGCCAATGTCCTAGACATGG
1 TCTTACAAGAAATCACAATAAAATGCCAATGTCCCAGACATGT
* * *
80057000 TGTTACATGTAATCACA
1 TCTTACAAGAAATCACA
80057017 TCTCGATAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (43 bp):
TCTTACAAGAAATCACAATAAAATGCCAATGTCCCAGACATGT
Found at i:80062110 original size:31 final size:31
Alignment explanation
Indices: 80062075--80062142 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
80062065 CATAATAATT
80062075 CAATGACTTAAATAAAAAATTTTAAATAGTC
1 CAATGACTTAAATAAAAAATTTTAAATAGTC
* * * * *
80062106 CAATGACTTAAATGAGAACTTTTGAATAGTT
1 CAATGACTTAAATAAAAAATTTTAAATAGTC
80062137 CAATGA
1 CAATGA
80062143 TCATTTTGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATAAAAAATTTTAAATAGTC
Found at i:80063825 original size:27 final size:27
Alignment explanation
Indices: 80063795--80063848 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
80063785 CATCTCTATC
*
80063795 GTTAATGCAGGCAAAGTCCTTTGTTAA
1 GTTAATGCAGGAAAAGTCCTTTGTTAA
80063822 GTTAATGCAGGAAAAGTCCTTTGTTAA
1 GTTAATGCAGGAAAAGTCCTTTGTTAA
80063849 CTTCTTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (27 bp):
GTTAATGCAGGAAAAGTCCTTTGTTAA
Found at i:80070391 original size:3 final size:3
Alignment explanation
Indices: 80070385--80070431 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
80070375 TTTTACATAA
* * *
80070385 ATT ATT ATT ATT ATT ATT ATT ATT A-A ATT -TT AAT ATG ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80070431 A
1 A
80070432 AATATAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 3 0.08
3 33 0.92
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:80072372 original size:16 final size:17
Alignment explanation
Indices: 80072342--80072382 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
80072332 AAAATAGTTT
*
80072342 ATATTATAATTAAATTA
1 ATATTATAATAAAATTA
80072359 ATATT-TAATAAAATTA
1 ATATTATAATAAAATTA
80072375 AT-TTATAA
1 ATATTATAA
80072383 AATATTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 15 0.68
17 5 0.23
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATTATAATAAAATTA
Found at i:80072716 original size:25 final size:28
Alignment explanation
Indices: 80072684--80072738 Score: 89
Period size: 25 Copynumber: 2.1 Consensus size: 28
80072674 TTATAAAAAC
80072684 TAATAAATTAGTA-A-AAA-TATTTTTT
1 TAATAAATTAGTATACAAATTATTTTTT
80072709 TAATAAATTAGTATACAAATTATTTTTT
1 TAATAAATTAGTATACAAATTATTTTTT
80072737 TA
1 TA
80072739 TATTTATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 13 0.48
26 1 0.04
27 3 0.11
28 10 0.37
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (28 bp):
TAATAAATTAGTATACAAATTATTTTTT
Found at i:80074203 original size:21 final size:22
Alignment explanation
Indices: 80074166--80074206 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
80074156 CAAAATTGAC
*
80074166 TTTTAGCGGCGATTTTTAAGGT
1 TTTTAGCGGCGACTTTTAAGGT
80074188 TTTTAGCGGCG-CTTTTAAG
1 TTTTAGCGGCGACTTTTAAG
80074207 CGCCACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.17, C:0.12, G:0.27, T:0.44
Consensus pattern (22 bp):
TTTTAGCGGCGACTTTTAAGGT
Found at i:80074318 original size:44 final size:43
Alignment explanation
Indices: 80074251--80074434 Score: 273
Period size: 43 Copynumber: 4.3 Consensus size: 43
80074241 GCCGCAAAAT
* *
80074251 ACGCCGCTAAAGATCATGACCTTTAGCTG-CGCTTTTTCCACAA
1 ACGCCGCTAAAGATCAGGACCTTTAGC-GACGCTTTTCCCACAA
* *
80074294 ATGCTGCTAAAAGATCAGGACCTTTAGCGACGCTTTTCCCACAA
1 ACGCCGCT-AAAGATCAGGACCTTTAGCGACGCTTTTCCCACAA
*
80074338 ACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTCCCACAA
1 ACGCCGCTAAAGATCAGGACCTTTAGCGACGCTTTTCCCACAA
*
80074381 ACGCCGCTAAAGATCAGGACCTTTAGCGACGCTTTT-CCAAAA
1 ACGCCGCTAAAGATCAGGACCTTTAGCGACGCTTTTCCCACAA
80074423 TACGCCGCTAAA
1 -ACGCCGCTAAA
80074435 AATTATTACC
Statistics
Matches: 129, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
42 5 0.04
43 87 0.67
44 37 0.29
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
ACGCCGCTAAAGATCAGGACCTTTAGCGACGCTTTTCCCACAA
Found at i:80074429 original size:86 final size:88
Alignment explanation
Indices: 80074245--80074434 Score: 305
Period size: 87 Copynumber: 2.2 Consensus size: 88
80074235 ACAAGCGCCG
* * * * *
80074245 CAAAATACGCCGCTAAAGATCATGACCTTTAGCTGCGCTTTTTCCACAAATGCTGCTAAAAGATC
1 CAAAATACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGATC
80074310 AGGACCTTTAGCGACGCTTTTCC
66 AGGACCTTTAGCGACGCTTTTCC
*
80074333 CACAA-ACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCT-AAAGATC
1 CAAAATACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGATC
80074396 AGGACCTTTAGCGACGCTTTT-C
66 AGGACCTTTAGCGACGCTTTTCC
80074418 CAAAATACGCCGCTAAA
1 CAAAATACGCCGCTAAA
80074435 AATTATTACC
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
85 5 0.05
86 39 0.41
87 46 0.49
88 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (88 bp):
CAAAATACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGATC
AGGACCTTTAGCGACGCTTTTCC
Found at i:80074446 original size:86 final size:88
Alignment explanation
Indices: 80074245--80074448 Score: 306
Period size: 86 Copynumber: 2.4 Consensus size: 88
80074235 ACAAGCGCCG
* * * *
80074245 CAAAATACGCCGCTAAAGATCATGACCTTTAGCTGCGCTTTTTCCACAAATGCTGCTAAAAGATC
1 CAAAATACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGATC
80074310 AGGACCTTTAGCGACGCTTTTCC
66 AGGACCTTTAGCGACGCTTTTCC
* *
80074333 CACAA-ACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCT-AAAGATC
1 CAAAATACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGATC
80074396 AGGACCTTTAGCGACGCTTTT-C
66 AGGACCTTTAGCGACGCTTTTCC
* * *
80074418 CAAAATACGCCGCTAAAAATTATTACCTTTA
1 CAAAATACGCCGCTAAAGATCATGACCTTTA
80074449 AAAAATTATT
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
85 5 0.05
86 49 0.47
87 46 0.44
88 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (88 bp):
CAAAATACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGATC
AGGACCTTTAGCGACGCTTTTCC
Found at i:80075892 original size:15 final size:14
Alignment explanation
Indices: 80075868--80075898 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
80075858 TCTCTCTTGC
80075868 TTTTATCATATATA
1 TTTTATCATATATA
80075882 TTTTAATCATATATA
1 TTTT-ATCATATATA
80075897 TT
1 TT
80075899 AAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTTATCATATATA
Found at i:80079407 original size:22 final size:22
Alignment explanation
Indices: 80079382--80079429 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
80079372 TGAGATACAT
80079382 AATATATACTTTAATCATTTAA
1 AATATATACTTTAATCATTTAA
80079404 AATATATACTTTAATCATTTAA
1 AATATATACTTTAATCATTTAA
80079426 AATA
1 AATA
80079430 CACTATCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATATACTTTAATCATTTAA
Found at i:80082471 original size:23 final size:23
Alignment explanation
Indices: 80082420--80082463 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
80082410 ATGTATGGCA
*
80082420 AAAATA-AAATACATGTGTATTT
1 AAAATATACATACATGTGTATTT
*
80082442 AAAATATACATACATTTGTATT
1 AAAATATACATACATGTGTATT
80082464 ATATATATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (23 bp):
AAAATATACATACATGTGTATTT
Found at i:80082517 original size:17 final size:17
Alignment explanation
Indices: 80082482--80082522 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
80082472 GCATTTACTT
80082482 ATTATATAAGAAATAATA
1 ATTAT-TAAGAAATAATA
80082500 ATTATTAAGATAAT-ATA
1 ATTATTAAGA-AATAATA
80082517 A-TATTA
1 ATTATTA
80082523 TAATAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 5 0.23
17 9 0.41
18 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (17 bp):
ATTATTAAGAAATAATA
Found at i:80083366 original size:15 final size:15
Alignment explanation
Indices: 80083346--80083385 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80083336 GTAGTATTGA
80083346 AATTGAATTGAGTTG
1 AATTGAATTGAGTTG
**
80083361 AATTGAATTGTTTTG
1 AATTGAATTGAGTTG
80083376 AATTAGAATT
1 AATT-GAATT
80083386 TATGAGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (15 bp):
AATTGAATTGAGTTG
Found at i:80088879 original size:17 final size:18
Alignment explanation
Indices: 80088854--80088893 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
80088844 TTAATTAATT
80088854 ACAAAATTGATT-ACAAA
1 ACAAAATTGATTGACAAA
*
80088871 ACAACATTGATTGACAAA
1 ACAAAATTGATTGACAAA
80088889 A-AAAA
1 ACAAAA
80088894 AAAAGTGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.20
Consensus pattern (18 bp):
ACAAAATTGATTGACAAA
Found at i:80090302 original size:21 final size:20
Alignment explanation
Indices: 80090246--80090310 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 20
80090236 AAAATGCTAT
* *
80090246 AAAAAATTATAAAAAATGGA
1 AAAAAATTATAAAAATTAGA
80090266 AATAAACA-TATAAAAAATTCAGA
1 AA-AAA-ATTAT-AAAAATT-AGA
80090289 AAAAAATTATAAAAATTA-A
1 AAAAAATTATAAAAATTAGA
80090308 AAA
1 AAA
80090311 TATAAAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
19 4 0.11
20 3 0.08
21 14 0.37
22 13 0.34
23 4 0.11
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.22
Consensus pattern (20 bp):
AAAAAATTATAAAAATTAGA
Found at i:80090314 original size:15 final size:16
Alignment explanation
Indices: 80090290--80090319 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80090280 AAATTCAGAA
80090290 AAAAATTATAAAAATT
1 AAAAATTATAAAAATT
80090306 AAAAA-TATAAAAAT
1 AAAAATTATAAAAAT
80090320 ATATGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATTATAAAAATT
Found at i:80090316 original size:8 final size:8
Alignment explanation
Indices: 80090290--80090322 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
80090280 AAATTCAGAA
80090290 AAAAATTAT
1 AAAAA-TAT
80090299 AAAAAT-T
1 AAAAATAT
80090306 AAAAATAT
1 AAAAATAT
80090314 AAAAATAT
1 AAAAATAT
80090322 A
1 A
80090323 TGAAAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.30
8 11 0.48
9 5 0.22
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
AAAAATAT
Found at i:80090328 original size:25 final size:24
Alignment explanation
Indices: 80090290--80090337 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
80090280 AAATTCAGAA
*
80090290 AAAAATTATAAAAATTAAAAATAT
1 AAAAATTATAAAAAATAAAAATAT
* *
80090314 AAAAATATATGAAAAATGAAAATA
1 AAAAAT-TATAAAAAATAAAAATA
80090338 AAATTAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (24 bp):
AAAAATTATAAAAAATAAAAATAT
Found at i:80090412 original size:2 final size:2
Alignment explanation
Indices: 80090407--80090444 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
80090397 GAAACAGATA
80090407 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80090445 TAAGACTAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80090723 original size:20 final size:21
Alignment explanation
Indices: 80090694--80090749 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
80090684 CCATTTTTAA
*
80090694 TTTTCTAAATTTATATGTATT
1 TTTTCTAAATTTATATATATT
*
80090715 TTTTC-AAATTTTTATATATT
1 TTTTCTAAATTTATATATATT
80090735 TATTTACTATAATTT
1 T-TTT-CTA-AATTT
80090750 TTTAAGGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 14 0.48
21 8 0.28
22 1 0.03
23 1 0.03
24 5 0.17
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTCTAAATTTATATATATT
Found at i:80091613 original size:15 final size:15
Alignment explanation
Indices: 80091585--80091618 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
80091575 ATGAGGATTA
*
80091585 ATTTTATCTTATTTT
1 ATTTTATCTCATTTT
*
80091600 ATTTTCTCTCATTTT
1 ATTTTATCTCATTTT
80091615 ATTT
1 ATTT
80091619 CCATCCAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (15 bp):
ATTTTATCTCATTTT
Found at i:80091872 original size:14 final size:14
Alignment explanation
Indices: 80091828--80091876 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
80091818 TTCTATGCAC
*
80091828 CAATTAAATCGA-T
1 CAATTAATTCGATT
*
80091841 CAATTGATTCTTGATT
1 CAATTAATTC--GATT
80091857 CAATTAATTCGATT
1 CAATTAATTCGATT
80091871 CAATTA
1 CAATTA
80091877 TAATAACACT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 8 0.27
14 10 0.33
15 2 0.07
16 10 0.33
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (14 bp):
CAATTAATTCGATT
Found at i:80093093 original size:17 final size:18
Alignment explanation
Indices: 80093071--80093117 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
80093061 TCTCCGCAGA
80093071 GAAATAAAATGTAT-GAT
1 GAAATAAAATGTATCGAT
* * *
80093088 GAAATACAACGTATCTAT
1 GAAATAAAATGTATCGAT
80093106 GAAATAATAATG
1 GAAATAA-AATG
80093118 AATTTAACCA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 12 0.52
18 8 0.35
19 3 0.13
ACGTcount: A:0.51, C:0.06, G:0.15, T:0.28
Consensus pattern (18 bp):
GAAATAAAATGTATCGAT
Found at i:80093188 original size:17 final size:17
Alignment explanation
Indices: 80093163--80093200 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
80093153 TGGAGCTTTA
*
80093163 TTTGTTATGTTTGTCT-T
1 TTTGATATGTTT-TCTCT
80093180 TTTGATATGTTTTCTCT
1 TTTGATATGTTTTCTCT
80093197 TTTG
1 TTTG
80093201 TTGTATCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (17 bp):
TTTGATATGTTTTCTCT
Found at i:80095276 original size:36 final size:37
Alignment explanation
Indices: 80095229--80095302 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 37
80095219 ACTACAGGTA
*
80095229 TGATTAATCTTTTCGTGGAA-AAAAAACCCCCACTAT
1 TGATTAATCTTTTCATGGAAGAAAAAACCCCCACTAT
* **
80095265 TGATTGATCTTTTCATGGAAGAAAACCCCCCCACTAT
1 TGATTAATCTTTTCATGGAAGAAAAAACCCCCACTAT
80095302 T
1 T
80095303 TACTGCTCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
36 18 0.55
37 15 0.45
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (37 bp):
TGATTAATCTTTTCATGGAAGAAAAAACCCCCACTAT
Found at i:80098531 original size:3 final size:3
Alignment explanation
Indices: 80098523--80098568 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
80098513 AAGCTTAAAA
80098523 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
80098569 TCAAAAATCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:80100655 original size:19 final size:18
Alignment explanation
Indices: 80100627--80100669 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
80100617 CATTTAAATT
80100627 TATTAAATTT-ATTATTAAA
1 TATTAAATTTAATT-TT-AA
*
80100646 TATTATATTTAATTTTAA
1 TATTAAATTTAATTTTAA
80100664 TATTAA
1 TATTAA
80100670 TTAAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 7 0.33
19 11 0.52
20 3 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTAAATTTAATTTTAA
Found at i:80100667 original size:25 final size:25
Alignment explanation
Indices: 80100629--80100687 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
80100619 TTTAAATTTA
* * **
80100629 TTAAATTTATTATTAAATATTATAT
1 TTAATTTTAATATTAAATAAAATAT
*
80100654 TTAATTTTAATATTAATTAAAATAT
1 TTAATTTTAATATTAAATAAAATAT
*
80100679 TTTATTTTA
1 TTAATTTTA
80100688 GAAAATATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TTAATTTTAATATTAAATAAAATAT
Found at i:80107648 original size:12 final size:12
Alignment explanation
Indices: 80107607--80107650 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
80107597 TAAACAAATT
*
80107607 AGAAGGAAAAGAA
1 AGAAAGAAAA-AA
*
80107620 AGAAAGAAAAAG
1 AGAAAGAAAAAA
*
80107632 CGAAAGAAAAAA
1 AGAAAGAAAAAA
80107644 AGAAAGA
1 AGAAAGA
80107651 GAACCCACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 17 0.65
13 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAA
Found at i:80109450 original size:19 final size:21
Alignment explanation
Indices: 80109426--80109468 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
80109416 GCACCTAGGA
80109426 TGATTGT-TTTGA-CATGTTT
1 TGATTGTATTTGATCATGTTT
*
80109445 TGATTGTATTTGATCGTGTTT
1 TGATTGTATTTGATCATGTTT
80109466 TGA
1 TGA
80109469 ATTGGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.16, C:0.05, G:0.23, T:0.56
Consensus pattern (21 bp):
TGATTGTATTTGATCATGTTT
Found at i:80120608 original size:27 final size:27
Alignment explanation
Indices: 80120578--80120662 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
80120568 AAATGGAGGC
80120578 TTATAAGGTCATGTTGTCTAAATTGAA
1 TTATAAGGTCATGTTGTCTAAATTGAA
*** * * *
80120605 TTAT-TCTTCCATG-TGT-AAAATGGAGGC
1 TTATAAGGT-CATGTTGTCTAAATTGA--A
80120632 TTATAAGGTCATGTTGTCTAAATTGAA
1 TTATAAGGTCATGTTGTCTAAATTGAA
80120659 TTAT
1 TTAT
80120663 TCTTCCATGT
Statistics
Matches: 40, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
25 6 0.15
26 4 0.10
27 20 0.50
28 4 0.10
29 6 0.15
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TTATAAGGTCATGTTGTCTAAATTGAA
Found at i:80120649 original size:54 final size:54
Alignment explanation
Indices: 80120567--80120678 Score: 224
Period size: 54 Copynumber: 2.1 Consensus size: 54
80120557 TACAAGTTAC
80120567 AAAATGGAGGCTTATAAGGTCATGTTGTCTAAATTGAATTATTCTTCCATGTGT
1 AAAATGGAGGCTTATAAGGTCATGTTGTCTAAATTGAATTATTCTTCCATGTGT
80120621 AAAATGGAGGCTTATAAGGTCATGTTGTCTAAATTGAATTATTCTTCCATGTGT
1 AAAATGGAGGCTTATAAGGTCATGTTGTCTAAATTGAATTATTCTTCCATGTGT
80120675 AAAA
1 AAAA
80120679 AAGGAAAACA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
AAAATGGAGGCTTATAAGGTCATGTTGTCTAAATTGAATTATTCTTCCATGTGT
Found at i:80120671 original size:27 final size:27
Alignment explanation
Indices: 80120587--80120672 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
80120577 CTTATAAGGT
80120587 CATGTTGTCTAAATTGAATTATTCTTC
1 CATGTTGTCTAAATTGAATTATTCTTC
* * * ***
80120614 CATG-TGT-AAAATGGAGGCTTATAAGGT-
1 CATGTTGTCTAAATTGA--ATTAT-TCTTC
80120641 CATGTTGTCTAAATTGAATTATTCTTC
1 CATGTTGTCTAAATTGAATTATTCTTC
80120668 CATGT
1 CATGT
80120673 GTAAAAAAGG
Statistics
Matches: 41, Mismatches: 12, Indels: 12
0.63 0.18 0.18
Matches are distributed among these distances:
25 6 0.15
26 4 0.10
27 21 0.51
28 4 0.10
29 6 0.15
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (27 bp):
CATGTTGTCTAAATTGAATTATTCTTC
Found at i:80120745 original size:19 final size:19
Alignment explanation
Indices: 80120721--80120760 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80120711 TCCATTCCTA
80120721 ATTAAGATAGTAAAAAATG
1 ATTAAGATAGTAAAAAATG
80120740 ATTAAGATAGTAAAAAATG
1 ATTAAGATAGTAAAAAATG
80120759 AT
1 AT
80120761 GTGCTAGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
ATTAAGATAGTAAAAAATG
Found at i:80122235 original size:22 final size:19
Alignment explanation
Indices: 80122210--80122254 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 19
80122200 CCTAAGTTAT
80122210 TTTTGAGTAAATATTATATTAA
1 TTTTGAGT--ATATTAT-TTAA
*
80122232 TTTTGAGTTTATTATTTAA
1 TTTTGAGTATATTATTTAA
80122251 TTTT
1 TTTT
80122255 TGATTGGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 6 0.27
22 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60
Consensus pattern (19 bp):
TTTTGAGTATATTATTTAA
Found at i:80125224 original size:105 final size:101
Alignment explanation
Indices: 80125096--80125291 Score: 232
Period size: 105 Copynumber: 1.9 Consensus size: 101
80125086 GAATCTCATA
* * * *
80125096 GTGCCATAGCCCAGTTATGGTCTTTCCA-TTAGGATGCCATAGCCCAGCTATAGTCTTACACACA
1 GTGCCATAACCCAGTTATCGTCTTTCCACTGA-AATGCCATAGCCCAGCTATAGTCTT----ACA
*
80125160 TATATATACTGCCGTGGTCCAACCATGGTCTAACGTGCACG
61 TATATATACTGCCATGGTCCAACCATGGTCTAACGTGCACG
* * * * * *
80125201 GTGCCATAACCTAGTTATCGTCTTTTCACTGAAATGCTATAGCCCATCTATGGTCTTACATTTAT
1 GTGCCATAACCCAGTTATCGTCTTTCCACTGAAATGCCATAGCCCAGCTATAGTCTTACATATAT
*
80125266 ATATTGCCATGGTCCAACCATGGTCT
66 ATACTGCCATGGTCCAACCATGGTCT
80125292 TATCAGTCAA
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
101 31 0.40
105 45 0.58
106 2 0.03
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (101 bp):
GTGCCATAACCCAGTTATCGTCTTTCCACTGAAATGCCATAGCCCAGCTATAGTCTTACATATAT
ATACTGCCATGGTCCAACCATGGTCTAACGTGCACG
Found at i:80136571 original size:105 final size:105
Alignment explanation
Indices: 80136384--80136581 Score: 281
Period size: 105 Copynumber: 1.9 Consensus size: 105
80136374 AGGGGGAAGG
** * * *
80136384 ATAGGATATTTATCTTGATTTCTGTTGTTGTTATTGTTGTTTATTTCGACCTAGTTGTTTTGTTT
1 ATAGGATATTTATCTTGATTGATGTTGTTATTATTGCTGTTTATTTCGACCTAGTTGTTTTGTTC
* *
80136449 ACATGCATCATTCATTTTTGTTATGCTTCGCACCATACCT
66 ACATGCATCATTCATTTTGGCTATGCTTCGCACCATACCT
* * *
80136489 ATAGGATATTTATCTTGATTGATGTTGTTATTTTTGCTGTTTA-TTCTGACTTGGTTGTTTTGTT
1 ATAGGATATTTATCTTGATTGATGTTGTTATTATTGCTGTTTATTTC-GACCTAGTTGTTTTGTT
*
80136553 CACATGCATCATTTATTTTGGCTATGCTT
65 CACATGCATCATTCATTTTGGCTATGCTT
80136582 TGCATAATGT
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
104 3 0.04
105 78 0.96
ACGTcount: A:0.18, C:0.13, G:0.17, T:0.53
Consensus pattern (105 bp):
ATAGGATATTTATCTTGATTGATGTTGTTATTATTGCTGTTTATTTCGACCTAGTTGTTTTGTTC
ACATGCATCATTCATTTTGGCTATGCTTCGCACCATACCT
Found at i:80139126 original size:63 final size:62
Alignment explanation
Indices: 80139027--80139157 Score: 163
Period size: 63 Copynumber: 2.1 Consensus size: 62
80139017 ATGACCTGGG
* * * * * *
80139027 CACATGCCCGTGTATTTGGCCCGTGTGTCTCTAATTCAAAAATAGTGAGTTATATGGCTTGGA
1 CACATGCCCGTGTATCTAGCCCGTGTGCCTCTAATTCAAAAATAATGAGTTAAATGGCCT-GA
* * **
80139090 CACATGCCCGTGTCTCTAGCCTGTGTGCCTCTAATTCTTAAATAATGAGTTAAATGGCCTGA
1 CACATGCCCGTGTATCTAGCCCGTGTGCCTCTAATTCAAAAATAATGAGTTAAATGGCCTGA
80139152 CACATG
1 CACATG
80139158 GTCGTGTGAC
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
62 8 0.14
63 50 0.86
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (62 bp):
CACATGCCCGTGTATCTAGCCCGTGTGCCTCTAATTCAAAAATAATGAGTTAAATGGCCTGA
Found at i:80141432 original size:55 final size:56
Alignment explanation
Indices: 80141371--80141489 Score: 161
Period size: 56 Copynumber: 2.1 Consensus size: 56
80141361 CCTACTCAAC
* *
80141371 TAATTATTAATAATTATTTTTGTCACC-TA-TTATGAAACGATATAAAATAATTACT
1 TAATTATTAATAATTATTTTTGTC-CCTTACTTATGAAAAGATATAAAATAATCACT
* * *
80141426 TAATTATTAATAATTTTTTTTGTCCCTTACTTATGAAAAGTTATAAAATAGTCACT
1 TAATTATTAATAATTATTTTTGTCCCTTACTTATGAAAAGATATAAAATAATCACT
*
80141482 CAATTATT
1 TAATTATT
80141490 TAATTTGTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 2 0.04
55 25 0.45
56 29 0.52
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (56 bp):
TAATTATTAATAATTATTTTTGTCCCTTACTTATGAAAAGATATAAAATAATCACT
Found at i:80142214 original size:18 final size:17
Alignment explanation
Indices: 80142180--80142228 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 17
80142170 ATGTTATATG
* *
80142180 TTAAAAAATTTATAATT
1 TTAAAAAATTAAAAATT
80142197 TTAAAAAGATTAAAAATT
1 TTAAAAA-ATTAAAAATT
80142215 TTAAAAAA-TAAAAA
1 TTAAAAAATTAAAAA
80142229 AAGTGTGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 6 0.21
17 8 0.28
18 15 0.52
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
TTAAAAAATTAAAAATT
Found at i:80143799 original size:23 final size:23
Alignment explanation
Indices: 80143769--80143838 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
80143759 AAAAAATTAT
*
80143769 AAAAATTTGTAATTAATTTATAA
1 AAAAATTTGTAAATAATTTATAA
*
80143792 AAAAATTTGTAACT--TTTA-AA
1 AAAAATTTGTAAATAATTTATAA
*
80143812 AAAAA-TTGTAAAAAATATTATAA
1 AAAAATTTGTAAATAAT-TTATAA
80143835 AAAA
1 AAAA
80143839 TTATAAAATC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 6 0.15
20 7 0.17
21 5 0.12
22 3 0.08
23 19 0.47
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (23 bp):
AAAAATTTGTAAATAATTTATAA
Found at i:80143976 original size:16 final size:15
Alignment explanation
Indices: 80143946--80143982 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
80143936 GTGGAGAGGT
80143946 TACATACATCATACA
1 TACATACATCATACA
*
80143961 TACATGCATGCATACA
1 TACATACAT-CATACA
80143977 TACATA
1 TACATA
80143983 TTCACTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.43, C:0.24, G:0.05, T:0.27
Consensus pattern (15 bp):
TACATACATCATACA
Found at i:80144258 original size:8 final size:9
Alignment explanation
Indices: 80144242--80144376 Score: 66
Period size: 9 Copynumber: 15.0 Consensus size: 9
80144232 ATGGGATACG
80144242 ATAATTTTT
1 ATAATTTTT
80144251 ATAATTTTT
1 ATAATTTTT
* *
80144260 TTACGAATTTT
1 ATA--ATTTTT
80144271 AT--TTTTT
1 ATAATTTTT
* *
80144278 A-ACTTTAT
1 ATAATTTTT
*
80144286 A-AAATTTT
1 ATAATTTTT
*
80144294 ATTA-TTTT
1 ATAATTTTT
* *
80144302 ATTATATTT
1 ATAATTTTT
*
80144311 CTAATATTTT
1 ATAAT-TTTT
80144321 ATAATATTTT
1 ATAAT-TTTT
*
80144331 ATGATTTTT
1 ATAATTTTT
80144340 ATAAATTTTT
1 AT-AATTTTT
*
80144350 TTAATTTTT
1 ATAATTTTT
*
80144359 AATAACTTTT
1 -ATAATTTTT
80144369 A-AATTTTT
1 ATAATTTTT
80144377 TTTAAAAATT
Statistics
Matches: 97, Mismatches: 20, Indels: 19
0.71 0.15 0.14
Matches are distributed among these distances:
7 5 0.05
8 24 0.25
9 32 0.33
10 30 0.31
11 6 0.06
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (9 bp):
ATAATTTTT
Found at i:80144339 original size:19 final size:18
Alignment explanation
Indices: 80144281--80144348 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 18
80144271 ATTTTTTAAC
*
80144281 TTTATAAAATTTTAT-TAT
1 TTTATAATATTTTATAT-T
*
80144299 TTTATTATATTTCTA-ATAT
1 TTTATAATATTT-TATAT-T
80144318 TTTATAATATTTTATGATT
1 TTTATAATATTTTAT-ATT
80144337 TTTATAA-ATTTT
1 TTTATAATATTTT
80144349 TTTAATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
18 17 0.40
19 24 0.56
20 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (18 bp):
TTTATAATATTTTATATT
Found at i:80144349 original size:19 final size:19
Alignment explanation
Indices: 80144317--80144406 Score: 60
Period size: 19 Copynumber: 4.7 Consensus size: 19
80144307 ATTTCTAATA
80144317 TTTTAT-AATATTTTATGAT
1 TTTTATAAAT-TTTTATGAT
* *
80144336 TTTTATAAATTTTTTTAAT
1 TTTTATAAATTTTTATGAT
* * **
80144355 TTTTAATAACTTTTAAATTTT
1 TTTT-ATAAATTTT-TATGAT
* *
80144376 TTTTAAAAATTTAT-TGAT
1 TTTTATAAATTTTTATGAT
80144394 TTTT-TAAATTTTT
1 TTTTATAAATTTTT
80144407 TTATCACATA
Statistics
Matches: 53, Mismatches: 15, Indels: 8
0.70 0.20 0.11
Matches are distributed among these distances:
17 7 0.13
18 6 0.11
19 17 0.32
20 17 0.32
21 6 0.11
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTATAAATTTTTATGAT
Found at i:80144349 original size:29 final size:29
Alignment explanation
Indices: 80144281--80144406 Score: 84
Period size: 29 Copynumber: 4.4 Consensus size: 29
80144271 ATTTTTTAAC
* * *
80144281 TTTATAAAATTTTAT--TATTTTATTATA
1 TTTATAAATTTTTATAATATTTTATGATT
*
80144308 TTTCT-AATATTTTATAATATTTTATGATT
1 TTTATAAAT-TTTTATAATATTTTATGATT
* * *
80144337 TTTATAAATTTTTTTAAT-TTTTAATAACT
1 TTTATAAATTTTTATAATATTTT-ATGATT
* * * *
80144366 TTTA-AATTTTTTTTAAAAATTTATTGATT
1 TTTATAAATTTTTATAATATTTTA-TGATT
80144395 TTT-TAAATTTTT
1 TTTATAAATTTTT
80144407 TTATCACATA
Statistics
Matches: 77, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
26 2 0.03
27 10 0.13
28 16 0.21
29 46 0.60
30 3 0.04
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (29 bp):
TTTATAAATTTTTATAATATTTTATGATT
Found at i:80145001 original size:25 final size:25
Alignment explanation
Indices: 80144973--80145024 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
80144963 ATGAGAATAT
80144973 TTTTATTTTCTACCATATTACTAAA
1 TTTTATTTTCTACCATATTACTAAA
80144998 TTTTATTTTCTACCATATTACTAAA
1 TTTTATTTTCTACCATATTACTAAA
80145023 TT
1 TT
80145025 GATATTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTTATTTTCTACCATATTACTAAA
Found at i:80146453 original size:34 final size:35
Alignment explanation
Indices: 80146388--80146454 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
80146378 TCAAATAGAT
* * * *
80146388 CAATACGGTAGCATTTAATTATGCTTTTAACAGAA
1 CAATACGGTAACAATCAATTATGCTTATAACAGAA
80146423 CAATACGGTAACAATCAA-TATGCTTATAACAG
1 CAATACGGTAACAATCAATTATGCTTATAACAG
80146455 TTTAATACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (35 bp):
CAATACGGTAACAATCAATTATGCTTATAACAGAA
Found at i:80147881 original size:3 final size:3
Alignment explanation
Indices: 80147873--80147930 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
80147863 TCTTTTTACC
80147873 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
80147921 TTA TTA TTA T
1 TTA TTA TTA T
80147931 ACATGAAGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:80149112 original size:3 final size:3
Alignment explanation
Indices: 80149100--80149132 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
80149090 AACAAATTAT
80149100 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
80149133 TTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:80149137 original size:3 final size:3
Alignment explanation
Indices: 80149131--80149175 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
80149121 ATAATAATAA
80149131 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80149176 AATTTAATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:80149466 original size:23 final size:24
Alignment explanation
Indices: 80149405--80149459 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
80149395 ATGATTTTCG
*
80149405 TTATTATTTGATACGTT--TAGTTA
1 TTATTATTTGATA-TTTGATAGTTA
80149428 TTATTATTTGATATTTGATAGTT-
1 TTATTATTTGATATTTGATAGTTA
80149451 TTATTATTT
1 TTATTATTT
80149460 TTTATTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 2 0.07
23 22 0.76
24 5 0.17
ACGTcount: A:0.25, C:0.02, G:0.11, T:0.62
Consensus pattern (24 bp):
TTATTATTTGATATTTGATAGTTA
Found at i:80151049 original size:2 final size:2
Alignment explanation
Indices: 80151042--80151080 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
80151032 AATCTCATGG
80151042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80151081 CAAACCAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.