Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 268 of 328
Found at i:80151674 original size:40 final size:39
Alignment explanation
Indices: 80151576--80151766 Score: 238
Period size: 40 Copynumber: 4.7 Consensus size: 39
80151566 ACTTGAATTT
* *
80151576 TCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTTAA
1 TCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTCAA
80151616 TCCCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 T--CGCACACTAAGTGCCATACATAGCCGAAGCTATCTC-AA
* * *
80151658 TCGCACACTAAGTGCCATTCATAGTCGAAGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATC-TCAA
* * *
80151698 TCACACACTAAGTGCTATACATAACCGAAGCTATCTTCAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATC-TCAA
* *
80151738 TCGTACACTAAGTGCCATACATAGTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAA
80151767 TTGTCGTCAA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
40 93 0.71
41 20 0.15
42 18 0.14
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (39 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAA
Found at i:80151718 original size:80 final size:80
Alignment explanation
Indices: 80151576--80151766 Score: 269
Period size: 80 Copynumber: 2.4 Consensus size: 80
80151566 ACTTGAATTT
* * *
80151576 TCGCACACTAAGTGCCAATACATAGCCGAAGCTATTTTAATCCCGCACACTAAGTGCCATACATA
1 TCGCACACTAAGTGCC-ATACATAGTCGAAGCTATTTGAAT-CCACACACTAAGTGCCATACATA
*
80151641 GCCGAAGCTATC-TCAAA
64 ACCGAAGCTATCTTC-AA
* *
80151658 TCGCACACTAAGTGCCATTCATAGTCGAAGCTATCTTGAAT-CACACACTAAGTGCTATACATAA
1 TCGCACACTAAGTGCCATACATAGTCGAAGCTAT-TTGAATCCACACACTAAGTGCCATACATAA
80151722 CCGAAGCTATCTTCAA
65 CCGAAGCTATCTTCAA
*
80151738 TCGTACACTAAGTGCCATACATAGTCGAA
1 TCGCACACTAAGTGCCATACATAGTCGAA
80151767 TTGTCGTCAA
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
80 60 0.61
81 18 0.18
82 21 0.21
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATACATAGTCGAAGCTATTTGAATCCACACACTAAGTGCCATACATAAC
CGAAGCTATCTTCAA
Found at i:80159333 original size:40 final size:40
Alignment explanation
Indices: 80159234--80159422 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
80159224 TTGAATTCTT
* *
80159234 GCACACTAAATGCCAATACATAGCCGAAGCTAT-TTTAATCCC
1 GCACACTAAGTGCC-ATACATAGCCGAAGCTATCTTGAAT--C
* * * *
80159276 GCACACTGAGTGCCATACATAGTCGAAGCTGTCTCGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
*
80159316 GCACACTAAGTGTCATACATAGCCGAAGCTATCTTGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
* * * *
80159356 GCACACTAAGTGCCGTACACAACTGAAGCTATCTTGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
80159396 GCACACTAAGTGCCATACATAGCCGAA
1 GCACACTAAGTGCCATACATAGCCGAA
80159423 TTGTCGTCAA
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 94 0.75
41 16 0.13
42 16 0.13
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATC
Found at i:80163305 original size:23 final size:22
Alignment explanation
Indices: 80163279--80163342 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
80163269 TATGTTTCGC
80163279 ATTAATATTTATATATTTTTATA
1 ATTAA-ATTTATATATTTTTATA
* * *
80163302 ATTAAATTTAAATAAATTATATA
1 ATTAAATTTATAT-ATTTTTATA
* *
80163325 TTTAAATTTATTTATTTT
1 ATTAAATTTATATATTTT
80163343 AAATGTAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
22 10 0.31
23 22 0.69
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTAAATTTATATATTTTTATA
Found at i:80163670 original size:18 final size:18
Alignment explanation
Indices: 80163644--80163688 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
80163634 ATGTGCATAA
*
80163644 TTAAATTAAAATAAAATT
1 TTAATTTAAAATAAAATT
***
80163662 TTAATTTAAAATTTTATT
1 TTAATTTAAAATAAAATT
80163680 TTAATTTAA
1 TTAATTTAA
80163689 TTAGTACAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATTTAAAATAAAATT
Found at i:80163977 original size:17 final size:17
Alignment explanation
Indices: 80163955--80163987 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80163945 ACTGTTACAA
80163955 ATATAA-ATACAATATAC
1 ATATAATATA-AATATAC
80163972 ATATAATATAAATATA
1 ATATAATATAAATATA
80163988 TATCTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
ATATAATATAAATATAC
Found at i:80163986 original size:11 final size:11
Alignment explanation
Indices: 80163954--80163987 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
80163944 CACTGTTACA
*
80163954 AATATAAATAC
1 AATATAAATAT
*
80163965 AATATACATAT
1 AATATAAATAT
80163976 AATATAAATAT
1 AATATAAATAT
80163987 A
1 A
80163988 TATCTAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (11 bp):
AATATAAATAT
Found at i:80165427 original size:14 final size:13
Alignment explanation
Indices: 80165404--80165433 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
80165394 ATGTTTTGGC
80165404 AAAAAAAAAAAGA
1 AAAAAAAAAAAGA
80165417 AAAAAAGAAAAAGA
1 AAAAAA-AAAAAGA
80165431 AAA
1 AAA
80165434 TACATGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAGA
Found at i:80177718 original size:20 final size:20
Alignment explanation
Indices: 80177695--80177764 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
80177685 CTTATTAAAA
*
80177695 CATAACATATTGTATCATAT
1 CATAACATATTGTAACATAT
* *
80177715 CATATCAT-TTCGTAACATAG
1 CATAACATATT-GTAACATAT
*
80177735 CATAACATAGTGTAACATAT
1 CATAACATATTGTAACATAT
*
80177755 CATAGCATAT
1 CATAACATAT
80177765 CATGTACTAC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.05
20 37 0.93
21 1 0.03
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (20 bp):
CATAACATATTGTAACATAT
Found at i:80181763 original size:20 final size:21
Alignment explanation
Indices: 80181727--80181782 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
80181717 TACTATGGAG
* *
80181727 AAAAAGAAATAAA-AAAGC-A
1 AAAAAAAAAAAAAGAAAGCGA
80181746 AAAAAAAAAAAAAGAAAGCGA
1 AAAAAAAAAAAAAGAAAGCGA
*
80181767 AAAAAAAAGAAAAGAA
1 AAAAAAAAAAAAAGAA
80181783 CGAATAAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 11 0.34
20 5 0.16
21 16 0.50
ACGTcount: A:0.82, C:0.04, G:0.12, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAAAAAGAAAGCGA
Found at i:80182657 original size:22 final size:22
Alignment explanation
Indices: 80182615--80182666 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
80182605 TAATTAATTT
80182615 AAATTATATTTTAAAAAAGAA-AA
1 AAATT-TA-TTTAAAAAAGAATAA
* *
80182638 ATATTTATTTAACAAGAGAATAA
1 AAATTTATTTAA-AAAAGAATAA
80182661 AAATTT
1 AAATTT
80182667 CCCAACATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 5 0.21
22 8 0.33
23 11 0.46
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.35
Consensus pattern (22 bp):
AAATTTATTTAAAAAAGAATAA
Found at i:80190121 original size:56 final size:56
Alignment explanation
Indices: 80190039--80190158 Score: 138
Period size: 56 Copynumber: 2.1 Consensus size: 56
80190029 GCTCGTACGG
* * * *
80190039 GTAATCCTGATATAAGCTCTCTAGCATATGTTACA-ATTAGGATTTAG-TTGGACTA
1 GTAATCCTAATATAAGCTCTCTAGCATAAGTTACATA-AAGGATTTAGCCTGGACTA
* *
80190094 GTAATCCTAAT-TGAGCTCTTCTGAGCATAAGTTACATAAAGGATTTAGCCTGGACTG
1 GTAATCCTAATATAAGCTC-TCT-AGCATAAGTTACATAAAGGATTTAGCCTGGACTA
80190151 GTAATCCT
1 GTAATCCT
80190159 CTAATATGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
54 6 0.11
55 13 0.24
56 21 0.38
57 15 0.27
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (56 bp):
GTAATCCTAATATAAGCTCTCTAGCATAAGTTACATAAAGGATTTAGCCTGGACTA
Found at i:80191750 original size:30 final size:30
Alignment explanation
Indices: 80191714--80191775 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
80191704 ATAATTTGTG
* *
80191714 ATAGTGTGATGTCTCCTGATCTTTTTAAAT
1 ATAGTGTGATGTCTCCTGATCATTTGAAAT
80191744 ATAGTGTGATGTCTCCTGATCATTTGAAAT
1 ATAGTGTGATGTCTCCTGATCATTTGAAAT
80191774 AT
1 AT
80191776 GTTTTTCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.44
Consensus pattern (30 bp):
ATAGTGTGATGTCTCCTGATCATTTGAAAT
Found at i:80195205 original size:42 final size:38
Alignment explanation
Indices: 80195153--80195234 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 38
80195143 TTGAAATTTC
* *
80195153 AATCAAAACTTTCAATTCTGTTTTTTATTTTATTTTTTTCCA
1 AATCAAAACTTTAAATTC--TATTTT-TTTTA-TTTTTTCCA
80195195 AATCAAAACTTTAAATTCTATTTTTTTTATTTTTTCCA
1 AATCAAAACTTTAAATTCTATTTTTTTTATTTTTTCCA
80195233 AA
1 AA
80195235 GTATGCAGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
38 11 0.29
39 5 0.13
40 5 0.13
42 17 0.45
ACGTcount: A:0.30, C:0.13, G:0.01, T:0.55
Consensus pattern (38 bp):
AATCAAAACTTTAAATTCTATTTTTTTTATTTTTTCCA
Found at i:80199247 original size:29 final size:29
Alignment explanation
Indices: 80199214--80199287 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
80199204 CCTTCGAGCT
80199214 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
80199243 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80199272 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80199288 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80199248 original size:58 final size:58
Alignment explanation
Indices: 80199155--80199287 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
80199145 ATACTCGATT
* * * * *
80199155 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
80199213 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
80199271 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
80199288 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:80207116 original size:29 final size:29
Alignment explanation
Indices: 80207083--80207156 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
80207073 CCTTCGAGCT
80207083 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
80207112 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80207141 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80207157 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80207117 original size:58 final size:58
Alignment explanation
Indices: 80207024--80207156 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
80207014 ATACTCGATT
* * * * *
80207024 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
80207082 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
80207140 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
80207157 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:80211576 original size:5 final size:5
Alignment explanation
Indices: 80211566--80211590 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
80211556 CTAATTTTTA
80211566 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
80211591 ATTTATTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:80213265 original size:10 final size:10
Alignment explanation
Indices: 80213250--80213299 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
80213240 TAATTTTAGG
80213250 ATTTAT-TTT
1 ATTTATCTTT
80213259 CATTTATCTTT
1 -ATTTATCTTT
*
80213270 AATTATCTTT
1 ATTTATCTTT
80213280 ATTTAT-TTGT
1 ATTTATCTT-T
*
80213290 AATTATCTTT
1 ATTTATCTTT
80213300 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:80213283 original size:20 final size:20
Alignment explanation
Indices: 80213260--80213299 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
80213250 ATTTATTTTC
80213260 ATTTATCTT-TAATTATCTTT
1 ATTTAT-TTGTAATTATCTTT
80213280 ATTTATTTGTAATTATCTTT
1 ATTTATTTGTAATTATCTTT
80213300 TAGAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (20 bp):
ATTTATTTGTAATTATCTTT
Found at i:80214108 original size:40 final size:41
Alignment explanation
Indices: 80214032--80214108 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
80214022 ATGAAATTTC
*
80214032 AATCAAAACTTTCAATTCTGTTTTTTATTTTATTTTTTCCA
1 AATCAAAACTTTAAATTCTGTTTTTTATTTTATTTTTTCCA
80214073 AATCAAAACTTTAAATTCTGTTTTTT-TTTTATTTTT
1 AATCAAAACTTTAAATTCTGTTTTTTATTTTATTTTT
80214109 CCTAGGTACG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 10 0.29
41 25 0.71
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (41 bp):
AATCAAAACTTTAAATTCTGTTTTTTATTTTATTTTTTCCA
Found at i:80214823 original size:39 final size:39
Alignment explanation
Indices: 80214779--80214854 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
80214769 GTTAGTTCAA
*
80214779 CCTAAATCGGGTAAGGAATTTATAATTTACAGTGATGAT
1 CCTAAATCGGGTAAGGAATTTATAATTTACAATGATGAT
*
80214818 CCTAAATCGGGTAAGGAATTTATAATTTTCAATGATG
1 CCTAAATCGGGTAAGGAATTTATAATTTACAATGATG
80214855 CGTCATTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (39 bp):
CCTAAATCGGGTAAGGAATTTATAATTTACAATGATGAT
Found at i:80231539 original size:79 final size:80
Alignment explanation
Indices: 80231404--80231666 Score: 353
Period size: 79 Copynumber: 3.3 Consensus size: 80
80231394 TCGAATGATG
* *
80231404 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
80231468 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
80231484 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
80231547 TGTGCGAGTTACT-AA
65 TGTGCGAGTTACTAAA
* * **
80231562 TCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCG-AGGCAT
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGAT-CCGAAGGCAT
80231624 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTA-AA
*
80231642 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80231667 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
78 48 0.29
79 89 0.54
80 20 0.12
81 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:80231673 original size:40 final size:40
Alignment explanation
Indices: 80231404--80231666 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
80231394 TCGAATGATG
* * *
80231404 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
80231444 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80231484 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80231523 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80231562 TCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80231602 TCCGGGTTAAGTCCCG-AGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80231642 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80231667 AACGAGTAGC
Statistics
Matches: 204, Mismatches: 10, Indels: 18
0.88 0.04 0.08
Matches are distributed among these distances:
39 107 0.52
40 89 0.44
41 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80239897 original size:119 final size:121
Alignment explanation
Indices: 80239633--80239897 Score: 328
Period size: 119 Copynumber: 2.2 Consensus size: 121
80239623 TCGAATGATG
*
80239633 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATT
* *
80239697 TGTGCGAGTTACTAAATCTGGACTAAGATCCGAAGGCATTTGTGCCAGTTACTAAA
66 GGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCCAGTTACTAAA
* * * * *
80239753 TCCGGACTAAGAT-CTGAAGGCATTTGTGC-GAGTTACTA-ATCCCGGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTATAT-CCGGACTAAGACCCGAAGGCA
** *
80239814 TTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
64 TTGGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCCAGTTACTA-AA
* *
80239873 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80239898 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
118 2 0.02
119 79 0.64
120 35 0.28
121 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATT
GGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCCAGTTACTAAA
Found at i:80239904 original size:40 final size:40
Alignment explanation
Indices: 80239633--80239897 Score: 310
Period size: 40 Copynumber: 6.7 Consensus size: 40
80239623 TCGAATGATG
* * *
80239633 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
80239673 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
80239713 TCTGGACTAAGAT-CCGAAGGCATTTGTGCCAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80239753 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80239792 TCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80239832 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
80239873 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80239898 AACGAGTAGC
Statistics
Matches: 201, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
39 34 0.17
40 157 0.78
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80239928 original size:79 final size:78
Alignment explanation
Indices: 80239636--80239930 Score: 287
Period size: 80 Copynumber: 3.7 Consensus size: 78
80239626 AATGATGTCC
* * * *
80239636 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGA-TCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-TTAA-ATTCCGAAGGCATTTG
80239699 TGCGAGTTACTAAATCT
63 TGCGAGTTACTAAA-CT
* * * *
80239716 GGACTAAGAT-CCGAAGGCATTTGTGCCAGTTACTAAATCCGGACTAAGA-TCTGAAGGCATTTG
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG-TTAA-ATTCCGAAGGCATTTG
* *
80239779 TGCGAGTTACTAATCCC
63 TGCGAGTTACTAA-ACT
* * *
80239796 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC-GGTTAAATTCCGAAGGCATTTGTG
80239860 CGAGTTACTATAACT
65 CGAGTTACTA-AACT
* ** * *
80239875 GGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCAGTTAAATTCCGAAGG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGTTAAATTCCGAAGG
80239931 TACGTGATTC
Statistics
Matches: 182, Mismatches: 24, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
79 78 0.43
80 96 0.53
81 8 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (78 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAATTCCGAAGGCATTTGTGC
GAGTTACTAAACT
Found at i:80248157 original size:22 final size:21
Alignment explanation
Indices: 80248116--80248157 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80248106 AGCTAGAATA
*
80248116 TTGATACATTAGGAAAATATT
1 TTGATACATTAGAAAAATATT
*
80248137 TTGATACCTTAAGAAAAATAT
1 TTGATACATT-AGAAAAATAT
80248158 CGATACCGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (21 bp):
TTGATACATTAGAAAAATATT
Found at i:80248481 original size:27 final size:28
Alignment explanation
Indices: 80248451--80248524 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 28
80248441 TAGTTTAATA
80248451 GAAATGGAAGCCTTTGTGGTAATCTAT-
1 GAAATGGAAGCCTTTGTGGTAATCTATG
** *
80248478 GAAATGGAAAACTTTGTGGTGATCTATG
1 GAAATGGAAGCCTTTGTGGTAATCTATG
*
80248506 GAAA-GGAATGCTTTTGTGG
1 GAAATGGAA-GCCTTTGTGG
80248525 CTTATTCTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
27 28 0.72
28 11 0.28
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.32
Consensus pattern (28 bp):
GAAATGGAAGCCTTTGTGGTAATCTATG
Found at i:80250240 original size:27 final size:27
Alignment explanation
Indices: 80250210--80250310 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
80250200 ATGTGTGTCT
* * *
80250210 AACTTTGAAGGAATAGTACACATGGAA
1 AACTCTGAAAGAATAGTACATATGGAA
* * * * * **
80250237 AACTCTAAAAGAACAATGCGTATGGCG
1 AACTCTGAAAGAATAGTACATATGGAA
*
80250264 AACACTGAAAGAATAGTACATATGGAA
1 AACTCTGAAAGAATAGTACATATGGAA
* *
80250291 AACTTTGAAGGAATAGTACA
1 AACTCTGAAAGAATAGTACA
80250311 AATGATGAAC
Statistics
Matches: 53, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.21
Consensus pattern (27 bp):
AACTCTGAAAGAATAGTACATATGGAA
Found at i:80259271 original size:22 final size:21
Alignment explanation
Indices: 80259241--80259281 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
80259231 TTTTGAAACA
80259241 GGGCACACGCCCGTGTGGCAG
1 GGGCACACGCCCGTGTGGCAG
**
80259262 GGGCGACACGCTTGTGTGGC
1 GGGC-ACACGCCCGTGTGGC
80259282 CTTCTTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.12, C:0.29, G:0.44, T:0.15
Consensus pattern (21 bp):
GGGCACACGCCCGTGTGGCAG
Found at i:80260550 original size:49 final size:48
Alignment explanation
Indices: 80260490--80260708 Score: 204
Period size: 49 Copynumber: 4.6 Consensus size: 48
80260480 ATCTAAGTCA
*
80260490 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACGTTGAGGCTG
1 ATGCCATGTCCCAGATAGGTCTTACACTGACTTCCATAC-TTGAGGCTG
* * * *
80260539 ATGCCATGTCCC-GACAGGTCTTACACTGGCTCTCACTTA-TCT-ATG-TCG
1 ATGCCATGTCCCAGATAGGTCTTACACTGACT-TC-CATACT-TGAGGCT-G
* * * **
80260587 ATGCCATGTCCCAGATAGGTCTTACACTGA----CACACCTCAAACTG
1 ATGCCATGTCCCAGATAGGTCTTACACTGACTTCCATACTTGAGGCTG
* *
80260631 ATGCCATGTCCCAGATAGGTCTTACA-TTAGCTTGCATATCTTGAGGCTG
1 ATGCCATGTCCCAGATAGGTCTTACACTGA-CTTCCATA-CTTGAGGCTG
80260680 ATGCCATGTCCCAGATAGGTCTTACACTG
1 ATGCCATGTCCCAGATAGGTCTTACACTG
80260709 GCTCTCATCT
Statistics
Matches: 138, Mismatches: 17, Indels: 29
0.75 0.09 0.16
Matches are distributed among these distances:
43 5 0.04
44 28 0.20
45 1 0.01
47 1 0.01
48 37 0.27
49 62 0.45
50 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGATAGGTCTTACACTGACTTCCATACTTGAGGCTG
Found at i:80260736 original size:49 final size:49
Alignment explanation
Indices: 80260460--80260756 Score: 183
Period size: 49 Copynumber: 6.2 Consensus size: 49
80260450 TTCCAAACAT
*** * * *
80260460 GGTCTTACACTGGCTCTCA--TATCTAAGTCAATGCCATGTCCCAGACA
1 GGTCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGATA
* * *
80260507 GGTCTTACACTGACT-TCCATACGT-T-GAG-GCTGATGCCATGTCCC-GACA
1 GGTCTTACACTGGCTCT-CAT-C-TATCG-GTGCCGATGCCATGTCCCAGATA
** *
80260555 GGTCTTACACTGGCTCTCA-CTTATCTATGTCGATGCCATGTCCCAGATA
1 GGTCTTACACTGGCTCTCATC-TATCGGTGCCGATGCCATGTCCCAGATA
* * * * * *
80260604 GGTCTTACACTGACACACCTCAAAC--T---GATGCCATGTCCCAGATA
1 GGTCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGATA
* * * * * *
80260648 GGTCTTACATTAGCT-TGCATATCTTGAG-GCTGATGCCATGTCCCAGATA
1 GGTCTTACACTGGCTCT-CATCTATCG-GTGCCGATGCCATGTCCCAGATA
* * *
80260697 GGTCTTACACTGGCTCTCATCTATCGGTGCCGATACCATGTCTCAGACA
1 GGTCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGATA
80260746 GGTCTTACACT
1 GGTCTTACACT
80260757 ACCATACACA
Statistics
Matches: 190, Mismatches: 39, Indels: 40
0.71 0.14 0.15
Matches are distributed among these distances:
44 31 0.16
46 3 0.02
47 18 0.09
48 35 0.18
49 99 0.52
50 3 0.02
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
GGTCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGATA
Found at i:80268655 original size:27 final size:27
Alignment explanation
Indices: 80268624--80268696 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
80268614 CACGCTGAAA
*
80268624 AAATGGAAG-CTGTTGTGGCAGTATATG
1 AAATGGAAGACT-TTGTGGCAATATATG
*
80268651 AAATGGAAGACTTTGTGGCAATTTATG
1 AAATGGAAGACTTTGTGGCAATATATG
*
80268678 AAATGGAAGCCTTTGTGGC
1 AAATGGAAGACTTTGTGGC
80268697 GATCTATGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
27 40 0.95
28 2 0.05
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (27 bp):
AAATGGAAGACTTTGTGGCAATATATG
Found at i:80268712 original size:27 final size:27
Alignment explanation
Indices: 80268624--80268712 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
80268614 CACGCTGAAA
* *
80268624 AAATGGAAG-CTGTTGTGGCAGTATATG
1 AAATGGAAGACT-TTGTGGCAATCTATG
*
80268651 AAATGGAAGACTTTGTGGCAATTTATG
1 AAATGGAAGACTTTGTGGCAATCTATG
* *
80268678 AAATGGAAGCCTTTGTGGCGATCTATGG
1 AAATGGAAGACTTTGTGGCAATCTAT-G
80268706 AAA-GGAA
1 AAATGGAA
80268713 CGTTTTCATG
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 49 0.89
28 6 0.11
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (27 bp):
AAATGGAAGACTTTGTGGCAATCTATG
Found at i:80268877 original size:27 final size:27
Alignment explanation
Indices: 80268847--80268925 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
80268837 ATAAGTTTGC
80268847 AAGAATAGTGCATATGGAGAACTCTAA
1 AAGAATAGTGCATATGGAGAACTCTAA
** * *
80268874 AAGAATACAGCATATGGAGAACACTGA
1 AAGAATAGTGCATATGGAGAACTCTAA
* * * *
80268901 AAGAGTAGTACATTTGGCGAACTCT
1 AAGAATAGTGCATATGGAGAACTCT
80268926 GAAGGAATGA
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (27 bp):
AAGAATAGTGCATATGGAGAACTCTAA
Found at i:80271170 original size:22 final size:22
Alignment explanation
Indices: 80271144--80271193 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
80271134 TCTTTTCCCC
80271144 TCCCCAAAATCCCCAAC-TTTTT
1 TCCCCAAAATCCCC-ACTTTTTT
*
80271166 TCCCC-AAATCCCCTCTTTTTT
1 TCCCCAAAATCCCCACTTTTTT
80271187 TCCCCAA
1 TCCCCAA
80271194 TGTCTGATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 18 0.72
22 6 0.24
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.34
Consensus pattern (22 bp):
TCCCCAAAATCCCCACTTTTTT
Found at i:80271229 original size:25 final size:25
Alignment explanation
Indices: 80271201--80271261 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
80271191 CAATGTCTGA
80271201 TGCATCGCCGTCGACAATCCTCTA-C
1 TGCATCGCCGTCGACAATCCTC-AGC
* *
80271226 TGCATTGCCGTCGACAGTCCTCAGC
1 TGCATCGCCGTCGACAATCCTCAGC
*
80271251 TGTATCGCCGT
1 TGCATCGCCGT
80271262 GTAAGTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 30 0.97
ACGTcount: A:0.16, C:0.36, G:0.21, T:0.26
Consensus pattern (25 bp):
TGCATCGCCGTCGACAATCCTCAGC
Found at i:80271806 original size:2 final size:2
Alignment explanation
Indices: 80271799--80271846 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
80271789 ATACAAAACC
80271799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80271841 AT AT AT
1 AT AT AT
80271847 TCAATATACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80276079 original size:42 final size:42
Alignment explanation
Indices: 80276033--80276121 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
80276023 ATCCTAATTG
* *
80276033 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCATTATTCTAATAAACTACTAAAAGATAAAA
80276075 GAAAATAGTTCCATTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCATTATTCTAATAAACTACTAAAAGATAAAA
*
80276117 TAAAA
1 GAAAA
80276122 AAATTCCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCATTATTCTAATAAACTACTAAAAGATAAAA
Found at i:80276168 original size:19 final size:18
Alignment explanation
Indices: 80276146--80276185 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
80276136 TGAATAAAAC
80276146 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
80276165 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
80276183 TTA
1 TTA
80276186 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:80280082 original size:19 final size:18
Alignment explanation
Indices: 80280060--80280099 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
80280050 TGAATAAAAC
80280060 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
80280079 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
80280097 TTA
1 TTA
80280100 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:80285469 original size:36 final size:36
Alignment explanation
Indices: 80285429--80285502 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
80285419 AAGAAATGAG
80285429 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
1 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
80285465 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
1 AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
80285501 AG
1 AG
80285503 TTTGTAGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (36 bp):
AGGTATTACGTACTTCCAAATTCTTATAATTATTTT
Found at i:80289844 original size:18 final size:19
Alignment explanation
Indices: 80289823--80289861 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
80289813 GTTTTTGTTT
80289823 TTTTACTA-C-TTTTCATTA
1 TTTTACTATCATTTT-ATTA
80289841 TTTTACTATCATTTTATTA
1 TTTTACTATCATTTTATTA
80289860 TT
1 TT
80289862 ATGTTATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 7 0.37
20 4 0.21
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTACTATCATTTTATTA
Found at i:80299916 original size:2 final size:2
Alignment explanation
Indices: 80299909--80299935 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80299899 TTTCTTTGTC
80299909 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
80299936 TAAATCAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80302447 original size:40 final size:40
Alignment explanation
Indices: 80302379--80302454 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
80302369 CAGTACTTTA
*
80302379 TGGTGTGTAGGGTTGGATGGGTCAATTTTATCCCCATATT
1 TGGTGTGTAGGGTGGGATGGGTCAATTTTATCCCCATATT
**
80302419 TGGTGTGTAGGGATGGGA-GGGTTGATTTTATCCCCA
1 TGGTGTGTAGGG-TGGGATGGGTCAATTTTATCCCCA
80302455 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.17, C:0.12, G:0.34, T:0.37
Consensus pattern (40 bp):
TGGTGTGTAGGGTGGGATGGGTCAATTTTATCCCCATATT
Found at i:80302538 original size:2 final size:2
Alignment explanation
Indices: 80302531--80302562 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80302521 GTTATGCATG
80302531 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80302563 CTGAGATGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80304452 original size:5 final size:5
Alignment explanation
Indices: 80304442--80304473 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
80304432 AATGTTGTGA
80304442 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80304474 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:80304467 original size:9 final size:9
Alignment explanation
Indices: 80304443--80304473 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
80304433 ATGTTGTGAA
80304443 AAATAAAAT
1 AAATAAAAT
80304452 AAAATAAAAT
1 -AAATAAAAT
80304462 AAATAAAAT
1 AAATAAAAT
80304471 AAA
1 AAA
80304474 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:80308887 original size:5 final size:5
Alignment explanation
Indices: 80308877--80308908 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
80308867 CAATTTGTGA
80308877 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80308909 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:80308897 original size:14 final size:14
Alignment explanation
Indices: 80308878--80308908 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
80308868 AATTTGTGAA
80308878 AAATAAAATAAAAT
1 AAATAAAATAAAAT
80308892 AAATAAAATAAAAT
1 AAATAAAATAAAAT
80308906 AAA
1 AAA
80308909 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:80310485 original size:60 final size:60
Alignment explanation
Indices: 80310417--80310531 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
80310407 ATATTTTTTT
* * *
80310417 AATTTTTAGAATTAGAATTAAATTGA-AAATTATTGTAAATATTCAAGGCTAAATTTGTTA
1 AATTTTTAGAATTAGAACTAAAATGACAAATT-TTGTAAACATTCAAGGCTAAATTTGTTA
* * *
80310477 AATTTTTAGAATTTGAACTAAAATGACAAATTTTGTAAACATTGAGGGCTAAATT
1 AATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTCAAGGCTAAATT
80310532 CGTCGATTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 43 0.90
61 5 0.10
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.39
Consensus pattern (60 bp):
AATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTCAAGGCTAAATTTGTTA
Found at i:80310923 original size:28 final size:30
Alignment explanation
Indices: 80310861--80310923 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 30
80310851 TTTATAATTT
* *
80310861 TTAATAAAATTATATATTTTTTCAAAATAA
1 TTAATAAAATTAGATATTTTATCAAAATAA
*
80310891 -T-ATAAAATT-GATATTTTATGAAAA-AA
1 TTAATAAAATTAGATATTTTATCAAAATAA
80310917 TTAATAA
1 TTAATAA
80310924 TATATAAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 2 0.07
27 13 0.46
28 12 0.43
29 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (30 bp):
TTAATAAAATTAGATATTTTATCAAAATAA
Found at i:80311024 original size:20 final size:20
Alignment explanation
Indices: 80310992--80311049 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
80310982 ATATTCAGAG
80310992 AAATAATATTTATATTTTCTTT
1 AAATAA-ATTTATATTTT-TTT
*
80311014 -TATAAATTTATATTTTTTT
1 AAATAAATTTATATTTTTTT
*
80311033 AAATAATTTTATATTTT
1 AAATAAATTTATATTTT
80311050 ATATATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 3 0.09
20 25 0.78
21 4 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
AAATAAATTTATATTTTTTT
Found at i:80315571 original size:24 final size:24
Alignment explanation
Indices: 80315539--80315592 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
80315529 ATTAGAGTAC
80315539 TATTATATATTTAGTATAAGTTTAT
1 TATT-TATATTTAGTATAAGTTTAT
80315564 TATTTATATTTAGTATAAGTTTAT
1 TATTTATATTTAGTATAAGTTTAT
80315588 TATTT
1 TATTT
80315593 TAATGTGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.59
Consensus pattern (24 bp):
TATTTATATTTAGTATAAGTTTAT
Found at i:80317144 original size:22 final size:21
Alignment explanation
Indices: 80317111--80317151 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
80317101 CATTGGACTC
80317111 TTTTTTCTTCTTCTTGTTTCCT
1 TTTTTTCTTCTTCTT-TTTCCT
80317133 TTTTTTGC-TCTTCTTTTTC
1 TTTTTT-CTTCTTCTTTTTC
80317152 AAGATCTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 13 0.72
23 1 0.06
ACGTcount: A:0.00, C:0.22, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTTTCTTCTTCTTTTTCCT
Found at i:80321502 original size:50 final size:51
Alignment explanation
Indices: 80321424--80321526 Score: 181
Period size: 50 Copynumber: 2.0 Consensus size: 51
80321414 AGGGTATCCT
*
80321424 AAGATCACTAAGATACTTAATGCTTATAAATACAACCCTTATTCCATG-AA
1 AAGATCACTAAGATACTTAATGCCTATAAATACAACCCTTATTCCATGCAA
*
80321474 AAGATCACTAAGATACTTAGTGCCTATAAATACAACCCTTATTCCATGCAA
1 AAGATCACTAAGATACTTAATGCCTATAAATACAACCCTTATTCCATGCAA
80321525 AA
1 AA
80321527 AAATTCTTTC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 46 0.92
51 4 0.08
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (51 bp):
AAGATCACTAAGATACTTAATGCCTATAAATACAACCCTTATTCCATGCAA
Found at i:80321973 original size:13 final size:13
Alignment explanation
Indices: 80321940--80321987 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
80321930 GTTCTAATAC
*
80321940 TATGTTTTCAAGA
1 TATGTTTTAAAGA
* * *
80321953 TATATTTTTAAGC
1 TATGTTTTAAAGA
80321966 TATGTTTTAAAGA
1 TATGTTTTAAAGA
80321979 TATGTTTTA
1 TATGTTTTA
80321988 CACATACTCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.52
Consensus pattern (13 bp):
TATGTTTTAAAGA
Found at i:80323050 original size:16 final size:16
Alignment explanation
Indices: 80323029--80323063 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
80323019 TAACATCATA
80323029 TGCAAGCCT-ATTTTAT
1 TGCAAG-CTAATTTTAT
80323045 TGCAAGCTAATTTTAT
1 TGCAAGCTAATTTTAT
80323061 TGC
1 TGC
80323064 GAAGTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 2 0.11
16 16 0.89
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (16 bp):
TGCAAGCTAATTTTAT
Found at i:80323589 original size:17 final size:17
Alignment explanation
Indices: 80323560--80323614 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
80323550 TCCTGATTGG
* *
80323560 TTTATTGATTTTTATCA
1 TTTATTTATTTTTATTA
* *
80323577 TTTGTTTATTTTTCTTA
1 TTTATTTATTTTTATTA
*
80323594 TTTATTTGTTTTTATTA
1 TTTATTTATTTTTATTA
80323611 TTTA
1 TTTA
80323615 AAATTTCTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.18, C:0.04, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTATTTATTTTTATTA
Found at i:80325712 original size:56 final size:55
Alignment explanation
Indices: 80325647--80325753 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 55
80325637 CTATAGATTG
* * *
80325647 CAAATTAATTATTCATGAGCACTATTCAAGTTAAAAGTGATGATTTATCATATTA
1 CAAATTAATTATTCATAAGCAATATTCAAATTAAAAGTGATGATTTATCATATTA
*
80325702 CAAATTTAATTATTCATAAGGAATATTCAAATTAAAAGTGATGATTTATCAT
1 CAAA-TTAATTATTCATAAGCAATATTCAAATTAAAAGTGATGATTTATCAT
80325754 CCAAGGAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
55 4 0.09
56 43 0.91
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.38
Consensus pattern (55 bp):
CAAATTAATTATTCATAAGCAATATTCAAATTAAAAGTGATGATTTATCATATTA
Found at i:80327931 original size:56 final size:55
Alignment explanation
Indices: 80327866--80327973 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 55
80327856 TTATAGATTG
80327866 CAAATTAATTATTCATAAGAACTATTCAAATTAAAAGTGATGATTTATCATCTTA
1 CAAATTAATTATTCATAAGAACTATTCAAATTAAAAGTGATGATTTATCATCTTA
* *
80327921 CAAATTTAATTATTCATAAGCATTATTCAAATTAAAAGTGATGATTTATCATC
1 CAAA-TTAATTATTCATAAGAACTATTCAAATTAAAAGTGATGATTTATCATC
80327974 CAATGGATAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
55 4 0.08
56 46 0.92
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (55 bp):
CAAATTAATTATTCATAAGAACTATTCAAATTAAAAGTGATGATTTATCATCTTA
Found at i:80329257 original size:20 final size:20
Alignment explanation
Indices: 80329232--80329271 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
80329222 TCCTATTTAA
*
80329232 TATTAAATT-TTAAATATTTT
1 TATT-AATTATTAAAAATTTT
80329252 TATTAATTATTAAAAATTTT
1 TATTAATTATTAAAAATTTT
80329272 ATCACACACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTAATTATTAAAAATTTT
Found at i:80337204 original size:21 final size:21
Alignment explanation
Indices: 80337156--80337242 Score: 83
Period size: 22 Copynumber: 4.2 Consensus size: 21
80337146 AATAATTAAT
* *
80337156 TAATTTTTAAAAATTTAAAAA
1 TAATTTTTATAAATTTTAAAA
*
80337177 TATATTTTTATAAGTTTTAAAA
1 TA-ATTTTTATAAATTTTAAAA
80337199 TAATTTTTATAATATTTT-AAA
1 TAATTTTTATAA-ATTTTAAAA
*
80337220 T--TTTTT-TAAAATTTAAAA
1 TAATTTTTATAAATTTTAAAA
*
80337238 AAATT
1 TAATT
80337243 AATTAATTGT
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
17 4 0.07
18 6 0.11
19 5 0.09
20 2 0.04
21 16 0.29
22 22 0.40
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (21 bp):
TAATTTTTATAAATTTTAAAA
Found at i:80343406 original size:19 final size:19
Alignment explanation
Indices: 80343374--80343412 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
80343364 CTAAAAATCG
*
80343374 ATAAATAATATTTTGGAAA
1 ATAAATAATATTTTAGAAA
80343393 ATAAA-AATATTTTTAGAAA
1 ATAAATAATA-TTTTAGAAA
80343412 A
1 A
80343413 ATTAATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (19 bp):
ATAAATAATATTTTAGAAA
Found at i:80343842 original size:11 final size:13
Alignment explanation
Indices: 80343813--80343837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80343803 TTTAAACCTT
80343813 TTCTCTCTAAAAA
1 TTCTCTCTAAAAA
80343826 TTCTCTCTAAAA
1 TTCTCTCTAAAA
80343838 TCTCTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (13 bp):
TTCTCTCTAAAAA
Found at i:80350182 original size:22 final size:22
Alignment explanation
Indices: 80350154--80350197 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
80350144 TTCATAACAA
80350154 GCATCTTATATCAAAATCAACC
1 GCATCTTATATCAAAATCAACC
*
80350176 GCATCTTATATCACAATCAACC
1 GCATCTTATATCAAAATCAACC
80350198 ACACCTCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.30, G:0.05, T:0.27
Consensus pattern (22 bp):
GCATCTTATATCAAAATCAACC
Found at i:80354697 original size:45 final size:45
Alignment explanation
Indices: 80354633--80354800 Score: 248
Period size: 45 Copynumber: 3.7 Consensus size: 45
80354623 AGAAAATGAG
*
80354633 TAAGACCATAGTTGAAAGACGCTATGGCATCATGATGGAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGATGGAAATAAA
* * *
80354678 TAAGACCATAGTTGAAAGACACTATGGCAACATGATGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGATGGAAATAAA
* *
80354723 TAAGACCATAGTTGAAAGACACTATGGAATCATGTTAGG-AATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCATGAT-GGAAATAAA
* *
80354768 TAAGATCATAGTTGAAAGAAACTATGGCATCAT
1 TAAGACCATAGTTGAAAGACACTATGGCATCAT
80354801 ATCAGAAGTG
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
45 109 0.99
46 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCATCATGATGGAAATAAA
Found at i:80354817 original size:45 final size:45
Alignment explanation
Indices: 80354626--80354819 Score: 239
Period size: 45 Copynumber: 4.3 Consensus size: 45
80354616 TTGGCTTAGA
* * *
80354626 AAATGAGTAAGACCATAGTTGAAAGACGCTATGGCATCATGATGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATGATAG
* *
80354671 AAATAAATAAGACCATAGTTGAAAGACACTATGGCAACATGAT-G
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATGATAG
* *
80354715 AAAATGAATAAGACCATAGTTGAAAGACACTATGGAATCATGTTAG
1 -AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATGATAG
* * * *
80354761 GAATAAATAAGATCATAGTTGAAAGAAACTATGGCATCAT-ATCAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATGAT-AG
* *
80354806 AAGTGAGTAAGACC
1 AAATGAATAAGACC
80354820 GTTGCCAAAA
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
44 2 0.02
45 124 0.98
46 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.22
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATGATAG
Found at i:80354817 original size:90 final size:90
Alignment explanation
Indices: 80354625--80354819 Score: 277
Period size: 90 Copynumber: 2.2 Consensus size: 90
80354615 ATTGGCTTAG
* *
80354625 AAAATGAGTAAGACCATAGTTGAAAGACGCTATGGCATCATGATGGAAATAAATAAGACCATAGT
1 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGAATCATGATGGAAATAAATAAGACCATAGT
* *
80354690 TGAAAGACACTATGGCAACATGATG
66 TGAAAGAAACTATGGCAACATGATC
* * *
80354715 AAAATGAATAAGACCATAGTTGAAAGACACTATGGAATCATGTTAGG-AATAAATAAGATCATAG
1 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGAATCATGAT-GGAAATAAATAAGACCATAG
*
80354779 TTGAAAGAAACTATGGCATCAT-ATC
65 TTGAAAGAAACTATGGCAACATGATC
*
80354804 AGAAGTGAGTAAGACC
1 A-AAATGAGTAAGACC
80354820 GTTGCCAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
89 3 0.03
90 88 0.95
91 2 0.02
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.22
Consensus pattern (90 bp):
AAAATGAGTAAGACCATAGTTGAAAGACACTATGGAATCATGATGGAAATAAATAAGACCATAGT
TGAAAGAAACTATGGCAACATGATC
Found at i:80364955 original size:19 final size:20
Alignment explanation
Indices: 80364922--80364966 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
80364912 TGATTCAACG
80364922 GACAT-AAAACTCTTGACAT
1 GACATGAAAACTCTTGACAT
*
80364941 GACATGAAAAC-CTTGAGAT
1 GACATGAAAACTCTTGACAT
*
80364960 GAAATGA
1 GACATGA
80364967 TAATGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (20 bp):
GACATGAAAACTCTTGACAT
Found at i:80368889 original size:39 final size:39
Alignment explanation
Indices: 80368805--80368986 Score: 208
Period size: 39 Copynumber: 4.6 Consensus size: 39
80368795 GCTACTCGTT
* *
80368805 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
* *
80368845 TAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
* *
80368884 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAAATCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* * * *
80368923 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
80368964 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
80368987 GATATCATTC
Statistics
Matches: 121, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 9 0.07
39 53 0.44
40 46 0.38
41 13 0.11
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:80368988 original size:40 final size:40
Alignment explanation
Indices: 80368786--80368991 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
80368776 CGGAATTTAA
** *
80368786 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80368826 CCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80368866 CC-GATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80368904 CCGGA-ATTAGTAAATCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
80368944 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80368984 CCGGATAT
1 CCGGATAT
80368992 CATTCGAATA
Statistics
Matches: 141, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
38 9 0.06
39 52 0.37
40 68 0.48
41 12 0.09
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80369705 original size:2 final size:2
Alignment explanation
Indices: 80369698--80369729 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80369688 ATCATGTGCA
80369698 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80369730 GCAAGAGCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80370884 original size:27 final size:27
Alignment explanation
Indices: 80370846--80370904 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
80370836 CAGAGATCAT
*
80370846 CCAGAAAGAATTGAAAAGAAGCTAGAA
1 CCAGTAAGAATTGAAAAGAAGCTAGAA
80370873 CCAGTAAGAATTGAAAAGAAGCTAGAA
1 CCAGTAAGAATTGAAAAGAAGCTAGAA
80370900 CCAGT
1 CCAGT
80370905 TTCAAAGCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.51, C:0.14, G:0.22, T:0.14
Consensus pattern (27 bp):
CCAGTAAGAATTGAAAAGAAGCTAGAA
Found at i:80374115 original size:6 final size:6
Alignment explanation
Indices: 80374104--80374146 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
80374094 GTACTTAATT
* * *
80374104 AATAAA AATAAA GATAAA AGTGAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A
80374147 GTTTTTAAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:80375226 original size:40 final size:40
Alignment explanation
Indices: 80375154--80375343 Score: 217
Period size: 40 Copynumber: 4.7 Consensus size: 40
80375144 TTCTAGCGCA
* * *
80375154 AGCCTACGGGTCTTTAA-CCCGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
*
80375193 AGCCTGCGGGTCTTTATGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
80375233 AGCCTGCGGGTCTTTAAG-CCGGATACACTTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
80375272 AGCCTACGCTGCGGGTCTTTAAGCCTGGATACACTTCCAGCATAT
1 AG----C-CTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
80375317 GGCCTGCGGGTCTTTATA-CCCGGATAC
1 AGCCTGCGGGTCTTTA-AGCCCGGATAC
80375344 CACATCAAAT
Statistics
Matches: 133, Mismatches: 9, Indels: 17
0.84 0.06 0.11
Matches are distributed among these distances:
39 38 0.29
40 56 0.42
41 2 0.02
43 1 0.01
44 15 0.11
45 21 0.16
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:80375969 original size:2 final size:2
Alignment explanation
Indices: 80375958--80375995 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
80375948 CGAATTTAAC
*
80375958 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80375996 CCGAATGTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:80383071 original size:40 final size:40
Alignment explanation
Indices: 80382891--80383074 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
80382881 CGCAAGCCTA
* * *
80382891 CGGGTCTTTAA-CTCGGATAC-CATTCCAGCACGA-AGCCTG
1 CGGGTCTTTAAGCCCGGATACAC-TTCCAGCA-TATAGGCTG
* * * *
80382930 CGGGTCTTTATGCTCGGATACAATTCCAGCATATAGCCTG
1 CGGGTCTTTAAGCCCGGATACACTTCCAGCATATAGGCTG
*
80382970 CGGGTCTTTAAGCCCAGATACACTTCCAGCATATA-GCATACG
1 CGGGTCTTTAAGCCCGGATACACTTCCAGCATATAGGC-T--G
*
80383012 CTGTGGTCTTTAAGCCCGGATACACTTCCATCATATAGGCTG
1 C-G-GGTCTTTAAGCCCGGATACACTTCCAGCATATAGGCTG
80383054 CGGGTCTTTATA-CCCGGATAC
1 CGGGTCTTTA-AGCCCGGATAC
80383075 CACATCAAAT
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
39 12 0.10
40 72 0.58
41 2 0.02
42 4 0.03
43 1 0.01
44 32 0.26
45 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
CGGGTCTTTAAGCCCGGATACACTTCCAGCATATAGGCTG
Found at i:80385956 original size:27 final size:27
Alignment explanation
Indices: 80385915--80385968 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
80385905 TGTCATGTGA
* *
80385915 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
80385942 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
80385969 GGTTGTTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:80386294 original size:49 final size:49
Alignment explanation
Indices: 80386222--80386396 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 49
80386212 TGAGGTCACG
* *
80386222 TGTGTTGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
* * * * *
80386271 TGTGTAGTACTAAGTGCAAGCTACTATGTGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-TT-GGTCGCA
*
80386322 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
*
80386371 TGTGTAGTACTAAGTGCAAGATACTA
1 TGTGTAGTACTAAGTGCAAGCTACTA
80386397 TGCATACTAG
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 64 0.59
50 4 0.04
51 41 0.38
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:80386390 original size:100 final size:100
Alignment explanation
Indices: 80386217--80386398 Score: 337
Period size: 100 Copynumber: 1.8 Consensus size: 100
80386207 TATTGTGAGG
* *
80386217 TCACGTGTGTTGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
80386282 AAGTGCAAGCTACTATGTGTACCCGATAACTTCGA
66 AAGTGCAAGATACTATGTGTACCCGATAACTTCGA
80386317 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
80386382 AAGTGCAAGATACTATG
66 AAGTGCAAGATACTATG
80386399 CATACTAGAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAAGATACTATGTGTACCCGATAACTTCGA
Found at i:80399861 original size:19 final size:19
Alignment explanation
Indices: 80399824--80399861 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
80399814 ACTTGTCAGA
*
80399824 AGAAAATAAATGAATAATT
1 AGAAAATAAATGAAAAATT
80399843 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
80399862 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:80402856 original size:49 final size:49
Alignment explanation
Indices: 80402735--80402953 Score: 345
Period size: 49 Copynumber: 4.5 Consensus size: 49
80402725 TACATATATG
* * * *
80402735 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
80402782 TGTGATAAGGCCGT-ATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCC-TAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
80402831 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
80402880 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
80402929 TGTGATAAGGCCTAATGGCTAATGT
1 TGTGATAAGGCCTAATGGCCAATGT
80402954 AAAATATATG
Statistics
Matches: 160, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 39 0.24
48 1 0.01
49 120 0.75
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:80403103 original size:37 final size:37
Alignment explanation
Indices: 80403062--80403170 Score: 209
Period size: 37 Copynumber: 2.9 Consensus size: 37
80403052 GGTGAGATCT
80403062 GATGACTACGTGTGGAGATTATGACCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGACCGGGTAAGACCC
80403099 GATGACTACGTGTGGAGATTATGACCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGACCGGGTAAGACCC
*
80403136 GATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
1 GATGACTACGTGTGGAGATTATGACCGGGTAAGAC
80403171 TTCGTAATAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (37 bp):
GATGACTACGTGTGGAGATTATGACCGGGTAAGACCC
Found at i:80406581 original size:39 final size:38
Alignment explanation
Indices: 80406500--80406773 Score: 287
Period size: 39 Copynumber: 7.0 Consensus size: 38
80406490 CAAATCCAAT
* *
80406500 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGAC-TT-AGCCCGGATATAA
*
80406540 TACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGAC-TTAGCCCGGATATAA
* *
80406579 TACCAGTACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGAC-TTAGCCCGGATATAA
* * * *
80406618 CACCAGCACGAATGCCTTCGGGGCTTAACCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTAGCCCGGATATAA
* * *
80406657 CACCAGCACGAATGCCTTCGGGACTTAGCCCGAATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTAGCCCGGATATAA
* * *
80406696 CACCAGCACAGATGTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACA-AAGCCTGCGGGACTTAGCCCGGATATAA
* * * * * *
80406735 CACCAGCGCGAATGCCTTCAGGACTTAGCTCGGGTATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTAGCCCGGATATAA
80406774 TTCTCCATTA
Statistics
Matches: 211, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.00
39 175 0.83
40 35 0.17
ACGTcount: A:0.30, C:0.29, G:0.23, T:0.19
Consensus pattern (38 bp):
CACCAGCACAAAGCCTGCGGGACTTAGCCCGGATATAA
Found at i:80406724 original size:117 final size:118
Alignment explanation
Indices: 80406524--80406753 Score: 331
Period size: 117 Copynumber: 2.0 Consensus size: 118
80406514 ATGCGGGACT
* * * *
80406524 TTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAATACCAGTACA
1 TTAAGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGAATATAACACCAGCACA
80406589 AAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGGC
66 AAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGGC
* *
80406642 TTAA-CCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGAATATAACACCAGCAC
1 TTAAGCCCGGATATAACACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGAATATAACACCAGCAC
* * * *
80406705 AGATGTCTTCGGGAC-TTAGCCCGGATATAACACCAGCGCGAATGCCTTC
65 A-AAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTC
80406754 AGGACTTAGC
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
117 74 0.74
118 26 0.26
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (118 bp):
TTAAGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGAATATAACACCAGCACA
AAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGGC
Found at i:80406747 original size:78 final size:79
Alignment explanation
Indices: 80406517--80406773 Score: 317
Period size: 78 Copynumber: 3.3 Consensus size: 79
80406507 ACAAAGCATG
* * * *
80406517 CGGGACTTTAAGCCCGGATATAATACCAGCACA-AAGCCTGCGGGACTTTAGCCCGGATATAATA
1 CGGGACTTT-AGCCCGGATATAACACCAGCACAGATGCCTTCGGGAC-TTAGCCCGGATATAACA
* * *
80406581 CCAGTAC-AAAGCCTG
64 CCAGCACGAATGCCTT
* *
80406596 CGGGACTTTAGCCCGGATATAACACCAGCAC-GAATGCCTTCGGGGCTTAACCCGGATATAACAC
1 CGGGACTTTAGCCCGGATATAACACCAGCACAG-ATGCCTTCGGGACTTAGCCCGGATATAACAC
80406660 CAGCACGAATGCCTT
65 CAGCACGAATGCCTT
* *
80406675 CGGGAC-TTAGCCCGAATATAACACCAGCACAGATGTCTTCGGGACTTAGCCCGGATATAACACC
1 CGGGACTTTAGCCCGGATATAACACCAGCACAGATGCCTTCGGGACTTAGCCCGGATATAACACC
*
80406739 AGCGCGAATGCCTT
66 AGCACGAATGCCTT
* * *
80406753 CAGGAC-TTAGCTCGGGTATAA
1 CGGGACTTTAGCCCGGATATAA
80406774 TTCTCCATTA
Statistics
Matches: 156, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
78 124 0.79
79 32 0.21
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.19
Consensus pattern (79 bp):
CGGGACTTTAGCCCGGATATAACACCAGCACAGATGCCTTCGGGACTTAGCCCGGATATAACACC
AGCACGAATGCCTT
Found at i:80409157 original size:40 final size:40
Alignment explanation
Indices: 80409062--80409308 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
80409052 TGAATGATAC
* * *
80409062 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
80409102 -CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
80409141 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
80409181 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
80409221 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
80409261 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
80409301 CC-GGCTAA
1 CCGGGCTAA
80409309 ATTCGAAGAA
Statistics
Matches: 190, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 38 0.20
40 152 0.80
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:80417281 original size:40 final size:40
Alignment explanation
Indices: 80417226--80417467 Score: 369
Period size: 40 Copynumber: 6.0 Consensus size: 40
80417216 TGAATGATAC
* * *
80417226 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
80417266 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
80417306 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
80417346 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
80417386 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
80417426 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
80417466 CC
1 CC
80417468 AGCTAAATTC
Statistics
Matches: 187, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 185 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:80433073 original size:20 final size:20
Alignment explanation
Indices: 80433048--80433092 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
80433038 AGTGACTAAA
* *
80433048 ATGAAAACTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
80433068 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
80433088 ATGAA
1 ATGAA
80433093 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:80435378 original size:15 final size:15
Alignment explanation
Indices: 80435360--80435400 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
80435350 TCTAGTAGTT
*
80435360 TTATTATTGTTAGAA
1 TTATTATTATTAGAA
*
80435375 TTATTATTATTAGAT
1 TTATTATTATTAGAA
80435390 TTAGTTATTAT
1 TTA-TTATTAT
80435401 ATATTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.59
Consensus pattern (15 bp):
TTATTATTATTAGAA
Found at i:80438154 original size:20 final size:21
Alignment explanation
Indices: 80438115--80438154 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80438105 GAATTAATGG
*
80438115 CTACATGGGCGTGTTGCCCTT
1 CTACACGGGCGTGTTGCCCTT
80438136 CTACACGGGCGTG-TGCCCT
1 CTACACGGGCGTGTTGCCCT
80438155 GTTCCAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.33, G:0.30, T:0.28
Consensus pattern (21 bp):
CTACACGGGCGTGTTGCCCTT
Found at i:80439805 original size:3 final size:3
Alignment explanation
Indices: 80439797--80439858 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
80439787 AAGTAAATTT
80439797 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
80439845 GAA GAA AAA GAA GA
1 GAA GAA GAA GAA GA
80439859 CATTAGTACT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:80445076 original size:51 final size:49
Alignment explanation
Indices: 80445016--80445113 Score: 133
Period size: 51 Copynumber: 2.0 Consensus size: 49
80445006 AATAAAAGAG
*
80445016 TTATTAATTAAAAAGATGAATTAAAAATAAAAAAAATTGAAAACAATATAT
1 TTATTAATTAAAAACATGAATTAAAAAT-AAAAAAATTGAAAA-AATATAT
* * * *
80445067 TTATTAATTATAAACATTAATTAAATATAAAAAAATTTAAAAAATAT
1 TTATTAATTAAAAACATGAATTAAAAATAAAAAAATTGAAAAAATAT
80445114 GAAATAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 5 0.12
50 13 0.31
51 24 0.57
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (49 bp):
TTATTAATTAAAAACATGAATTAAAAATAAAAAAATTGAAAAAATATAT
Found at i:80447951 original size:16 final size:16
Alignment explanation
Indices: 80447918--80447965 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
80447908 TTTAATATTT
*
80447918 TAATTTTATTATAATAA
1 TAATTTTA-AATAATAA
80447935 TAAATTTTAAA-AATAA
1 T-AATTTTAAATAATAA
80447951 TAATTTTAAATAATA
1 TAATTTTAAATAATA
80447966 TTATTCACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 9 0.32
16 10 0.36
17 2 0.07
18 7 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAATTTTAAATAATAA
Found at i:80448465 original size:32 final size:34
Alignment explanation
Indices: 80448427--80448498 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 34
80448417 AACTTTTATG
*
80448427 AAATATTTTTA-AGAAATTT-ACCAAACAACAGA
1 AAATATTTTTACACAAATTTCACCAAACAACAGA
* *
80448459 AAATA-TTTTACACAGATTTCTCCAAACAACAGA
1 AAATATTTTTACACAAATTTCACCAAACAACAGA
80448492 AAATATT
1 AAATATT
80448499 AACTTTTCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 5 0.15
32 11 0.32
33 17 0.50
34 1 0.03
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (34 bp):
AAATATTTTTACACAAATTTCACCAAACAACAGA
Found at i:80451023 original size:35 final size:31
Alignment explanation
Indices: 80450959--80451020 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
80450949 GATCACAATG
*
80450959 CCAATGTATTTATTTATACACACAATCATTC
1 CCAATGTATCTATTTATACACACAATCATTC
80450990 CCAATGTATCTATTTATACACACAATCATTC
1 CCAATGTATCTATTTATACACACAATCATTC
80451021 ATTATTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.37
Consensus pattern (31 bp):
CCAATGTATCTATTTATACACACAATCATTC
Found at i:80453661 original size:20 final size:18
Alignment explanation
Indices: 80453611--80453662 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
80453601 CTGCAAGATA
80453611 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
80453628 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
80453648 AATATTAAATTAATA
1 AATATTAAATTAATA
80453663 AAATACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:80453757 original size:14 final size:14
Alignment explanation
Indices: 80453740--80453767 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80453730 TCAACCACTG
80453740 ATGACCAACCGCTA
1 ATGACCAACCGCTA
80453754 ATGACCAACCGCTA
1 ATGACCAACCGCTA
80453768 CCAGCCATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (14 bp):
ATGACCAACCGCTA
Found at i:80462266 original size:46 final size:46
Alignment explanation
Indices: 80462206--80462425 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
80462196 TTTGACATGA
* * * * * *
80462206 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
80462252 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80462298 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80462344 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80462382 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
80462426 AGAGCACACT
Statistics
Matches: 154, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
38 34 0.22
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 4 0.03
46 108 0.70
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:80462389 original size:38 final size:38
Alignment explanation
Indices: 80462338--80462413 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
80462328 ACATTTCATA
80462338 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
80462376 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
80462414 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:80464522 original size:11 final size:11
Alignment explanation
Indices: 80464506--80464557 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
80464496 TATACTAAAT
80464506 AAATAATAATA
1 AAATAATAATA
*
80464517 AAATAAT-ATT
1 AAATAATAATA
* *
80464527 AAATATCTCATA
1 AAATA-ATAATA
*
80464539 AAATATTAATA
1 AAATAATAATA
80464550 AAATAATA
1 AAATAATA
80464558 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:80467463 original size:46 final size:46
Alignment explanation
Indices: 80467403--80467622 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
80467393 TTTGACATGA
* * * * * *
80467403 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
80467449 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80467495 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80467541 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80467579 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
80467623 AGAGCACACT
Statistics
Matches: 154, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
38 34 0.22
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 4 0.03
46 108 0.70
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:80467586 original size:38 final size:38
Alignment explanation
Indices: 80467535--80467610 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
80467525 ACATTTCATA
80467535 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
80467573 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
80467611 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:80469775 original size:11 final size:11
Alignment explanation
Indices: 80469759--80469810 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
80469749 TATACTAAAT
80469759 AAATAATAATA
1 AAATAATAATA
*
80469770 AAATAAT-ATT
1 AAATAATAATA
* *
80469780 AAATATCTCATA
1 AAATA-ATAATA
*
80469792 AAATATTAATA
1 AAATAATAATA
80469803 AAATAATA
1 AAATAATA
80469811 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:80472637 original size:29 final size:28
Alignment explanation
Indices: 80472605--80472736 Score: 113
Period size: 29 Copynumber: 4.6 Consensus size: 28
80472595 GGGACGAGAT
* *
80472605 TGGCACTGAGTGTGCGAGATTGTAATGTA
1 TGGCACTAAGTGTGCGAGATTG-AATATA
* *
80472634 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGATT-GAATATA
* * * *
80472663 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGATTGAAT-ATA
* *
80472692 TGGCACTAAGTGTGCGTGATTGAGTAT-
1 TGGCACTAAGTGTGCGAGATTGAATATA
* *
80472719 TAAGCACTATGTGTGCGA
1 T-GGCACTAAGTGTGCGA
80472737 ACTCTACACA
Statistics
Matches: 83, Mismatches: 17, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
27 1 0.01
28 17 0.20
29 64 0.77
30 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGATTGAATATA
Found at i:80480684 original size:29 final size:28
Alignment explanation
Indices: 80480652--80480754 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
80480642 GGGACGAGAT
* *
80480652 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
80480681 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
80480710 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
80480739 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
80480755 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:80482103 original size:52 final size:53
Alignment explanation
Indices: 80482040--80482150 Score: 201
Period size: 52 Copynumber: 2.2 Consensus size: 53
80482030 TGGACATATG
80482040 AGTCTA-GTTTCAGGGAAAAATTACGAAACTGATTTTTGAGTTG-AAAACTCA
1 AGTCTATGTTTCAGGGAAAAATTACGAAACTGATTTTTGAGTTGTAAAACTCA
80482091 AGTCTATGTTTCAGGGAAAAATTACGAAACTGATTTTTGAGTTGTAAAACTCA
1 AGTCTATGTTTCAGGGAAAAATTACGAAACTGATTTTTGAGTTGTAAAACTCA
80482144 AGT-TATG
1 AGTCTATG
80482151 ATTTTTGAAG
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
51 6 0.10
52 41 0.71
53 11 0.19
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (53 bp):
AGTCTATGTTTCAGGGAAAAATTACGAAACTGATTTTTGAGTTGTAAAACTCA
Found at i:80492684 original size:22 final size:22
Alignment explanation
Indices: 80492645--80492686 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80492635 CAAAATTAAT
**
80492645 TCCAAAATAAAATCAATAATAC
1 TCCAAAATAAAAAAAATAATAC
*
80492667 TCCAAATTAAAAAAAATAAT
1 TCCAAAATAAAAAAAATAAT
80492687 TTCAATGGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (22 bp):
TCCAAAATAAAAAAAATAATAC
Found at i:80493036 original size:28 final size:31
Alignment explanation
Indices: 80493005--80493071 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 31
80492995 AACAACCGAT
* *
80493005 AAAATAATAAAAGAAA-AAGT-TCA-AAATA
1 AAAAAAATAAAACAAAGAAGTCTCACAAATA
80493033 AAAAAAATAAAACAAAGAAGTCTCACAAATA
1 AAAAAAATAAAACAAAGAAGTCTCACAAATA
80493064 AAATAAAA
1 AAA-AAAA
80493072 ACAACTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 14 0.42
29 4 0.12
30 3 0.09
31 8 0.24
32 4 0.12
ACGTcount: A:0.72, C:0.07, G:0.06, T:0.15
Consensus pattern (31 bp):
AAAAAAATAAAACAAAGAAGTCTCACAAATA
Found at i:80493976 original size:17 final size:17
Alignment explanation
Indices: 80493954--80493986 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80493944 AATTAAGTTA
*
80493954 TTTTTAAAGTATTTTAT
1 TTTTTAAAATATTTTAT
80493971 TTTTTAAAATATTTTA
1 TTTTTAAAATATTTTA
80493987 AAATATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTAAAATATTTTAT
Found at i:80496964 original size:10 final size:10
Alignment explanation
Indices: 80496949--80496998 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
80496939 TAATTTTCGG
80496949 ATTTAT-TTT
1 ATTTATCTTT
80496958 CATTTATCTTT
1 -ATTTATCTTT
*
80496969 AATTATCTTT
1 ATTTATCTTT
80496979 ATTTAT-TTGT
1 ATTTATCTT-T
80496989 ATTTATCTTT
1 ATTTATCTTT
80496999 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:80500748 original size:21 final size:23
Alignment explanation
Indices: 80500712--80500777 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 23
80500702 GCAACCCAAT
*
80500712 TTTTATTTCTCTTTATTTTTTTA
1 TTTTATTTCTCTTTATTATTTTA
80500735 TTTT-TTTC-CTTTATTATTTTA
1 TTTTATTTCTCTTTATTATTTTA
* *
80500756 TTTTA-AT-TATTTATTATTTTA
1 TTTTATTTCTCTTTATTATTTTA
80500777 T
1 T
80500778 CTTAATGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
21 30 0.79
22 4 0.11
23 4 0.11
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTATTTCTCTTTATTATTTTA
Found at i:80500782 original size:21 final size:21
Alignment explanation
Indices: 80500744--80500792 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
80500734 ATTTTTTTCC
* *
80500744 TTTATTATTTTATTTTAATTA
1 TTTATTATTTTATCTTAATGA
80500765 TTTATTATTTTATCTTAATGA
1 TTTATTATTTTATCTTAATGA
80500786 TTTATTA
1 TTTATTA
80500793 CTTAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATTATTTTATCTTAATGA
Found at i:80502529 original size:10 final size:10
Alignment explanation
Indices: 80502514--80502563 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
80502504 TAATTTTCGG
80502514 ATTTAT-TTT
1 ATTTATCTTT
80502523 CATTTATCTTT
1 -ATTTATCTTT
*
80502534 AATTATCTTT
1 ATTTATCTTT
80502544 ATTTAT-TTGT
1 ATTTATCTT-T
80502554 ATTTATCTTT
1 ATTTATCTTT
80502564 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:80503313 original size:17 final size:18
Alignment explanation
Indices: 80503282--80503315 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80503272 TATTCTCTAT
*
80503282 TTTAATTTTCGCAATTTA
1 TTTAATTTTCACAATTTA
80503300 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
80503316 CAATACGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:80503773 original size:98 final size:98
Alignment explanation
Indices: 80503661--80503858 Score: 353
Period size: 98 Copynumber: 2.0 Consensus size: 98
80503651 ATACCGGCCT
* *
80503661 AAATTAAACCCAAAATCCCAAAAC-CTTCTAGTCCAATTTACAAATGGCTCAAATGAGCCCAACA
1 AAATTAAACCCAAAATCCCAAAACTC-GCTAGTCCAATTTACAAATGGCCCAAATGAGCCCAACA
*
80503725 GTTTGAAAACACCAGAAACCCTAGAGGTTTCTGG
65 GTTTGAAAACACCAAAAACCCTAGAGGTTTCTGG
80503759 AAATTAAACCCAAAATCCCAAAACTCGCTAGTCCAATTTACAAATGGCCCAAATGAGCCCAACAG
1 AAATTAAACCCAAAATCCCAAAACTCGCTAGTCCAATTTACAAATGGCCCAAATGAGCCCAACAG
80503824 TTTGAAAACACCAAAAACCCTAGAGGTTTCTGG
66 TTTGAAAACACCAAAAACCCTAGAGGTTTCTGG
80503857 AA
1 AA
80503859 CATGCTAGCG
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
98 95 0.99
99 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.20
Consensus pattern (98 bp):
AAATTAAACCCAAAATCCCAAAACTCGCTAGTCCAATTTACAAATGGCCCAAATGAGCCCAACAG
TTTGAAAACACCAAAAACCCTAGAGGTTTCTGG
Found at i:80517415 original size:2 final size:2
Alignment explanation
Indices: 80517404--80517438 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
80517394 ATTAAGTTAT
80517404 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80517439 AAGTAAAAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Done.